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[+] Show/hide bicluster #93 rows and columns.
bicluster 93
Methanococcus maripaludis S2
15x38
[+] Show/hide bicluster #93 rows (genes).
bicluster 93 genes
Methanococcus maripaludis S2
15
[+] Show/hide bicluster #93 rows (short gene names).
bicluster 93 short names
Methanococcus maripaludis S2
15
short_name
[+] Show/hide bicluster #93 rows (long gene names).
bicluster 93 long names
Methanococcus maripaludis S2
15
long_name
[+] Show/hide bicluster #93 rows (NCBI RefSeq gene IDs).
bicluster 93 NCBI RefSeq IDs
Methanococcus maripaludis S2
0
[+] Show/hide bicluster #93 gene upstream sequences.
bicluster 93 upstream sequences
Methanococcus maripaludis S2
15
upstream
[+] Show/hide bicluster #93 columns (arrays; conditions).
bicluster 93 arrays
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #93 ratios.
bicluster 93 ratios
Methanococcus maripaludis S2
15x38
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0300m
RNA_1 -0.619764869424844 0.170265074017814 -0.694145303221585 -1.12437888357958 -0.960260712453359 -1.19306044318991 -1.19203534528527 -1.15533684029946 -1.310229130284 -1.44384782767106 -2.15215053558517 -0.640196678306981 -0.163454471057102 0.320098339153491 1.19866612108541 -0.660628487189119 -0.0408636177642754 -1.0828858707533 -0.0544848236857004 -0.701492104953394 -1.47790084247463 1.12374948851757 0.497174016132018 0.701492104953394 1.70265074017814 1.90015822603881 0.667439090149832 0.333719545074916 0.0272424118428503 2.77191540501001 1.75032496090313 1.66178712241387 0.967105620421185 -0.217939294742802 -0.898999590814059 -0.817272355285508 -0.538037633896293 1.0284010470676
RNA_10 -0.0177637651983275 0.467779150222624 -1.11696274107506 -0.944330000330143 -1.05172414689696 -1.03372114523019 -1.37221322015234 -1.09521654104194 -0.859840665775233 -0.894109514982485 -1.81782530529552 -0.562519231280371 -0.0473700405288734 0.538834211015934 0.988849596040231 -0.663180567404227 0.0651338057272008 -1.23754230881682 0.0414487854627641 -0.657259312338118 -1.41517996080009 0.521070445817607 -0.0947400810577468 0.828975709255284 2.09612429340265 1.72308522423777 1.19609352335405 -0.106582591189965 -0.609889271809245 2.78891113613742 1.7408489894361 1.7408489894361 0.811211944056956 -0.0236850202644367 -0.361196559032659 -0.698708097800882 -0.515149190751498 1.26122732908125
RNA_11 -0.646133609107791 0.352125723482024 -0.794757890914892 -0.822235669621089 -0.739287778678299 -0.849095963393544 -0.891496126009461 -1.15371849092538 -0.671673930546855 -1.37089723413875 -2.69735141579919 -0.817068426332074 -0.304263974659224 0.0239308744113995 1.15893806078064 -0.379475294237909 0.0923048013011129 -0.646133609107791 0.495710969950421 -0.304263974659224 -0.611946645662934 1.08372674120196 0.379475294237909 0.564084896840135 2.03412432496897 1.52131987329612 1.39824680489464 0.0170934817224282 -0.659808394485734 2.67000184504331 1.78114079547703 1.56918162211892 0.741857106753389 -0.051280445167285 -0.208540477013626 -0.89911713859973 -0.769206677509275 1.17261284615858
RNA_12 -0.0506492007749702 0.177272202712395 -1.45285086796234 -1.30876738976956 -1.34440708609502 -1.4647625343383 -1.29876159583841 -1.44637092317589 -1.2560701948924 -0.943341364433819 -1.51314487315223 -0.943341364433819 -0.0126623001937426 0.69642651065584 0.905354463852591 -0.709088810849582 0.189934502906138 -1.39285302131168 -0.107629551646812 -0.835711812787008 -1.65876132538027 0.974997114918175 0.0823049512593266 0.709088810849582 1.53213832344285 1.44983337218352 0.595128109105899 0.0126623001937426 -0.462173957071603 2.92499134475453 1.34220382053671 1.35486612073045 0.645777309880869 -0.411524756296633 -0.601459259202771 -1.24723656908364 -0.728082261140196 0.734413411237067
RNA_15 0.462585563692965 0.328679216308159 -1.3776310948087 -1.07274221580231 -1.19412976832985 -1.01804911164407 -1.23471443277446 -1.35527746305462 -1.79914362543484 -0.955604388155205 -1.74686916815633 -0.651271780462464 -0.0121733043077096 0.559971998154642 0.92517112738593 -0.45649891153911 0.121733043077096 -1.17472386569398 0.170426260307935 -0.736484910616432 -1.18081051784783 0.681705041231738 0.115646390923241 1.18689717000169 1.66774269015622 1.44862321261744 0.992124301078333 -0.213032825384918 -0.699964997693303 2.77551338215779 1.62513612507923 1.49731642984828 0.237379434000337 -0.371285781385143 -0.742571562770286 -1.11994399630928 -1.07125077907845 0.766918171385706
RNA_18 -0.193751506293956 0.101801638900214 -0.925373593975569 -1.14611894762941 -1.09016647471102 -1.14117614966842 -0.911632612360096 -1.01740848872526 -0.8736719240197 -1.29714991501886 -1.29058206734788 -0.909646902430946 0.00328392383549078 0.640365147920702 1.26431067666395 -0.620661604907758 0.0755302482162878 -0.804561339695241 0.916214750101928 -0.489304651488126 -1.21833574296708 1.02786816050861 0.292269221358679 0.738882862985426 1.90139190074916 1.91452759609112 0.903079054759965 -0.33824415505555 -0.666636538604629 2.97195107111916 1.82914557636836 1.75689925198757 0.863671968734075 -0.213455049306901 -0.4630332608042 -1.02786816050861 -0.863671968734075 0.929350445443891
RNA_21 -0.243631468095925 0.474874895441211 -1.51972937645723 -0.448835522837649 -0.467729993833953 -0.73983523319743 -1.37255139185444 -1.18161779020758 -1.04836204739154 -1.08601823913946 -1.6393507260014 -0.805222648791618 -0.326218406433527 0.615272690615134 1.23467472814715 -0.739153098121537 0.43358142627241 -1.00343130080186 0.235372774262165 -0.43358142627241 -1.52372901232875 1.8458180718454 0.648307465950175 0.425322732438649 1.44114207399115 1.30900297265099 0.128009754423283 0.0536815099194412 -0.417064038604889 2.80382655656158 1.64760941983516 1.39158991098859 0.813481342625378 -0.45009881393993 -0.995172606968102 -1.16034648364331 -1.06124215763818 0.92084436246426
RNA_25 0.152864834665461 0.392652810611283 -1.11743031168769 -1.32549888839272 -1.20423081940245 -1.34192060606849 -1.23148004323806 -1.2113589306217 -1.02025344690042 -1.20193722942843 -1.97525345185371 -0.764324173327307 -0.122891337672234 0.308727019030245 1.01010684867177 -1.1060220390501 0.260769423841081 -1.20793192882708 0.188833031057335 -0.902202259496154 -1.28586302100947 0.848249964908344 0.254774724442435 0.74634007513137 1.60358208913768 1.45970930357019 0.812281768516471 -0.590477890766586 -1.02809094686771 2.60469688871149 1.4477199047729 1.3817782113878 0.00899204909796832 -0.548514994976067 -0.872228762502926 -1.43573050597561 -1.35779941379322 0.578488491969295
RNA_28 0.206042689807038 0.6930526838964 -1.00818310240487 -0.745986384565966 -0.799327907404582 -1.18377032253307 -1.24793803258553 -0.831693700008848 -0.201744938996121 -1.19504760088082 -1.63710282628501 -0.640605453763699 0.13861053677928 0.30344468862491 1.24000236956599 -0.52821853205077 -0.221027612702095 -0.52821853205077 0.565680839288413 -0.318429611519968 -0.715530068238986 0.992751141797546 0.325922072967496 0.655590376658757 1.94429374563368 1.51722344312455 1.23250990811846 0.295952227177382 -0.0262236150663503 2.24399220353483 2.01172589866144 1.99674097576638 0.228520074149624 -0.206042689807038 -0.775469759819215 -0.85788683574203 -1.08266067916789 0.887856681532145
RNA_29 -0.0122132013428967 0.354182838944003 -0.759767732562694 -0.604250090552027 -0.58228276710382 -0.594323432551346 -0.769970128010093 -1.09902045192606 -0.618864333999729 -1.33123894637574 -1.93579241284912 -1.12972112421794 -0.0305330033572417 0.763325083931041 1.01980231213187 -0.647299671173523 0.0793858087288281 -1.30070594301849 0.0366396040286898 -0.769431684602489 -1.48390396316194 0.836604291988421 0.0793858087288281 0.793858087288282 1.8075537987487 1.84419340277739 0.903776899374352 -0.207624422829243 -0.738898681245247 2.91284852028085 1.54496996987643 1.69763498666263 0.763325083931041 -0.311436634243865 -0.763325083931041 -0.854924094002766 -0.653406271844971 1.23353333563256
RNA_30 -0.115117060537268 0.560236361281372 -0.446847606895245 -0.739209223673257 -0.940316126786296 -0.952213889414241 -1.08066356231987 -0.883946126446414 -0.738400633765572 -1.15117060537268 -1.2432642538025 -0.621632126901248 0.130466001942237 0.437444830041619 1.45814943347206 0.306978828099382 -0.429770359339135 -0.575585302686341 1.0437280155379 0 -0.951634367108084 1.51954519909194 0.690702363223609 0.636981068306217 1.79582614438138 1.00535566202548 0.966983308513053 -0.0767447070248455 -0.583259773388826 2.86257757202674 1.90326873421617 1.84187296859629 0.498840595661495 -0.283955415991928 -0.882564130785723 -0.790470482355908 -0.943959896405599 1.07442589834784
RNA_32 -0.102484013967676 0.403530804997725 -0.826874402453511 -0.864762992222145 -0.481056637239069 -0.620367115870371 -0.686696249323203 -0.659991061042269 -0.45001305724735 -0.576472578568179 -1.60771796911792 -0.480393815473482 0.0128105017459595 0.871114118725248 1.10170315015252 -0.525230571584341 0.461178062854543 -1.1401346553904 -0.0320262543648988 -0.781440606503531 -1.44758669729343 0.80065635912247 0.0896735122217166 1.13372940451742 1.99843827236969 2.01124877411565 1.08889264840656 -0.26261528579217 -0.967192881819944 3.3563514574414 2.01124877411565 1.85752275316413 0.81346686086843 -0.0128105017459595 -0.53163582245732 -0.826277362614389 -0.640525087297976 1.21699766586615
RNA_35 -0.145182914364964 0.502090912178832 -1.13591158778666 -0.966648042414888 -1.2215904438481 -1.25464190898565 -1.29625214889654 -1.07809429482866 -1.62057530550891 -1.41553341505839 -1.95996934392701 -0.865048198091241 -0.139133626266423 0.550485216967154 0.865048198091241 -0.538386640770073 0.145182914364964 -0.931590367175183 0.260119388237226 -0.483943047883212 -1.4457798555511 1.11306901013139 0.211725083448905 0.689618843233577 1.69380066759124 1.92972290343431 0.659372402740876 0.0362957285912409 -0.326661557321168 2.72822893244161 1.5365191770292 1.54256846512774 0.901343926682482 -0.362957285912409 -0.750111724218978 -0.973935383864964 -0.82270318140146 0.877146774288322
RNA_4 -0.00342317307778589 0.325201442389659 -1.36140234121545 -0.780934211473373 -0.620901013860152 -0.833591623201261 -1.18951864557559 -1.65034830713539 -0.748061966497972 -0.688057788634963 -1.46854125037015 -0.879755480990973 0.023962211544501 0.872909134835401 0.783906634812968 -0.824984711746399 -0.0513475961667883 -1.54385105808144 -0.0650402884779319 -1.08514586565813 -1.70816336581516 1.06460682719141 0.236198942367226 0.557977211679099 1.65339259657058 1.59862182732601 0.475821057812238 -0.2909697116118 -0.688057788634963 3.13220336617409 1.454848558059 1.23576548108071 0.557977211679099 -0.489513750123382 -0.989297019480121 -1.20838009645842 -1.05091413488027 0.941372596391119
Unanno_41 -0.341548499079838 -0.00331600484543532 -0.296321900281518 -0.816492737049112 -0.809904505254211 -0.93418251079657 -1.05875998473652 -1.05316996988024 -0.778460675003642 -0.26196438278939 -1.44246210776436 -0.838949225895136 -0.202276295571555 0.659884964241629 1.40267004961914 -0.513980751042475 0.46755668320638 -1.2302377976565 -0.0829001211358831 -0.719573051459465 -1.48888617560046 0.832317216204266 0.0232120339180473 1.09096559414822 1.91333479581618 2.05260699932446 1.04454152631213 -0.129324188971977 -0.527244770424216 3.35248089873511 1.91996680550705 1.78732661168964 1.21034176858389 -0.149220218044589 -0.487452712278992 -0.726205061150335 -0.480820702588122 1.04454152631213
[+] Show/hide bicluster #93 motif PSSM #1. bicluster 93 motif PSSM #1 Methanococcus maripaludis S2 15x4
POSITION A C G T
1 0.272727 0.545455 0.090909 0.090909
2 0.272727 0.363636 0.363636 0
3 0 0 1 0
4 0 0 0 1
5 0.272727 0 0.636364 0.090909
6 0 0 1 0
7 0 0.363636 0 0.636364
8 0 0.363636 0.090909 0.545455
9 0 0.363636 0.181818 0.454545
10 1 0 0 0
11 0 0 1 0
12 0 0.636364 0 0.363636
13 0 0.636364 0 0.363636
14 0 0.090909 0.181818 0.727273
15 0 0 1 0 [+] Show/hide bicluster #93 motif PSSM #2. bicluster 93 motif PSSM #2 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0 0.888889 0 0.111111
2 0 1 0 0
3 0.111111 0 0.222222 0.666667
4 0.222222 0 0.777778 0
5 0 1 0 0
6 0.333333 0.333333 0.333333 0
7 0.444444 0.222222 0.111111 0.222222
8 0 0.444444 0 0.555556
9 0 0.111111 0.333333 0.555556
10 0.111111 0 0.555556 0.333333
11 0 0.444444 0.555556 0 |