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bicluster 83
Methanococcus maripaludis S2
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bicluster 83 genes
Methanococcus maripaludis S2
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bicluster 83 short names
Methanococcus maripaludis S2
24
short_name
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bicluster 83 long names
Methanococcus maripaludis S2
24
long_name
[+] Show/hide bicluster #83 rows (NCBI RefSeq gene IDs).
bicluster 83 NCBI RefSeq IDs
Methanococcus maripaludis S2
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bicluster 83 upstream sequences
Methanococcus maripaludis S2
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upstream
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bicluster 83 arrays
Methanococcus maripaludis S2
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bicluster 83 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_HighH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0120m
MMP0129 0.331660254228918 -0.734681192078239 -0.774212315607222 -0.122960744524964 -0.896853223117831 2.77414405019513 2.49000570860203 0.0627465345838494 -0.107565487858027 -1.03979971596093 -0.322696463574082 -0.28684130095474 0.0179275813096713 0.0448189532741781 0.439225742086946 0.582646392564315 0.28684130095474 1.27285827298666 1.4342065047737 -0.851560112209384 -0.501972276670795 -0.170312022441877 -0.0806741158935206 0.322696463574082 0.197203394406384 1.60451852721558 0.690211880422343 1.308713435606 2.35747694222177 3.28074737966984 0.591610183219151 -0.349587835538589 -0.833632530899713 -1.02187213465126 -0.86052390286422 -0.403370579467603 -0.770885996315864 -0.618501555183658 -0.340624044883754
MMP0177 -0.431772409880778 -1.46492752150766 0.13542804525188 -0.232207868821655 -0.883735372123348 2.6299886561843 3.37299325491865 -0.153033259198251 -0.579340195536234 -0.224084415254581 -0.595736616164617 -0.125705891484277 0.284204624225322 0.311531991939295 0.377117674452831 0.415375989252394 0.16396420628384 0.0874475766847146 0.23501536234017 -0.289670097768117 -0.191291573997813 0.256877256511349 0.142102312112661 0.147567785655456 0.803424610790814 1.74895153369429 1.48660880364015 1.5303325919825 1.70522774535193 1.90745026643533 -0.120240417941483 0.0109309470855893 -0.109309470855893 -0.31699746548209 -0.726907981191689 -1.08216376147334 -1.10402565564452 -1.10402565564452 -0.923665028732297
MMP0283 -0.250923295901837 -1.54963540877338 0.0344425061498108 -0.0245656960034821 -1.35038968363091 1.78533821689335 2.75721929503279 -0.554667569028215 -0.356880600480806 -0.187348913154456 0.130523000582451 0.222352664550891 0.617926601645708 0.370692890961447 0.476650195540416 0.413075812793035 0.0740124381403343 0.250607945771949 -0.201476553764985 -0.766582178186152 -0.724199256354565 -0.575859029944008 -0.406327342617658 -0.236795655291308 0.278863226993008 0.999372898129996 0.702692445308883 1.64218054590907 2.24966909216183 2.19315852971971 0.730947726529942 0.0528209772245405 -0.434582623838716 -0.794837459407211 -1.23279431833362 -1.28930488077573 -1.28224106047047 -1.26104959955467 -0.971432967038826
MMP0421 0.0160414211697404 -0.513513846493347 -0.219752786777932 0.209701734904169 -0.650655998511592 3.3853795238315 3.16292594991402 0.283398440665413 -0.6363097063997 -0.262009879105759 -0.112289948188182 -0.0160414211697404 0.0267357019495673 0.29409272144524 0.315481283004893 0.229927036766278 0.422424090803162 0.999915252913815 0.796723918097104 0.0267357019495673 -0.122984228968009 0.122984228968009 -0.101595667408356 -0.197844194426798 0.561449740940912 1.01060953369364 2.77516586236508 0.657698267959354 1.17102374539105 1.41699220332706 -0.0160414211697404 -0.32617556378472 -0.796723918097104 -0.94644384901468 -0.967832410574334 -1.02130381447347 -1.21380086851035 -1.21380086851035 -0.999915252913815
MMP0422 0.414795242938491 0.143775751746196 0.824495810137311 0.289989589647435 -0.422148318210062 4.05932588620754 2.37565141592395 -0.374653767815411 -0.802829502461596 -0.53521966830773 -0.0669024585384663 -0.133804917076933 -0.307751309276945 -0.147185408784626 -0.0401414751230798 0.0133804917076933 0.0936634419538529 0.816209994169289 -0.414795242938491 -0.0669024585384663 -0.0267609834153865 0.280990325861558 -0.388034259523104 -0.454936718061571 0.227468359030785 1.13734179515393 3.53244981083102 0.0936634419538529 0.628883110261583 0.267609834153865 0.240848850738479 -0.374653767815411 -0.695785568800049 -0.722546552215436 -0.602122126846197 -0.454936718061571 -0.57536114343081 -0.669024585384663 -0.561980651723117
MMP0585 0.185608816422136 -1.29655173043709 0.57684342009869 0.332440514336893 -0.51819335122581 2.79755745775886 2.10661457426907 -0.377205014019179 -1.06575384913355 -0.478990493992609 -0.473003112817701 -0.341280726969734 -0.113760242323245 0.0299369058745381 0.107772861148337 0.131722385847967 -0.197583578771951 0.209558341121766 -0.514914781042054 -0.652624548064929 -0.646637166890022 -0.143697148197782 -0.0718485740988914 -0.251470009346119 0.101785479973429 1.67047934779922 1.74232792189811 1.09569075500809 1.76627744659774 2.09558341121766 0.431091444593348 0.0898107176236142 -0.832245983312158 -1.04180432443392 -1.13161504205754 -1.37111028905384 -1.32321123965458 -1.19747623498152 -0.910081938585956
MMP0660 0.0772552328094756 -0.337071010760196 0.144510037211014 0.0208946879740594 -0.670528306979655 3.95368726992684 3.75923013205816 0.0891406532417026 0.136682334970611 -0.291192800589562 -0.196109437131746 -0.445703266208513 -0.00594271021611351 0.124796914538384 0.0653698123772486 0.124796914538384 0.112911494106157 0.148567755402838 0.730953356581961 -0.766609617878643 -0.766609617878643 -0.826036720039778 -0.469474107072967 -0.528901209234102 0.00594271021611351 1.18259933300659 1.15882849214213 1.46784942338004 1.81252661591462 1.88383913850798 0.243651118860654 0.0653698123772486 -0.267421959725108 -0.564557470530783 -0.683411674853054 -0.69529709528528 -0.528901209234102 -0.445703266208513 -0.207994857563973
MMP0692 -1.14048251887313 -0.154091733607468 0.22801495492154 0.470959322255615 -0.113994118144547 1.59369253780544 2.19306015369881 0.0522358405590747 -0.435298671325623 -0.400474777619573 -0.313415043354448 -0.217649335662811 0.165413495103737 0.269885176221886 0.557182299296797 0.478828538458185 -0.165413495103737 0.322121016780961 -0.165413495103737 -0.0522358405590748 -0.278591149648398 0.191531415383274 -0.121883627971174 0.130589601397687 0.800949555239145 1.02730486432847 1.33201393425641 1.37554380138897 1.72378273844947 2.39414269229092 -0.365650883913523 -0.705183847547508 -1.20142433285872 -1.35813185453594 -1.59319313705178 -1.91531415383274 -1.74119468530249 -1.53225132306619 -1.00118694404893
MMP0848 -0.471514114500587 -1.89494954819099 0.840941867209517 -0.213405392343297 -0.65844609148177 2.07877600551234 3.76549505823631 -0.952851439719937 0.206287425094007 0.196464214375245 -0.17681779293772 0.166994582218958 0.432221271625538 0.451867693063063 0.216110635812769 0.402751639469251 0.00982321071876221 0.569746221688209 0.599215853844496 -0.569746221688209 -0.324165953719154 0.363458796594203 -0.00982321071876224 -0.186641003656482 0.392928428750489 0.392928428750489 0.579569432406972 1.25737097200157 1.49312802925186 2.02358140806502 -0.0491160535938112 -0.402751639469252 -0.766210436063454 -1.38507271134547 -1.22790133984528 -1.11002281122013 -1.0412603361888 -0.825149700376027 -0.962674650438699
MMP0940 -0.369745879418517 0.966332111276536 -0.0123718347052056 0.223179765048362 -0.361557659147742 4.31737712606836 3.16886896713208 -0.971657776146336 -0.249363500072953 -0.404140844945821 -0.197771051781997 0.146178603491042 -0.197771051781997 0.0773886724364339 0.0601911896727819 0.266560982836605 0.0601911896727819 0.00859874138182599 0.21496853454565 -0.404140844945821 -0.6621030864006 -0.0945861552000856 -0.472930776000429 -1.41879232800129 -0.180573569018345 1.16083008654651 0.92006532785538 1.24681750036477 1.9863092592018 2.07229667302006 0.300955948363909 0.266560982836605 -0.541720707055037 -0.696498051927904 -0.696498051927904 -0.799682948509816 -0.74809050021886 -1.02325022443729 -0.249363500072953
MMP0976 -0.424537577125032 -0.0792010935820804 -0.727322325747503 0.11021460977295 -1.05001361103725 0.993165633855313 3.39303974387036 0.37905140814735 0.712616647317018 -0.166782619584834 0.773264872620595 0.439699633450926 0.560996084058078 0.576158140383972 0.727778703642913 0.576158140383972 0.758102816294701 0.257754957540198 0.591320196709866 -0.22743084488841 0 -0.545834027732184 -0.45486168977682 -0.924885435879535 -0.0758102816294701 0.409375520799138 0.697454590991124 0.742940759968806 1.74363647747781 1.36458506933046 0.106134394281258 -0.272917013866092 -0.849075154250065 -1.04618188648669 -1.21296450607152 -1.22812656239741 -1.33426095667867 -1.50104357626351 -1.30393684402688
MMP1058 -1.12418614919061 0.0171051268811484 -0.446030464669748 -0.123855114737072 -0.425834805008197 2.01702123481612 2.27656275289902 0.398904762616024 -0.217584415972377 -0.0453300866609118 -0.253848485301106 0.117858225318371 0.625555195920583 0.698083334578042 0.634621213252766 0.68901731724586 0.362640693287295 -0.108792207986188 0.163188311979283 -0.725281386574589 -0.634621213252766 -0.543961039930942 0.00906601733218237 0.0634621213252766 0.661819265249313 1.11512013185843 0.752479438571136 0.979129871875696 1.70441125845028 2.04891991707321 -0.580225109259671 -0.0906601733218236 -0.988195889207878 -1.16045021851934 -1.34177056516299 -1.56842099846755 -1.24204437450898 -1.01539394120442 -1.08792207986188
MMP1118 0.157304498887865 0.771225782211627 0.207424691187486 0.126480023618199 -1.05187906035202 4.3628311234994 1.29285278005603 -0.560397277288018 0.25561981069278 0.324440528956221 -0.147472967707373 -0.285114404234255 0.196630623609831 0.265451341873272 0.639049526731951 1.0421423051321 0.521071152566052 0.373598184858679 0.481745027844086 -0.648881057912442 -0.796354025619815 -0.353935122497695 -0.550565746107527 -0.875006275063748 -0.363766653678187 1.8581593931129 1.24860445992243 1.09129996103456 1.07163689867358 1.49439273943472 -0.51123962138556 -0.727533307356374 -0.865174743883256 -0.845511681522273 -1.10113149221505 -1.14045761693702 -1.08146842985407 -1.42557202117127 -0.648881057912442
MMP1221 -0.239169503849459 1.14181904461838 -0.0785334112806038 1.03274329306652 0.348769945458865 4.37485307165994 3.02040584466736 -1.27955684559461 -0.872968689050526 -0.633799185201067 0.0597923759623649 0.0717508511548379 0.239169503849459 0.191335603079567 0.0837093263473108 0.0358754255774189 0.0358754255774189 -0.0597923759623648 0.131543227117203 -1.10017971770751 -1.26759837040213 -0.705550036355905 -0.478339007698919 -0.657716135586013 0.11958475192473 0.0358754255774189 0.0478339007698919 0.263086454234405 0.777300887510743 0.920802589820418 0.167418652694621 -0.52617290846881 -0.585965284431175 -1.11213819289999 -1.23172294482472 -0.944719540205364 -0.717508511548378 -0.32287883019677 -0.191335603079567
MMP1227 -0.0332941053220157 -0.641734424555941 0.254995148326814 -0.0648665534326269 -0.328745301529672 2.13479118868616 3.56471905679091 0.451848572227356 0.0142689022808639 0.00475630076028796 -0.0903697144454712 -0.0237815038014398 0.147445323568927 0.214033534212958 0.223546135733534 0.290134346377565 0.0142689022808639 0.917966046735576 0.451848572227356 -0.879915640653273 -0.727714016324058 -0.585024993515419 -0.00475630076028796 -0.166470526610079 0.299646947898141 0.889428242173848 0.318672150939293 0.813327430009241 1.8977640033549 2.07850343224584 0.556487188953691 -0.0903697144454712 -0.69917621176233 -0.661125805680026 -0.994066858900183 -0.936991249776728 -0.746739219365209 -0.604050196556571 -0.689663610241754
MMP1250 0.435691846316045 -0.982543517665735 0.473777338065153 -0.344735213563426 -1.86663423292149 2.89045388365275 3.13932703686045 -0.457207493047702 0.209777555633651 -0.0806836752437122 -0.199019732267823 -0.0699258518778839 0.199019732267823 0.317355789291934 0.274324495828621 0.295840142560278 0.0376523817803989 -0.00537891168291414 0.263566672462793 -1.33934900904562 -0.973583014607459 -0.693879607095924 -0.371144906121076 0.252808849096965 0.00537891168291414 1.36086465577728 0.607817020169298 1.32859118567979 1.58677894645967 1.90951364743452 0.46796531641353 0.371144906121076 -0.704637430461752 -1.03812995480243 -1.0273721314366 -1.08116124826574 -0.650848313632611 -0.489480963145187 -0.242051025731136
MMP1397 0.0276496117297367 -1.45524378167061 -0.619162020416602 -0.550182149255417 -1.64595282422231 2.01539029800119 0.394415448687637 0.24884650556763 -0.214284490905459 -0.193547282108157 -0.449306190608221 -0.338707743689274 -0.0967736410540782 0.0552992234594734 0.0276496117297367 0.0552992234594734 0.0622116263919075 0.152072864513552 0.0622116263919075 -0.705065099108285 -0.559904637527167 -0.338707743689274 -0.145160461581117 -0.324882937824406 -0.0760364322567757 1.46542942167604 3.73269758351445 1.51381624220308 1.17510849851381 1.14054648385164 0.0622116263919075 0.152072864513552 -0.380182161283879 -0.594466652189338 -0.739627113770456 -0.615203860986641 -0.311058131959537 -0.0552992234594732 0.0276496117297367
MMP1428 0.578670266283849 -0.330780425127217 0.0501058763927192 0.231097905288718 -0.932192851488554 3.09361349879503 3.05630319574655 -0.414508488614672 -0.340635688663542 0.209306266528201 0.28317906647933 -0.077976844392859 -0.0697687555094002 0.028728311092106 0.0861849332763179 0.233930533178577 -0.0205202222086471 0.0861849332763179 0.176473910994365 -0.201098177644742 -0.398092310847754 -0.0697687555094002 0.0451444888590237 -0.824912932787614 0.0123121333251883 1.33381444356206 1.07936368817484 1.43231151016357 1.16965266589289 1.21890119919364 -0.0123121333251883 -0.751040132836485 -1.21069311031018 -1.14502839924251 -1.25994164361093 -1.56364093229891 -1.58826519894929 -1.96583728758839 -1.51439239899816
MMP1551 0.217864126926461 -0.520646214022763 -0.053330643513752 0.113843327486232 -0.13421713481096 3.89621886535601 3.17917109702622 -0.123883523154262 -0.457087481982967 -0.0299029193820633 -0.277669965690587 -0.115339831902244 0.149514596910316 0.252038891934533 0.260582583186551 0.234951509430497 -0.0726213756421536 0.679223454535436 0.260582583186551 -0.6621360720314 -0.6621360720314 -0.431456408226913 -0.491262246991039 -0.6621360720314 0.311844730698659 0.867184662079834 3.47301049394534 0.858640970827816 1.20893231216056 1.1833012384045 0.39728164321884 -0.542524394503147 -0.679223454535436 -0.764660367055617 -0.730485602047545 -0.593786542015256 -0.440000099478931 -0.405825334470858 -0.200776744422425
MMP1568 -0.325472925201234 -0.0362773870339448 0.362797907117703 0.527726050151138 -0.160926049590567 2.64502960900185 3.45442942760973 -0.162736462600617 -0.747382272684315 -0.801627760217854 -0.596700362868929 -0.373691136342157 -0.33150020159385 0.0120545527852309 0.325472925201234 0.669027679580314 0.783545931040008 0.289309266845541 -0.488209387801851 -0.0120545527852309 0.0723273167113854 0.0723273167113854 -0.13260008063754 -0.705191337936007 -0.385745689127388 1.72982832468063 1.27175531884186 2.47118332097233 2.63391978357295 2.59172884882464 0.253145608489849 0.783545931040008 -0.337527477986465 -0.446018453053543 -0.452045729446158 -0.385745689127388 -0.325472925201234 -0.307391096023388 -0.253145608489849
MMP1569 -0.472604696761656 0.0342865540713088 0.225067323708166 0.492124252562146 -0.213159084398838 1.59415206096329 2.9074756753474 -0.184395507047455 -0.928935913809141 -0.940944630047233 -0.610704933499711 -0.388543683095014 -0.382539324975968 0.0557788177143789 0.271935710000029 0.572153615952322 0.818332298833202 0.289948784357167 -0.034286554071309 -0.274460878833143 -0.208412939523639 0.0737918920715164 -0.316491385666464 -0.736796453999674 -0.442582906166427 1.4728073338092 0.926410744976027 2.47553513968986 2.87782713366593 2.65566588326123 0.235909561285754 0.620188480904689 -0.562670068547344 -0.904918481332958 -0.826861825785361 -0.718783379642536 -0.724787737761582 -0.598696217261619 -0.592691859142573
MMP1607 -0.378450254562288 -0.0711176149368359 0.228154276862756 1.0086857535941 0.0579972492115009 2.84740408313923 4.13168800575124 0.989792973470599 0.20378090630277 0.194077053621686 -0.262004022389276 -0.13585393753518 0.20378090630277 -0.0291115580432529 0.0679269687675902 0.213484758983855 0.164965495578433 0.892754446659756 0.300819433113613 -0.83453133057325 -0.591935013546142 -0.252300169708192 -0.184373200940602 -0.232892464346023 0.184373200940602 1.09653535296253 2.29010923273589 1.51380101824915 1.59143183969783 1.43617019680048 -0.194077053621686 -0.13585393753518 -0.465784928692046 -0.485192634054215 -0.601638866227227 -0.591935013546142 -0.359042549200119 -0.155261642897349 -0.300819433113613
MMP1720 -0.679963794684555 -1.34188026414152 -0.5184515108005 -0.161000449123758 -0.907911060369791 1.12359786692846 3.2514070180396 -0.369644747445966 -0.296628501036886 -0.177977100622132 0.0136905462017024 0.314882562639156 0.972028780320873 1.16369642714471 1.28234782755946 1.30972891996287 0.825996287502714 0.187104131423267 -0.205358193025537 -1.72044530601394 -1.26409376595719 -0.533931301866395 -0.61607457907661 -0.0958338234119171 1.18195048874698 1.00853690352541 1.07242611913336 1.09068018073563 1.14544236554244 1.11806127313903 0.0684527310085122 0.442660993855046 0.0228175770028374 -0.57956645587207 -1.36449110476968 -1.52877765919011 -1.5013965667867 -1.20020455034925 -0.214485223826672
MMP1721 -0.800959301915857 -0.686986792674174 -0.157833255637226 0.271638756801111 -0.466425242809632 0.92846879744139 3.15965198136599 -0.510678749543667 -0.155891407755435 -0.188144802463456 -0.231149328740818 0.0376289604926913 0.994479670163983 1.08048872271871 1.25250682782815 1.30626248567485 0.919221749178601 0.252651591879498 -0.381665170711583 -1.85457019571121 -1.87607245884989 -0.747203644069155 -0.661194591514432 -0.220398197171477 1.30626248567485 0.467674223266306 1.61804530118572 0.994479670163983 0.843963828193218 0.811710433485197 0.0161266973540106 0.467674223266306 0.231149328740818 -0.725701380930474 -1.46752945921496 -1.63954756432441 -1.51053398549232 -1.06973759114937 -0.0161266973540105
[+] Show/hide bicluster #83 motif PSSM #1. bicluster 83 motif PSSM #1 Methanococcus maripaludis S2 9x4
POSITION A C G T
1 0.181818 0 0 0.818182
2 0 0.363636 0 0.636364
3 0 1 0 0
4 0.454545 0.090909 0.454545 0
5 0 0.909091 0 0.090909
6 0 1 0 0
7 0.272727 0.636364 0.090909 0
8 0.454545 0.545455 0 0
9 0 0.181818 0.636364 0.181818 [+] Show/hide bicluster #83 motif PSSM #2. bicluster 83 motif PSSM #2 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 0 0.2 0 0.8
4 0 0.4 0.6 0
5 0 1 0 0
6 1 0 0 0
7 0 0.8 0.2 0
8 0.2 0.8 0 0 |