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bicluster 80
Methanococcus maripaludis S2
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Methanococcus maripaludis S2
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Methanococcus maripaludis S2
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bicluster 80 long names
Methanococcus maripaludis S2
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[+] Show/hide bicluster #80 rows (NCBI RefSeq gene IDs).
bicluster 80 NCBI RefSeq IDs
Methanococcus maripaludis S2
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bicluster 80 upstream sequences
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bicluster 80 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_minus30m
Antisense_4 -0.336462300601686 -0.273572150956511 2.99558263310166 0.857612034580434 1.43825100129298 1.4528285040387 1.58743375666475 1.52060442589542 -3.66870250193066 -2.35805250120533 0.342751315566204 0.349040330530721 -0.0471676122338813 -0.0283005673403288 0.311306240743616 1.26723651535028 1.07856606641475 0.644624033863044 0.455953584927519 -0.0220115523758113 -0.260994121027476 -0.952785767124401 -0.965363797053436 -0.959074782088919 -0.908762662372778 -0.933918722230849 -0.883606602514709 -0.726381228401771 -0.996808871876024 -0.940207737195366 -0.405641465211379 0.531421764501729 0.896184632443744 0.575444869253351 -0.135213821737126 -0.399352450246861 -0.374196390388791
MMP0285 -0.421708657419501 -0.873975913202734 0.694879039452562 1.71008672217844 1.66639120851177 1.3254742413105 1.05345819199547 0.660382586763044 -3.80658640117011 -3.35932835972442 -0.281139104946334 0.971763427966676 -0.140569552473167 0.0794523557457031 0.378926619710276 0.50727273283795 0.30558598363732 0.0427820377092248 -0.171128150836899 -0.262803945928095 -0.22002190821887 -0.0366703180364783 -0.336144582001052 -0.916757950911959 -1.8701862198604 -1.8579627805149 -1.44847756244089 -1.3568017673497 -1.21012049520379 -0.0122234393454928 -0.293362544291827 0.446155536110487 0.531719611528936 -0.0550054770547175 -0.122234393454928 0.0366703180364784 -0.189463309855138
MMP0287 -0.294622148246338 -0.788547514424022 0.889466440560376 1.72132744883311 1.83675500799843 1.63811526181422 1.44743153544804 0.907465314868538 -3.60346989130069 -3.73741803127586 0.485260008876321 0.684563226807667 -0.225299289835435 -0.311952862849063 -0.12131500221908 0.987850732355368 0.918527873944465 0.147311074123169 0.18197250332862 0.0259960719040887 0.216633932534072 -0.103984287616354 0.147311074123169 -0.953189303149916 -1.83705574788893 -1.67241395916304 -1.20448466488944 -0.935858588547191 -0.346614292054515 -0.0866535730136287 -0.112649644917717 0.615240368396764 0.771216799821296 -0.147311074123169 -0.0866535730136287 -0.173307146027257 -0.0606575011095401
MMP0349 1.5165119594225 1.27132739113263 2.23524975332321 2.0352849926849 2.11469684177004 2.2848650755396 2.1576147749663 1.73923327150115 -2.61830370205266 -3.53639208740994 0.227022748416542 0.290589117973173 0.472207316706407 1.46202649980253 1.11695192220939 0.354155487529805 0.38139821733979 0.463126406769745 0.399560037213113 0.32691275771982 0.254265478226527 -0.236103658353203 -0.417721857086437 -0.481288226643068 -0.426802767023098 -0.463126406769745 -0.254265478226527 0 -0.154375468923248 -0.190699108669895 -0.0998900093032784 -0.245184568289865 -0.290589117973173 0.136213649049925 0.390479127276452 0.363236397466467 -0.308750937846497
MMP0350 1.21662133798051 1.24884971779457 1.74825208641573 0.925547164453921 1.65184135551349 1.7722638166249 1.8784975320958 1.8034305613795 0.154382568458011 -2.16080902669252 -0.596225026559987 0.934623014607547 0.0805709495351333 -0.07251385458162 0.29005541832648 -0.0644567596281067 -0.19337027888432 0.112799329349187 -0.153084804116753 -0.225598658698373 -0.136970614209727 -0.0644567596281067 -1.16022167330592 -0.9668513944216 -0.94268010956106 -1.68393284528429 -1.80478926958699 -1.68393284528429 -2.08678759295995 -0.0161141899070267 -0.233655753651887 0.201427373837833 0.0161141899070267 -0.45925441235026 -0.26588413346594 0.02417128486054 -0.209484468791347
MMP0351 0.934083758830149 0.921913286402394 1.25347332679127 0.824090351567077 1.19219832674174 1.32839552788153 1.44261066513176 1.50928959226343 -4.89087980679409 -2.81513186555818 -0.136917814812237 0.392497735795079 -0.00912785432081579 0.623736711922412 0.349901082297938 0.00912785432081578 -0.0517245078179561 -0.00912785432081579 -0.319474901228552 -0.0212983267485702 0.0334687991763245 0.13083257859836 -0.544628641142008 -0.289048720159167 -1.52435167157624 -1.65822686828153 -1.46958454565134 -1.45132883700971 0.0699802164595877 0.197770176951009 -0.362071554725693 -0.106491633742851 -0.155173523453868 -0.599395767066903 -0.386412499581202 -0.0882359251012193 -0.362071554725693
MMP0352 0.781093230045102 0.659589838704753 0.894241436340525 0.640428975200128 0.900707582123841 1.1787517510001 1.1230384147616 1.19808486725898 -4.38833656171395 -3.39921254559523 -0.329794919352376 0.342813139853128 -0.0650911025037585 0.0737699161709263 -0.0954669503388458 0.0477334751694229 -0.104145764006014 0.00433940683358389 -0.104145764006014 -0.108485170839597 0.0781093230045102 -0.130182205007517 -0.663929245538337 -1.49709535758644 -1.89632078627616 -1.76613858126865 -1.44502247558344 -1.41898603458193 -1.44936188241702 -0.0043394068335839 -0.147539832341853 0.0998063571724296 0.0173576273343356 -0.425261869691222 -0.25602500318145 0.0216970341679195 -0.112824577673181
MMP0353 0.746339711816252 0.740620633564786 1.50660500743474 0.831387958640526 1.11485172163325 1.22873649321117 1.27427318398536 1.23536470473688 -4.22938277406796 -4.07030562882199 -0.448947642740044 -0.197308199675561 0.048612165137457 0.0200167738801294 -0.557610129517889 0.260218060441682 0.111522025903578 0.151555573663837 0.13439833890944 0.048612165137457 0.18587004317263 0.037174008634526 -0.048612165137457 -0.706306164055993 -1.95306522287548 -1.8329645795947 -1.42691002374065 -1.54129158876996 0.0257358521315949 0.0543312433889226 -0.105802947652112 0.0428930868859915 -0.0200167738801293 -0.374599625470992 -0.294532529950475 -0.0428930868859914 -0.0886457128977157
MMP0354 0.818227238432121 0.688349898998451 1.35353765511058 0.910959905554706 0.451570443550524 1.28570440912978 1.31463617099217 1.57013489932361 -1.66220750383173 -1.86082013931949 0.831214972375488 -0.38963201830101 0.246766944923973 -1.31176112828007 -0.675362165055084 0.493533889847946 0.363656550414276 0.0519509357734679 0.688349898998451 0.623411229281616 0.818227238432121 -0.12987733943367 -0.961092311809158 -0.77926403660202 -2.06504969699535 -1.70139314658108 -1.02603098152599 -0.792251770545387 -1.92218462361832 -0.441582954074478 -0.090914137603569 0 -0.116889605490303 -0.623411229281616 -0.285730146754074 -0.467558421961212 0.012987733943367
MMP0356 0.630265348053959 0.318595670444858 2.12696108971492 1.12369200641176 1.15986556661386 1.38253626398744 1.45279845969428 1.02038364793786 -3.76432587214991 -2.06760853784715 -0.173149820893945 -0.283965706266069 -0.110815885372125 0.00692599283575779 -0.0346299641787889 0.429411555816983 0.526375455517592 0.588709391039412 0.214705777908491 0.12466787104364 -0.0207779785072734 -0.24933574208728 -1.5098664381952 -1.85616607998309 -1.04582491819943 -0.630265348053959 -0.664895312232748 -1.3297906244655 -1.58605235938853 -0.24933574208728 -0.0554079426860623 1.03889892536367 1.10815885372125 0.664895312232748 0.547153434024865 0.477893505667287 -0.0415559570145467
MMP0381 0.919688629315829 1.04905142552729 2.10399342236335 1.05620803009671 1.53288345114599 1.7048370803347 1.70727096049367 1.41849108367436 -2.49366697823403 -2.57447179951187 -0.365854158035528 0.131384089902261 -0.305215347311407 0.268832060876935 0.604366813550402 1.23501044508126 0.992455202184774 0.786283245722764 0.470961429957337 -0.00606388107241207 -0.183937725863166 -0.454791080430905 -0.697346323327387 -0.632664925221658 -1.04905142552729 -1.1582012848307 -1.08139212458015 -0.972242265276734 -0.79436842048598 -0.414365206614824 -0.119256327757437 0.7539425466699 0.988412614803166 0.386067094943568 0.0586175170333166 0.131384089902261 -0.0141490558356282
MMP0393 0.770908982429276 0.645896715008312 2.12342254798018 1.76019107604626 1.8806148932038 1.93870997426718 1.92389220249479 1.71918739611592 -3.41897379466704 -3.42555947216784 -0.338574890931777 -0.0781326671381024 -0.125012267420964 0.255233379317801 0.416707558069879 -0.145847645324458 -0.250024534841927 0.00520884447587349 0.0729238226622287 0.0885503560898492 -0.187518401131446 -0.151056489800331 -0.953218539084848 -0.765700137953403 -1.12511040678867 -1.18761654049915 -0.901130094326113 -0.849041649567378 -0.948009694608975 -0.109385733993343 0.23960684589018 0.526093292063222 0.307321824076536 0.0833415116139757 0.437542935973373 0.67194093738768 0.296904135124789
MMP0398 0.866967548616974 0.933070646165482 3.11876101388306 1.55339733252768 1.66995963974682 1.83098859049803 2.06671538896528 1.98696625779552 -2.69695577551554 -3.19879363072908 -0.231360841419779 0.363567036516795 -0.216106280447046 0.205936573131891 0.35339732920164 0.81103415838362 0.556791475504743 0.668658255971449 0.307633646283442 0.00762728048636634 -0.0330515487742542 -0.444924695038036 -0.56187632916232 -0.93815549982306 -0.887306963247284 -0.907646377877595 -0.846628133986664 -0.668658255971449 -0.633064280368406 -0.419500426750149 -0.251700256050089 0.439839841380459 0.785609890095733 0.770355329123 0.409330719434993 0.338142768228908 -0.109324353637918
MMP0401 0.403907895446303 0.413411610633275 2.93565374260258 1.49633326975647 1.87325728567984 1.95007253675439 1.91674301709739 1.83091591561537 -4.6069748715141 -2.39892967873475 -0.270855882828697 -0.0902852942762326 -0.565471053624825 0.0332630031544015 -0.403907895446303 0.175818730958979 0.213833591706866 0.327878173950528 0.251848452454754 0.0427667183413733 -0.156811300585036 -0.375396749885388 0.3373818891375 -0.0807815790892607 -0.651004490307571 -0.622493344746656 -0.441922756194191 -0.204329876519895 0.251848452454754 -0.213833591706866 -0.175818730958979 0.147307585398063 0.23284102208081 0.0142555727804578 -0.38490046507236 -0.356389319511444 -0.223337306893838
MMP0705 0.361138968745298 -0.11207761098992 1.37123602189678 2.09474418551094 1.41415918157394 0.835540084298 1.27470579219725 1.12644285353539 -3.81328104069557 -3.02923060638086 0.0622653394388445 0.323779765081991 0.311326697194222 -0.498122715510755 -0.921527023694898 0.958886227358205 1.10832304201143 0.585294190725138 0.473216579735218 0.0996245431021511 -0.149436814653227 -0.0498122715510755 0.535481919174062 -0.747184073266133 -1.33247826399127 -1.02115156679705 -0.635106462276213 -0.647559530163982 0.734731005378364 -0.0373592036633066 -0.249061357755378 0.33623283296976 0.821902480592747 0.485669647622987 -0.174342950428764 -0.5603880549496 -0.298873629306453
MMP0911 0.388111095008727 0.505076082545603 2.0791810810243 2.25395056946276 1.40282957321337 1.54943108549326 1.48349241403113 1.38314400428277 -2.47794926010837 -1.50807464773269 -1.07926783954482 0.239246565416338 -0.356211552953215 -0.0265829517129265 0.388111095008727 0.132914758564632 -0.409377456379068 0.217980204045997 -0.217980204045997 0.515709263230774 0.685840154193503 -0.558241985971456 -0.962302852007939 -1.34509735667408 -2.44031496724665 -2.11068636600636 -1.06863465885964 -0.845337864471062 -0.111648397194291 -0.515709263230774 -0.515709263230774 -0.962302852007939 -0.898503767896915 -0.898503767896915 0.111648397194291 0.600774708712138 -0.345578372268044
MMP0920 0.199468833644128 0.354986907332769 1.43098166370591 0.861561419222949 0.955701499328353 1.21084654713511 1.27211392003636 1.25013093995798 -3.48038240119061 -1.98574332225706 -1.00410582359841 -0.24003876591073 -0.436126771865974 -0.0709973814665539 -0.618691467065684 0.118328969110923 -0.0236657938221847 0.0236657938221846 -0.483458359510343 -0.632214777821218 -0.747162919243258 -0.720116297732189 -1.17314720804258 -1.09876899888714 -1.4774217000421 -1.24076376182025 -1.70055632750841 -2.39700683141841 -1.33542693710899 -0.699831331598888 -0.578121534799082 0.889157682176365 1.07172237737608 0.334701941199468 0.158898901377525 0.226515455155196 -0.395556839599372
MMP1094 0.492428359599512 0.120594700310085 2.31817175459713 0.96181503149576 1.39396749674733 1.76773324392866 1.97859097706314 2.06617104914372 -4.31053578203578 -1.22027507048541 -0.361784100930254 0.854212460529766 0.070346908514216 1.09540186114993 0.43213100944447 -0.150743375387606 -0.251238958979343 -0.0200991167183474 -0.482378801240338 -0.462279684521991 -0.482378801240338 -0.492428359599512 -0.994906277558198 -0.814014227093071 -1.81897006301044 -1.46723552043936 -1.1456496529458 -0.693419526782986 -0.070346908514216 -0.361784100930254 -0.954708044121503 0 -0.0502477917958686 -0.100495583591737 0.0100495583591737 0.582874384832075 -0.743667318578855
MMP1286 0.81291296955955 0.892498854691255 1.6165641317369 2.03171752328621 1.76082395155024 1.41651701676161 1.2573691791108 0.881746062598171 -3.72618271833599 -2.37992893022999 -0.051162354727524 0.0966400033742123 -0.210334124990932 0.449091780386045 0.505938841194405 0.221703537152605 0.449091780386045 0.414983543901029 0.00568470608083602 0.346767070930997 0.233072949314277 0.0511623547275242 -0.710588260104502 -0.198964712829261 -1.16536474657138 -1.89300712491839 -1.91574594924174 -1.96122359788843 -1.38138357764315 0.164856476344245 -0.1421176520209 0.460461192547717 0.142117652020901 -0.631002374972798 -0.039792942565852 0.744696496589518 -0.00568470608083602
MMP1287 0.580961657218263 0.245561112844833 0.867487089239712 1.24304315234489 1.21942440772109 1.05436364198986 0.923829517386554 0.969264043039989 -4.14825074476287 -4.86330372486511 0.227593226539113 0.263528999150552 0.0479143634819186 0.33540054437343 0.580961657218263 -0.161710976751475 -0.0179678863057195 -0.113796613269557 -0.101818022399077 -0.101818022399077 0.0479143634819186 0.167700272186715 -0.533047293736344 -1.14994472356605 -1.55721681316235 -1.2038483824832 -0.874437133545014 -0.65283320244114 -0.772619111145937 0.155721681316235 0.0658822497876381 0.197646749362914 0.0479143634819186 -0.479143634819186 0.0958287269638372 0.371336316984869 0.0718715452228779
MMP1288 0.312638558088332 0.124302077312228 1.03862647539106 1.45794217611379 1.10541310764965 0.906640676469961 0.971613070942694 0.854821513478151 -5.01423764090112 -3.73202510081362 -0.237303965777891 -0.124302077312229 -0.259904343471023 0.0791013219259636 -0.0263671073086546 -0.0715678626949195 -0.101701699619096 0.0791013219259636 -0.237303965777891 0.048967485001787 -0.0263671073086546 0.10923515885014 -0.342772395012509 -1.25432096196885 -1.962466129687 -1.49539165736226 -0.855047622723511 -0.591376549636966 0.169502832698493 0.0640344034638753 0.0113001888465662 0.297571639626244 -0.00376672961552208 -0.711911897333672 0.116768618081184 0.500975038864436 -0.0715678626949195
MMP1315 0.290945352890328 0.28124717446065 2.16194714645716 1.16422763444904 1.25443841241703 1.55003197615238 1.57601501576129 1.53105559890993 -3.89137113931979 -2.62973401150887 -0.727363382225819 -0.24245446074194 0.0678872490077431 0.620683419499366 -0.126076319585809 0.872836058670983 0.475210743054202 0.455814386194847 -0.0969817842967759 -0.0678872490077431 -0.0969817842967759 -0.0969817842967759 -1.11529051941292 -0.339436245038716 -0.155170854874841 -0.872836058670983 -1.11529051941292 -1.53231219188906 -0.504305278343235 -0.0581890705780655 -0.494607099913557 1.10559234098325 1.43533040759228 0.688570668507109 0.80494880966324 0.853439701811628 -0.28124717446065
MMP1587 0.0793390846750947 -0.145454988571007 0.991785262713197 1.2803768856851 1.23280901845952 1.17568778659322 1.36177961962214 0.789970155338362 -3.77614634007775 -3.81137441433928 -0.476034508050569 0.515704050388116 0.132231807791825 1.11074718545133 0.780167665971765 -0.0925622654542773 -0.251240434804467 0.211570892466919 0.211570892466919 0.0132231807791825 0.158678169350189 0.489257688829751 -1.03140810077623 -1.26942535480152 -0.899176292984407 -1.15041672778887 -0.661159038959123 -0.952069016101137 -0.846283569867677 0.542150411946481 0.10578544623346 0.423141784933839 0 -0.15867816935019 1.08430082389296 1.42810352415171 0.198347711687737
[+] Show/hide bicluster #80 motif PSSM #1. bicluster 80 motif PSSM #1 Methanococcus maripaludis S2 17x4
POSITION A C G T
1 0.166667 0 0 0.833333
2 0.5 0.5 0 0
3 0 1 0 0
4 0.833333 0 0.166667 0
5 0 0.833333 0 0.166667
6 0.166667 0.833333 0 0
7 1 0 0 0
8 1 0 0 0
9 0.5 0.166667 0 0.333333
10 0 0.166667 0.166667 0.666667
11 0 0.833333 0.166667 0
12 0 0.833333 0.166667 0
13 0.166667 0 0.5 0.333333
14 0.166667 0.5 0.333333 0
15 0.666667 0.333333 0 0
16 0.666667 0 0 0.333333
17 0 0 0 1 [+] Show/hide bicluster #80 motif PSSM #2. bicluster 80 motif PSSM #2 Methanococcus maripaludis S2 24x4
POSITION A C G T
1 0 0 0 1
2 1 0 0 0
3 0 1 0 0
4 0.666667 0 0 0.333333
5 1 0 0 0
6 0 1 0 0
7 1 0 0 0
8 0 1 0 0
9 1 0 0 0
10 0 0 0 1
11 0.666667 0.333333 0 0
12 0 0 0 1
13 0 0.333333 0.666667 0
14 1 0 0 0
15 1 0 0 0
16 0 0 0.666667 0.333333
17 0 0 0 1
18 0.666667 0 0 0.333333
19 1 0 0 0
20 1 0 0 0
21 0.666667 0.333333 0 0
22 1 0 0 0
23 0 1 0 0
24 1 0 0 0 |