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[+] Show/hide bicluster #81 rows and columns.
bicluster 81
Methanococcus maripaludis S2
18x37
[+] Show/hide bicluster #81 rows (genes).
bicluster 81 genes
Methanococcus maripaludis S2
18
[+] Show/hide bicluster #81 rows (short gene names).
bicluster 81 short names
Methanococcus maripaludis S2
18
short_name
[+] Show/hide bicluster #81 rows (long gene names).
bicluster 81 long names
Methanococcus maripaludis S2
18
long_name
[+] Show/hide bicluster #81 rows (NCBI RefSeq gene IDs).
bicluster 81 NCBI RefSeq IDs
Methanococcus maripaludis S2
36
[+] Show/hide bicluster #81 gene upstream sequences.
bicluster 81 upstream sequences
Methanococcus maripaludis S2
18
upstream
[+] Show/hide bicluster #81 columns (arrays; conditions).
bicluster 81 arrays
Methanococcus maripaludis S2
37
[+] Show/hide bicluster #81 ratios.
bicluster 81 ratios
Methanococcus maripaludis S2
18x37
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_minus30m
MMP0212 -0.474595922506585 -0.446261837580819 0.902509839222172 0.41633350703262 -3.91468738134236 0.0637516910829742 0.247923243100455 -0.00708352123144158 -0.219589158174689 -0.517097049895235 -0.219589158174689 0.00708352123144158 0.290424370489104 0.318758455414871 -0.757936771764248 0.276257328026221 0.0920857760087405 0.332925497877754 -0.517097049895235 -1.01294353609614 -0.786270856690015 -0.757936771764248 -0.743769729301365 -0.786270856690015 -1.57962523461147 -0.786270856690015 -0.85710606900443 0.205422115711806 0.40376071019217 0.729602686838482 1.35295255520534 1.50879002229705 1.43795480998264 1.43795480998264 0.687101559449832 0.389593667729286 -0.701268601912716
MMP0297 -0.406971430549397 -0.0137181381084067 1.50808475568018 0.564890731356726 -3.61106917282762 0.28808090027654 -0.169190370003682 -0.306371751087748 -0.699625043528739 -0.983133231102476 -0.791079297584783 -0.653897916500717 -0.406971430549397 0.0137181381084067 -1.0380057835361 0.772788446773574 0.708770468934344 0.84595185001841 0.260644624059726 -0.544152811633464 -0.160044944598078 -0.297226325682144 -0.397826005143793 -1.06544205975292 -0.937406104074454 -0.342953452710166 0.114317817570055 0.434407706766211 0.781933872179179 1.0380057835361 1.4495499267883 1.26664141867621 0.800224722990388 0.919115253263246 0.480134833794233 0.699625043528739 0.141754093786869
MMP0414 0 -0.28227575944296 2.14102869536193 1.67343857052294 -2.9787409287327 0.26659377280724 -0.06272794654288 0.0862509264964602 -0.2352297995358 -0.44693661911802 -0.12545589308576 0.0392049665893001 0.0940919198143202 0.37636767925728 -0.384208672575141 0.588074498839501 0.509664565660901 0.462618605753741 -0.14897887303934 -0.776258338468141 -0.501823572343041 -0.509664565660901 -0.04704595990716 -0.744894365196701 -1.176148997679 -0.04704595990716 -0.431254632482301 0.697848405289541 0.776258338468141 1.27808191081118 1.73285952324706 1.70149554997562 1.58388065020772 1.70933654329348 1.26239992417546 1.23887694422188 -0.439095625800161
MMP0550 -0.687739802341637 -0.252910766022408 2.02112560468279 -0.243518840422578 -2.62730590016163 0.0843035886741362 -0.128673898502629 -0.164170146365423 -0.625621368581747 -0.501384501061968 -0.794228545930019 -0.740984174135828 -0.927339475415498 -0.696613864307336 0.164170146365423 0.36827357157649 0.758732298067225 0.492510439096269 0.403769819439284 0.714361988238733 0.315029199782298 0.128673898502629 -0.581251058753255 -0.998331971141086 -0.829724793792814 -0.572376996787556 -0.377147633542188 -0.448140129267776 0.0576814027770405 0.705487926273034 1.30892413994053 1.66388661856848 2.01884909719642 2.22295252240748 1.88573816771094 1.00720603310678 -0.403769819439284
MMP0588 -0.00583983057076065 0.0642381362783672 2.27662374996322 0.242483407142195 -3.54645677348149 -0.017519491712282 -0.473026276231613 -0.286151697967272 -0.566463565363783 -0.554783904222262 -0.461346615090091 -0.461346615090091 -0.274472036825751 -0.157675425410538 -0.169355086552059 1.15044662243985 1.33732120070419 0.765017804769645 -0.239433053401187 0.239433053401187 -0.367909325957921 -0.741658482486602 -0.110956780844452 -0.81173644933573 -0.566463565363783 -0.0759177974198885 -0.367909325957921 0.134316103127495 0.578143226505304 1.37236018412875 1.85122629093113 1.81618730750656 1.40739916755332 1.03365001102463 0.706619499062039 0.437987292807049 -0.402948309382485
MMP0596 -0.105420683616641 0.0138668508196925 1.62595172926937 0.452261947792089 -2.6752433822231 -0.00402627934575756 -0.0338481629548409 -0.0338481629548409 -0.528891430865625 -0.713787109241942 -0.558713314474709 -0.475212040369275 -0.326102622323858 -0.188921957722075 -0.749573369572842 1.30217222273209 1.39163787355934 1.12920529779941 0.0198312275415092 -0.230672594774791 -0.153135697391174 -0.373817636098392 -0.618357081692875 -0.982184061723693 -1.48319170635629 -0.612392704971058 -0.427497026594741 0.50294574200866 0.77134269449041 1.45724601749933 1.84493050441741 1.71967859325926 1.44531726405569 1.27235033912301 0.66398391349771 0.425408844625043 -0.349960129211125
MMP0597 -0.0189500794571899 0.082117010981156 1.35407447238235 0.172568677492639 -3.44553729806486 0.0252667726095864 -0.00631669315239662 0.0568502383715695 -0.309517964467434 -0.480068679582143 -0.3726848959914 -0.328468043924624 -0.240034339791071 -0.0631669315239662 -0.517968838496523 1.45283942505122 1.34545564146048 1.02962098384065 0.0947503972859493 -0.202134180876692 -0.107383783590743 -0.240034339791071 -0.694836246763628 -0.164234021962312 -1.1180546879742 -0.694836246763628 -0.252667726095865 0.555868997410902 0.776953257744784 1.44020603874643 1.8697411731094 1.90132463887138 1.72445723060428 1.43388934559403 0.915920507097509 0.473751986429746 -0.202134180876692
MMP0899 0.0931716988201819 -0.316783775988618 2.96175622357731 1.35519679474142 -3.15745512814803 -0.0434801261160849 -0.11801748517223 0.142863271524279 -0.453435600924885 -0.316783775988618 -0.242246416932473 -0.441012707748861 -0.37889824186874 -0.428589814572837 -0.900659755261758 0.37889824186874 0.267092203284521 -0.0683259124681334 -0.739162143973443 0.0186343397640364 -0.503127173628982 -0.515550066805006 -0.167709057876327 -0.354052455516691 -0.267092203284521 -0.217400630580424 -0.565241639509104 0.354052455516691 0.590087425861152 1.40999837547875 1.77026227758346 1.49695862771092 1.0745802597261 0.78885371667754 0.465858494100909 0.0310572329400606 -0.614933212213201
MMP0900 -0.343715564335598 -0.714928373818044 2.81448308424941 1.0650343804175 -2.26396740724632 0.24747520632163 -1.3198677670487 -0.233726583748207 -0.371212809482446 -0.178732093454511 -0.508699035216685 -0.824917354405435 -0.811168731832011 -0.563693525510381 0.219977961174783 0.206229338601359 0.0412458677202717 -0.343715564335598 0.219977961174783 1.19613016388788 -0.109988980587391 -0.0824917354405435 -0.426207299776142 -0.0687431128671197 0.0412458677202717 -0.577442148083805 -0.646185260950924 -0.192480716027935 0.164983470881087 0.989900825286522 1.69108057653114 1.69108057653114 1.42985674763609 0.989900825286522 0.591190770657228 -0.302469696615326 -0.811168731832011
MMP0946 -0.153931980695427 0.0369436753669023 1.7959733999298 1.06188452956131 -2.19225793524881 0.116988305328524 -0.190875656062329 0.0615727922781706 -0.31402124061867 -0.437166825175012 -0.289392123707402 -0.184718376834512 -0.0307863961390853 0.400223149808109 -0.498739617453182 0.677300715059877 0.547997851275719 0.381751312124658 -0.41869498749156 -0.831232695755304 -0.615727922781706 -0.621885202009523 -0.535683292820085 -1.18219761174088 -1.54547708618208 -0.498739617453182 0.0492582338225365 0.751188065793682 1.14525393637397 1.54547708618208 1.7671391383835 1.60704987846025 1.34844415089194 1.41617422239792 1.01595107258982 0.979007397222913 0.0554155130503535
MMP1063 0.0559066522841773 -0.00568575415182388 1.43165561465309 0.229415776938939 -3.29309595315716 1.15430456705953 0.0969682565748447 -0.385505593840498 -1.01169505927318 -1.08355286678184 -0.734529230311171 -0.837183241037839 -0.570282813148501 -0.262320780968495 -0.560017412075834 1.65730921962021 1.29802018207687 0.846342534879525 -0.0570127595151581 -0.806387037819839 -0.570282813148501 -1.03222586141851 -0.467628802421833 -0.128870567023826 -0.590813615293835 -0.375240192767831 -0.755060032456505 0.990058149896862 0.805280930588858 0.959261946678861 1.51359360460287 1.66757462069287 1.61624761532954 1.55465520889354 0.979792748824195 0.846342534879525 -0.570282813148501
MMP1068 0.104197395590566 -0.235886405471686 2.33674328387183 2.09104225995078 -3.26530019234506 0.784364997715071 0.184217113487567 0.184217113487567 -0.355915982317186 -0.255891334945936 -0.695999783379439 -1.05608851391594 -1.07609344339019 -0.83603428969919 -0.155866687574685 0.324251619807318 -0.0158321812549343 -0.395925841265687 -0.0758469696776847 0.64433049139532 0.0241776776935657 -0.115856828626185 -0.295901193894436 -0.535960347585438 -0.535960347585438 -0.375920911791437 -0.495950488636937 0.0841924661163162 0.72435020929232 1.36450795246832 1.80461640090183 1.58456217668508 0.904394574560571 0.544305844024069 0.72435020929232 -0.195876546523186 -0.355915982317186
MMP1105 0.352704268439843 0.256512195228977 1.71474862642277 0.899255580366815 -1.51657771718079 0.296592225733504 0.368736280641654 0.224448170825355 -0.112224085412677 -0.0240480183027166 -0.0881760671099608 -0.200400152522638 -0.144288109816299 0.0240480183027165 -0.152304115917205 0.76953658568693 0.69739253077878 0.513024390457953 -0.0320640244036221 -0.216432164724449 -0.0320640244036221 -0.0240480183027166 -0.16032012201811 -0.272544207430788 -0.649296494173347 -0.128256097614488 -0.0881760671099608 0.553104420962481 0.897792683301418 1.31462500054851 1.69939329339197 1.53907317137386 1.36272103715394 1.29859298834669 0.921840701604135 0.825648628393269 -0.120240091513583
MMP1106 0.211635424268693 -0.00604672640767694 1.52071162592157 0.702875093570758 -3.81078897134751 0.0907008961151539 0.0423270848537385 0.151168160191923 -0.308383046791524 -0.344663405237585 -0.417224122129708 -0.973522951635986 -0.574439008729309 -0.489784839021831 -0.0786074432998001 0.997709857266694 0.937242593189924 0.320476499606877 0.00604672640767689 -0.320476499606877 0.126981254561216 0.126981254561216 -0.380943763683647 -0.405130669314354 -0.61071936717537 -0.45350448057577 -0.320476499606877 0.320476499606877 0.997709857266694 1.25167236638912 1.72331702618793 1.84425155434146 1.68703666774186 1.71122357337257 1.21539200794306 0.792121159405678 -0.405130669314354
MMP1131 -0.153355951555327 -0.0645709269706641 2.48550697990758 0.494956220645696 -2.65821710632982 0.419711025309316 0 -0.250212342011323 -0.451996488794649 -0.556924245121978 -0.234069610268657 -0.121070488069995 0 0.435853757051982 -0.484281952279981 0.799065221261968 0.863636148232632 0.66992336732064 0.145284585683994 -0.258283707882656 -0.0887850245846631 -0.104927756327329 -0.129141853941328 -0.548852879250645 -0.75063702603397 -0.129141853941328 -0.0645709269706641 0.581138342735977 0.742565660162637 1.33177536876995 2.07434102893258 2.01784146783325 1.71920093059393 1.57391634490994 0.99277800217396 0.710280196677305 0.056499561099331
MMP1242 -0.571405952411088 -0.534835971456778 1.95388154046863 0.65843733243004 -4.12455074171648 0.0502837238121757 -0.196563647629414 0.150851171436527 -0.214848638106569 -1.71421785723326 -0.0228562380964435 0.0685687142893305 0.159993666675105 0.379413552400962 -0.434268523832427 1.01938821910138 1.03767320957854 0.662830904796862 -0.342843571446653 -0.671973400035439 -0.671973400035439 -0.726828371466904 -1.03767320957854 -0.8091108286141 -1.23880810482724 -0.955390752431339 -0.461696009548159 0.123423685720795 0.415983533355272 1.11995566672573 1.58622292389318 1.67764787627895 1.42165800959879 1.21138061911151 0.617118428603975 0.370271057162385 -0.470838504786736
MMP1353 -0.670463856827315 -0.549659558299871 2.31328478629852 1.00230066499387 -2.49008100740248 0.114764083601072 -0.090603223895583 -0.98455503299867 -0.827509444912992 -0.694624716532804 -0.489257409036149 -0.791268155354759 -0.887911594176714 -0.57382041800536 -0.839589874765737 0.223487952275772 0.489257409036149 0.489257409036149 -0.211407522423027 -0.513418268741637 -0.404694400066938 -0.259729241834005 -0.35637268065596 -1.2382440599063 -1.06911804196788 -0.187246662717538 -0.295970531392238 -0.0181206447791166 0.235568382128516 0.76710729564927 1.29864620917002 1.7818634032798 1.87850684210176 1.70938082416333 1.51609394651942 1.22616363005356 -0.513418268741637
MMP1427 0.0384729412730728 -0.0555720262833274 1.62770413686611 1.15646539173934 -3.14696611598437 0.389004183983292 0.166716078849982 0.380454641478164 -0.1410674513346 -0.303508758932019 -0.0812206537987093 -0.0384729412730728 0.1410674513346 0.611292289116601 -0.440301439014055 0.833580394249911 0.671139086652492 0.414652811498674 -0.329157386447401 -0.936174904311438 -0.568544576590965 -0.45740052402431 -0.192364706365364 -0.397553726488419 -1.16701255194988 -0.200914248870491 -0.106869281314091 0.765184054208892 1.15846300944475 1.51754379466009 2.00486771745235 1.85097595236006 1.63723738973188 1.62013830472162 1.09006666940373 0.987472159342202 -0.123968366324346
[+] Show/hide bicluster #81 motif PSSM #1. bicluster 81 motif PSSM #1 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 0.071429 0.928571 0
2 0 0 1 0
3 0 0 0 1
4 0.071429 0 0.928571 0
5 0.857143 0 0 0.142857
6 0.357143 0 0 0.642857
7 0.214286 0 0.071429 0.714286
8 0.142857 0 0 0.857143 [+] Show/hide bicluster #81 motif PSSM #2. bicluster 81 motif PSSM #2 Methanococcus maripaludis S2 13x4
POSITION A C G T
1 0 0.5 0.5 0
2 0 0 0.666667 0.333333
3 0 0.166667 0.666667 0.166667
4 0 0 0 1
5 0 0 0 1
6 0 0 0.166667 0.833333
7 0 0 0 1
8 0.5 0 0 0.5
9 0 0.5 0.5 0
10 0.333333 0 0.666667 0
11 0 0 0.166667 0.833333
12 0.5 0 0 0.5
13 0 0 1 0 |