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[+] Show/hide bicluster #88 rows and columns.
bicluster 88
Methanococcus maripaludis S2
16x39
[+] Show/hide bicluster #88 rows (genes).
bicluster 88 genes
Methanococcus maripaludis S2
16
[+] Show/hide bicluster #88 rows (short gene names).
bicluster 88 short names
Methanococcus maripaludis S2
16
short_name
[+] Show/hide bicluster #88 rows (long gene names).
bicluster 88 long names
Methanococcus maripaludis S2
16
long_name
[+] Show/hide bicluster #88 rows (NCBI RefSeq gene IDs).
bicluster 88 NCBI RefSeq IDs
Methanococcus maripaludis S2
0
[+] Show/hide bicluster #88 gene upstream sequences.
bicluster 88 upstream sequences
Methanococcus maripaludis S2
16
upstream
[+] Show/hide bicluster #88 columns (arrays; conditions).
bicluster 88 arrays
Methanococcus maripaludis S2
39
[+] Show/hide bicluster #88 ratios.
bicluster 88 ratios
Methanococcus maripaludis S2
16x39
GENES ss_HighFormate_HighH2 ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
RNA_13 -0.72202742617523 -1.42333092630501 -1.16535355113124 -1.0980996374162 -1.37155337939091 -1.25946352067901 -1.08558198779779 0.533015010946112 -0.585938487210265 -0.684224943129406 -0.260837133016182 -0.177671670315371 0.0264617381320765 0.0340222347412412 0.162550677097041 1.36466963795423 -0.306200112671171 -0.427168058417806 0.381805078762818 -0.759829909221053 0.782511399048548 0.268397629625347 0.510333521118618 1.66708950232082 1.0924917600243 0.162550677097041 0.366684085544489 2.4004576734098 2.68775654455805 2.39289717680063 1.68221049553915 0.215474153361194 -0.3213211058895 -1.23614119559843 -1.18321771933428 -0.585938487210265 -1.08493126341514 0.601059480428594 0.782511399048548
RNA_16 -0.158481785797007 -0.702727455061863 -1.09359833667894 -1.08871661117417 -1.04189642565111 -1.25835656877944 -1.2956351999068 0.401732898880786 -0.880863879197319 -1.05777377962189 -0.269050473562361 -0.114254310690866 0.114254310690866 0.357505423774644 -0.0036856229255118 0.762923945580942 -0.681840241219682 -0.733438962176847 -0.0405418521806298 -0.696582732921729 0.305906702817479 0.0405418521806298 0.578642799305352 1.86123957738346 1.2199411883444 0.210080506754172 0.61549902856047 2.29614308259385 2.67207662099605 2.36985554110408 1.99392200270188 0.0773980814357476 -0.350134177923621 -1.19782745079133 -1.10937250057905 -0.51230158664614 -1.16834246738724 0.608127782709446 0.785037683134012
RNA_2 -0.335410384293387 -1.54572489916282 -1.48555170026336 -1.33144712138511 -1.23415011841886 -1.59437340403393 -1.47535285299227 0.613225046031344 -1.29082178197758 -1.54153257427769 -0.0304918531175807 -0.037267820477043 0.111803461431129 0.335410384293387 0.220218939182527 1.4127891944479 -0.423497959966398 -0.626776980750269 0.450601829404247 -0.518361502998871 0.17278716766629 0.17278716766629 0.437049894685323 1.43989306388575 0.823280034174677 0.118579428790591 0.281202645417688 1.77869143185887 2.48339203724296 2.00229835472113 1.49410080276145 0.0304918531175807 -0.491257633561021 -1.29759774933704 -1.28404581461812 -0.904591642488226 -1.49410080276145 0.789400197377366 0.477705698842097
RNA_20 -0.499145649194079 -1.54634746023055 -1.21212817152296 -1.53466074130346 -1.5723295372361 -1.68366640762388 -1.34402114227157 1.06761708299845 -0.963628406083013 -0.783381366096263 0.0623932061492599 -0.0623932061492599 0.117853833837491 0.838841993784493 -0.131718990759549 1.17160575991388 -0.443685021505848 -0.388224393817617 0.478347913810992 -0.915100356855811 0.644729796875685 0.485280492272021 0.776448787635234 1.07454966145947 0.207977353830866 0.214909932291895 0.443685021505848 1.67075140910796 2.43333503982113 1.83713329217265 1.13001028914771 0.270370559980126 -0.700190424563916 -1.58062788911458 -1.69154914449104 -1.25479670144623 -1.61529078141973 0.415954707661732 0.249572824597039
RNA_21 -0.243631468095925 -1.51972937645723 -0.448835522837649 -0.73983523319743 -1.37255139185444 -1.18161779020758 -1.04836204739154 1.30074427881723 -1.08601823913946 -1.6393507260014 0.0206467345844005 0.0619402037532014 -0.326218406433527 0.615272690615134 -0.0949749790882422 1.23467472814715 -0.739153098121537 -1.00343130080186 0.235372774262165 -1.52372901232875 0.648307465950175 0.293183631098487 0.664824853617695 1.44114207399115 0.128009754423283 0.0536815099194412 0.0289054284181607 1.56502248149755 2.80382655656158 1.86233545951292 1.39158991098859 0.813481342625378 -0.45009881393993 -1.10253562680698 -1.16034648364331 -1.06124215763818 -1.06124215763818 1.08601823913946 0.92084436246426
RNA_22 -0.97278936489061 -0.723641899150242 -0.881891973329121 -1.02456302816946 -1.33508926925511 -1.67443084654004 -0.974194757577225 0.225687132654621 -1.01948325440536 -0.863836956022862 -0.31907491168412 -0.194557872978122 -0.256816392331121 0.163428613301623 0.607020563691741 1.60315687333973 -0.0311292596764995 0.0311292596764995 0.832707696346362 0.33463954152237 0.863836956022861 0.778231491912488 1.15178260803048 1.75880317172222 1.29186427657473 -0.0544762044338742 0.186775558058997 2.26465364146534 2.34247679065659 2.17126586243584 1.85997326567085 0.264598707250246 -0.0622585193529991 -1.36968742576598 -1.18291186770698 -0.552544359257866 -1.21404112738348 0.793796121750738 0.762666862074238
RNA_23 -0.231497595439286 -0.986149632013296 -1.42203508041568 -0.904997156732693 -1.11945549860996 -1.34807617635109 -1.01941989888734 0.0224029931070277 -1.26950294273157 -1.8594484278833 -0.358447889712444 -0.597413149520739 -0.0149353287380185 0.201626937963249 0.0522736505830647 1.08281133350634 -0.089611972428111 -0.664622128841822 0.224029931070277 -0.567542492044702 0.29123891039136 0.09707963679712 0.380850882819471 1.72503046924113 1.47112988069482 0.477930519616591 0.821443080591017 2.24029931070277 2.30004062565485 2.59127953604621 1.72503046924113 -0.350980225343434 -0.238965259808296 -1.06787600476832 -1.15748797719643 -0.29870657476037 -1.10521432661337 0.619816142627767 0.313641903498388
RNA_24 0.113075257598375 -1.03117165109671 -0.996823163866622 -1.29966750706705 -1.64026424540358 -1.87750607276155 -1.09883714620403 0.277548359559649 -1.10676691528107 -0.791526803188628 -0.5036988747564 -0.380344048285445 0.229577038154277 0.421462323775763 0.469433645181134 1.15473823668644 -0.428315369690816 -0.825792032763893 0.0171326147876327 -0.531111058416612 0.243283129984383 0.250136175899436 0.558523242076824 1.43571311920361 1.00397122655527 0.154193533088694 0.41460927786071 2.26493167492503 2.58702483293253 2.38828650139599 1.43571311920361 0.229577038154277 -0.215870946324171 -1.1752973744316 -0.969705996980007 -0.722996344038097 -1.25068087949718 0.579082379821983 0.764114619528416
RNA_26 -0.570559684550664 -1.00639891730054 -0.993429614382265 -1.21928235859429 -0.892479394851648 -1.40096938176167 -1.15104748798563 0.85001748922854 -0.725814020482817 -1.19157702827928 -0.0970339599575958 -0.15137297753385 -0.00388135839830384 0.322152747059218 0.135847543940634 1.69615362005878 0.0116440751949115 -0.174661127923673 0.811203905245502 -0.578322401347271 0.772390321262463 0.624898702126917 1.08289899312677 1.54866200092323 0.966458241177655 0.0194067919915192 0.166898411127065 2.1231030438722 2.6276796356517 2.10757761027898 1.47103483295715 0.298864596669395 -0.399779915025295 -1.49432298334698 -1.50208570014358 -0.98198367477087 -1.39340766499108 0.345440897449041 0.438593499008334
RNA_27 -0.556440165774264 -1.42242212186783 -1.46375328572485 -1.43610005989636 -1.5244119674166 -1.36077228524648 -1.04518856224575 0.859354338858478 -1.07007724187358 -1.15568342122347 -0.00329254535961103 -0.0164627267980552 0.12840926902483 0.4181532606706 0.0888987247094978 1.18202378410036 -0.266696174128493 -0.89886488317381 0.332547081320714 -1.08324742331203 0.437908532828267 0.233770720532383 0.760577978070147 1.35323614280013 1.10958778618892 0.332547081320714 0.424738351389823 1.65615031588435 2.43977611147177 1.9393092168109 1.3137255984848 -0.0428030896749432 -0.635461254404928 -1.2544597820118 -1.50469322934224 -0.714482343035593 -1.44542741286924 0.4181532606706 0.115239087586386
RNA_3 -0.651419622339684 -1.02480169398214 -1.27825948933418 -1.48746441289946 -1.73463033074627 -1.4276915765998 -1.20464452252302 0.992805306774385 -0.623551403202157 -0.832563046733607 -0.0522529108828624 -0.149791677864206 -0.00348352739219083 0.407572704886326 0.372737430964418 1.52926852517177 -0.191594006570495 -0.107989349157916 0.797727772811698 -0.240363390061167 0.978871197205621 0.386671540533181 1.18788284073707 1.48746619646548 0.574782019711486 -0.142824623079824 0.21249517092364 1.91942359309714 2.60219496196654 1.95425886701905 1.4804991416811 0.310033937904983 -0.393638595317563 -1.02067352591191 -1.22271811465898 -0.665353731908447 -1.02067352591191 0.7210901701835 0.644452567555302
RNA_5 -1.19691795109713 -1.29643746133575 -0.990225392955243 -1.25681354229811 -1.56601986173805 -1.37428798888108 -0.985434591260145 1.3825894338158 -1.00461534399565 -1.3162781899877 -0.381289652011551 -0.182355920527263 -0.39455190077717 0.00331556219140479 0.122675801081977 1.44226955326108 -0.182355920527263 -0.275191661886598 0.500649890902123 -0.659796876089553 1.00461534399565 0.328240656949074 1.05103321467532 1.6610966578938 0.825574985659792 0.321609532566265 0.520543264050552 1.82687476746404 2.29105347426071 1.90644826005775 1.74067015048751 0.85873060757384 0.0431023084882623 -0.368027403245932 -0.825574985659793 -0.261929413120978 -0.40118302515998 1.44226955326108 1.0377709659097
RNA_50 -0.235944403235464 -0.80851910299472 -0.777968045565028 -1.38762703863726 -1.40543226951226 -1.69693216779047 -1.40377823460328 1.31547085091553 -0.436335540229969 -1.30900662068991 0.19715902188169 0.0226248057897021 -0.229480173009835 0.766011281737056 -0.0484817266922188 1.08922279301851 -0.449264000681227 -0.947009728054672 0.358764777522418 -1.54171890881256 0.475120921583744 0.281194014814868 0.623798216773214 1.36718469272057 0.416942849553081 -0.0161605755640729 0.0161605755640729 1.20557893707984 2.95092109799971 1.48354083678189 1.19911470685421 0.358764777522418 -0.720761670157652 -1.05690164189037 -1.70332466445328 -1.11507971392103 -1.47707660655626 0.992259339634077 0.520370533163148
RNA_7 -0.777845749652045 -1.01066945249187 -0.868949496273263 -1.02539360378731 -1.44411164606125 -1.41834438129423 -1.01302122326041 1.28055828654507 -1.1718636839736 -1.14469003333074 -0.213992498812571 -0.152851784866122 -0.281926625419737 0.193612260830422 -0.0101901189910748 1.18545050929504 -0.0781242455982404 -0.268339800098304 -0.200405673491138 -0.872953526902076 0.988441542134258 0.268339800098304 0.709911623044879 1.73571693481308 0.66915114708058 0.675944559741297 0.608010433134131 1.58626185627731 2.53054621611691 2.19087558308109 1.84441153738454 0.709911623044879 -0.037363769633941 -0.370240990009052 -1.13110320800931 -0.431381703955501 -0.682737972402013 1.47756725370585 0.961267891491391
RNA_8 -0.7949596181222 -1.66316419271739 -1.50328093783482 -1.71620736621511 -1.65280051699977 -1.90831222479658 -1.04266266919261 0.90763106006078 -1.07037869841651 -1.84655974288228 0.0125190491042866 0.0563357209692898 -0.0813738191778629 0.212823834772873 0.106411917386436 1.13923346849008 -0.569616734245041 -0.70106674984005 0.13145001559501 -1.23938586132437 0.406869095889315 0.0876333437300064 0.582135783349328 1.31450015595009 0.519540537827895 0.331754801263595 0.306716703055022 1.60869780990083 2.37235980526231 1.60243828534869 1.22060728766794 0.463204816858605 -0.419388144993602 -0.381830997680742 -1.12671441938579 -0.650990553422904 -0.707326274392194 1.37083587691938 0.669769127079334
RNA_9 -0.585037682438501 -0.824923341907344 -0.388472383858298 -0.959464768165884 -1.78827830819298 -1.22495346754992 -0.611190562258827 1.52428185288399 -0.449722844323474 -1.19793430213598 0.210931953532249 -0.0119395445395613 0.115415597215759 0.513400415201134 0.0756171154172213 1.26957156937335 -0.577077986078794 -0.497481022481719 1.10241794581949 -0.998941893143291 0.855667358668556 0.258690131690494 0.919344929546216 1.86654879635141 0.608916771517624 -0.354206488006984 -0.242770738971079 1.7551130473155 2.90926901947309 1.8585890999917 1.65163699463931 0.640755556956454 -0.274609524409909 -1.07853885674037 -1.03874037494183 -0.640755556956454 -1.13425673125832 0.839747965949142 0.863627055028264
[+] Show/hide bicluster #88 motif PSSM #1. bicluster 88 motif PSSM #1 Methanococcus maripaludis S2 19x4
POSITION A C G T
1 0.13513 0.05237 0.67737 0.13513
2 0.13513 0.55237 0.05237 0.26013
3 0.51013 0.30237 0.05237 0.13513
4 0.25 0.125 0.625 0
5 0.625 0 0.375 0
6 0 0 1 0
7 0.25 0 0.75 0
8 0.125 0 0.125 0.75
9 0.5 0 0.25 0.25
10 0 0.125 0.875 0
11 0 0.5 0 0.5
12 0 0.375 0 0.625
13 0 0.375 0.25 0.375
14 0.875 0.125 0 0
15 0 0 0.875 0.125
16 0 0.625 0.25 0.125
17 0 0.875 0 0.125
18 0 0 0 1
19 0 0 1 0 [+] Show/hide bicluster #88 motif PSSM #2. bicluster 88 motif PSSM #2 Methanococcus maripaludis S2 24x4
POSITION A C G T
1 0 1 0 0
2 0.2 0 0.6 0.2
3 0 0.4 0.6 0
4 0.2 0 0.4 0.4
5 0 0 1 0
6 0 0.2 0 0.8
7 0 0.6 0 0.4
8 0.4 0.6 0 0
9 0.4 0 0.2 0.4
10 1 0 0 0
11 0.2 0.4 0.2 0.2
12 0 0 0 1
13 0.4 0.4 0 0.2
14 0 1 0 0
15 0 0.4 0.2 0.4
16 0.2 0.2 0 0.6
17 0 0.4 0.6 0
18 0.4 0.6 0 0
19 0 1 0 0
20 0 0.6 0 0.4
21 0.2 0.2 0.6 0
22 0 0.6 0.2 0.2
23 0.4 0.2 0.4 0
24 0 1 0 0 |