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bicluster 98
Methanococcus maripaludis S2
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bicluster 98 genes
Methanococcus maripaludis S2
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bicluster 98 short names
Methanococcus maripaludis S2
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bicluster 98 long names
Methanococcus maripaludis S2
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[+] Show/hide bicluster #98 rows (NCBI RefSeq gene IDs).
bicluster 98 NCBI RefSeq IDs
Methanococcus maripaludis S2
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bicluster 98 upstream sequences
Methanococcus maripaludis S2
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bicluster 98 arrays
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bicluster 98 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0300m
MMP0050 0.760879842462674 -0.182294128923349 0.337114622492511 0.859868177918342 0.672335415057133 0.721008042589647 0.760017718046173 0.779582205583752 -0.881609780460158 -1.06998727846313 -0.372514089539017 -0.554808218462366 -0.65784403046252 -0.737102347385715 -0.443846574769893 -0.427994911385254 -0.015851663384639 0.293255772615822 0.245700782461905 -0.261552445846544 -0.396291584615976 -0.863915654462827 -0.768805674154993 -1.36324305107896 -1.29191056584808 -0.681621525539478 -1.14924559538633 -1.03828395169386 -1.68027631877174 -1.04620978338618 0.729176515693395 0.887693149539786 0.110961643692473 0.689547357231798 2.13204872523395 0.792583169231952 0.269478277538863 0.015851663384639 -0.0554808218462367 1.2998363975404
MMP0051 -0.218750332000813 -0.501302844168531 0.693997249905106 0.816506459276756 0.733370313568473 0.727059649042762 0.939564412970828 0.939701596772784 -3.69067983187148 0 0.200521137667412 -0.273437915001017 -0.355469289501322 -0.391927678168124 -0.218750332000813 -0.337240095167921 -0.136718957500508 -0.0455729858335028 0.309896303667819 0 -0.519532038501932 -1.17578303450437 -0.692709384669243 -1.03906407700386 -0.993491091170361 -0.765626162002847 -0.756511564836147 -0.64713639883574 -1.6223982956727 -1.01172028550376 0.665365593169141 0.729167773336045 0.209635734834113 0.382813081001424 1.6223982956727 0.820313745003051 0.519532038501932 0.373698483834723 -0.173177346167311 1.46745014383879
MMP0342 -0.580222915713157 -0.154726110856842 -0.60617059087805 -0.0722794226820181 -0.074899390246775 0.132514703794628 0.077932041360333 0.0774953849347313 -3.45494860793856 -1.25714965071184 0.125714965071184 -0.425496804856315 -1.3055015603546 -0.66725635307013 -0.464178332570525 -0.183737256642499 -0.203078020499605 0.0870334373569736 0.135385346999737 -0.309452221713684 0.232089166285263 -0.193407638571052 -0.744619408498551 -1.43121652542579 -1.19912735914052 -0.918686283212498 -0.763960172355656 -0.812312081998419 -1.3055015603546 -0.0290111457856577 1.31517194228315 0.705937880784341 0.647915589213025 0.676926734998683 0.792971318141314 1.32484232421171 0.763960172355656 0.551211769927499 -0.0870334373569734 0.0290111457856579
MMP0413 -0.84687201052926 1.13251530149162 0.526364406994137 0.863167787283431 0.626279107055049 0.979613831304368 0.974406155818775 0.895988249692745 -2.71159861346804 -1.14860788126415 -0.971589503766348 -0.645714763372666 -0.420418646557281 -0.271562283661402 0.0100578623578297 0.545136139794369 0.770432256609755 0.959520068936953 0.814686850984205 -1.08021441723091 -1.67966301375756 -1.94519058000426 -1.63138527443998 -1.73196389801827 -1.59920011489492 -1.30953367898943 -1.12044586666223 -0.416395501614149 -0.428464936443545 -1.90495913057294 1.0922838520603 0.629622183600139 0.440534371272941 0.436511226329809 0.484788965647391 1.12044586666223 1.2813716643875 0.858941445358656 -0.348002037580907 0.158914225253709
MMP0487 -1.02073956576469 0.617875612979513 -0.624555219533845 -0.688121945737889 -0.272519575089044 0.11140162863151 0.198337469733775 0.167950804270131 -2.23286825729295 -0.898522411548962 -0.916628656617958 -0.264803834134077 -0.174272608789093 -0.0248960869698705 0.174272608789093 0.617875612979513 0.821570870005726 0.980000514359447 0.998106759428444 -1.03431924956644 -1.37833790587737 -1.55940035656734 -1.47339569248961 -1.7857284199298 -1.69067063331757 -1.64087845937783 -1.55034723403284 -1.03884581083369 -0.957367708023201 -1.39191758967912 1.43265664108436 0.916628656617959 0.921155217885208 0.776305257333234 0.672194348186503 1.39191758967912 1.54582067276559 1.14295671998042 -0.0294226482371197 0.119953873582103
MMP0922 -0.541669837318983 0.78629492514046 0.080186076894295 0.307153505577487 0.351994690769419 0.842091793412851 0.528466469038738 -0.0104167914852094 -1.86770990706067 -0.611562719553691 -0.50672339620163 -0.200942036424784 -0.27957152893883 -0.235888477542138 0 0.532933227039645 0.829977976537152 1.03965662324127 0.541669837318983 -0.0611562719553691 -0.532933227039645 -1.25807188022474 -1.15323255687267 -1.74732205586769 -1.49396035776687 -1.56385324000158 -1.51143357832555 -1.50269696804621 -1.6599559530743 -1.06586645407929 1.22312543910738 1.50269696804621 1.24059865966606 0.908607469051198 0.707665432626414 1.34543798301812 0.270834918659492 0.532933227039645 -0.908607469051198 0.131049154190076
MMP0923 -0.673352636206307 0.469893566273466 0.086573161584642 0.498096578121199 0.286939275801945 0.532220064821963 0.491971849739011 0.352707187633085 -2.08537215516675 -0.615221473368352 -0.198614806363011 -0.140483643525057 -0.392385349156193 -0.169549224944034 -0.0629754264077841 0.440827984854489 0.779926434742557 0.925254341837443 0.673352636206307 -0.150172170664716 0.198614806363011 -0.683041163345966 -0.818680543301193 -2.08787759859653 -1.66158240445153 -1.56469713305494 -1.86504147438437 -1.37092659026176 -1.89410705580335 -0.334254186318239 1.01245108609437 1.85535294724472 1.89410705580335 1.26435279172551 0.818680543301193 1.1480904660496 0.140483643525057 0.392385349156193 -1.04151666751335 -0.053286899268125
MMP0924 -0.229567439603399 0.859026548193366 0.754081859285628 1.17005952611644 0.441541304581276 1.02337501123183 1.25766896301142 0.787409119789618 -3.70452542590951 -0.762756331585489 -0.140702624273051 0.14810802555058 -0.355459261321393 -0.333243057488806 -0.00740540127752902 0.436918675374212 0.407297070264096 0.710918522642785 0.348053860043864 -0.325837656211277 -0.177729630660696 -1.2515128159024 -1.07378318524171 -1.39962084145298 -1.39221544017545 -0.925675159691127 -0.866431949470895 -0.814594140528192 -0.955296764801243 -1.02935077757653 0.814594140528192 1.01453997502148 1.39221544017545 0.97751296863383 0.45172947792927 0.851621146915837 0.333243057488806 0.192540433215754 -0.45172947792927 0.236972840880928
MMP0925 -0.0156307505056079 0.901373279156722 0.849990521429644 0.943626480230987 0.881751461391265 1.07325817654643 1.16501201062814 0.873595565028447 -2.84745367371959 -0.416820013482877 -0.29698425960655 -0.0364717511797517 -0.0677332521909676 0.0625230020224316 0.224040757247047 0.573127518538956 0.729435023595036 0.833640026965755 0.604389019550172 -0.234461257584119 -0.791958025617467 -1.38592654483057 -1.12541403640377 -1.1306242865723 -1.04205003370719 -0.781537525280395 -0.64607102089846 -0.427240513819949 -0.583548018876028 -1.18272678825766 1.03162953337012 0.573127518538956 0.64607102089846 0.651281271066996 0.265722758595334 1.10457303572963 0.734645273763571 0.56791726837042 -0.416820013482877 0.578337768707492
MMP0926 -0.106027696883355 0.736303450578855 0.837307207648648 1.10896074627178 0.794661860699042 1.31110501846906 1.42769262039908 1.32466996639122 -2.65641967895343 -0.288630952626911 -0.55959062243993 -0.176712828138925 -0.0824659864648317 -0.0176712828138925 0.159041545325033 0.471234208370467 0.541919339626037 0.6302757536955 0.441782070347313 -0.318083090650065 -0.430001215138051 -1.32534621104194 -0.960139699554827 -0.983701409973351 -0.918906706322411 -0.795207726625163 -0.77164601620664 -0.365206511487112 -0.477124635975098 -0.948358844345565 0.98370140997335 0.530138484416776 0.942468416740934 0.565481050044561 0.129589407301878 1.00137269278724 0.671508746927916 0.706851312555701 -0.170822400534294 0.742193878183486
MMP0927 -0.202948406467118 0.760299254078309 0.346128440589895 0.809071712131744 0.541171903636376 0.868341582608188 1.04186552345091 1.04669829447607 -2.47110524343072 -0.536147282756417 -0.705775801594606 -0.136308631209259 -0.287762665886213 -0.227181052015431 0.0333198876289299 0.305937150047447 0.348344279756994 0.536147282756417 0.293820827273291 -0.481623830272714 -0.948102257077732 -1.5660347185597 -0.935985934303576 -1.17225422839962 -1.06320732343222 -0.984451225400201 -0.845113513497404 -0.766357415465387 -0.845113513497404 -1.25101032643164 0.960218579851889 0.596728896627199 1.15407974423839 1.08138180759345 0.596728896627199 0.948102257077732 0.572496251078886 0.457391184724401 -0.2635300203379 0.578554412465964
MMP0928 -0.192234395800378 0.715364063060424 0.297936558244351 0.977841877712391 0.543734616658113 0.855369741222295 0.910581810628283 0.941128694388984 -2.22616569349098 -0.633428091079935 -0.803602802116336 -0.154417793347845 -0.375014640987623 -0.274170367780868 -0.167023327498689 0.179628861649534 0.299381436082557 0.494767215420646 0.286775901931712 -0.683850227683313 -1.13134669003829 -1.40866844135687 -0.690152994758736 -1.04310795098238 -1.06201625220865 -0.935960910700203 -0.967474746077314 -0.721666830135847 -0.935960910700203 -1.34564077060265 0.847722171644292 -0.00945415061313337 0.961171979001892 1.09983285466118 0.929658143624781 0.81620833626718 0.583005954476557 0.58930872155198 -0.0535735201410891 0.583005954476557
MMP0929 -0.785698831467682 0.424332121524358 0.19617283527009 0.315586042976366 0.140215922968786 0.585563736153886 0.56051086108491 0.318140779684843 -3.52879406102253 -0.80212459101056 -1.08136250323949 -0.522886678781628 -0.424332121524358 -0.468134146972033 -0.183420981562142 0.353153830171885 0.539312438324506 0.687144274210411 0.714520540115209 -0.851401869639195 -1.37155092183034 -1.59603630224968 -1.21824383276348 -1.38250142819226 -1.49200649181145 -1.42630345363994 -1.36060041546842 -0.873302882363033 -0.878778135543992 -1.41535294727802 1.14706554141101 0.287450792000371 0.725471046477128 0.654292755124655 0.39695585561956 1.2018180732206 1.04851098415374 0.977332692801263 -0.0958169306667905 0.375054842895723
MMP0930 -0.193909429909965 0.917837968240499 0.689982968985418 2.05641962195832 0.712683411616771 0.901421337358415 1.20508833940587 0.877942593984585 -3.8958946578447 -0.0215454922122183 -0.00430909844244366 -0.254236808104176 -0.469691730226359 -0.495546320881021 -0.357655170722824 -0.40074615514726 -0.409364352032147 -0.478309927111246 -0.495546320881021 -0.504164517765908 -0.564491895960119 -0.935074362010274 -0.866128786931175 -1.47802076575817 -1.53834814395239 -1.23671125298133 -0.779946818082302 -0.952310755780048 -0.943692558895161 -0.642055667924105 0.443837139571697 0.00430909844244365 0.486928123996133 0.607582880384556 -0.00430909844244366 0.469691730226359 0.512782714650795 0.685146652348541 0.202527626794852 0.711001243003203
MMP0931 0.00242606401640998 0.807879317464523 0.845595903349879 1.14378475623778 0.825950345355684 0.987642761816065 1.07966283137228 0.811270954959464 -3.29289733965842 -0.672019732545564 -0.414856946806106 -0.312962258116887 -0.337222898280987 -0.278997361887148 -0.0752079845087093 0.0460952163117896 0.172250545165108 0.240180337624588 0.143137776968189 -0.492490995331226 -0.880661237956822 -1.10385912746654 -0.924330390252202 -1.37072616927164 -1.33190914500908 -1.13782402369628 -0.909774006153742 -0.948591030416302 -1.00196443877732 -1.10385912746654 0.589533555987625 0.0218345761476898 0.317814386149707 0.220771825493308 -0.00242606401640998 0.638054836315824 0.735097396972223 0.638054836315824 0.157694161066649 0.875809109924002
MMP0932 -0.150312596961221 0.995820954868092 0.70335911908914 1.11323602412393 0.751341486668435 1.04121533409828 1.21561097776648 1.21579951360424 -2.86722679742194 -1.13360750208254 -0.745299959932723 -0.620039462465038 -0.651354586831959 -0.613776437591654 -0.212942845695064 0.0626302487338422 0.244257970061985 0.494778964997354 0.269310069555522 -0.782878109173028 -1.50312596961221 -1.81627721328143 -1.59707134271298 -2.04174610872326 -1.99790493460957 -1.67849066606697 -1.55323016859929 -1.35281337265099 -1.63464949195328 -1.86011838739512 0.663880636578728 0.457200815757048 0.695195760945649 0.569935263477965 0.413359641643359 0.764089034552875 0.60751341271827 0.419622666516743 -0.306888218795827 0.72651088531257
MMP0933 -0.373583170469962 0.97781334183877 0.365366868090985 1.01675324110497 0.637323857854677 1.18466052192763 1.24959379893594 1.08491362049919 -2.20526721171356 -0.782900383332703 -0.79589458056644 -0.555501931742291 -0.549004833125422 -0.425559959404913 -0.334600578768748 0.20465860643137 0.32810348015188 0.425559959404913 0.334600578768748 -0.854368468118261 -1.63402030214253 -2.05633171223901 -1.58204351320758 -2.21875917766073 -2.01085202192092 -1.54955802012323 -1.59503771044131 -1.0752698210918 -1.57554641459071 -1.98486362745345 0.691941002696538 0.763409087482096 1.01029883492311 0.886853961202605 0.730923594397751 0.769906186098965 0.724426495780882 0.334600578768748 -0.510022241424209 0.477536748339864
MMP0945 0.0671800754269271 0.0805560337968275 0.0264516331623757 0.546683798615748 0.421860291424923 0.0369207015074127 0.0876554173333607 -0.169642070069662 -3.30875189417766 -0.320722717300184 -0.52136209284869 0.281195409345333 -0.735377426767097 -0.708625510027296 -0.588241884698192 -0.347474634039985 -0.213715050340981 -0.0799554666419773 -0.400978467519587 0.0404281586871263 0.388203076304537 -0.200339091971081 -0.962768719055403 -1.43092726200192 -1.33729555341261 -1.13665617786411 -1.19016001134371 -1.09652830275441 -1.0028965941651 0.0538041170570267 0.923241411100552 1.39139995404707 0.85636161925105 0.682474160442345 0.762729910661748 0.923241411100552 -0.213715050340981 -0.0264516331623757 0.281195409345333 1.29776824545776
MMP1230 0.0447375969474003 -0.141095498064878 -0.33940171041438 0.168317713246428 0.105746292318106 -0.130243272044009 -0.232388008857462 -0.50764009357736 -2.17614223430598 0.368224836413218 -0.47834815197605 0.161743619732909 0.196157155846294 0.326928593077156 0.423286494194634 0.402638372526603 0.464582737530696 0.471465444753373 0.368224836413218 0.347576714745187 -0.994551193676823 -1.2698594825839 -0.953254950340761 -1.38686550536941 -1.48322340648689 -1.29739031147461 -1.03584743701288 -0.994551193676823 -1.13908804535304 -1.20791511757981 0.388872958081249 1.5107542353776 1.44192716315083 1.13220533813036 0.753656440883129 0.498996273644081 0.767421855328483 -0.25121881362771 -0.306280471409125 0.560940638648173
MMP1231 0.0264747256534959 -0.306350396847595 -0.191109319971226 -0.508302849177406 -0.183367338640996 -0.289478023931793 -0.285493184382161 -1.08086789826824 -2.1669084738199 -0.0113463109943554 -0.548405031393843 0.230708323551893 0.245836738211033 0.412249299461579 0.646739726678256 0.472762958098141 0.329043018836306 0.253400945540603 0.427377714120719 0.117245213608339 -1.10059216645247 -0.737510214633099 -1.36533942298743 -1.60739405753368 -1.69816454548852 -1.51662356957884 -1.34264680099872 -1.14597741042989 -1.06277112980462 -0.76776704395138 0.381992470143298 1.31995417901001 1.53175198423798 1.30482576435087 0.722381799973959 0.434941921450289 1.00225747116806 0.0718599696309173 -0.117245213608339 0.835844909917513
MMP1674 -0.634918183127027 1.31098847071599 0.540267243515495 1.52529163493461 1.12188468596606 1.75039961927543 1.9148063095071 1.77375987592249 -1.48446578435685 -1.22868426179212 -1.18753215733018 -0.546735102137162 -1.08759133220833 -1.05231809981239 -0.687828031720946 0.229276010573648 0.252791498837612 0.446794277015315 0.252791498837612 -0.946498402624549 0.141092929583784 -0.440915404949324 -0.464430893213288 -2.2810023616045 -2.33979108226441 -2.03408973483288 -1.44620252823378 -0.399763300487387 -0.164608417847748 -0.0587887206599099 1.18165328526419 0.987650507086486 0.540856230071171 0.0587887206599099 -0.23515488263964 1.25807862212207 0.505582997675225 0.670191415522973 -0.858315321634684 0.464430893213288
MMP1675 -0.418383129044771 0.946867081522377 0.0857982623850293 1.04090357196027 0.809466192686565 1.55178926677088 1.67063292605906 1.53711136738493 -3.96265128766502 -0.0220201646865669 -0.311428043424303 -0.0975178721833678 -0.732956910281441 -0.588252970912573 -0.317719519049037 0.103809347808101 0.229638860302769 0.30513656779957 0.154141152805968 -0.412091653420038 0.00943721343710011 -0.449840507168438 -0.588252970912573 -1.30548119213218 -1.31177266775691 -1.10415397214071 -0.607127397786773 -0.355468372797437 -0.0220201646865669 -0.531629690289972 0.921701179023443 0.865077898400843 1.00978183776971 0.745539861530908 0.30513656779957 0.927992654648176 0.481297885292105 0.871369374025576 -0.223347384678036 0.607127397786773
MMP1676 -0.540359874308328 0.641677350741139 -0.154890328169873 0.918288914544759 0.687203615781396 1.53549914167463 1.75001299451963 1.41512739403648 -4.21296370347472 -0.324215924584997 -0.249916441867602 -0.182371457579061 -0.621413855454577 -0.472814890019787 -0.276934435583018 0 0.0202634952865623 0.135089968577082 0 -0.614659357025723 0.439042397875516 -0.37825191201583 -0.44579689630437 -1.31712719362655 -1.41169017163051 -1.19554622190718 -0.702467836600826 -0.141844467005936 -0.101317476432812 0.0067544984288541 0.817294309891346 -0.0742994827173951 -0.067544984288541 0.222898448152185 0.081053981146249 0.790276316175929 0.425533401017808 0.864575798893324 -0.11482647329052 0.391760908873538
MMP1719 -0.615967411650319 0.789767345228002 0.15256384620539 1.02167465403957 0.595044041476159 1.03783199042343 1.03752423163517 0.788239618253041 -3.69211275995398 -0.442167478072636 -0.365491036788364 -0.273479307247237 -0.45750276632949 -0.334820460274655 -0.125238187430978 0.278591069999522 0.396161613302072 0.508620393852338 0.19169110321068 -0.682420327430021 -0.932896702291977 -1.11692016137423 -1.38273182449304 -1.72010816614384 -1.633208199355 -1.27538480669506 -0.559738021375186 -0.631302699907173 -0.580185072384325 -1.08624958486052 1.49519060504331 0.518843919356908 0.396161613302072 0.71309090394373 0.656861513668597 1.4645200285296 0.769320294218863 0.692643852934591 -0.605743886145749 0.462614529081775
[+] Show/hide bicluster #98 motif PSSM #1. bicluster 98 motif PSSM #1 Methanococcus maripaludis S2 14x4
POSITION A C G T
1 1 0 0 0
2 0.111111 0.888889 0 0
3 0.222222 0.777778 0 0
4 0 0.222222 0 0.777778
5 1 0 0 0
6 0.222222 0.666667 0 0.111111
7 1 0 0 0
8 0 0.444444 0 0.555556
9 1 0 0 0
10 0.888889 0.111111 0 0
11 1 0 0 0
12 0.666667 0.222222 0.111111 0
13 1 0 0 0
14 0.222222 0.555556 0.111111 0.111111 [+] Show/hide bicluster #98 motif PSSM #2. bicluster 98 motif PSSM #2 Methanococcus maripaludis S2 15x4
POSITION A C G T
1 0 0.5 0.5 0
2 0 0.5 0.5 0
3 0 1 0 0
4 0 0 1 0
5 0 0.5 0.5 0
6 0 0.5 0 0.5
7 0 0 0.5 0.5
8 1 0 0 0
9 0 0 0 1
10 0 1 0 0
11 0.5 0 0.5 0
12 0 0 1 0
13 0 0 1 0
14 0.5 0 0.5 0
15 0 0 1 0 |