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[+] Show/hide bicluster #102 rows and columns.
bicluster 102
Methanococcus maripaludis S2
17x41
[+] Show/hide bicluster #102 rows (genes).
bicluster 102 genes
Methanococcus maripaludis S2
17
[+] Show/hide bicluster #102 rows (short gene names).
bicluster 102 short names
Methanococcus maripaludis S2
17
short_name
[+] Show/hide bicluster #102 rows (long gene names).
bicluster 102 long names
Methanococcus maripaludis S2
17
long_name
[+] Show/hide bicluster #102 rows (NCBI RefSeq gene IDs).
bicluster 102 NCBI RefSeq IDs
Methanococcus maripaludis S2
34
[+] Show/hide bicluster #102 gene upstream sequences.
bicluster 102 upstream sequences
Methanococcus maripaludis S2
17
upstream
[+] Show/hide bicluster #102 columns (arrays; conditions).
bicluster 102 arrays
Methanococcus maripaludis S2
41
[+] Show/hide bicluster #102 ratios.
bicluster 102 ratios
Methanococcus maripaludis S2
17x41
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0122 0.141814240184073 -0.189085653578764 -2.2264040131012 -0.699939753632064 -0.690120970538722 -0.83882565266201 -1.30799249247637 -1.94464776433196 5.53697663499004 0.397079872515404 -0.0850885441104438 0.245811349652393 -0.0283628480368146 0.62398265680992 0.472714133946909 0.349808459120713 0.406534155194342 0.595619808773106 0.245811349652393 -0.983245398609572 0.0189085653578763 0.113451392147258 0.0661799787525672 0.056725696073629 -0.0661799787525674 0.699616918241426 0.62398265680992 0.62398265680992 0.954882550572757 0.869794006462313 1.2385110309409 1.17233105218834 -0.368717024478589 -0.378171307157528 -0.444351285910095 -0.699616918241426 -0.274174197689208 -0.179631370899826 -0.226902784294517 -0.302537045726022 -0.330899893762837
MMP0425 -0.501360047694333 -0.37518996946662 -1.10478829536383 -1.27880114422176 -0.776752586410544 -0.828126857530356 -1.32437831860043 -0.904288708075228 4.89930468977157 0.255660421671944 0.0166013260825938 0.235738830372832 -0.0630850391138564 0.136130873877269 0.102928221712082 0.0896471608460065 0.0431634478147439 0.581046412890783 0.53456269985952 -0.142771404310307 0.229098299939794 -0.0166013260825938 0.102928221712082 0.109568752145119 -0.229098299939794 0.707216491118495 1.73649870823931 0.45487633466307 0.58768694332382 0.660732778087233 0.986118769306071 0.806824447614058 -0.0365229173817064 -0.341987317301432 -0.37518996946662 -0.381830499899657 -0.209176708640682 -0.142771404310307 -0.249019891238907 -0.288863073837132 -0.102928221712082
MMP0426 -0.546804483353888 -0.539656712329654 -0.982747567056965 -0.861929979964331 -0.765749280003628 -0.75337704588682 -0.855797657030655 -1.17328003106754 5.18777141098526 0.439587917990381 0.175120390093729 0.0107216565363508 0.0393127406332861 0.0964949088271568 0.132233763948326 0.0107216565363508 -0.0107216565363507 0.346666894675341 0.089347137802923 -0.0536082826817537 0.203711474190664 0.0750515957544553 0.089347137802923 0.153677077021027 -0.0679038247302214 0.675464361790097 0.360962436723809 0.489622315160018 0.668316590765863 0.725498758959734 0.925636347638281 0.789828698177839 -0.039312740633286 -0.210859245214898 -0.28948472648147 -0.275189184433002 -0.0893471378029229 -0.0107216565363507 -0.218007016239132 -0.218007016239132 -0.0464605116575199
MMP0465 -0.714722474203715 -0.677105501877204 -0.849351579320399 -1.01230159257098 -0.628197035444049 -0.87720821125845 -1.40852264419484 -1.36628473527719 4.95739880893397 0.0225701833959068 0.120374311444836 0.225701833959068 0.180561467167254 -0.0150467889306045 0.142944494840743 -0.0827573391183249 0.0978041280489294 0.173038072701952 -0.135421100375441 0.406263301126322 0.39873990666102 0.56425458489767 0.368646328799811 0.391216512195718 -0.0827573391183249 0.647011924015994 0.481497245779345 0.639488529550692 0.56425458489767 0.383693117730415 1.40687476501152 0.857666969044458 -0.127897705910138 -0.376169723265113 -0.278365595216184 -0.225701833959068 -0.413786695591624 -0.39873990666102 -0.458927062383438 -0.669582107411901 -0.142944494840743
MMP0534 0.376017616684612 0.0407729945802591 -1.12473034933215 -0.502443899746761 -0.595861870467199 -1.32288555361841 -1.13482221819135 -1.01590181758015 5.89470985353439 0.856232886185442 0.249168300212695 0.176682976514456 -0.049833660042539 0.303532292986374 0.0407729945802591 -0.0860763218916583 0.240107634750415 0.611594918703887 0.720322904251245 -0.249168300212695 0.095136987353938 0.249168300212695 0.376017616684612 0.285410962061814 -0.0860763218916583 0.47568493676969 0.892475548034561 1.62638945047923 1.36363015207311 1.06462819181788 1.33644815568627 1.12805285005384 -0.176682976514456 -0.294471627524094 -0.303532292986374 -0.394138947609172 -0.258228965674975 -0.131379649203057 -0.412260278533731 -0.584412922317048 -0.285410962061814
MMP0535 0.191672511983097 -0.0396563817896064 -1.20700387676925 -0.720540138516041 -0.523567095058373 -0.933828128083612 -1.44287412685294 -1.67864489890291 5.8330913812343 0.264375878597376 0.0198281908948032 0.112359748403885 -0.204891305912966 0.0132187939298688 -0.125578542333754 -0.178453718053229 -0.0132187939298688 0.49570477237008 0.535361154159686 -0.10575035143895 0.237938290737638 0.244547687702573 0.323860451281785 0.277594672527245 -0.416392008790867 0.389954420931129 0.489095375405145 0.812955826686931 0.429610802720736 0.363516833071392 0.727033666142784 0.654330299528505 -0.224719496807769 -0.264375878597376 -0.138797336263622 -0.310641657351917 -0.482485978440211 -0.376735627001261 -0.482485978440211 -0.555189345054489 -0.310641657351917
MMP0569 -0.356797892304476 0.0926747772219419 -1.66694693592482 -0.855118398947075 -1.1063388820721 -1.37548375140674 -1.52306357991662 -1.6085706025764 5.07150887948391 0.0231686943054854 -0.092674777221942 0.166814598999495 -0.129744688110719 0.0278024331665825 0.106575993805233 0.0463373886109709 -0.199250771027175 0.217785726471563 0.101942254944136 -0.338262936860088 -0.0880410383608449 -0.0602386051942623 0.0139012165832912 0.0046337388610971 0.125110949249622 0.532879969026166 1.05185872146904 1.40402287491242 1.17696967071866 1.14453349869098 0.889677861330642 0.847974211580768 0.0926747772219419 -0.0602386051942623 -0.0834072994997478 -0.129744688110719 -0.17608207672169 -0.125110949249622 -0.217785726471564 -0.324361720276797 0.106575993805233
MMP0958 -0.303590166734778 -0.458758474176998 -1.32665318475196 -0.587005498557779 -0.813245896673062 -0.693119153650245 -0.992674431661466 -1.36970791042561 5.27270196025571 0.134928962993235 -0.236125685238161 -0.0472251370476322 -0.00674644814966175 0.290097270435455 0.330575959333425 0.209139892639514 0.0472251370476322 0.303590166734778 0.276604374136131 -0.0742109296462792 -0.148421859292558 0.0607180333469556 0.256365029687146 0.256365029687146 -0.202393444489852 0.00674644814966172 0.168661203741544 0.755602192762115 0.721869952013806 0.485744266775645 0.701630607564821 0.701630607564821 -0.229379237088499 -0.391293992680381 -0.478997818625984 -0.458758474176998 -0.364308200081734 -0.303590166734778 -0.364308200081734 -0.42502623342869 -0.215886340789176
MMP0959 -0.523973993252788 -0.483668301464113 -1.38453960946206 -0.641033082654232 -0.915590566614075 -1.02244959247981 -1.29570708544648 -1.68189021547846 4.76769738752943 -0.259108018641489 -0.103643207456595 0.086369339547163 -0.0633375156679194 0.362751226098084 0.403056917886761 0.408814873856571 -0.207286414913191 0.564279685041465 0.380025094007517 -0.149706855215082 -0.0230318238792435 0.0633375156679196 0.149706855215082 0.230318238792435 -0.276381886550921 0.339719402218841 0.59882742086033 0.990368426807469 0.806113835773521 0.552763773101843 0.950062735018793 1.1112855021735 -0.385783049977328 -0.564279685041465 -0.518216037282978 -0.53548990519241 -0.39729896191695 -0.391541005947139 -0.33396144624903 -0.391541005947139 -0.299413710430165
MMP1001 -0.0104359923612054 -0.142625228936474 -1.43700525064326 -0.78848528040202 -0.700940850409592 -0.972998794643014 -0.997712295982898 -1.3116575306229 5.32224199011694 0.400046373846206 0.149582557177277 -0.0382653053244197 -0.240027824307724 0.0591372900468305 -0.0382653053244197 -0.13566790069567 0.121753244214063 0.358302404401385 0.372217060882992 -0.128710572454866 0.288729121993349 0.0939239312508484 0.191326526622099 0.128710572454866 -0.121753244214063 0.650510190515135 0.13566790069567 0.156539885418081 0.476576984495046 0.476576984495046 0.977504617832904 0.880102022461653 -0.0382653053244197 -0.128710572454866 -0.121753244214063 -0.281771793752545 -0.0730519465284376 0.0452226335652233 -0.246985152548527 -0.177411870140491 -0.0939239312508484
MMP1052 0.114601127260146 0.132937307621769 -0.49119795165732 -1.08912381394684 -0.760009298715666 -0.648924528267739 -0.948922408440651 -1.38070409463305 5.21262568157089 0.371307652322872 0.0137521352712175 -0.0595925861752758 -0.371307652322872 0.41714810322693 0.41714810322693 0.343803381780437 0.215450119249074 0.0229202254520292 -0.63718226756641 -1.0222420551605 -0.0687606763560873 -0.169609668345016 0.00458404509040583 -0.00458404509040583 -0.41714810322693 0.462988554130989 0.52716518539667 0.69219080865128 0.866384522086701 0.848048341725078 1.28811667040404 1.18726767841511 -0.0595925861752758 -0.187945848706639 -0.187945848706639 -0.30713102105719 0.142105397802581 0.187945848706639 -0.077928766536899 -0.30713102105719 0.0137521352712175
MMP1060 -1.14628569562345 -0.596068561724193 -1.67682058011253 -0.831703726162187 -0.250217582238134 -1.11130608674967 -1.52025904574717 -1.24992417575166 4.72071006159279 -0.0720522437249024 0.0327510198749557 -0.203056323224725 -0.0327510198749556 0.582968153774211 0.451964074274388 0.34716081067453 0.543666929924264 0.294759178874601 0.858076720723838 -0.22925713912469 0.478164890174352 0.399562442474459 0.700871825324051 0.674671009424086 -0.412662850424441 0.386462034524477 0.661570601474104 1.06768324792355 1.12008487972348 0.740173049173998 1.23798855127332 1.64410119772277 -0.189955915274743 -0.22925713912469 -0.46506448222437 -0.661570601474104 -0.137554283474814 -0.203056323224725 -0.674671009424086 -0.517466114024299 -0.0720522437249024
MMP1124 0.284667824162999 -0.0613989424665292 -0.196283320858565 -0.747242466646324 -0.447819103504996 -0.980631378799342 -1.22712636408649 -1.28139895456981 5.7234609875773 0.563753926283587 0.240014047823705 0.195360271484411 -0.106052718805823 0.0502354983817058 0.0279086102120588 -0.0725623865513527 0.507936705859469 -0.240014047823705 1.44566600898464 -0.12837960697547 0.0948892747209997 -0.262340935993352 0.0948892747209997 0.195360271484411 0.251177491908529 0.976801357422056 0.664224923046998 0.463282929520175 0.608407702622881 0.753532475725586 1.1889067950337 1.60195422617217 -0.0502354983817057 -0.284667824162999 -0.385138820926411 -0.31815815641747 -0.251177491908529 -0.161869939229941 -0.396302265011234 -0.463282929520175 -0.0837258306361762
MMP1282 -0.097472746071 -0.292418238213 -0.916294511891724 -0.61876439998741 -1.02085062191425 -0.869933803107114 -1.08178463692033 -1.55438999929817 4.52023207064434 -0.3314073366414 0.2079418582848 0.2209382244276 -0.0194945492142 0.00649818307140001 0.0454872814998001 0.0324909153570001 -0.2014436752134 -0.1104691122138 0.779781968568001 0.2209382244276 0.2859200551416 0.0714800137854001 0.1039709291424 0.0909745629996002 -0.4743673642122 0.1884473090706 1.0332111083526 1.1501784036378 0.519854645712001 0.4483746319266 0.565341927211801 0.656316490211401 -0.3379055197128 -0.643320124068601 -0.5393491949262 -0.610829208711601 -0.727796503996801 -0.701803771711201 -0.597832842568801 -0.773283785496601 -0.2469309567132
MMP1283 -0.127041107767225 -0.205685603051698 -1.3058963027366 -1.23378058912054 -0.954696399247403 -1.0561318938276 -1.29242013894967 -2.03452001987437 4.25548216359631 -0.393222476422364 0.139140260887913 0.127041107767225 -0.108892378086193 0.0483966124827525 0.139140260887913 0.217784756172386 -0.0362974593620644 0.22383433273273 1.08287420430159 0 -0.0120991531206881 0.0302478828017203 0.0544461890430966 -0.19358644993101 -0.435569512344773 0.41742078266374 0.659403845077503 0.477916548267181 0.393222476422364 0.471866971706837 0.568660196672342 1.04657674493952 -0.471866971706837 -0.756197070043008 -0.653354268517159 -0.77434579972404 -1.02237843869815 -0.992130555896427 -0.738048340361976 -0.816692835646449 -0.314577981137891
MMP1514 -0.495458401696708 -0.412882001413924 -1.30461701002203 -0.410440193664304 -0.367116296509884 -1.00170484385219 -0.8147373755554 -2.53650714404095 5.07553698531392 0.0235932572236528 0.283119086683833 0.0235932572236528 -0.141559543341917 -0.0707797716709583 0.0825764002827847 0.0353898858354792 -0.106169657506437 0.377492115578444 0.672407830874104 0.0589831430591319 0.176949429177396 -0.0235932572236528 0.106169657506437 0.271322458072007 -0.141559543341917 1.19145948979447 0.483661773084882 0.283119086683833 0.71959434532141 0.790374116992368 1.40379880480734 1.36840891897186 -0.0353898858354791 -0.389288744190271 -0.589831430591319 -0.825764002827847 -0.589831430591319 -0.353898858354792 -0.235932572236528 -0.389288744190271 0.0471865144473056
MMP1598 0.396836210824193 0.0353616425486905 -1.05026879797515 -0.48786245371419 -0.465271581932388 -0.700642478077582 -0.654987619311106 -1.58405215573807 5.70877918035877 0.381119925246997 -0.200382641109246 -0.247531497840833 -0.00392907139429895 0.145375641589061 0.00392907139429895 0.18466635553205 0.263247783418029 -0.0510779281258863 0.318254782938214 -0.0196453569714947 0.263247783418029 0.0825104992802776 0.168950069954854 0.145375641589061 -0.341829211304008 0.703303779579511 0.546140923807553 0.970480634391839 1.15907606131819 0.884041063717262 1.00191320554623 1.15907606131819 -0.145375641589061 -0.475417638710172 -0.302538497361019 -0.475417638710172 -0.711161922368108 -0.538282781018955 -0.428268781978585 -0.365403639669802 -0.161091927166257
[+] Show/hide bicluster #102 motif PSSM #1. bicluster 102 motif PSSM #1 Methanococcus maripaludis S2 14x4
POSITION A C G T
1 0.2 0 0 0.8
2 1 0 0 0
3 0.8 0 0 0.2
4 1 0 0 0
5 0.2 0.2 0 0.6
6 0 0.8 0 0.2
7 0.1 0 0 0.9
8 0.5 0 0 0.5
9 0 0 0.1 0.9
10 0.1 0.6 0.3 0
11 1 0 0 0
12 1 0 0 0
13 0.9 0 0 0.1
14 0.2 0.5 0 0.3 [+] Show/hide bicluster #102 motif PSSM #2. bicluster 102 motif PSSM #2 Methanococcus maripaludis S2 12x4
POSITION A C G T
1 0 0 0 1
2 0 1 0 0
3 0.666667 0 0 0.333333
4 0 0.666667 0 0.333333
5 0 0.333333 0.666667 0
6 0 0.333333 0.666667 0
7 1 0 0 0
8 0 0 0 1
9 0 0 0 1
10 0 1 0 0
11 0.666667 0 0.333333 0
12 0 1 0 0 |