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bicluster 75
Methanococcus maripaludis S2
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bicluster 75 genes
Methanococcus maripaludis S2
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bicluster 75 short names
Methanococcus maripaludis S2
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bicluster 75 long names
Methanococcus maripaludis S2
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[+] Show/hide bicluster #75 rows (NCBI RefSeq gene IDs).
bicluster 75 NCBI RefSeq IDs
Methanococcus maripaludis S2
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bicluster 75 upstream sequences
Methanococcus maripaludis S2
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upstream
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bicluster 75 arrays
Methanococcus maripaludis S2
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bicluster 75 ratios
Methanococcus maripaludis S2
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GENES ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
MMP0008 0.16993839580469 -0.795267653849218 -0.269248725271258 -0.713270585570889 -4.69941101980222 0.809455978112684 -0.154182091069083 0 0.0642425379454511 0.115636568301812 0.141333583479992 0.770910455345413 -0.0128485075890902 -0.256970151781804 -0.334061197316346 -0.0642425379454511 -0.192727613836353 0.218424629014534 0.128485075890902 0.128485075890902 0.321212689727255 0.385455227672707 1.32339628167629 1.36194180444356 1.29769926649811 1.23345672855266 0.835152993290864 1.00218359194904 0.321212689727255 -0.449697765618158 -0.372606720083616 -0.60387985668724 -0.822304485701774 -0.706667917399962 -0.61672836427633 -0.693819409810872 -0.475394780796338 -0.539637318741789 -0.513940303563609
MMP0009 0.182416312614989 -0.524588703020462 -0.517863861258936 -0.235420522167813 -6.24854976712788 0.710429927377659 0.144497435736782 0.129604475430443 -0.108682889470979 -0.00443216732660693 -0.183147691002674 0.0998185548177652 0.0402467135924097 -0.972474587238634 0.233855197574815 0.114711515124104 0.293427038800171 0.263641118187493 0.0998185548177652 0.144497435736782 0.0104607929797319 0.0700326342050874 0.0104607929797319 -0.0937899291646403 0.531714403701593 0.635965125845965 0.635965125845965 2.66140772750805 -0.0491110482456236 -0.302291373453385 -0.391649135291418 -0.346970254372401 -0.317184333759723 -0.36186321467874 -0.406542095597757 -0.793759063562568 -0.644829460499179 -0.585257619273823 -0.689508341418196
MMP0113 0.320514064562648 -0.295122159275976 -0.99115920138146 -1.11083630179407 -4.53680488215179 0.55259124248148 -0.0818653692565155 0.245596107769547 -0.0102331711570644 0.358160990497255 0.378627332811384 0.388860503968449 0.337694648183127 0.0613990269423867 0.0102331711570645 0.225129765455418 0.194430251984224 0.306995134711933 0.317228305868998 0.624223440580931 -0.419560017439642 -0.0306995134711933 -0.0716321980994511 -0.286528792397804 0.562824413638544 0.869819548350478 0.542358071324415 0.849353206036349 -0.306995134711933 -0.296761963554869 -0.235362936612482 -0.450259530910835 -0.501425386696158 -0.450259530910835 -0.214896594298353 -0.501425386696158 -0.429793188596707 -0.4604927020679 -0.429793188596707
MMP0119 -0.15835246988529 -1.22108406228576 -1.67341672607388 -1.80238990849131 -5.37101850640906 0.726377536991571 0.0246229673556465 0.541705281824222 -0.0492459347112929 0.270852640912111 0.480147863435106 0.590951216535515 0.0123114836778232 -0.492459347112929 -1.23114836778232 -0.898738308481096 -0.812557922736333 0.0738689020669394 -0.0738689020669394 0.0369344510334697 -0.110803353100409 0.209295222522995 1.09572204732627 0.147737804133879 0.443213412401636 0.590951216535515 0.45552489607946 0.554016765502045 0.0123114836778232 -0.123114836778232 -0.123114836778232 -0.41859044504599 -0.430901928723813 -0.110803353100409 0.160049287811702 0.160049287811702 0.283164124589934 -0.147737804133879 -0.196983738845172
MMP0235 0.793977406347796 0.289410194008548 -0.208795794446253 -0.388669673305712 -5.00407915914301 0.319221181049222 0.0134882189175728 -0.579993413455628 -0.409142640499707 -0.0134882189175728 0.526040537785337 0.481079808060095 0.75084418641155 -0.714875602631356 -2.14462680789407 -1.9647838889931 -1.20045148366397 -1.11053002421349 -0.0404646567527183 0.535032683730386 -0.606969851290774 0.319221181049222 0.103409678368058 0.373174056719513 0.0404646567527183 -0.0224803648626213 0.283252597269028 0.103409678368058 -0.597977705345725 0.139378262148252 -0.400150494554658 -1.01161641881796 -1.51517659174067 -1.68602736469659 -1.64106663497135 -0.894718521532326 -0.579993413455628 0.121393970258155 0.0134882189175728
MMP0236 1.4059385517105 0.925275476644045 0.6932900594835 -0.0417771923270096 -5.05907115009343 0.81354210621184 -0.214516077757351 0.13356661445269 -0.206421131426885 0.222611024087817 -0.0607120974784956 -0.392604897027604 -0.0121424194956991 -1.16162479842188 -0.862111784194636 -0.821637052542306 -0.40069984335807 0.0283323121566313 0.505934145654129 0.190231238765953 0.0445222048175634 -0.109281775461292 0.562598769967392 0.675928018593917 0.886396623186034 0.85401683786417 0.821637052542306 0.724497696576713 0.0121424194956991 0.416889736019002 -0.109281775461292 -0.748782535568111 -0.619263394280654 -0.926871354838365 -0.845921891533704 -0.910681462177433 -0.837826945203238 -0.392604897027604 -0.489744252993197
MMP0237 0.917822003770544 0.242124336752411 0.591962886558984 -0.0966741733120043 -4.97114668260927 0.721653702632122 0.248438159922534 -0.350968194176278 0.0906996456860045 0.232664308498881 0.524480559836461 0.492932856989155 0.390402822735411 -0.327307417040799 -1.09233921108797 -1.28951235388363 -1.06079150824066 -0.429837451294543 0.642784445513858 0.556028262683766 -0.248438159922534 -0.00394346285591324 -0.232664308498881 -0.114360422821484 0.177455828516096 -0.0354911657032189 0.00394346285591324 0.335194342752625 -0.153795051380616 0.248438159922534 -0.193229679939749 -0.500819782700981 -0.879392216868652 -0.855731439733172 -0.753201405479428 -0.398289748447237 0.0433780914150457 0.216890457075228 -0.0828127199741778
MMP0239 -0.165734802999222 -0.371476469653541 -0.81216438569207 -1.38250490556609 -5.68487618511103 0.674323037810846 0.326285340876216 0.143565549985535 0.300182513606119 0.361089110569679 0.387191937839776 0.448098534803336 0.517706074190262 0.0913598954453404 -0.213173089372461 -0.195771204525729 -0.265378743912655 -0.221874031795827 -0.00435047121168288 -0.0391542409051459 0.19577120452573 0.944052252935184 0.00435047121168288 0.308883456029484 0.944052252935184 0.935351310511819 0.83094000143143 0.796136231737967 0.291481571182753 -0.0304532984817801 -0.0478551833285116 -0.361089110569679 -0.526407016613628 -0.66562209538748 -0.735229634774406 -0.796136231737966 -0.60471549842392 -0.247976859065924 -0.361089110569679
MMP0240 -0.297468167748761 -0.527820640898428 -0.918089715943147 -1.6365052653055 -5.03223924513422 -0.225239947595763 0.186489553607426 0.427501944555634 0.246742651344478 0.357206663862407 0.718725250284719 0.768936165065596 0.638387786635316 0.477712859336511 -0.14490248394636 -0.55663198514955 -0.466252338543971 -0.446167972631621 -0.456210155587796 -0.496378887412497 0.0860677240456725 0.507839408205037 0.327080114993881 0.969779824189103 1.06015947079468 0.929611092364401 0.799062713934122 0.909526726452051 0.206573919519777 -0.154944666902536 -0.134860300990185 -0.385914874894569 -0.5767163510619 -0.938234937484213 -0.958319303396563 -0.837813107922459 -0.606842899930426 -0.12481811803401 -0.245324313508114
MMP0241 -0.408470861812298 -0.740554004277276 -1.05412328803961 -1.41915233398745 -2.77532855929781 -0.352151914023073 0.0158896977970988 0.567952115527356 0.170854586984539 0.38393130961727 0.858511282753807 0.771343532585872 0.790714143734302 0.161169281410324 -0.429634358616793 -0.8848437206049 -0.710508220269029 -0.797675970436964 -0.642711081249524 -0.371522525171503 0.112742753539249 0.471099059785206 0.132113364687679 1.46868553392935 2.36941895233135 2.19508345199548 1.99169203493697 1.51711206180043 0.151483975836109 0.519525587656281 0.132113364687679 -0.264984163855137 -0.565228636655804 -0.787990664862749 -0.797675970436964 -0.817046581585395 -0.565228636655804 -0.235928247132492 -0.332781302874643
MMP0392 0.12057396502715 0.200956141792743 0.181363824918325 0.218669743350436 -4.99557034848567 1.23180611984002 -0.337348808921745 -1.02831191675718 0.0906025352860081 0.0638555762730236 0.0192773112513826 -0.0698792187918993 0.0192773112513826 0.08168688228168 -0.720721888107857 0.148554279814141 -0.426505338965027 -0.136746616324361 0.340240819407197 0.17975906532929 0.906384785182037 0.679035633571669 -0.0832526982983916 0.0906025352860081 1.11590263078375 1.60180571951964 1.35216743539845 1.20505916082703 0.946505223701514 -0.734095367614349 -1.01493843725069 -0.685059276090544 -0.0163853007659302 -0.792047112142483 -0.720721888107857 -0.471083603986668 -0.667227970081888 -0.118915310315704 0.00590383174489034
MMP0452 -0.000338826786272572 -0.300749013068037 -1.39195569960615 -0.752844133335162 -5.01278630702239 1.52428817290396 0.160107709846998 -0.405228337906338 -0.0119510872953219 0.000338826786272401 0.577964788621202 0.811473156171493 0.430485819642071 -0.429808166069526 -0.847665244843731 -0.896824901170108 -0.921404729333296 -0.429808166069526 0.77460341392671 1.31535963351686 0.147817795765403 -0.503547650559092 -0.184009884437641 0.074078311275838 0.995821867395406 1.16788066453773 1.06956135188497 1.88069568127019 0.233847194336563 0.0986581394390263 -0.552707306885469 -0.958274471578079 -1.08117361239402 -0.884534987088514 -0.577287135048657 -0.7001862758646 -0.270039283008801 -0.589577049130252 -0.601866963211846
MMP0453 -0.103792397589575 -0.414594549649237 -0.57258384265506 -0.958336537638939 -3.10860858401133 0.132550688002276 0.046571863352151 -0.0107473530812656 0.0752314715688592 0.103891079785568 0.483630888656952 0.591104419469608 0.677083244119733 -0.161210296218984 -0.641258733848848 -0.677083244119733 -0.340332847573411 -0.26868382703164 0.232859316760755 0.655588537957202 -0.0107473530812656 -0.168375198273161 -0.197034806489869 0.0895612756772134 0.433476574277713 0.512290496873661 0.791721676986566 1.19295619202048 0.0179122551354427 0.125385785948099 -0.197034806489869 -0.469301084548598 -0.5624448112529 -0.533785203036192 -0.483630888656952 -0.326003043465057 -0.0537367654063281 0.0107473530812656 -0.161210296218984
MMP0458 0.264806082280089 -0.606913562727414 -1.08069430931042 -0.990475479506196 -4.14641979785814 0.556461382447409 0.267276727002299 0.512645525561786 0.565224553824533 0.644093096218654 0.950804094418013 0.92451458028664 0.644093096218654 -0.854409209269643 -1.78330537524485 -1.68691049009648 -1.39772583465137 -0.898225066155266 -0.398724297659167 0.0219079284428114 0.714198467235651 -0.328618926642171 0.354908440773544 0.284803069756548 0.959567265795138 0.950804094418013 0.687908953104277 1.11730435058338 0.696672124481401 -0.451303325921914 -0.854409209269643 -1.33638363501149 -1.39772583465137 -1.29256777812587 -1.01214629405789 -0.959567265795138 -0.600277239333031 -0.687908953104277 -0.758014324121273
MMP0595 0.493567805786096 -0.13206256475576 -0.028153966168759 -0.478145267374512 -4.30416078394177 0.796133875318876 -0.350744294720903 -0.3952832527807 -0.150318983451816 -0.00556736975747466 0.016702109272424 0.139184243936866 0.00556736975747466 -0.88521179143847 -0.595708564049788 -0.573439085019889 -0.473226429385346 -0.172588462481714 -0.016702109272424 0.306205336661106 0.473226429385346 0.71819069871423 0.818403354348774 0.584573824534839 1.08563710270756 0.918616009983318 0.773864396288977 1.208119237372 0.473226429385346 -0.862942312408572 -0.907481270468369 -1.13017606076735 -1.11904132125241 -0.88521179143847 -0.684786480169383 -0.684786480169383 -0.40641799229565 -0.528900126960092 -0.261666378601309
MMP0635 -0.276708280896071 -0.55185230887275 -1.02811138966424 -1.97650687786589 -5.13788488710538 0.283019525740331 -0.57442184490413 -0.193336791284369 0.116294814781686 0.580742223880769 0.747466934839414 0.437835328773359 0.521197684252681 0.616468947657622 -0.371970410168632 -0.514877305276042 -0.121883343730664 -0.169518975433134 0.545015500103917 0.878464922021207 0.0329324593023633 -0.229063515061222 0.938009461649294 0.366381881219654 0.723649118988179 0.830829290318737 0.914191645798059 1.2833677914922 0.0924769989304509 -0.467241673573572 -0.66969310830907 -0.90787126682142 -0.967415806449508 -1.08650488570568 -0.895962358895803 -0.800691095490863 -0.43151494979672 -0.502968397350425 -0.514877305276042
MMP0636 0.668986575372073 -0.297511661317997 -0.654557919279763 -1.70461005101256 -5.80049512281575 0.995424069864895 -0.51087901998357 -0.226472142879315 0.0474011461840427 0.616214900392554 0.795285897087826 0.605681312351656 0.416076727615485 0.521412608024469 -0.721550780801538 -1.11129353831478 -0.679416428637944 -0.647815664515249 -0.110602674429433 0.289673671124705 0.19487137875662 -0.732084368842436 0.9638233057422 0.363408787410993 0.289673671124705 0.152737026593026 0.331808023288299 0.479278255860876 0.279140083083807 -0.089535498347636 -0.342341611329197 -0.437143903697282 -0.890088189455911 -1.09022636223298 -0.911155365537708 -0.732084368842436 -0.44767749173818 -0.279140083083807 -0.0684683222658393
MMP0723 0.21009075563466 -0.753870102133634 -0.931521174807281 -1.4840148983395 -4.46265728851755 0.760399365874982 0.174335464371337 0.545261984310353 0.47849521072133 0.47849521072133 0.738143774678641 0.634284349095717 0.248520768359141 0.248520768359141 -1.03488499062985 -1.48741534495545 -1.22776678099814 -0.715888183482301 -0.352380193942065 -0.166916933972557 0.24110223796036 -0.374635785138406 0.433984028328648 0.567517575506694 1.12390735541522 1.12390735541522 1.17583706820668 1.42064857136643 0.307869011549383 0.0630575083896327 -0.285613420353042 -0.871677321856687 -1.14616294661156 -1.02004792983229 -0.827166139464005 -0.752980835476202 -0.448821089126209 -0.47107668032255 -0.752980835476202
MMP0725 0.467465791102019 -0.555876823786786 -0.23205871764557 -1.53137667579688 -4.71749356576236 0.578459241529658 -0.00584302264171372 0.122703475475988 0.20450579245998 0.169447656609698 0.239563928310263 0.508342969829094 0.0409011584919961 -0.0525872037754235 -0.391482516994819 -0.601831332096513 -0.333052290577682 0.0876453396257057 0.00584302264171372 0.344738335861109 0.0409011584919961 0.0759592943422782 0.414854607561674 0.0292151132085686 0.648575513230223 1.09264523400047 0.578459241529658 1.12770336985075 0.0175290679251412 -0.765435966064497 -0.917354554749054 -1.34973823023587 -1.46659868307014 -1.20950568683474 -1.0225289622999 -1.13938941513418 -0.520029015112521 -0.730377830214215 -0.987470826449618
MMP0909 0.445457930360705 -0.279845508402767 -0.740474254560844 -1.6761320856673 -4.79535610049174 0.38753951943015 0.714525988949339 0.520756229234264 0.0242212199643844 0.0968848798575376 0.169548539750691 0.0968848798575376 -0.0363318299465765 0.544977449198649 -0.399650129412342 -0.617641109091802 -0.254322809626036 0 -0.121106099821922 0.169548539750691 0.254322809626036 0.193769759715075 0.460203179323303 0.121106099821922 0.484424399287688 0.823521478789069 1.00518062852195 0.932516968628799 0.266433419608228 -0.557088059180841 -0.472313789305496 -1.00518062852195 -1.18683977825484 -0.908295748664415 -0.7750790388603 -0.714525988949339 -0.27854402959042 -0.217990979679459 -0.423871349376727
MMP0934 -0.054743974885316 -0.0553327056606286 0.209009164792613 0.378917991486168 -4.67619345268457 -0.234704696820499 -0.195590011454849 0.109504534397227 0.500651388053735 0.26596327585983 0.234671527567309 0.27378621293296 0.438067891468693 -0.602382739257617 -0.688435047062048 -0.727549732427699 -0.555445116818836 -0.445923997795014 -0.125183577796677 -0.312934067551801 0.132973345616617 0.79010005975955 0.852683556344591 0.680578940735728 0.704047751955118 0.555411947565645 0.649287192443207 0.586703695858166 0.148619219762878 -0.054777144138506 -0.24252763389363 -0.359871689990582 -0.312934067551801 -0.398986375356233 -0.383340501209972 -0.297288193405541 -0.27381938218615 -0.27381938218615 0.054743974885316
MMP1141 -0.171668270166179 -0.709067194192631 -0.734717403900166 -0.334717549135488 -4.39247398465162 0.5839441078132 0.190675627041045 0.0953378135205225 -0.0834205868304572 -0.035751680070196 -0.0238344533801306 0.798454188234376 -0.333682347321829 -0.774619734854245 0.238344533801306 0.0357516800701959 -0.20259285373111 -0.119172266900653 0.119172266900653 0.309847893941698 0.238344533801306 0.119172266900653 1.00104704196549 0.572026881123135 1.4777361095681 1.35856384266745 1.00104704196549 1.90675627041045 0.274096213871502 0.476689067602612 -0.0595861334503266 -0.548192427743004 -0.524357974362874 -0.357516800701959 -0.154923946970849 -0.131089493590718 -0.131089493590718 -0.452854614222482 -1.07255040210588
MMP1162 -0.0975089045935005 -0.357958912219563 -0.302283536667974 -0.257612057570423 -3.71451386499569 -0.00242080638295439 0.225134993614758 0.394591440421565 0.709296270205636 0.840019814885173 1.10630851701016 1.28544818934878 1.25639851275333 0.370383376592021 -0.302600797869298 -0.898119168076078 -0.704454657439727 -0.554364661696555 0.0605201595738597 0.757712397864723 0.17671886595567 -0.196085317019305 1.02400109998971 1.31933947871014 1.14504141913743 1.02884271275561 1.19345754679651 1.16924948296697 0.25902628297612 -0.433324342548835 -0.718979495737453 -1.14019980637152 -1.60499463189876 -1.75992624040784 -1.69698527445103 -1.48395431275104 -1.03368432552152 -0.384908214889748 0.0508369340420422
MMP1220 0.473919078402625 -0.0467042458113975 -0.184867143336668 -0.446916406566494 -3.37106687009494 0.29016960598615 0.0780025822543413 0.35881187836997 0.277689192825455 0.265208779664761 0.215287127021982 0.265208779664761 0.171605680959551 0.071762375673994 -0.177845887539898 -0.209046920441635 -0.134164441477467 -0.0655221690936467 0.171605680959551 0.171605680959551 -0.115443821736425 0.134164441477467 0.577219108682126 0.321370638887886 0.552258282360737 0.583459315262473 0.577219108682126 0.858028404797755 -0.121684028316773 -0.396253117852054 -0.433694357334138 -0.508576836298306 -0.689542827128377 -0.633380967905252 -0.633380967905252 -0.751944892931851 -0.652101587646294 -0.589699521842821 -0.608420141583862
MMP1295 0.346518029695421 -0.756523104564705 -1.22112130800642 -1.75606715289126 -3.45301460464121 1.16004318497337 0.285807741225322 -0.117685540504544 0.218558860937011 0.504366602162333 0.689301022955189 1.07598208461298 0.571615482450644 -0.235371081009089 -0.0168122200720778 -0.100873320432467 -0.470742162018178 -0.134497760576622 0.672488802883111 1.39541426598246 0.0336244401441556 0.117685540504545 -0.1513099806487 0.117685540504545 1.07598208461298 1.24410428533376 0.874235443748044 1.83253198785648 -0.0672488802883111 -0.403493281729867 -0.268995521153244 -0.353056621513633 -0.285807741225322 -0.386681061657789 -0.437117721874022 -1.2104798451896 -1.09279430468506 -1.63078534699154 -0.823798783531811
[+] Show/hide bicluster #75 motif PSSM #1. bicluster 75 motif PSSM #1 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 1 0 0
2 0 0.9 0.1 0
3 0.2 0.6 0 0.2
4 0 0.8 0 0.2
5 0 0.4 0 0.6
6 0 1 0 0
7 0 0.5 0 0.5
8 0.2 0.2 0.6 0 [+] Show/hide bicluster #75 motif PSSM #2. bicluster 75 motif PSSM #2 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0.714286 0 0.071429 0.214286
2 1 0 0 0
3 0.857143 0 0 0.142857
4 0.928571 0 0.071429 0
5 0.071429 0.071429 0.142857 0.714286
6 0.928571 0.071429 0 0
7 0.357143 0.357143 0.285714 0
8 0 0.571429 0.285714 0.142857
9 0 0.642857 0.285714 0.071429
10 0 0.071429 0.928571 0
11 0.857143 0.142857 0 0 |