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[+] Show/hide bicluster #76 rows and columns.
bicluster 76
Methanococcus maripaludis S2
19x37
[+] Show/hide bicluster #76 rows (genes).
bicluster 76 genes
Methanococcus maripaludis S2
19
[+] Show/hide bicluster #76 rows (short gene names).
bicluster 76 short names
Methanococcus maripaludis S2
19
short_name
[+] Show/hide bicluster #76 rows (long gene names).
bicluster 76 long names
Methanococcus maripaludis S2
19
long_name
[+] Show/hide bicluster #76 rows (NCBI RefSeq gene IDs).
bicluster 76 NCBI RefSeq IDs
Methanococcus maripaludis S2
36
[+] Show/hide bicluster #76 gene upstream sequences.
bicluster 76 upstream sequences
Methanococcus maripaludis S2
19
upstream
[+] Show/hide bicluster #76 columns (arrays; conditions).
bicluster 76 arrays
Methanococcus maripaludis S2
37
[+] Show/hide bicluster #76 ratios.
bicluster 76 ratios
Methanococcus maripaludis S2
19x37
GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_minus30m
MMP0002 -0.746418668285313 0.297615892901004 0.0674978294079358 -0.326492192973049 -0.384602816692168 -0.63079815918217 3.69631252711072 5.79449341535584 0.205908598147673 -0.115823586458066 -0.173735379687099 0.0836503679974921 0.0450425058448034 0.13512751753441 0.173735379687099 0.14799680491864 -0.0193039310763443 0.0643464369211477 0.373209334142657 0.43112112737169 0.411817196295345 -0.456859702140148 -0.727114737208969 -0.186604667071328 0.0643464369211477 -0.212343241839787 0.630595081827247 0.842938323667035 0.804330461514346 0.842938323667035 0.675637587672051 -0.160866092302869 -0.0707810806132623 -0.495467564292837 -0.456859702140148 -0.341036115682083 0.0257385747684591
MMP0054 0.101660640572044 -0.862121022215353 -0.455900758228113 -0.543052498258384 -0.364624274727496 -0.896316435083458 3.41962416233265 6.01022636276984 0.216581364696963 -0.0397802506586258 -0.0663004177643765 0.0132600835528753 0.00442002785095844 0.137020863379711 -0.0221001392547921 -0.234261476100797 -0.145860919081628 0.0839805291682103 0.154700974783545 0.216581364696963 0.800025041023477 -0.00442002785095844 -0.632063982687056 -0.119340751975878 -0.251941587504631 0.190061197591213 0.685104316898557 1.04754660067715 0.835385263831144 0.879585542340729 0.50830320286022 0.251941587504631 -0.243101531802714 -0.402222534437218 -0.340342144523799 -0.0928205848701271 -0.243101531802714
MMP0055 0.0273178039831696 -0.266110268313956 -0.161084699620386 -0.131245220371877 -0.56838183963351 -0.420711656930276 3.72051458770751 5.70084566941377 0.136589019915849 -0.26927549640553 -0.0663432382448408 -0.0273178039831697 0.0117076302785013 0.0819534119495091 0.167809367325185 0.0507330645401723 -0.0975635856541776 0.0741483250971749 0.339521278076538 0.347326364928872 0.464402667713885 -0.136589019915849 -0.331716191224204 -0.238055148996193 -0.144394106768183 0.284885670110198 0.862462097182929 1.25271643979964 1.25271643979964 1.09661470275296 0.667334925874574 0.355131451781206 -0.245860235848527 -0.643919665317572 -0.534648449384893 -0.433182320304548 -0.17561445417752
MMP0269 0.745918369101412 0.0917009063875131 0.153450459231898 -0.0551579804951089 -1.24288604940134 -0.752330271371266 2.99374848753863 5.23918651795179 0.156402238682554 -0.469206716047662 -0.493268598921902 -0.312804477365108 -0.0240618828742391 -0.0962475314969563 -0.397021067424945 -0.397021067424945 -0.144371297245435 0.409052008862065 0.745918369101412 0.372959184550706 -0.204526004431032 -0.132340355808315 -0.216556945868152 0.0240618828742391 1.14293943652636 0.0962475314969565 1.01059908071804 1.27527979233467 1.31137261664603 1.106846612215 1.07075378790364 0.132340355808315 0.324835418802228 -0.745918369101412 -0.300773535927989 -0.120309414371195 0.252649770179511
MMP0527 -0.234183492297579 -1.1509074908615 -0.636465588693151 -0.704973483416967 -1.28955012300659 -0.89440957830744 2.28894826812921 6.02109234691473 0.282221131743237 -0.342268181050308 -0.294230541604651 -0.186145852851922 -0.0780611640991931 -0.0780611640991931 -0.150117623267679 -0.186145852851922 -0.00600470493070717 -0.0660517542377788 0.162127033129093 1.19493628121073 0.306239951466065 -0.0420329345149501 -0.282221131743237 0.0660517542377788 0.666522247308495 0.270211721881822 0.582456378278595 0.942738674121024 1.19493628121073 1.14689864176507 1.30302096996345 0.162127033129093 -0.450352869803037 -0.0300235246535358 0.0420329345149501 0.00600470493070717 -0.294230541604651
MMP0630 -0.049190370490863 -0.833792178995058 -0.575825117712247 -0.798876999002788 -0.809008636054116 -1.11054173924661 3.77875242481346 6.02166303249004 -0.0129448343397008 -0.220062183774913 -0.100969707849666 -0.0595462379626236 -0.0129448343397008 -0.0336565692832221 -0.0336565692832221 0.00258896686794016 -0.0750800391702645 -0.0440124367549827 0.194172515095512 0.00776690060382047 -0.0181227680755811 0.0854359066420251 0.0440124367549826 0.142393177736709 0.0543683042267432 -0.349510527171921 0.271841521133716 0.313264991020759 0.390933997058963 0.422001599474245 0.370222262115442 -0.359866394643682 -0.17346078015199 0.0802579729061448 0.17346078015199 0.251129786190195 -0.178638713887871
MMP0678 0.0330236970695523 -0.0726795212057847 -0.454998560834063 -0.850075370153747 -1.10274559317862 -1.4328737287765 2.17484279025075 6.11409577346111 0.0605434446275125 -0.247677728021642 -0.51186730457806 -0.324733021183931 -0.357756718253483 0.0165118485347762 -0.220157980463682 -0.0770552931622887 -0.198142182417314 -0.434812011415772 0 0.236669828998458 0.170622434859353 0.143102687301393 0.0880631921854728 -0.0605434446275125 0.754041083088111 -0.0990710912086569 1.07877410427204 1.11179780134159 1.18885309450388 1.4530426710603 1.11179780134159 -0.0220157980463682 -0.0880631921854728 -0.302717223137563 -0.24217377851005 -0.159614535836169 0.148606636812985
MMP0885 -0.0850616242805088 -0.221129783219491 -0.473898571760784 -0.640429674004265 -1.05963811746711 -1.34688369470864 2.95859918613008 4.68710241025709 -0.139744097032264 -0.176199078866768 0.00607583030575063 0.0243033212230025 -0.00607583030575063 0.0607583030575063 -0.0668341333632569 -0.048606642446005 -0.19442656978402 -0.0243033212230025 0.644038012409566 0.692644654855571 0.929602036779845 0.504293915377302 0.261260703147277 0.48606642446005 0.200502400089771 -0.346322327427785 0.546824727517556 0.716947976078573 0.656189673021067 0.668341333632568 0.29771568498178 -0.346322327427785 -0.206578230395521 -0.558976388129057 -0.401004800179541 -0.382777309262289 -0.249109042535775
MMP0995 -0.526306095616856 0.0487870715948363 -0.0258390462885408 0.133379281632483 0.060746385358198 -0.00869736587625436 2.20138378581061 6.81417076953288 0.167609285131634 -0.0972439136273319 -0.261452896857891 -0.309126472634504 -0.123729233503228 -0.129026297478408 -0.166105745304663 -0.314423536609684 -0.293235280708967 -0.0336791459251801 0.00869736587625439 -0.245561704932353 -0.42036481611327 0.337115332337372 0.342412396312551 0.294738820535937 -0.102540977602511 0.0722621335784062 0.480136059667214 0.792662834202793 0.962168881408531 0.718503938550283 0.866821729855303 0.114638645379841 -0.139620425428766 -0.272047024808249 -0.351502984435939 -0.245561704932353 -0.102540977602511
MMP1002 0.157576745969917 -0.451445514503141 -0.247047905154166 -0.0521981779161406 0.0427941068082493 -0.0899031820961162 2.90162397002321 5.26803864761291 -0.226264045495265 -0.581821831273539 -0.634347413263512 -0.553538825586631 -0.537377108051255 -0.581821831273539 -0.577781401889695 -0.424245085303622 -0.282830056869082 0.0121212881515321 0.424245085303622 -0.185859751656825 0.585862260657383 0.0525255819899723 0 -0.254547051182173 0.323234350707522 -0.343436497626742 0.181819322272981 0.7434390066273 0.630306983879667 0.303032203788302 -0.339396068242898 -0.359598215162118 -0.363638644545962 0.0363638644545962 0.117172452131477 0.254547051182173 -0.367679073929806
MMP1003 0.0444779317496987 -0.231525394988712 -0.17424293965872 -0.0740568586424265 0.0674610753050603 0.0575065003413302 3.01052181697136 5.07897727666561 -0.346154338399829 -0.585948405224292 -0.609154282658917 -0.585948405224292 -0.558874881550562 -0.473786664290269 -0.435110201899226 -0.357757277117142 -0.214654366270285 0.0212720543150733 0.346154338399829 -0.0444779317496987 0.36549256959535 0.0406102855105945 -0.102492625336262 -0.311345522247891 0.214654366270285 -0.203051427552972 0.288139644813266 0.787066009657712 0.713580731114731 0.41963961694281 0.0444779317496987 -0.210786720031181 -0.384830800790871 0.0174044080759691 0.0638161629452199 0.187580842596555 -0.361624923356246
MMP1004 -0.0222804997379209 -0.558893624900646 -0.187488032421383 -0.218843717623471 0.0322812357282851 -0.0339513634215566 2.71288503342462 5.25481956082774 -0.137396415050512 -0.449323411381405 -0.415902661774524 -0.40847582852855 -0.31564041295388 -0.453036828004392 -0.430756328266471 -0.334207496068814 -0.122542748558565 0.08169516570571 0.605286909546852 0.285933079969985 0.193097664395315 0.185670831149341 0.129969581804539 -0.144823248296486 0.620140576038799 -0.167103748034407 0.453036828004392 0.902360239385797 0.64242107577672 0.8169516570571 0.701835741744509 -0.170817164657394 -0.178243997903367 -0.0297073329838946 0.0111402498689604 0.137396415050512 -0.196811081018301
MMP1005 0.0208966182370024 -0.253950962830135 -0.206772145420999 -0.0160648847543941 0.0999425834224635 0.0352027634968671 2.76009395427202 5.04496404831017 -0.0557243152986729 -0.518932686218892 -0.498036067981889 -0.494553298275722 -0.442311752683216 -0.456242831507885 -0.459725601214052 -0.35524251002904 -0.149759097365184 0.188069564133021 0.445794522389384 0.00696553941233412 0.588588080342233 0.181104024720687 -0.0417932364740047 -0.167172945896019 0.452760061801718 -0.181104024720687 0.752278256532085 1.04134814214395 0.964727208608275 0.53286376504356 -0.174138485308353 -0.195035103545355 -0.160207406483685 -0.114931400303513 0.0139310788246682 0.160207406483685 -0.156724636777518
MMP1006 0.0322844124127556 -0.338862242646055 -0.235640728344694 -0.186024840329614 0.00353855171347575 0.00829554093992318 3.13777948486129 4.93244251554239 -0.00169917960067135 -0.616802195043698 -0.51824977820476 -0.501257982198047 -0.497859622996704 -0.382315410151053 -0.41629900216448 -0.297356430117485 -0.154625343661092 0.181812217271834 0.50465634139939 0.365323614144339 0.436689157372536 0.0798614412315532 0.0254876940100702 -0.219194168486603 0.392510487755081 -0.0696663636275251 0.830898824728288 1.05519053201691 1.02800365840616 0.640590709453097 0.208999090882575 -0.0832598004328959 -0.188608935674519 -0.117243392446323 -0.0390811308154409 0.093454878036924 -0.181812217271834
MMP1007 0.0379264056461906 -0.282082038158649 -0.139270438023525 -0.0857098841198261 0.0216594239799662 -0.0851638527108154 2.19833257078244 5.20998448727613 0.183036131596833 -0.585385826278159 -0.463361738546937 -0.489745325083417 -0.483149428449297 -0.466659686863997 -0.456765841912817 -0.364423289035135 -0.229207408035673 0.281974581108634 0.578789929644039 0.436978152010457 0.413892513791036 0.136864855157992 0.0577140955485509 -0.196227924865073 0.384210978937496 -0.0939915270362114 0.928372451252404 1.24497548969017 1.17242062671485 0.690920172424081 -0.126971010206812 -0.0742038371338511 -0.0873956304020913 -0.206121769816253 -0.0511181989144308 0.0742038371338511 -0.153354596743292
MMP1008 0.143564783343434 -0.351962739023031 -0.0832761957822334 0.00560360551137844 0.204744401954435 0.0989757339988165 1.27152948454292 6.38601333796572 -0.105784577200425 -0.245571339929558 -0.313575710986974 -0.17001092764354 -0.120896659657628 -0.068004371057416 -0.00377802061430089 -0.00755604122860179 -0.0944505153575223 0.219125195629452 0.166232907029239 0.0264461443001062 -0.068004371057416 0.00377802061430089 0.0302241649144071 -0.0264461443001062 -0.657375586888355 0.249349360543859 0.865166720674904 1.02384358647554 1.03139962770414 0.714045896102868 0.396692164501594 0.264461443001062 -0.283351546072567 -0.188901030715044 -0.222903216243753 -0.0906724947432214 -0.173788948257841
MMP1598 0.0353616425486905 -0.48786245371419 -0.465271581932388 -0.700642478077582 -0.654987619311106 -1.58405215573807 2.90490854110522 5.70877918035877 -0.200382641109246 -0.00392907139429895 0.0903686420688755 -0.0117872141828968 0.145375641589061 0.00392907139429895 0.18466635553205 0.0825104992802776 -0.113943070434669 0.263247783418029 -0.0510779281258863 0.318254782938214 0.294680354572421 0.0825104992802776 -0.341829211304008 0.145375641589061 -0.247531497840833 -0.341829211304008 0.836892206985675 0.962622491603241 1.00191320554623 1.15907606131819 0.63258049448213 -0.263247783418029 -0.145375641589061 -0.664013065636521 -0.506850209864564 -0.546140923807553 -0.161091927166257
MMP1599 0.156476461833486 0.256921789922702 0.0943489543870603 0.0720699879985769 -0.399862259654376 -0.475483451350609 3.33472970289096 5.78159718488582 -0.477887572626592 -0.164934648959621 0.114185526202814 0.207225584590292 0.0634364034460079 0.114185526202814 -0.0888109648244111 -0.0718945905721423 -0.325640204356174 0.308723830103905 0.816215057671968 0.613218566644743 0.503262134004996 -0.198767397464158 -0.460971198374324 0.021145467815336 0.249516520220964 -0.164934648959621 0.24105833309483 0.537094882509533 0.570927631014071 0.714716812158355 0.367931139986845 -0.0888109648244111 -0.554011256761802 -0.359472952860711 -0.359472952860711 -0.351014765734577 -0.401763888491383
Unanno_55 -0.570499624110654 -1.38471599667769 -1.00771455294796 -0.238932665891376 -0.66697640642077 -1.21715219734863 3.12493284273743 4.51764869880555 0.0477310442483017 -0.297750799834644 -0.234109407503575 -0.0522768579862352 -0.156830573958706 0.0340936030345012 0.0795517404138362 0.120464064055238 0.0159103480827672 -0.275021731144976 0.706874036248658 0.502312418041651 0.211380338813907 0.452308466924383 0.0340936030345012 0.211380338813907 0.234109407503575 -0.193197083862174 0.338663123476045 0.602320320276188 0.515949859255452 0.520495672993385 0.134101505269038 -0.252292662455309 -0.288659172358777 -0.993260301738469 -0.906889840717732 -0.975077046786735 -0.211380338813907
[+] Show/hide bicluster #76 motif PSSM #1. bicluster 76 motif PSSM #1 Methanococcus maripaludis S2 10x4
POSITION A C G T
1 0 0.909091 0 0.090909
2 0.909091 0 0.090909 0
3 0.090909 0 0.818182 0.090909
4 0.181818 0 0.363636 0.454545
5 0 0 0 1
6 0 0 0.363636 0.636364
7 0.090909 0 0 0.909091
8 0 0 0 1
9 0.090909 0.727273 0.090909 0.090909
10 0.090909 0.545455 0 0.363636 [+] Show/hide bicluster #76 motif PSSM #2. bicluster 76 motif PSSM #2 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0 0.5 0.5 0
2 0 0 1 0
3 0 0 1 0
4 0 0 1 0
5 0 1 0 0
6 1 0 0 0 |