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[+] Show/hide bicluster #97 rows and columns.
bicluster 97
Methanococcus maripaludis S2
9x40
[+] Show/hide bicluster #97 rows (genes).
bicluster 97 genes
Methanococcus maripaludis S2
9
[+] Show/hide bicluster #97 rows (short gene names).
bicluster 97 short names
Methanococcus maripaludis S2
9
short_name
[+] Show/hide bicluster #97 rows (long gene names).
bicluster 97 long names
Methanococcus maripaludis S2
9
long_name
[+] Show/hide bicluster #97 rows (NCBI RefSeq gene IDs).
bicluster 97 NCBI RefSeq IDs
Methanococcus maripaludis S2
18
[+] Show/hide bicluster #97 gene upstream sequences.
bicluster 97 upstream sequences
Methanococcus maripaludis S2
9
upstream
[+] Show/hide bicluster #97 columns (arrays; conditions).
bicluster 97 arrays
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #97 ratios.
bicluster 97 ratios
Methanococcus maripaludis S2
9x40
GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0443 0.402909305670477 0.932205904876841 -0.183927790155047 0.248245768644073 0.628872015521134 0.606445216932405 0.519198106976258 -1.04787442350551 -0.656034777334086 -0.840027892011088 0.273674245361078 0.193852590464097 0 -0.0608164989691285 0.167245372165103 0.0418113430412758 -0.589159833763433 -0.56635364665001 -0.0418113430412759 0.916048515722499 1.27334544716613 1.08709491907317 0.969262952320486 0.380103118557053 -0.319286619587925 -0.182449496907386 -0.843828923196658 -0.395307243299336 -1.88531146804298 -1.2771464783517 -1.33036091494969 -0.402909305670477 -0.28127630773222 0.581557771392292 1.60783619149634 0.992069139433909 0.794415517784242 0.311684557216784 0.600562927320144 -0.201454652835238
MMP0444 0.114790600558705 0.961463466600755 -0.184321313409221 0.251258773677683 0.607543278048917 0.480294481805758 0.450407077438045 -0.790435400148297 -0.703137510920035 -0.400760166862848 0.420898868715252 0.441037570567656 -0.187289927227361 -0.018124831667164 0.018124831667164 0.191317667597842 -0.437009830197175 -0.392704686121886 -0.114790600558705 0.956588337989209 1.3795010768897 1.41172299985355 0.972699299471132 0.396732426492367 -0.195345407968323 -0.151040263893033 -0.77936776168805 -0.336316320935154 -1.8225525176426 -1.22644694281143 -1.36339011540778 -0.32020535945323 -0.110762860188224 0.718951656130837 1.68560934504625 1.02505992428738 0.867978049838629 0.360482763158039 0.606174925757372 -0.199373148338804
MMP1400 0.651329798767904 0.959765567762014 -0.0305531125118296 0.489065105533873 0.693642346235538 0.687195307255523 0.627909114063589 -1.33784024267556 -0.427278768558033 -0.523271736637266 0.240660840900683 0.585092870079643 -0.103771188278276 0.0154552833605943 0.125850164507697 0.240660840900683 -0.558598098604338 -0.320145155326597 -0.262739817130104 1.18564102351988 1.88775246761545 1.85684190089426 1.3181148808964 0.470282193686656 -0.35547151729367 -0.152344935983001 -0.677824570243209 -0.532103327129034 -1.0134250089304 -1.21213579499518 -1.19888840925753 -0.505608555653729 -0.417292650736047 0.532103327129034 1.77735758646835 1.08407773286455 0.638082413030252 0.0684448263112035 0.426124241227815 -0.37755049352309
MMP1401 0.219026584927276 0.786176681526693 -0.013841496524681 0.433831023854303 0.52147134309187 0.59119927313234 0.618994361075331 -1.11740950947043 -0.77460339900209 -0.761302170774013 0.54276305774026 0.615717755838961 -0.136627568303889 0.013841496524681 0.105034869148057 0.405972998805197 -0.391969011649341 -0.355491662599991 -0.460364041116873 0.953133234545451 1.78299292541817 1.62340452332726 1.1355199797922 0.278302277132471 -0.405648017542847 -0.305335307657134 -0.720265153093494 -0.569796088264924 -1.15343367305453 -1.29934306925193 -1.39965577913764 -0.528759070584405 -0.214141935033758 0.451569685116885 1.75107524499999 0.998729920857139 0.62027742447013 0.0184011651558498 0.351256975231171 -0.255178952714277
MMP1402 0.510568985811615 1.10021035904406 -0.137163541901503 0.380572699162477 0.703219080267765 0.751074606873323 0.714164139880715 -1.78579223209549 -1.67855393524946 -0.707834275784285 0.382926739358712 0.460285676602896 -0.116038405866276 -0.0386794686220921 0.19726528997267 0.259152439768017 -0.727174010095331 -0.468021570327314 -0.444813889154059 0.881891884583699 1.67095304447438 1.56265053233252 1.06755333396974 0.371322898772084 -0.309435748976737 -0.174057608799414 -0.742645797544168 -0.522172826398243 -1.05981744024532 -1.16425200552497 -1.17972379297381 -0.58405997619359 -0.359719058185456 0.417738261118594 1.73284019426972 1.07142128083195 0.723306063233122 0.166321715074996 0.448681836016268 -0.247548599181389
MMP1403 0.395760921049437 0.818298187935129 -0.147461869426163 0.368560133265385 0.560754382356654 0.636849526851932 0.656355112127036 -1.49982963105473 -0.972886834667352 -0.624681453813328 0.314280731421612 0.64408149896281 -0.0892402076876182 0.0271600632092751 0.0737201715680324 0.279360650152544 -0.547081273215399 -0.372480866870059 -0.485001128737056 0.919562140085458 1.60632373837713 1.68392391897506 1.18728276314831 0.481121119707159 -0.29488068627213 -0.252200586943269 -0.667361553142189 -0.58976137254426 -1.10580257352049 -1.33472310628438 -1.17564273605862 -0.601401399633949 -0.279360650152544 0.477241110677263 1.83136426211112 1.10968258255038 0.845841968517425 0.217280505674201 0.430681002318505 -0.318160740451508
MMP1404 0.222258308637074 0.772316065699366 -0.0637814359066859 0.342951404186825 0.531394784866466 0.555015659624293 0.535409168052726 -1.48836451835367 -1.08564606144642 -0.709293906693965 0.237719756194435 0.577871602456391 -0.110162813846202 0.00579804283401062 0.0367209379487339 0.257046565641137 -0.608794497571115 -0.206796861079712 -0.767274335034071 0.778870420702093 1.59446177935292 1.67176901713973 1.12675299074273 0.353680612874648 -0.229989032415754 -0.226123670526414 -0.604929135681774 -0.616525221349795 -1.06877256240262 -1.54034671290215 -1.15767588585745 -0.620390583239136 -0.365276698542669 0.353680612874648 1.66017293147171 1.14994516207877 0.817524039595497 0.210662222969052 0.369142060432009 -0.392334231768052
MMP1405 0.361665186175373 0.882445012885622 -0.0540839867979612 0.355103091160385 0.526490649438025 0.519557215644882 0.484145142026713 -1.75684315430793 -1.513829233534 -0.654804337075411 0.312174160698743 0.586278301800078 -0.167508086228594 0.0304560156779261 0.0494910254766299 0.19796410190652 -0.689067354713078 -0.236034121503927 -0.84896143702219 0.788049405666338 1.3819417113859 1.46950275645993 1.02027652521052 0.304560156779261 -0.228420117584446 -0.140859072510408 -0.502524258685781 -0.49871725672604 -0.940329484055969 -1.75122090148075 -1.3172226780703 -0.49871725672604 -0.39973520577278 0.312174160698743 1.61036182897034 0.974592501693635 0.719523370391004 0.0875610450740375 0.392121201853299 -0.323595166577965
MMP1433 0.583160596253941 0.553243452087906 -0.291641567371666 0.247495902770468 0.426195613573695 0.416855515339017 0.418543484899501 -1.0575858751835 -1.0362611949385 -0.665401193161548 0.631757312608436 0.785023879572613 0.00373820895034578 0.164481193815214 0.242983581772475 0.355129850282849 -0.246721790722821 -0.403726566637344 -0.340177014481465 0.908384774934023 1.39061372952863 1.30089671472033 0.986887162891284 0.366344477133886 -0.16821940276556 -0.00373820895034578 -0.69904507371466 -0.609328058906361 -1.08408059560027 -1.43921044588312 -1.70836149030802 -0.579422387303595 -0.422417611389072 0.29158029812697 1.49528358013831 0.949505073387826 0.523349253048408 -0.0747641790069155 0.317747760779391 -0.441108656140801
[+] Show/hide bicluster #97 motif PSSM #1. bicluster 97 motif PSSM #1 Methanococcus maripaludis S2 16x4
POSITION A C G T
1 0 0 0 1
2 0 1 0 0
3 0.5 0 0 0.5
4 0.5 0 0.5 0
5 0 1 0 0
6 0.25 0 0 0.75
7 1 0 0 0
8 0.25 0.75 0 0
9 0 0 0 1
10 0 0 0.25 0.75
11 0.5 0.25 0.25 0
12 0.25 0 0.5 0.25
13 0 0 0.5 0.5
14 0 0.75 0 0.25
15 0 0 0.75 0.25
16 0 0.25 0.75 0 [+] Show/hide bicluster #97 motif PSSM #2. bicluster 97 motif PSSM #2 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 1 0 0 0
2 0 0.666667 0.333333 0
3 0 1 0 0
4 0 0 1 0
5 0 0 0 1
6 0 0 0.666667 0.333333
7 0.333333 0.666667 0 0
8 0.666667 0 0.333333 0
9 0 0.333333 0 0.666667
10 1 0 0 0
11 0 0 1 0 |