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bicluster 99
Methanococcus maripaludis S2
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bicluster 99 genes
Methanococcus maripaludis S2
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bicluster 99 short names
Methanococcus maripaludis S2
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bicluster 99 long names
Methanococcus maripaludis S2
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[+] Show/hide bicluster #99 rows (NCBI RefSeq gene IDs).
bicluster 99 NCBI RefSeq IDs
Methanococcus maripaludis S2
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bicluster 99 upstream sequences
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upstream
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bicluster 99 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_HighH2 ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0064 2.69261666156278 -0.0136987731127763 -0.0410887771329723 -0.222760318290088 -0.308798971756758 4.08010076803457 3.47355921847534 2.26492344613318 1.57814684058758 0.338247759318119 0.0215902825096672 0.0133654129821749 0.0832768039658592 -0.015421630364048 2.4088586628643 -0.0133654129821749 -0.270392585716308 -0.126457368985194 -0.169637934004528 -0.105895195166463 2.16622501180328 1.87012970881355 1.00857462580874 0.377315889573708 0.408159150301804 0.434889976266153 0.441058628411773 2.1415504032208 0.0174778477459211 -0.241605542370085 -0.206649846878243 -0.290954759535039 -0.260111498806943 -0.171694151386401 0.0524335432377632
MMP0065 2.31925984252183 -0.203493092372419 -0.406629765048957 -0.510970862025098 -0.542679861947587 3.5262531970382 2.95139603551109 2.17755353849809 1.60317065285521 0.77749525474357 0.0746319867858348 0.0330648042722053 0.150208682265161 0.0614060650769527 2.40239420754909 -0.133203925782313 -0.390164690412022 -0.30514090799778 -0.314587994932696 -0.227674795131471 2.39294712061417 2.2096736340768 1.7165356960742 0.244679551614319 0.276799647193033 0.348597507898393 0.41283769905582 2.39672595538814 -0.0122812130153905 -0.242790134227336 -0.297583238449847 -0.350486925285376 -0.320256247093645 -0.31080916015873 0.0122812130153905
MMP0066 1.61466548511129 0.775343455266073 0.601824279646317 0.107294639547208 0.0389322655379784 -2.56552780801625 0.0311970733717965 2.07996693673476 0.836848133143702 -0.18403714131376 -0.0937547701032364 -0.371546681520233 0.0868099723178113 -0.434049861589057 2.20497329687241 0.302098703665984 0.329877894807683 -0.406270670447357 -0.697952177435204 0.267374714738859 2.17024930794529 1.63549987846757 -0.19792673688461 -0.128478759030361 -0.0104171966781374 0.218761130240885 0.22570592802631 2.57999237728536 -0.253485119168009 -1.01741287556475 -1.18408802241495 -1.46187993383194 -1.2813151914109 -0.0868099723178115 -0.267374714738859
MMP0067 1.79650807897602 -0.474154583522132 -0.261628560274466 0.656568508124944 0.159117491525984 4.96029339626803 3.12032310284862 1.84014795133981 0.661871397517481 0.191530550929967 0.0800064326669482 -0.11879743032365 0.138192929152001 -0.220623799172494 1.87893894899651 0.463067534526882 -0.11879743032365 -0.191530550929967 -0.109099680909475 0.298205794485898 2.12623155905799 1.67043733659174 0.29335691977881 0.458218659819794 0.472765283941058 0.42427653687018 0.448520910405619 2.17472030612887 -0.526102905719023 -0.341845666849688 -0.113948555616563 -0.128495179737826 0.113948555616563 -0.0266688108889828 -0.409729912748917
MMP0068 2.5001373798489 -0.465549574467266 -0.673926004586878 0.116358671948861 0.629983684719711 1.76363550408359 1.9957985104423 3.11333159265332 1.53797085081433 0.3514649756318 -0.461141989304135 -0.451171351697559 -0.221846686746313 -0.361435613238376 2.0464733687497 0.371406250844952 -0.530936452550166 -0.32653838161536 -0.316567744008784 0.102199035467403 2.41538696019301 2.16612102002861 1.04940960809211 0.780202392714563 0.810114305534291 0.700437291861956 0.565833684173182 2.51509333625877 -0.306597106402208 0.171993498713434 0.52096581494359 0.849996855960594 1.28870491064993 -0.0174486158115078 -0.266714555975905
MMP0204 1.53138927156619 2.98328043790851 1.26352043285308 0.1658801252887 -0.380197778095837 -0.027263062225386 2.53495996522615 2.6639279611489 2.2010643227977 1.57078192163863 0.610586076122853 0.137874275253548 -0.211735494139376 -0.472711800869305 3.00861364928277 0.571193426050411 0.221583656657487 0.408698744501587 -0.369306094429145 0.241279981693708 1.6840357905969 1.65449130304257 0.595813832345687 -0.329913444356703 -0.438243232055918 -0.0344685688133867 0.00984816251811054 1.69880803437407 -0.393926500724421 -0.172342844066934 -0.256052225470874 -0.310217119320482 -0.305293038061426 0.216659575398432 -0.482559963387416
MMP0205 1.89109834202097 -0.184779261523567 -0.191029263998909 -0.0293575132210997 0.130845859728998 5.27855113796091 3.35836968208885 2.57649641836191 1.57841673785084 0.762943114175127 0.200116226668886 0.0275159811669718 0.0125072641668054 -0.0850493963342765 2.49895138052771 -0.0100058113334443 -0.250145283336107 -0.0950552076677208 0.0575334151673047 -0.0475276038338604 1.21570607701348 1.10063924667887 0.470273132671882 0.327690321170301 0.317684509836856 0.237638019169302 0.28016271733644 1.2082017185134 -0.0900523020009986 -0.252646736169468 -0.225130755002497 -0.172600245501914 -0.100058113334443 -0.267655453169635 -0.0875508491676376
MMP0456 0.775537832218808 1.02777428290545 -0.780976231479084 -1.31906588271089 -1.58852208844096 1.22431276124772 4.30063876230526 1.97813394209114 1.00102460281987 0.351896020786508 -0.119576317742988 0.249402034149661 0.249402034149661 -0.283566696361943 2.06012913140062 -0.030748195991054 -0.857533021528285 -0.515886399405463 -0.433891210095985 -0.263067899034574 0.94636114328022 1.01469046770478 0.38606068299879 1.27434190051813 1.37000295471252 1.56815799554376 1.47249694134937 0.932695278395307 -0.290399628804399 -0.748206102448982 -0.727707305121613 -0.50222053452055 -0.304065493689312 -0.379227750556333 -0.290399628804399
MMP0480 0.941496209283045 1.11910550127351 1.08455353847292 0.740817644166357 0.61681374904545 2.03813490282981 4.14791881717211 0.629858769380499 0.770315080322491 0.910771391264484 1.1126773382436 1.28824772692109 0.959053248150794 0.726422483153119 0.700086924851495 -0.748368781737805 -0.8537110149443 -0.985388806452418 -1.27069068805334 -1.23118735060091 -0.331389108628764 0.366503186364262 -0.164597239385148 0.669362106832934 0.726422483153119 0.844932495510425 0.568409133343377 -0.309442810044078 -0.414785043250572 -0.520127276457067 -0.651805067965185 -0.485013198721569 -0.66058358739906 -0.44989912098607 -0.392838744665886
MMP0514 0.962546271186961 -1.35901876936327 -1.04337468191381 -0.204976180003559 -0.135474742563067 0.443737145351772 0.512043722174649 2.52378970761392 0.830237505388066 0.0496157871745857 -0.611928041819889 -0.711159616169061 -0.393618578251713 0.565619973790276 1.63732097676133 -0.539158220630497 -0.387003139961768 -0.823622067098121 1.59762834702166 0.559004535500331 2.21286410798652 2.19301779311668 0.962546271186961 0.281156127322652 0.413464893121547 -0.0430003488846409 1.03531609237635 2.17317147824685 0.605312603529945 -0.301002442192486 -0.466388399441105 -0.578850850370166 -0.426695769701436 -1.06177784553613 0.631774356689724
MMP0853 2.39483176959927 -0.118372329313367 -0.33281402351424 -0.355873307350874 -0.219312174338087 3.23093562768995 3.18830972087396 2.10381099245846 1.85253314083027 1.74484263298962 1.43715546773061 0.889728719540627 0.32819964294294 0.0128202985524586 2.32432012756074 -0.00512811942098344 -0.130767045235078 -0.138459224366553 -0.0923061495777019 0.00512811942098344 2.3538068142314 2.19355308232567 2.07688836549829 0.361532419179333 0.25384191133868 0.156407642339995 0.229483344089009 2.30893576929779 -0.137177194511307 -0.146151403498028 -0.156407642339995 -0.115382686972127 -0.0884600600119644 -0.17948417973442 -0.138459224366553
MMP0854 2.5538742464394 -0.0515376492937253 -0.270099043403839 -0.265610608571745 -0.28214159969275 3.01514768035955 2.97061901543322 2.51898986589759 2.1521412189096 1.70877199524927 1.3227932040932 0.754515392041249 0.286389511222219 -0.0208180980652694 2.5538742464394 0.000562651299061335 -0.000562651299061335 -0.127721844886923 -0.0602036889995628 0.0624542941958081 2.38732946191724 2.28492692548808 2.0328591435086 0.325775102156513 0.214370144942368 0.113092911111328 0.13897487086815 2.37270052814165 -0.118719424101942 -0.111967608513206 -0.129972450083168 -0.0849603461582615 -0.0703314123826668 -0.152478502045622 -0.132223055279414
MMP0855 1.93209692102343 -0.573977236313651 -0.601674165062861 -0.638543347155806 -0.660278311231589 2.22916161941097 2.18379172449535 1.87877518115852 1.58604971128789 1.16056399114136 0.75357765013164 0.261711804847161 -0.175744101799653 -0.409706837941606 1.96256648666052 1.46634784628503 1.4717888401488 1.54034536283225 1.51858138737719 1.42826088923867 1.84286462165766 1.76995530388319 1.53599256774124 -0.0821590073428719 -0.17792049934516 -0.256270810983395 -0.202949071118485 1.83198263393013 -0.466293174124776 -0.474998764306802 -0.491321745898101 -0.458675782715503 -0.432559012169425 -0.509821125034907 -0.469557770443036
MMP0856 2.61223863531262 -0.116883884943376 -0.240438756583009 -0.231123565499884 -0.121951044445296 3.11845931189369 3.19783846030035 2.48187982744576 2.16420933448865 1.68707078530607 1.20360413865422 1.30991617613787 0.163264914707039 -0.0442966822848555 2.57680128948473 0.00379685848155904 -0.094921462038976 -0.094921462038976 -0.0721403111496218 -0.0417654432971494 2.30089623982478 2.19331858284727 1.95538211800291 0.239202084338219 0.229077128387395 0.199967880028776 0.187311685090246 2.27684946944157 -0.0708746916557687 -0.0506247797541205 -0.0480935407664145 -0.0202499119016482 0.00126561949385301 -0.0784684086188868 -0.0721403111496218
MMP0857 2.4843300657174 -0.168656865834465 -0.268652909350843 -0.220525317803404 -0.242610773965606 2.95503248257839 3.04833814324718 2.44609355745619 2.1915817993425 1.72079479137632 1.24403332899433 0.665706141543499 0.172216206797231 -0.0416692612889245 2.4843300657174 -0.0297203524572957 -0.0655670789521821 -0.10619336897972 -0.113362714278697 0.0276344099345224 2.34572272327051 2.31226577854195 2.14020149136649 0.227181187422723 0.15548773443295 0.0969380811579694 0.0969380811579694 2.34572272327051 -0.0691517516016707 -0.0428641521720874 -0.0440590430552503 -0.0106020983266897 0.0144906102197307 -0.0775159877838109 -0.0822955513164624
MMP0858 2.59999604019082 -0.146767892919185 -0.277074024271683 -0.247022763573602 -0.196685326419729 3.3049900813721 3.44613230698049 2.33350865426302 1.92749907674999 1.86610931245249 1.03595227252035 0.595062147111019 0.240675780484527 -0.0118593862847448 2.54837282930428 0.0118593862847448 -0.145800690206568 -0.0830157039932136 -0.101153588899294 -0.0286020492749728 2.08794959707301 2.03214072043892 1.83820487413544 0.39833585697584 0.385778859733169 0.313227320108848 0.289508547539358 2.04888338342915 -0.0565064875920194 -0.0690634848346903 -0.0174402739481541 -0.0383686026859391 -0.0146498301164495 -0.0565064875920194 -0.0481351560969054
MMP0859 2.39497790670714 -0.311599793561271 -0.298964835711006 -0.274545551377925 -0.385563047846107 2.93743063795847 3.01382129711707 2.32467927462538 2.18959562866434 1.88358981842608 1.31982235722135 0.751919682364746 0.214341907621848 -0.0379061251421275 2.39773471580839 -0.0765014525595663 -0.119231993628874 -0.0847718798633032 -0.166097748350049 -0.0544469797496013 2.28746235175856 2.25300223799299 2.18408201046185 0.232261166779945 0.144043275540084 0.0379061251421274 0.0365277205915046 2.28194873355607 -0.0765014525595663 -0.0268788887371449 0.0103380341296711 0.033770911490259 0.0475549569964872 -0.0434197433446187 -0.0985559253695314
MMP0860 2.39488235765191 -0.206056203860851 -0.218296842998787 -0.325296911302382 -0.425796778132728 2.9337521083517 2.99430106228293 2.3892737338635 2.20559130479301 1.91674717968979 1.28157053565214 0.68845857002757 0.165454401758153 -0.0112172475768239 2.47340309068968 -0.128998347133475 -0.185084585017595 -0.110770319821136 -0.19209536475311 -0.00841293568261793 2.246253827259 2.23643873562927 2.13548350743786 0.224344951536479 0.117781099556651 0.0729121092493557 0.100955228191416 2.22241717615824 -0.0168258713652359 -0.0168258713652359 0 0.011217247576824 0.0308474308362659 -0.0743142651964586 -0.0448689903072958
MMP1033 -0.284444095076816 0.34192256232521 0.0515838666251725 -0.0983278600837939 -0.334260986231245 2.50958286824465 4.27348268437234 -0.0831451970224539 -0.345708977093361 -0.170666457046089 -0.415725985112269 -0.170666457046089 0.0831451970224539 -0.0306324410082725 -0.249435591067362 -0.144410079038999 0.118153701031908 -0.739554647199721 -0.83582803322572 -0.503247245135905 0.109401575029545 -0.240683465064998 1.64102362544317 0.0568888190153632 -0.179418583048453 0.19692283505318 0.144410079038999 0.0918973230248175 -0.153162205041362 -0.0568888190153632 0.0568888190153632 0.188170709050817 0.258187717069725 -0.0831451970224539 -0.179418583048453
MMP1049 -0.253862654434248 -0.795125176189258 -0.396615926789695 -0.888627630140923 -1.79353357580735 3.2268288770858 4.94808315578175 -0.104531681237631 1.04531681237632 0.80638725526173 0 -0.238929557114586 -0.119464778557293 0.149330973196617 0.866119644540376 0.552524600827481 0.701855574024098 0.44799291958985 -0.910918936499361 -0.671989379384775 0.642123184745451 1.2842463694909 1.0901161043353 -0.851186547220715 -0.477859114229173 0.62719008742579 1.11998229897462 0.746654865983083 -0.0597323892786465 -0.164264070516278 -0.313595043712895 -0.507725308868496 -0.866119644540376 -0.0149330973196617 0.194130265155602
MMP1091 -0.150412581175063 -0.245790429546561 -0.668734636729491 -1.13057735602914 -1.42468308244494 3.23861125369281 3.65188227736779 -0.697367421811654 0.0136738710159148 0.218781936254637 0.123064839143233 0.109390968127318 -0.0957170971114035 -0.136738710159148 0.0410216130477444 -0.0683693550795739 0.123064839143233 -0.642671937747995 -1.87332032918033 -0.888801616034461 0.779410647907143 -0.218781936254637 1.54514742479837 -0.0273477420318296 -0.328172904381955 0.0136738710159148 -0.0410216130477444 0.929823229082206 0 0.615324195716165 0.464911614541103 0 -0.382868388445614 0.601650324700251 0.150412581175063
MMP1206 2.51524650949831 0.528351723596068 0.614390916816286 0.794816387525412 0.899080873191153 2.55817530292017 1.49518133741849 2.29538804095768 0.720282594696514 -0.113210703950022 -0.339632111850065 -0.395417096405148 -0.19196597626308 -0.0705515981137815 2.43649123718525 0.979518699393665 -0.214936264021055 -0.162432749145683 -0.323224763451511 0.78919345797044 2.81386025035198 0.700593776618249 -0.359320929928329 -0.900763427080606 -0.972955760034243 -0.792474927650151 -0.78591198829073 2.83683053810996 0.00492220451956616 0.569334989429819 0.631682913344323 0.739971412774779 0.87451166964292 0.986081638753086 -0.00820367419927693
MMP1388 1.54067669057377 2.1928657630934 -0.351296951677386 -1.3284000756973 -1.33842266066302 2.91350879833091 1.31579189577366 1.9976570648965 1.31871479447416 0.796451509533899 0.195848731852598 -0.117509239111559 0.274188224593637 -0.731168598916366 1.8018083330439 0.927017330768964 0.809508091657405 -0.770338345286886 -1.31871479447416 1.86709124366144 1.2012055553626 1.64512934756182 0.0783394927410393 1.33177137659767 1.82792149729092 1.33177137659767 1.41011086933871 1.22731871960961 -0.391697463705196 -0.731168598916366 -1.01841340563351 -0.835621255904418 -0.404754045828703 -0.143622403358572 -0.470036956446235
MMP1390 1.93036927574725 2.55939573570269 0.798970334505012 -0.639171014765517 -0.823063116353122 2.58923879789332 3.73031558441189 1.81168472714796 0.973911442917691 -0.0104721660528784 -0.366525811850744 -0.26180415132196 -0.26180415132196 -0.485210360450033 2.62153223523723 0.562006244837808 0.841264006247898 0.0104721660528784 -0.205952599039942 0.394451587991753 2.10490537662856 1.21826198415152 0.191989710969437 0.883152670459412 0.904097002565169 0.925041334670926 0.911078446600421 2.12584970873432 -0.35256292378024 -0.387470143956501 -0.506154692555789 -0.464266028344276 -0.366525811850744 -0.185008266934185 -0.275767039392465
MMP1442 1.75830346613615 0.608570590079187 0.285355503896438 -0.285191803764276 -0.878135332001897 0.583531332093911 3.37401748597476 1.24536868363651 1.08363249095644 1.02355904796099 0.566076674380231 0.154804641565206 -0.492140129155058 -0.769402173749457 1.80451380690188 -0.0485208578040198 -0.00693155111485998 0.806370446362043 -0.094731198569753 -0.390477379470445 2.03094447665397 2.14184929449173 1.56884106899664 -1.31468419478511 -1.06514835465015 -0.344267038704712 0.0346577555742999 2.04942861296027 -0.709328730754004 0.612287015145964 0.399719447623592 0.00693155111485998 -0.510624265461351 -0.469034958772192 -0.672360458141417
MMP1576 1.27072470300007 -0.630826791162874 -0.69764830446879 -0.763542252832384 -0.870285999648268 4.24985199754404 4.52415040515056 1.28304986985749 0.00123251668574207 0.0677884177158138 -0.0899737180591711 -0.25020088720564 -0.205830286518926 -0.0209527836576151 1.15240310116884 1.78838171101174 0.5361447582978 0.0505331841154249 -0.119554118516981 1.87958794575666 0.868924263448159 -0.0677884177158138 -0.255130953948608 -0.0505331841154248 -0.00123251668574207 -0.00123251668574207 -0.0406730506294883 0.876319363562612 -0.0209527836576151 0.871389296819643 0.440008456809919 0.363592422293911 0.205830286518926 0.191040086290021 0.0308129171435518
Unanno_47 -0.689661086696203 0.0486514730296213 -0.184052168481706 -0.236917467196087 -0.81463676206812 1.64932505051671 2.39703732113898 0.383935037954587 1.0949258489816 1.16957988413944 1.07715107870593 0.899403375949172 0.927843008390252 0.359050359568642 0.757205213743769 0.0142198162205403 -0.0142198162205403 -1.74192748701618 -1.21579428685619 -0.29506118657621 0.472808889332964 0.750095305633499 0.373270175789182 1.68149326807889 1.67082840591348 1.83435629244969 1.72059776268537 0.53324310827026 -0.163527886536213 -0.263066600079995 -0.451479165002153 -0.515468337994585 -0.543907970435665 -0.54035301638053 -0.0639891729924312
Unanno_6 2.45315737886443 0.130814086432181 -0.263758441673159 -0.368595544368938 -0.159870606488763 3.20659266196734 3.06365196199533 2.2563853205636 1.82121634547522 1.51975146128357 1.33307027776739 0.945832957906144 0.238210363632003 -0.044334130338421 2.33206688144853 -0.0140615059844471 -0.109924816438698 -0.170470065146646 -0.0228910214210228 0.0225179151099381 2.50991854952813 2.37747581797949 2.09493132400907 0.320198721257349 0.244517160372414 0.199108223841453 0.23694900428392 2.50991854952813 -0.0973112229578754 -0.152811034273494 -0.157856471665823 -0.0985725823059577 -0.0506409270788323 -0.191913174064044 -0.123799769267603
[+] Show/hide bicluster #99 motif PSSM #1. bicluster 99 motif PSSM #1 Methanococcus maripaludis S2 21x4
POSITION A C G T
1 0 1 0 0
2 0 0 1 0
3 0 0.5 0 0.5
4 0.5 0 0 0.5
5 0 0 1 0
6 0 0 0.5 0.5
7 0 0 0 1
8 0 0 0 1
9 0 0.5 0.5 0
10 0 1 0 0
11 0 0.5 0.5 0
12 0 1 0 0
13 0 0 0 1
14 1 0 0 0
15 0 1 0 0
16 0 0.5 0.5 0
17 0 0 1 0
18 0.5 0.5 0 0
19 0 0 0 1
20 1 0 0 0
21 0 1 0 0 [+] Show/hide bicluster #99 motif PSSM #2. bicluster 99 motif PSSM #2 Methanococcus maripaludis S2 22x4
POSITION A C G T
1 0.333333 0.666667 0 0
2 0 0.333333 0.666667 0
3 0 0 0 1
4 0 0 0 1
5 0.666667 0 0.333333 0
6 0 0 0.333333 0.666667
7 0 0.666667 0 0.333333
8 0 0.333333 0 0.666667
9 0 0 0 1
10 0 0 0 1
11 0 0 0.333333 0.666667
12 0 0 0.333333 0.666667
13 0 0 1 0
14 0.666667 0.333333 0 0
15 0 0 0 1
16 1 0 0 0
17 0 0 0.666667 0.333333
18 0 0 1 0
19 0 0 1 0
20 0 0 0.666667 0.333333
21 0 1 0 0
22 0 0.333333 0.666667 0 |