|
[+] Show/hide bicluster #87 rows and columns.
bicluster 87
Methanococcus maripaludis S2
23x38
[+] Show/hide bicluster #87 rows (genes).
bicluster 87 genes
Methanococcus maripaludis S2
23
[+] Show/hide bicluster #87 rows (short gene names).
bicluster 87 short names
Methanococcus maripaludis S2
23
short_name
[+] Show/hide bicluster #87 rows (long gene names).
bicluster 87 long names
Methanococcus maripaludis S2
23
long_name
[+] Show/hide bicluster #87 rows (NCBI RefSeq gene IDs).
bicluster 87 NCBI RefSeq IDs
Methanococcus maripaludis S2
44
[+] Show/hide bicluster #87 gene upstream sequences.
bicluster 87 upstream sequences
Methanococcus maripaludis S2
23
upstream
[+] Show/hide bicluster #87 columns (arrays; conditions).
bicluster 87 arrays
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #87 ratios.
bicluster 87 ratios
Methanococcus maripaludis S2
23x38
GENES ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_minus30m
Antisense_4 -3.66870250193066 0.342751315566204 0.349040330530721 0.411930480175896 0.562866839324316 0.361618360459756 0.0220115523758113 0.0786126870564687 -0.0220115523758113 0.154080866630679 0.449664569963001 -0.0471676122338813 0.311306240743616 0.789271378046946 1.26723651535028 1.07856606641475 0.644624033863044 0.455953584927519 -0.0786126870564687 -0.122635791808091 0.122635791808091 -0.965363797053436 -0.959074782088919 -0.933918722230849 -0.883606602514709 -0.827005467834051 -0.556577824359799 -0.940207737195366 -0.405641465211379 -0.00943352244677626 0.531421764501729 0.896184632443744 0.971652812017954 0.977941826982471 0.575444869253351 0.216971016275854 -0.135213821737126 -0.374196390388791
MMP0033 -5.71473766463057 0.0443109232095662 0.208894352273669 0.329166858128206 0.683654243804735 0.341827121902368 -0.177243692838265 -0.189903956612426 -0.253205275483235 -0.373477781337772 -0.379807913224853 -0.0126602637741618 -0.0253205275483235 0.493750287192309 0.981170442497537 1.09511281646499 0.816587013433434 0.455769495869824 0.443109232095662 0.71530490324014 -0.57604200172436 -0.955849914949213 -0.303846330579882 -1.01282110193294 -1.07612242080375 -0.898878727965485 -0.803926749659272 -0.367147649450691 -0.373477781337772 0.14559303340286 0.436779100208581 0.71530490324014 0.810256881546353 0.689984375691816 0.341827121902368 0.253205275483235 0.00633013188708089 -0.310176462466963
MMP0036 -3.66865466042309 -0.140882105014132 -0.0145740108635309 0.500374372981228 0.485800362117697 0.451794336769458 -0.0971600724235395 -0.0923020688023625 -0.174888130362371 -0.170030126741194 -0.0388640289694158 1.87033139415313 0.519806387465936 1.10276682200717 1.55456115877663 1.52541313704957 1.20964290167306 0.709268528691837 0.262332195543556 0.442078329527104 -0.32062823899768 -0.0582960434541237 -0.0534380398329467 -0.233184173816495 -0.340060253482388 -0.0291480217270618 -0.267190199164733 -0.616966459889475 -0.242900181058849 0.378924282451803 1.12705684011306 1.74888130362371 1.78288732897195 1.54970315515545 1.14163085097659 0.767564572145961 0.354634264345919 -0.213752159331787
MMP0092 -5.33736086458585 -0.456111976560763 0.246126689164746 0.26220849066991 0.626729324786968 0.358699299700896 -0.300654562010842 -0.279212160003956 -0.236327355990184 -0.161278948966084 -0.300654562010842 -0.375702969034942 0.117472277123431 1.05557736492468 1.36649219402453 1.29144378700043 0.937644153886812 0.321175096188846 -0.18272135097297 -0.247048556993627 -1.05649923275357 -0.300654562010842 -0.14519714746092 -0.37034236853322 -0.670535996629621 -0.783108607165772 -0.750945004155443 -0.0219033359213265 -0.354260567028056 0.208602485652696 0.594565721776639 1.10382276944018 1.09846216893846 0.889398749371319 0.396223503212946 0.321175096188846 -0.0379851374264909 -0.166639549467806
MMP0155 -5.23487161003655 -0.352751976181463 0.540291001493126 0.370612835734955 0.468847563279159 0.254517248637258 -0.200934669976783 -0.111630372209324 0.129491231762816 0.263447678414004 0.388473695288446 -0.477777993055905 0.567082290823364 0.781412605465266 1.15649065608859 1.08504721787463 0.826064754348995 -0.00446521488837295 -0.57601272060011 -0.129491231762816 -0.263447678414004 -0.0669782233255943 0.00446521488837295 -0.879647333009471 -1.23686452407931 -0.718899597028044 -0.0401869339953566 -0.352751976181463 0.0133956446651189 0.96895163077693 1.20114280497232 1.76375988090731 1.79055117023755 1.33509925162351 0.531360571716381 0.245586818860512 -0.200934669976783 0.147352091316307
MMP0246 -4.79638184085686 -0.260072103720437 0.171983165363515 0.608233145797797 0.532728341491863 0.281045660472085 -0.205540856166152 -0.188762010764833 -0.239098546968789 -0.176177876713844 -0.184567299414504 -0.545312475542852 -0.0125841340509889 1.42620185911207 1.74919463308746 1.27099753914988 0.826358136014937 0.415276423682633 -0.327187485325711 -0.302019217223733 -0.633401413899774 -0.34396633072703 -0.889278806269882 -0.830552847365267 -0.889278806269882 -1.05706726028307 -1.08223552838504 -0.373329310179337 -0.184567299414504 0.104867783758241 0.889278806269882 1.27099753914988 1.0193148581301 0.755048043059334 0.419471135032963 0.264266815070767 0.0335576908026371 -0.138425474560878
MMP0247 -4.79783180408061 -0.424434409652045 0.370168823029866 0.691886229432786 0.618240076159828 0.308151009747375 -0.265513763115663 -0.265513763115663 -0.199619836503017 -0.176363156522083 -0.110469229909436 -0.416682182991734 0.125973683230059 1.36245383554972 1.7655696218859 1.38183440220049 1.03298420248648 0.447691089632979 -0.149230363210993 -0.125973683230059 -0.707390682753409 0.176363156522083 -0.905072462591347 -0.676381776112163 -0.858559102629479 -1.19190484902287 -1.18802873569271 -0.292646556426753 -0.0368230766364788 0.215124289823639 0.850806875969168 1.25779877563551 1.08337367577851 0.792665176016833 0.490328336264691 0.246133196464885 0.0368230766364788 -0.114345343239592
MMP0248 -4.98219356636291 -0.441218450664863 0.292909727752304 0.59694260972305 0.500541939829886 0.292909727752304 -0.255832547024164 -0.200216775931955 -0.189093621713513 -0.0926929518203493 -0.144601004839745 -0.385602679572653 0.133477850621303 1.36814796886836 1.59431877131001 1.23467011824705 0.919514082057865 0.352233216917328 -0.255832547024164 -0.218755366296024 -0.667389253106515 -0.315156036189188 -0.819405694091888 -0.656266098888073 -0.86760602903847 -1.1679311929364 -1.20130065559173 -0.322571472334816 -0.140893286766931 0.170555031349443 0.875021465184098 1.26433186282957 1.03074562424228 0.737835896489981 0.444926168737677 0.241001674732908 0.0111231542184419 -0.0444926168737677
MMP0316 -4.38556750947512 0.596724913709557 -0.032548631656885 0.206141333826938 0.390583579882619 0.531627650395788 -0.0108495438856283 0.0325486316568849 -0.06509726331377 -0.032548631656885 0.238689965483823 0.108495438856283 0.0108495438856283 0.781167159765239 1.48638751233108 1.29109572238977 0.813715791422124 0.596724913709557 0.553326738167044 0.466530387082018 -0.0976458949706549 -0.162743158284425 -0.19529178994131 -0.477379930967646 -0.954759861935292 -0.282088141026336 -0.303787228797593 -0.705220352565841 -0.227840421598195 -0.271238597140708 0.314636772683221 0.650972633137699 0.726919440337097 0.596724913709557 0.433981755425133 -0.0433981755425133 -0.39058357988262 -0.292937684911965
MMP0384 -2.78639882999317 -0.475585254055448 -0.0816093039503431 0.807650697715465 0.869561204160553 0.509354621207314 -0.205430316840519 -0.436187659044937 -0.430559431186293 -0.441815886903582 -0.357392469023917 -0.605034494804268 -0.143519810395431 1.34233234428668 1.51117918004601 1.12845968565819 0.734483735553088 0.278597279002896 -0.554380444076469 -0.137891582536787 -0.132263354678142 -0.661316773390712 -1.02152335634395 -0.76262487484631 -0.847048292725975 -0.937099938464285 -1.01589512848531 -0.132263354678142 0.0703528482330544 0.734483735553088 1.61248728150161 1.79259057297823 1.46052512931821 1.14534436923413 0.790766014139532 0.576893355511046 0.379905380458494 -0.115378671102209
MMP0398 -2.69695577551554 -0.231360841419779 0.363567036516795 0.444924695038036 0.0584758170621417 -0.139833475583383 -0.236445695077357 -0.114409207295495 -0.129663768268228 -0.10423949998034 -0.00762728048636634 -0.216106280447046 0.35339732920164 0.826288719356353 0.81103415838362 0.556791475504743 0.668658255971449 0.307633646283442 -0.114409207295495 -0.0839000853500298 -0.0839000853500298 -0.56187632916232 -0.93815549982306 -0.907646377877595 -0.846628133986664 -0.409330719434994 -0.54153691453201 -0.419500426750149 -0.251700256050089 0.14491832924096 0.439839841380459 0.785609890095733 0.922900938850327 0.917816085192749 0.770355329123 0.617809719395673 0.409330719434993 -0.109324353637918
MMP0403 -4.27877403031714 -0.588192753968842 0.328695950747294 0.527643499883814 0.39789509827304 0.0172997868814365 -0.467094245798786 -0.320046057306576 -0.458444352358068 -0.337345844188012 -0.14704818849221 -0.691991475257461 0.769840516223925 1.17638550793768 1.79052794222868 1.29748401610774 0.588192753968842 0.302746270425139 -0.553593180205969 -0.640092114613151 -0.380595311391603 -0.406544991713758 0.787140303105362 0.536293393324532 -0.129748401610774 -0.363295524510167 -0.709291262138897 -0.683341581816743 -0.138398295051492 0.233547122899393 0.830389770308953 1.38398295051492 1.61753007341431 1.38398295051492 0.890939024393981 0.371945417950885 0.069199147525746 -0.14704818849221
MMP0404 -3.93063152728248 -0.701595523675902 0.06836058948637 0.384978056581136 0.320215392857207 0.075556441011251 -0.34180294743185 -0.334607095906969 -0.334607095906969 -0.320215392857207 -0.176298362359586 -0.629637008427091 0.41376146268066 0.867100108748166 0.888687663322809 0.62244115690221 0.190690065409348 -0.0323813318619647 -0.420957314205541 -0.600853602327567 -0.27704028370792 -0.780749890449594 -0.212277619983991 -0.0323813318619647 -0.514503384028995 -0.89588351484769 -0.9678420300965 -0.384978056581136 -0.154710807784942 0.241061026083515 0.888687663322809 1.29885120024103 1.42837652768889 1.29885120024103 1.02540884229555 0.68720382062614 0.363390502006493 -0.075556441011251
MMP0412 -3.70116824781461 0.592938071387313 0.324263007789937 0.398380266713351 0.352056979886217 0.120440545750548 -0.185293147308535 -0.268675063597376 -0.324263007789937 -0.250145748866523 0 -0.166763832577682 -0.00926465736542677 0.889407107080969 1.92704873200877 1.53793312266084 0.91720107917725 0.565144099291033 -0.176028489943109 -0.176028489943109 -0.129705203115975 0.00926465736542677 -0.546614784560179 -0.481762183002192 -0.389115609347924 0.185293147308535 -0.213087119404816 -0.768966561330422 -0.333527665155363 0 0.620732043483593 1.24146408696719 1.38043394744859 1.30631668852517 1.02837696756237 0.352056979886217 0.111175888385121 -0.528085469829326
MMP0603 -4.53659967795899 -0.925622743675339 0.827697919407419 0.459314056685244 0.771740876968608 0.375378493027027 -0.14688723640188 -0.0816040202232665 0.00233154343495048 0.179528844491187 0.29610601623871 -0.496618751644451 0.0862671070931677 0.34273688493772 1.24737573769851 1.2333864770888 0.920959656805438 0.240148973799899 -0.10025636770287 -0.0582885858737617 -0.916296569935537 -0.855676440626825 -0.962927438634547 -1.7043582509488 -1.7043582509488 -1.2147341296092 -1.12147239221118 -0.314758363718314 0.0442993252640591 0.63651135774148 0.920959656805438 1.2380495639587 1.28001734578781 0.851013353756924 0.347399971807621 0.14688723640188 -0.212170452580493 0.137561062662078
MMP0604 -4.3099240111701 -0.443675766633954 0.794365594153007 0.43304880216368 0.746544254036773 0.411794873223131 -0.18862861934737 -0.0929859391149006 -0.0504780812338032 0.0876724568797633 0.156747725936547 -0.401167908752857 0.0239106700581173 1.00159140132336 1.49043176695598 1.38416212225323 0.874067827680065 0.257703888404153 -0.0239106700581173 -0.0611050457040775 -0.597766751452932 -0.985650954617945 -0.502124071220463 -1.32040033543159 -1.46386435578029 -1.32571381766672 -1.01221836579363 -0.363973533106896 -0.0504780812338032 0.804992558623281 1.06003970590987 1.44792390907488 1.57013400048303 1.16630935061261 0.757171218507047 0.496810588985325 0.0664185279392146 -0.0770454924094891
MMP0671 -2.87770160353439 0.182785038904398 0.437094658249647 0.0635774048363123 0.0556302292317733 -0.150996336486242 -0.238415268136171 -0.349675726599718 -0.421200307040569 -0.301992672972484 -0.119207634068086 0.0317887024181562 -0.103313282859008 1.37486137958525 2.16163176443462 1.62122382332596 1.25565374551717 0.540407941108655 0.294045497367944 0.286098321763405 0.0556302292317733 0.468883360667803 -0.41325313143603 -0.349675726599718 -0.270203970554327 -0.150996336486242 0.0476830536272343 -0.33378137539064 -0.0556302292317733 0.214573741322554 0.635774048363123 1.29538962353986 1.68480122816228 2.02652977915746 1.55764641848965 0.683457101990357 0.397358780226952 -0.0317887024181562
MMP0707 -4.36085634542257 -0.217025389316839 0.401727848309894 0.346317110611977 0.651076167950517 0.383257602410588 0.133909282769965 0.133909282769965 0.115439036870659 0.0507931762230899 -0.0230878073741318 -0.0969687909713537 0.595665430252601 0.928129856440099 0.96507034823871 0.771132766296003 0.429433217158852 0.0230878073741317 -0.0138526844244791 -0.161614651618923 -0.521784446655379 -0.318611741763019 -0.789603012195308 -1.74082067600954 -1.5930587088151 -0.992775717087669 -0.531019569605032 -0.106203913921006 -0.383257602410588 0.00461756147482624 0.567960061403643 0.983540594138016 1.14053768428211 1.03895133183593 0.835778626943572 0.521784446655379 0.180084897518228 -0.337081987662325
MMP0878 -4.59986923582975 -0.302263101837131 0.144156248568478 -0.0325514109670757 0.581275195840637 0.469670358239235 -0.218559473636079 -0.218559473636079 -0.0883538297677768 0.0325514109670757 0.144156248568478 -0.283662295570231 0.0604526203674262 0.841686483577242 1.3904102684508 1.2044022057818 0.785884064776541 0.478970761372685 0.172057457968829 -0.0790534266343266 -0.478970761372685 -0.134855845435028 -0.274361892436781 -0.990492933712445 -0.981192530578995 -0.637077614641338 -0.646378017774788 -0.702180436575489 -0.274361892436781 0.0790534266343266 0.423168342571984 0.906789305511394 1.15790019011455 1.1299989807142 0.646378017774788 0.339464714370932 0.106954636034677 -0.153456651701928
MMP1425 -4.24982861015472 -0.229475236142306 0.253630524157285 0.124802321410728 0.56764926835202 0.277785812172265 -0.253630524157285 0.0120776440074898 -0.0120776440074898 -0.052336457365789 0.0281811693508095 -0.157009372097367 -0.189216422784006 0.157009372097367 0.833357436516795 0.752839809800196 0.640115132396958 0.132854084082388 -0.414665777590482 -0.342199913545544 -0.0442846946941292 -0.253630524157285 -0.53544221766538 -1.03465150330829 -1.15542794338319 -0.0764917453807686 -0.5515457430087 -0.165061134769027 -0.374406964232183 0.454924590948782 0.583752793695339 1.01049621529331 1.36477377284634 1.22789380742813 0.728684521785217 0.648166895068618 0.422717540262142 -0.148957609425707
MMP1480 -4.56123868526564 -0.926508204417411 0.313480219539726 0.334378900842374 -0.139324542017656 -0.271682856934429 -0.543365713868858 -0.452804761557382 -0.459770988658264 -0.404041171851202 -0.0348311355044139 -0.731453845592693 -0.0208986813026484 0.89864329601388 1.2539208781589 0.982238021224474 0.905609523114763 0.341345127943257 -0.0766284981097107 -0.0487635897061795 -0.278649084035312 -0.285615311136194 0.606061757776803 -0.34831135504414 -0.675724028785631 -0.842913479206818 -0.815048570803287 -0.243817948530898 0.355277582145022 0.640892893281217 0.828981025005052 1.06583274643507 1.36538051177303 1.1354950174439 0.912575750215646 0.926508204417411 0.543365713868858 0.376176263447671
MMP1582 -4.5910601760015 -0.766275993177864 0.565727140425528 0.468263496503329 0.703800635981978 0.269275223495505 -0.335811565854816 -0.258652847749742 -0.185555114808092 -0.0149937379442433 0.094652861468231 -0.62414151245799 0.159628624083031 0.675373739838003 0.870301027682401 0.488568422320454 0.236787342188105 -0.218042996115492 -0.65662939376539 -0.620080527294565 -0.384543387815916 -0.888105548080613 -0.449519150430716 -0.689117275072789 -0.733788111870464 -0.969325251349113 -1.03836199912734 0.18399453506358 0.0540430098339812 0.472324481666754 0.752532457943077 1.18299688526612 1.2763995440249 1.08959422650735 0.760654428269927 0.626641917876903 0.366738867417704 0.0743479356511061
MMP1710 -4.42712330034486 -0.601799131421701 0.269996367070276 0.322043859517559 0.868542530214022 0.57577538519806 -0.322043859517559 -0.10734795317252 0.0618063972811475 0.172407318731622 0.243972620846635 -0.439150717523944 -0.263490430514366 0.972637515108586 1.72082021903827 1.90949237915967 1.31745215257183 0.536739765862598 -0.276502303626187 -0.0748182703929683 -1.22636904078909 -0.445656654079854 -0.0487945241693271 -0.139877635952071 -0.979143451664497 -0.393609161632572 -0.692882243204445 0.0227707779456858 -0.426138844412123 0.58228132175397 1.20034529456545 1.65576085347917 1.64925491692326 1.38251151813093 0.374091351964841 0.263490430514366 -0.191925128399353 -0.3480676057412
[+] Show/hide bicluster #87 motif PSSM #1. bicluster 87 motif PSSM #1 Methanococcus maripaludis S2 13x4
POSITION A C G T
1 0 0.75 0 0.25
2 0 1 0 0
3 0.5 0.5 0 0
4 0.5 0.5 0 0
5 0 0.75 0.25 0
6 0.5 0.25 0.25 0
7 1 0 0 0
8 0 0 0 1
9 0 0.75 0.25 0
10 0 0.5 0 0.5
11 0 0 1 0
12 0 0 0.75 0.25
13 0 1 0 0 [+] Show/hide bicluster #87 motif PSSM #2. bicluster 87 motif PSSM #2 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0 1 0 0
2 0.666667 0 0 0.333333
3 0 0.666667 0.333333 0
4 0 0.666667 0 0.333333
5 0 0 0 1
6 0 0 1 0
7 0 0.666667 0.333333 0
8 0 0 0 1
9 0 0 1 0
10 1 0 0 0
11 0 0 1 0 |