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bicluster 86
Methanococcus maripaludis S2
19x38
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bicluster 86 genes
Methanococcus maripaludis S2
19
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bicluster 86 short names
Methanococcus maripaludis S2
19
short_name
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bicluster 86 long names
Methanococcus maripaludis S2
19
long_name
[+] Show/hide bicluster #86 rows (NCBI RefSeq gene IDs).
bicluster 86 NCBI RefSeq IDs
Methanococcus maripaludis S2
34
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bicluster 86 upstream sequences
Methanococcus maripaludis S2
19
upstream
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bicluster 86 arrays
Methanococcus maripaludis S2
38
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bicluster 86 ratios
Methanococcus maripaludis S2
19x38
GENES ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
MMP0100 0.653066275441265 0.396745594732708 -3.85540458279077 -0.85064895686043 0.302914018784446 0.477193317263168 0.419100217770261 0.402502189343716 0.402502189343716 0.419100217770261 0.311213032997718 -0.0124485213199087 0.253119933504811 -0.0622426065995437 -0.369306132490626 -0.385904160917171 -0.170129791372086 0.0207475355331812 0.294615004571173 -0.734462757874615 -0.75106078630116 -1.14941346853824 -1.22410459645769 -1.22410459645769 -1.25730065331078 -1.34858980965678 -1.1909085396046 -0.858947971073703 -0.78425684315425 0.120335706092451 0.535286416756076 0.452296274623351 0.361007118277353 0.00414950710663625 -0.128634720305724 -0.203325848225176 -0.244820919291538 0.0124485213199087
MMP0160 0.464955955544939 0.501355341199668 -5.20632856481445 -0.0108444952546277 0.303645867129574 0.357868343402713 0.0108444952546277 -0.195200914583298 0.32533485763883 0.715736686805425 -0.108444952546277 0.216889905092553 0.726581182060053 0.444624305439734 -0.0976004572916489 -0.585602743749893 -0.390401829166596 -0.542224762731383 -0.336179352893457 -0.628980724768404 -0.55306925798601 0.281956876620319 -0.36871283865734 -1.16036099224516 -1.4097843831016 -1.74596373599505 -1.49654034513862 -1.81103070752282 -0.650669715277659 -0.238578895601808 0.032533485763883 0.585602743749893 0.867559620370213 0.748270172569308 0.585602743749893 0.466313295948989 0.195200914583298 0.618136229513776
MMP0285 0.694879039452562 1.3254742413105 -3.35932835972442 -0.281139104946334 0.806746996802524 0.837305595166256 0.727294641056821 0.427820377092247 0.354479741019291 0.256692226255348 0.0794523557457031 0.378926619710276 0.348368021346544 -0.171128150836899 -0.262803945928095 -0.488937573819711 -0.22002190821887 -0.128346113127674 -0.0427820377092247 -0.0366703180364783 -0.916757950911959 -1.8701862198604 -1.8579627805149 -1.44847756244089 -1.3568017673497 -1.21012049520379 -0.971763427966676 -0.464490695128726 -0.0122234393454928 0.134457832800421 0.446155536110487 0.531719611528936 0.44004381643774 0.183351590182392 -0.0550054770547175 -0.0488937573819711 0.0366703180364784 0.0122234393454928
MMP0287 0.889466440560376 1.63811526181422 -3.73741803127586 0.485260008876321 0.294622148246338 1.16115787838263 0.953189303149916 0.311952862849064 -0.12131500221908 -0.164641788725895 -0.311952862849063 -0.12131500221908 0.129980359520443 0.18197250332862 0.0259960719040887 0.0693228584109031 0.216633932534072 0.190637860629983 -0.0259960719040887 -0.103984287616354 -0.953189303149916 -1.83705574788893 -1.67241395916304 -1.20448466488944 -0.935858588547191 -0.346614292054515 -0.346614292054515 -0.069322858410903 -0.0866535730136287 0.164641788725895 0.615240368396764 0.771216799821296 0.337948934753152 -0.069322858410903 -0.147311074123169 -0.24263000443816 -0.173307146027257 -0.277291433643612
MMP0340 0.800728172822459 0.718389234188741 -4.50313141046058 -0.409224386992865 0.247078875165503 0.347454668201489 0.0965151856115248 -0.111957615309369 -0.0579091113669148 0.023163644546766 0.220054623194276 0.166006119251823 0.416945601841787 -0.162145511827362 -0.0849333633381417 -0.293406164259035 -0.200751586071971 -0.200751586071971 -0.0231636445467659 -0.366757705323794 -0.675606299280673 -0.710351766100822 -1.088691293698 -1.34349138371242 -1.47861264356856 -1.27786105749659 -1.1079943308203 -1.37437624310811 -0.335872845928106 0.281824341985652 0.42852742411517 0.675606299280673 0.806866951712347 0.671745691856212 0.46713349835978 0.416945601841787 0.393781957295021 0.38992134987056
MMP0341 0.809638909599578 0.529971928728112 -5.97193946856792 -0.669067631646825 0.326872736071732 0.449450012098631 0.0561812515123288 -0.204295460044832 0.0102147730022416 0.158328981534745 0.178758527539228 0.0306443190067248 0.270691484559403 -0.331980122572852 -0.240047165552678 -0.520953423114322 -0.204295460044832 -0.107255116523537 -0.0102147730022416 -0.63331592613898 -0.939759116206228 -0.50563126361096 -0.69460456415243 -1.22577276026899 -1.50157163132952 -1.53732333683736 -0.173651141038107 -0.0715034110156913 -0.648638085642342 -0.0868255705190537 0.321765349570611 0.63331592613898 0.842718772684933 0.628208539637859 0.50563126361096 0.398376147087423 0.260476711557161 0.250261938554919
MMP0590 0.114787235077735 0.270695752472685 -4.40719606020644 0.234107955123264 0.579385872927582 1.02331462439028 0.995128671916454 0.537106944216849 0.220014978886353 0.10022468087261 -0.703074964631313 -0.759446869578957 0.10022468087261 -0.632610083446758 -0.146402403273331 -0.484633832959194 -0.0336585933780438 0.0438527759249662 -1.14700371609401 0.276386883833997 -0.928562584421888 -1.32316591905539 -1.11177127550173 -0.991980977487987 -1.11881776362019 -1.14700371609401 -0.999027465606443 -0.604424130972936 0.290479860070907 -0.0547980577334102 0.121364145227976 0.149550097701798 0.0368062878065107 -0.0547980577334102 -0.371890023063906 -0.343704070590084 0.0156668234511443 0.269340395715541
MMP0713 0.326820488006008 0.556479201519424 -4.41024998819978 -0.330063413155537 0.266366965002714 0.573268033375407 0.376388102721227 0 0.0463246895656895 0.335853999351249 0.0694870343485342 -0.150555241088491 0.474828068048317 -0.063696448152823 -0.359016344134093 -0.451665723265472 -0.486409240439739 -0.422712792286916 0.214251689241314 -0.306901068372693 -0.914912618922367 -1.53450534186346 -1.73138527251764 -1.54608651425489 -1.30288189403502 -0.995980825662323 -0.8801691017481 -0.78172913642101 -0.29531989598127 0.14476465489278 0.665917412506786 0.932284377509501 0.874378515552389 0.451665723265472 0.138974068697068 -0.0405341033699783 -0.0289529309785559 0.469037481852606
MMP0714 0.351154646698276 0.608400763080519 -4.47829384502671 -0.599686385099772 0.482100819393935 0.505617932535102 0.370394531973389 0.0235171131411675 0.223412574841092 0.393911645114556 0.146981957132297 -0.111706287420546 0.0823098959940864 -0.111706287420546 -0.393911645114556 -0.517376489105686 -0.258688244552843 -0.458583706252767 -0.0764306177087945 -0.152861235417589 -0.81134040337028 -1.68735286787877 -1.75790420730227 -1.3757511187583 -1.12294215249075 -0.235171131411675 -0.382153088543973 -0.146981957132297 -0.182257626844048 0.0411549479970432 0.576169271958605 0.940684525646702 0.787823290229113 0.270446801123427 0.105827009135254 -0.135223400561713 -0.0823098959940864 0.493859375964518
MMP0715 0.448192247307975 0.516525867918886 -4.94939073086787 -0.645358920612643 0.0224751862899926 0.587565584438376 0.369235203335592 0.0481611134785555 0.285755939972762 0.43987150310414 -0.189433713015651 -0.748102629366894 0.478400393886984 -0.138061858638526 -0.53619373006125 -0.677466329598346 -0.581144102641236 -0.587565584438376 -0.459135948495562 -0.292177421769903 -0.671044847801206 -1.1911848733696 -1.54436637221234 -1.46088710884951 -1.300350063921 -1.5379448904152 -1.14623450078962 -1.24897820954387 -0.285755939972762 -0.00963222269571105 0.555458175452673 0.97927597406396 0.97285449226682 0.523350766466969 0.317863348958466 0.215119640204214 0.208698158407074 0.818738929135442
MMP0814 0.0433848395987477 0.808365988411397 -5.60395903844385 0.0945371344515673 0.186485117151777 -0.280917128240956 -0.204293809324114 0.224796776610198 1.09830261226219 1.22089992252914 -0.740657041742005 -0.618059731475058 0.171160453368409 -0.311566455807693 -0.710007714175268 -1.20805928713474 -0.847929688225583 -0.572085740124954 -0.909228343359056 -0.0970211628405363 -0.319228787699377 -0.47247542553306 -1.44559157577695 -1.42260458010189 -0.870916683900635 -1.28468260605158 -1.18507229145969 -1.07779964497611 -0.142995154190641 0.584926375519353 0.584926375519353 0.684536690111246 0.447004401469038 0.11752413012662 0.079212470668199 0.240121440393566 0.408692742010617 0.74583534524472
MMP0815 -0.153178596061678 0.167820419911844 -5.0127297573831 0.403830234006837 0.265793255733485 -0.169023225827576 0.0794433350644587 0.355517291611164 1.08021142754626 1.22515025473328 -0.665956347611645 -0.91442290850368 -0.313962053014596 -0.382980542151272 -0.79709147697133 -0.893717361762677 -0.734974836748321 -0.53482121825196 -0.879913663935341 0.231284011165146 -0.0654954921225615 -0.67976004543898 -1.11457652700004 -0.79709147697133 -0.396784239978608 -0.431293484546946 -0.431293484546946 -0.686661894352648 0.176069219855805 0.548769061193857 0.534965363366522 0.679904190553542 0.459045025316178 0.210578464424144 0.286498802474488 0.376222838352167 0.334811744870161 0.659198643812539
MMP0910 0.783090133016041 0.489508227722319 -4.11305000179929 -0.192274299981107 0.0783339740663769 -0.0498488925876944 0.0498488925876944 0.0783339740663769 0.192274299981107 -0.0213638111090119 -0.291972085156495 0.135304137023742 0.284850814786825 -0.213638111090119 0.00712127036967063 -0.291972085156495 0.0142425407393413 -0.00712127036967063 -0.619550522161344 -0.121061596284401 -1.17500961099565 -1.60228583317589 -1.43849661467347 -0.904401336948169 -0.954250229535863 -0.669399414749039 -0.484246385137602 -0.370306059222872 -0.128182866654071 0.0498488925876944 0.00712127036967063 0.0498488925876944 0.0925765148057181 0.213638111090119 0.11394032591473 0.370306059222872 0.662278144379368 0.505610196246614
MMP0919 1.07110946490564 0.788560368498197 -3.87034204340694 -0.279022876621851 0.614689495114303 0.715389480662039 0.660843655157016 0.388114527631898 0.0146854145590448 -0.216085385654516 0.0944062364510022 -0.258043712966073 0.157343727418337 -0.207693720192205 -0.350352033051497 -0.362939531244964 -0.329372869395719 -0.341960367589186 0.0524479091394457 -0.421681189481143 -1.17693108108916 -1.18112691382032 -1.06783943007911 -1.13916858650876 -1.44546437588312 -1.09301442646605 -0.983922775456001 -0.958747779069067 -0.362939531244964 0.17412705834296 0.765739473435907 0.91678945175751 0.698606149737416 0.300002040277629 0.232868716579139 0.320981203933408 0.199302054729894 0.446856185868077
MMP1128 1.2374256685394 0.802483968094437 -4.54882361839353 -0.0370578674013201 0.267640153453978 0.0864683572697468 -0.135878847138174 -0.292345398388192 0.209994581940814 -0.0288227857565823 -0.119408683848698 -0.572338174309277 0.160584092072387 -0.152349010427649 0.144113928782911 -0.382931296480308 0.0205877041118445 -0.440576867993472 -0.349990969901356 0.0041175408223689 -1.2970253590462 -1.73348468621731 -1.6676040330594 -1.34643584891463 -0.901741440098789 -0.737039807204033 -0.473517194572423 -0.572338174309277 0.0947034389144846 -0.135878847138174 0.317050643322405 0.629983745822442 0.514692602796112 0.489987357861899 0.407636541414521 0.564103092664539 0.728804725559295 0.992327338190904
MMP1196 0.619747120142246 0.544804963952652 -6.07295699694314 0.641917753664831 0.42980580027993 0.474460948360962 0.396314439219157 0.00558189351012897 0.452133374320446 0.507952309421736 -0.262348994976061 0.675409114725605 1.38989148402211 0.362823078158383 -0.117219763712708 -0.496788522401478 -0.463297161340704 -0.574935031543284 -0.530279883462252 0.0167456805303869 -0.407478226239415 -0.653081540685089 -0.92101242917128 -1.09963302149541 -1.11079680851566 -1.0214865123536 -1.1554519565967 -1.26708982679928 0.16187491179374 -0.664245327705347 -0.251185207955804 0.0502370415911607 0.128383550732966 0.139547337753224 0.0390732545709028 -0.240021420935546 -0.21769384689503 0.273512781996319
MMP1222 1.00157052114669 0.621491492921459 -5.56199512934521 -0.582655129380096 0.271554200570814 0.23991681798004 0.640656997463182 -0.108094390518479 0.0764570079277049 0.145004670207716 0.19773364119234 0.00263644854923121 0.435014010623149 -0.355920554146213 -0.387557936736987 -0.682840174250882 -0.556290643887784 -0.519380364198547 -0.129185978912329 -0.00263644854923121 -0.456105599016998 -1.07830745663556 -1.43159156223254 -1.48432053321717 -1.35777100285407 -1.24704016378636 -1.16267381021096 -1.0730345595371 0.0342738311400056 -0.192460744093878 0.0975485963215545 0.21882522958619 0.3717392454416 0.23991681798004 0.166096258601566 0.261008406373889 0.361193451244675 0.424468216426224
Unanno_2 0.416791495151031 -0.6444363599564 -4.47198465834214 -0.478924595174266 -0.401129737074893 0.882485421564764 0.615065596848169 0.187193877301617 0.0705015901525569 0.435164987493368 -0.0170176252092379 -0.615065596848169 0.0705015901525569 0.153158626883141 0.74148224125965 0.0170176252092379 0.167745162776773 0.221229127720092 -0.235815663613725 0.143434269620719 -0.459475880649422 -1.84519679054451 -2.05427047168657 -1.94730254179993 -1.82574807601966 -1.13045653175652 -1.13045653175652 -0.804690563465391 0.177469520039195 0.172607341407984 0.235815663613725 0.848450171146288 1.04293731639472 0.0316041611028704 -0.167745162776773 0.0559150542589245 0.371956665287628 0.605341239585747
Unanno_4 0.418266962677872 -0.23412019684226 -4.42032091899037 -0.343398698146736 0.363248333877761 0.994466750124362 0.71657184989001 0.224300883760585 0.105203069374434 0.371188188170171 -0.109172996520639 -0.657022942696934 0.156812122275099 0.0496240893275629 0.323549062415711 -0.0297744535965378 -0.0615338707661781 -0.00595489071930756 -0.470436366825297 0.160782049421304 -0.518075492579758 -1.88373043087429 -2.10604635106177 -2.05840722530731 -1.93136955662875 -1.22869245175046 -1.34382033899041 -1.1850232531422 0.180631685152329 0.192541466590944 0.311639280977096 0.815820028545136 0.974617114393337 0.113142923666844 -0.0774135793509983 0.109172996520639 0.406917532486016 0.672902651281754
[+] Show/hide bicluster #86 motif PSSM #1. bicluster 86 motif PSSM #1 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 1 0 0 0
2 0.555556 0 0.444444 0
3 0 1 0 0
4 0.111111 0 0.888889 0
5 0.555556 0 0.333333 0.111111
6 0.333333 0 0.444444 0.222222
7 0 0 1 0
8 0.111111 0 0.888889 0
9 0.333333 0.111111 0.555556 0
10 0.222222 0 0.555556 0.222222
11 0.555556 0.111111 0.333333 0 [+] Show/hide bicluster #86 motif PSSM #2. bicluster 86 motif PSSM #2 Methanococcus maripaludis S2 10x4
POSITION A C G T
1 0 0 1 0
2 0 0 1 0
3 0 1 0 0
4 0 0.5 0.5 0
5 0 0 0 1
6 0 0 0 1
7 0 0 1 0
8 0 0 1 0
9 0 1 0 0
10 0 0.5 0.5 0 |