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[+] Show/hide bicluster #94 rows and columns.
bicluster 94
Methanococcus maripaludis S2
18x40
[+] Show/hide bicluster #94 rows (genes).
bicluster 94 genes
Methanococcus maripaludis S2
18
[+] Show/hide bicluster #94 rows (short gene names).
bicluster 94 short names
Methanococcus maripaludis S2
18
short_name
[+] Show/hide bicluster #94 rows (long gene names).
bicluster 94 long names
Methanococcus maripaludis S2
18
long_name
[+] Show/hide bicluster #94 rows (NCBI RefSeq gene IDs).
bicluster 94 NCBI RefSeq IDs
Methanococcus maripaludis S2
36
[+] Show/hide bicluster #94 gene upstream sequences.
bicluster 94 upstream sequences
Methanococcus maripaludis S2
18
upstream
[+] Show/hide bicluster #94 columns (arrays; conditions).
bicluster 94 arrays
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #94 ratios.
bicluster 94 ratios
Methanococcus maripaludis S2
18x40
GENES ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_minus30m
MMP0117 -0.541695234945632 -0.643692109840656 -0.597912805774815 0.886694503171147 -0.302169635158882 -0.371520043228134 -0.104025612103877 -0.00495360057637506 -0.00495360057637506 -0.252633629395131 -0.371520043228134 0.460684853602886 0.00495360057637513 -0.272448031700632 -1.25326094582291 -1.12446733083715 -0.807436893949145 -0.104025612103877 -0.381427244380884 -0.0643968074928766 -0.510220859366637 -0.401241646686385 -0.421056048991885 1.37214735965591 1.56038418155816 1.32261135389216 1.93685782536267 1.92695062420992 1.60001298616916 2.03592983689017 1.74862100346042 1.30279695158666 0.827251296254645 1.34242575619766 0.252633629395131 0.0643968074928766 0.0148608017291254 -0.104025612103877 0.153561617867629 0.549849663977638
MMP0276 -1.27011284841037 -1.09933101241743 -1.4220106536234 0.4662005896822 -0.0137117820494765 -0.198820839717409 -0.11655014742055 0.11655014742055 -0.0685589102473824 -0.178253166643194 -0.226244403816362 -0.0617030192226442 0.198820839717409 0.287947423039006 -0.205676730742147 -0.150829602544241 0.0137117820494765 0.301659205088483 0.665021429399609 0.39078578841008 0.397641679434818 0.383929897385341 0.11655014742055 1.56314315364032 0.850130487067542 1.84423468565459 2.05676730742147 1.83737879462985 1.68654919208561 2.13218210869359 2.00192017922357 1.54943137159084 1.04895132678495 0.603318410176965 -0.267379749964791 -0.397641679434818 -0.617030192226442 -0.617030192226442 -0.253667967915315 0.0822706922968589
MMP0312 -0.341205125432692 -0.745211002889045 -0.669512181954837 -0.504784523817107 -0.254707787247164 -0.254707787247164 -0.0879899628672021 0.0509415574494328 0.384377206209357 0.189873077766068 0.236183584538279 -0.106514165576087 0.421425611627126 0.588143436007088 0.0694657601583175 -0.171348875057183 -0.301018294019375 -0.643716044133742 -0.254707787247164 -0.699288652260395 -0.0879899628672021 0.19913517912051 -0.338066699437145 0.171348875057183 0.782647564450377 0.782647564450377 1.1809179226914 1.68107139583128 1.54213987551465 1.68107139583128 1.49582936874244 1.82926501750236 1.6625471931224 0.421425611627126 -0.263969888601606 -0.254707787247164 -0.263969888601606 -0.115776266930529 -0.347328800791587 0.0416794560949905
MMP0327 -0.63627013790872 -0.780024815782076 -0.791238290407426 -0.466468280661432 -0.0838971727808332 -0.298673935099766 -0.305385708922233 0.1107442680707 0.291962161277299 0.0637618513134332 0.0570500774909666 -0.298673935099766 0.956427769701498 0.432909411549099 -0.755074555027498 -0.627550852400632 -0.278538613632366 -0.291962161277299 0.0234912083786333 -0.352368125679499 -0.1107442680707 -0.0234912083786333 0.365791673324433 0.614127304755699 1.47323435403143 1.46652258020896 1.97661739071643 1.8423819142671 1.62760515194816 2.20481770068029 2.05044690276356 1.8021112713323 1.45309903256403 0.674533269157899 -0.929580674411631 -1.04368082939356 -0.849039388542031 -0.808768745607231 -0.768498102672432 -0.352368125679499
MMP0336 -1.31738729585575 -1.25151434423242 -3.04887929174628 0.475706968562502 0.249746158495314 -0.475706968562502 -0.237853484281251 0 -0.166497438996876 -0.202175461639063 -0.118926742140625 0.451921620134377 -0.130819416354688 0.368672900635939 -0.737345801271878 -0.808701846556254 -0.582741036489065 -0.297316855351564 -0.0237853484281251 -0.237853484281251 -0.499492316990627 -0.0832487194984378 0.261638832709376 0.130819416354688 0.523277665418753 2.16446670695938 3.23480738622502 2.0336472906047 1.01087730819532 0.915735914482817 0.832487194984379 0.97519928555313 0.963306611339067 0.273531506923439 -0.368672900635939 -0.249746158495314 -0.190282787425001 -0.499492316990627 -0.142712090568751 0.261638832709376
MMP0337 -0.479687516204287 -0.970140445599653 -1.44325751342837 0.581475399995569 -0.391377673073941 -0.134186630768208 -0.100639973076156 -0.0335466576920521 0.346648796151204 0.234826603844364 0.0559110961534201 0.346648796151204 0.626204276918305 0.0335466576920521 -0.738026469225145 -0.760390907686513 -0.704479811533093 -0.089457753845472 -0.190097726921628 -0.536746523072833 -0.480835426919413 -0.22364438461368 0.0894577538454722 0.693297592302409 1.28595521152866 2.22526162690612 2.73964371151758 2.18053274998338 1.54314625383439 2.29235494229022 2.09107499613791 1.78915507690944 1.35304852691277 0.693297592302409 -0.581475399995569 -0.648568715379673 -0.838666442301301 -0.503199865380781 -0.369013234612572 0.201279946152312
MMP0431 -0.620000837846774 -0.808038306509377 -0.911855938871176 -0.00280614087910162 -0.412502709227938 -0.367604455162312 -0.00841842263730487 0.457400963293564 0.446176399777158 0.412502709227938 0.451788681535361 0.165562311866996 0.614544852523255 0.221685129449028 -0.990567730322872 -0.979343166806465 -0.524748344392003 -0.367604455162312 -0.0813780854939469 -0.283420228789263 0.00280614087910162 0.137500903075979 0.317093919338483 0.395665863953328 1.18138531010178 1.2206712824092 1.50689765207757 1.70893979537289 2.11302408196352 2.54516977734517 2.55078205910337 2.11863636372172 1.53495906086859 0.440564118018954 -0.50229921735919 -0.799750150543961 -0.968118603290059 -0.956894039773652 -0.934444912740839 0.137500903075979
MMP0432 -0.987634459509265 -1.41968007191313 -1.33831312482697 -0.0853909289264931 -0.617442101468488 -0.361269314689009 -0.10509652790953 0.236467187796442 0.275878385762516 0.341563715705972 0.275878385762516 -0.197055989830369 0.0919594619208385 0.499208507570267 -1.38596046180693 -1.28743246689174 -0.85390928926493 -0.617442101468488 -0.177350390847332 -0.518914106553304 0.68969596440629 -0.197055989830369 -0.118233593898221 0.492639974575921 1.51076258869949 1.21517860395394 1.16919887299352 1.39909752779562 1.83262070542243 2.13477322316233 1.9442857663263 2.0296766952528 1.75379830949028 0.571462370508069 0.0197055989830368 -0.262741319773825 -0.663421832428907 -0.821066624293202 -0.52548263954765 0.604305035479797
MMP0433 -0.678133777646606 -1.06670967501375 -1.0508379442962 0.142095030506804 -0.373934290807379 -0.201924517035984 0 0.538465378762625 0.486114578049592 0.366455604991231 0.21688188866828 0.0822655439776233 -0.224360574484427 -0.112180287242214 -1.51069453486181 -1.32372738945812 -1.09936681497369 -0.478635892233445 -0.194445831219837 -0.568380122027216 -0.134616344690656 -0.112180287242214 -0.695517780901724 0.702996466717872 1.12180287242214 1.0694520717091 2.3109139171896 2.05663859944058 1.60791745047173 1.87715013985304 1.77244853842697 2.0117664845437 1.80236328169157 0.762825953247052 0.052350800713033 -0.0897442297937709 -0.575858807843363 -0.613252236924101 -0.418806405704264 0.792740696511643
MMP0548 -0.815124207705727 -1.0440701710112 -0.911901244677243 0.0585407594329489 -0.614677974045963 -0.439055695747117 -0.165865485060022 0.156108691821197 0.321974176881219 0.409785316030642 0.370758143075343 -0.156108691821197 0.575650801090664 -0.478082868702416 -1.336680673719 -1.20984236161428 -0.79030025234481 -0.819570632061284 -0.165865485060022 -0.731759492911861 -0.136595105343547 0.0975679323882481 0.00975679323882481 0 1.58060050468962 0.965922530643656 1.83427712889906 2.22454885845206 2.12698092606381 2.4391983097062 2.41968472322855 2.26357603140736 1.72695240327199 0.185379071537671 0.185379071537671 0 -0.634191560523613 -0.897624977971883 -0.839084218538934 0.253676624209445
MMP0549 -0.901977218389635 -1.29722353966435 -1.66224345772847 0.172131374320253 -0.621585518378693 -0.497268414702955 -0.0956285412890298 0.172131374320253 0.191257082578059 0.372951311027216 0.200819936706962 0.0286885623867089 0.506831268831857 -0.468579852316246 -1.58743378539789 -1.40573955694874 -0.87021972573017 -0.736339767925529 -0.468579852316246 -0.918033996374685 -0.286885623867089 -0.239071353222574 0 0.124317103675739 0.898908288116879 1.11885393308165 2.07513934597194 2.28552213680781 1.96994795055401 2.18033074138988 1.99863651294072 1.85519370100718 1.2909853074019 0.200819936706962 0.229508499093671 -0.0573771247734179 -0.659836934894305 -0.860656871601267 -0.659836934894305 0.0478142706445148
MMP0660 -0.326337406422056 -0.249592129461646 -0.670528306979655 0.0891406532417026 0.136682334970611 -0.196109437131746 -0.445703266208513 -0.00594271021611351 0.124796914538384 0.0653698123772486 0.124796914538384 0.112911494106157 0.148567755402838 0.730953356581961 -0.766609617878643 -0.766609617878643 -0.826036720039778 -0.469474107072967 -0.398161584479605 -0.528901209234102 -0.112911494106157 0.00594271021611351 -0.0178281306483405 0.136682334970611 1.7174432524568 1.18259933300659 1.15882849214213 1.37276605992222 1.46784942338004 1.81252661591462 1.76498493418571 1.88383913850798 1.64613072986344 0.243651118860654 -0.267421959725108 -0.564557470530783 -0.683411674853054 -0.69529709528528 -0.528901209234102 -0.0415989715127946
MMP0677 -0.301878368256592 -0.631047310232648 -0.639064539857511 0.03585165762551 -0.297056591754226 -0.368759907005245 -0.363638241630173 0.102433307501457 0.0614599845008743 0.0153649961252186 0.220231611128133 0.0409733230005829 -0.21510994575306 -0.491679876006994 -1.04994140188994 -0.962873090513697 -0.64532983725918 -0.266326599503788 -0.128041634376821 -0.338029914754808 -0.0973116421263842 -0.209988280377987 -0.373881572380318 0.624843175758888 1.36236298976938 1.25480801689285 1.77721788515028 2.17670778440596 2.21768110740655 2.23304610353176 2.23304610353176 2.14085612678045 1.86940786190159 0.619721510383816 0.235596607253351 -0.133163299751894 -0.445584887631338 -0.532653199007577 -0.312421587879444 0.973116421263842
MMP1145 -0.872208674375698 -1.24693538553677 -1.60259202450292 -0.408699823565603 -0.0497200454440088 -0.472049196175297 -0.450932738638732 0.0664204710070954 0.235352131299611 0.267026817604457 0.552098994348076 0.172002758689917 0.0980951573119419 -0.0180453591391622 -0.831028974296891 -0.883820118138302 -0.292559307114499 -0.472049196175297 -0.260884620809653 -0.472049196175297 0.0769786997753776 -0.0286035879074444 -0.0708365029805732 0.657681282030898 2.11471685205384 1.69238770132255 1.61848009994458 1.61848009994458 1.9035522766882 2.00913456437102 2.16750799589525 2.1991826822001 1.7240623876274 0.668239510799181 -0.260884620809653 -0.725446686614069 -0.926053033211431 -0.894378346906584 -0.672655542772658 0.731588883408874
MMP1241 -0.800346561232345 -0.991028249834236 -1.00817210807551 0.284753317630651 -0.0639242141619827 -0.238262980058299 -0.168527473699773 -0.0755467985550705 0.389356577168441 0.191772642485948 -0.0406790453758071 0.0871693829481584 0.831014784105776 -0.0755467985550705 -0.517205005492406 -0.424224330347704 -0.633430849423284 -0.517205005492406 -0.482337252313143 -0.831014784105776 -0.400979161561528 -0.575317927457845 0.307998486416826 0.517205005492406 0.947240628036654 1.44701175693943 2.48142176792424 1.77244411994589 1.02859871878827 1.70270861358736 1.58648276965648 1.2842955754362 0.865882537285039 0.598563096244021 -0.342866239596089 -0.366111408382265 -0.447469499133879 -0.203395226879036 0.0406790453758073 -0.122037136127422
MMP1372 -0.207493085560393 -0.742219189795577 -0.943217873821326 0.297246265005036 0.0440364837044498 -0.275228023152811 -0.341282748709486 -0.132109451113349 -0.154127692965574 -0.231191539448361 -0.231191539448361 0.220182418522249 0.49541044167506 0.198164176670024 0.209173297596136 -0.110091209261124 -0.0770638464827871 -0.0440364837044498 0.330273627783373 -0.121100330187237 0.099082088335012 0.0220182418522249 0.264218902226699 0.264218902226699 0.979811762424008 1.39815835761628 1.02384824612846 1.25503978557682 1.34311275298572 2.00366000855247 2.0366873713308 1.65136813891687 1.58531341336019 0.187155055743912 -0.693574618345084 -0.759629343901759 -0.814674948532321 -0.891738795015108 -0.836693190384546 -0.0770638464827871
MMP1548 -0.986259787831574 -1.28342410231176 -1.08860220437638 -0.582041901725713 -0.273675331275004 -0.304511988320075 -0.181165360139791 0.242838674229933 0.188874524401059 0.127201210310917 0.242838674229933 0.0424004034369725 0.242838674229933 -0.196583688662327 -0.767061843996138 -0.751643515473602 -0.281384495536272 -0.104073717527114 -0.235129509968665 -0.474113602067964 -0.158037867355988 -0.026982074914437 -0.0424004034369725 0.381603630932752 1.49943244881657 1.16022922132079 1.59194241995178 1.67674322682573 1.48401412029404 1.85405400483489 1.93114564744756 1.77696236222221 1.79238069074474 0.466404437806697 -0.080946224743311 -0.196583688662327 -0.304511988320075 -0.165747031617256 0.104073717527114 0.165747031617256
MMP1549 -0.78429255485758 -0.85244529269527 -1.40398067006019 0.613050594901073 0.0967974623528009 -0.39794512300596 -0.150573830326579 0.172084377516091 0.0215105471895112 0.150573830326579 0.139818556731824 0.451721490979738 0.881932434769964 -0.354924028626937 -1.6993332279714 -1.64555685999762 -0.946464076338498 -0.57002950052205 -0.39794512300596 -0.129063283137068 -0.150573830326579 -0.064531641568534 0.107552735947557 0.161329103921335 1.1400590010441 1.36591974653397 1.07552735947557 1.08628263307032 1.12930372744934 1.76386486953993 1.74235432235042 1.86066233189273 1.21534591620739 0.24737129267938 -0.365679302221693 -0.430210943790227 -0.774379698822408 -0.720603330848629 -0.301147660653159 -0.0537763679737784
[+] Show/hide bicluster #94 motif PSSM #1. bicluster 94 motif PSSM #1 Methanococcus maripaludis S2 18x4
POSITION A C G T
1 0 0 0.444444 0.555556
2 0.666667 0 0.222222 0.111111
3 0.111111 0.111111 0.444444 0.333333
4 0.777778 0 0 0.222222
5 0 0 0 1
6 0.555556 0 0.111111 0.333333
7 0.555556 0.111111 0.333333 0
8 0.777778 0 0 0.222222
9 0 0.111111 0.888889 0
10 0.111111 0.444444 0.444444 0
11 0 0 0.777778 0.222222
12 0 0.111111 0.888889 0
13 0 0 0.666667 0.333333
14 0.555556 0 0.444444 0
15 0.777778 0.111111 0.111111 0
16 0.222222 0.111111 0.555556 0.111111
17 1 0 0 0
18 0.555556 0 0.444444 0 [+] Show/hide bicluster #94 motif PSSM #2. bicluster 94 motif PSSM #2 Methanococcus maripaludis S2 21x4
POSITION A C G T
1 1 0 0 0
2 0.142857 0 0.428571 0.428571
3 0.285714 0.714286 0 0
4 0 0 0.857143 0.142857
5 0 0 0.142857 0.857143
6 0.142857 0 0 0.857143
7 0 0.571429 0.428571 0
8 0 0 0 1
9 0.571429 0.142857 0.285714 0
10 0 0 0.714286 0.285714
11 0.714286 0.285714 0 0
12 0.142857 0 0 0.857143
13 1 0 0 0
14 0.428571 0 0 0.571429
15 0 0 0 1
16 0.428571 0 0 0.571429
17 0.285714 0.571429 0 0.142857
18 0.428571 0 0.142857 0.428571
19 0.428571 0 0 0.571429
20 0.857143 0.142857 0 0
21 0 0.714286 0.285714 0 |