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bicluster 71
Methanococcus maripaludis S2
21x39
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bicluster 71 genes
Methanococcus maripaludis S2
21
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bicluster 71 short names
Methanococcus maripaludis S2
21
short_name
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bicluster 71 long names
Methanococcus maripaludis S2
21
long_name
[+] Show/hide bicluster #71 rows (NCBI RefSeq gene IDs).
bicluster 71 NCBI RefSeq IDs
Methanococcus maripaludis S2
40
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bicluster 71 upstream sequences
Methanococcus maripaludis S2
21
upstream
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bicluster 71 arrays
Methanococcus maripaludis S2
39
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bicluster 71 ratios
Methanococcus maripaludis S2
21x39
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0064 2.69261666156278 -0.175806586150147 -0.0136987731127763 -0.0561300648554605 -0.0410887771329723 -0.222760318290088 -0.308798971756758 3.47355921847534 2.26492344613318 1.57814684058758 0.338247759318119 0.0215902825096672 0.0133654129821749 0.0832768039658592 0.153188194949543 0.0832768039658592 0.0442086737102709 -0.015421630364048 2.4088586628643 -0.0133654129821749 -0.270392585716308 -0.225155803315101 -0.105895195166463 2.16622501180328 1.87012970881355 1.00857462580874 0.377315889573708 0.434889976266153 0.441058628411773 2.1415504032208 0.0174778477459211 -0.149075760185797 -0.20459362949637 -0.241605542370085 -0.206649846878243 -0.290954759535039 -0.260111498806943 -0.171694151386401 0.0524335432377632
MMP0065 2.31925984252183 -0.397722359959955 -0.203493092372419 -0.269186179370828 -0.406629765048957 -0.510970862025098 -0.542679861947587 2.95139603551109 2.17755353849809 1.60317065285521 0.77749525474357 0.0746319867858348 0.0330648042722053 0.150208682265161 0.212559456035605 0.206891203874656 0.170992273521976 0.0614060650769527 2.40239420754909 -0.133203925782313 -0.390164690412022 -0.265463142871134 -0.227674795131471 2.39294712061417 2.2096736340768 1.7165356960742 0.244679551614319 0.348597507898393 0.41283769905582 2.39672595538814 -0.0122812130153905 -0.12564625623438 -0.222006542970521 -0.242790134227336 -0.297583238449847 -0.350486925285376 -0.320256247093645 -0.31080916015873 0.0122812130153905
MMP0066 1.61466548511129 -0.399325872661933 0.775343455266073 0.648862610386612 0.601824279646317 0.107294639547208 0.0389322655379784 0.0311970733717965 2.07996693673476 0.836848133143702 -0.18403714131376 -0.0937547701032364 -0.371546681520233 0.0868099723178113 0.21181633245546 0.364601883734808 0.0104171966781374 -0.434049861589057 2.20497329687241 0.302098703665984 0.329877894807683 0.149313152386636 0.267374714738859 2.17024930794529 1.63549987846757 -0.19792673688461 -0.128478759030361 0.218761130240885 0.22570592802631 2.57999237728536 -0.253485119168009 -0.107644365674086 -0.385436277091083 -1.01741287556475 -1.18408802241495 -1.46187993383194 -1.2813151914109 -0.0868099723178115 -0.267374714738859
MMP0067 1.79650807897602 -0.230321548586669 -0.474154583522132 -0.459047133703373 -0.261628560274466 0.656568508124944 0.159117491525984 3.12032310284862 1.84014795133981 0.661871397517481 0.191530550929967 0.0800064326669482 -0.11879743032365 0.138192929152001 0.225472673879581 -0.0412154350102461 -0.269112546243371 -0.220623799172494 1.87893894899651 0.463067534526882 -0.11879743032365 -0.181832801515791 0.298205794485898 2.12623155905799 1.67043733659174 0.29335691977881 0.458218659819794 0.42427653687018 0.448520910405619 2.17472030612887 -0.526102905719023 0.0266688108889827 -0.201228300344143 -0.341845666849688 -0.113948555616563 -0.128495179737826 0.113948555616563 -0.0266688108889828 -0.409729912748917
MMP0068 2.5001373798489 -0.0623164850410993 -0.465549574467266 -0.723375077692244 -0.673926004586878 0.116358671948861 0.629983684719711 1.9957985104423 3.11333159265332 1.53797085081433 0.3514649756318 -0.461141989304135 -0.451171351697559 -0.221846686746313 -0.186949455123298 -0.251758599566041 -0.356450294435088 -0.361435613238376 2.0464733687497 0.371406250844952 -0.530936452550166 -0.695451973058668 0.102199035467403 2.41538696019301 2.16612102002861 1.04940960809211 0.780202392714563 0.700437291861956 0.565833684173182 2.51509333625877 -0.306597106402208 0.386362207254816 0.167008179910146 0.171993498713434 0.52096581494359 0.849996855960594 1.28870491064993 -0.0174486158115078 -0.266714555975905
MMP0205 1.89109834202097 -0.110063924667887 -0.184779261523567 -0.106917784903048 -0.191029263998909 -0.0293575132210997 0.130845859728998 3.35836968208885 2.57649641836191 1.57841673785084 0.762943114175127 0.200116226668886 0.0275159811669718 0.0125072641668054 0.0100058113334443 -0.0175101698335275 -0.0525305095005825 -0.0850493963342765 2.49895138052771 -0.0100058113334443 -0.250145283336107 -0.297672887169968 -0.0475276038338604 1.21570607701348 1.10063924667887 0.470273132671882 0.327690321170301 0.237638019169302 0.28016271733644 1.2082017185134 -0.0900523020009986 -0.130075547334776 -0.190110415335442 -0.252646736169468 -0.225130755002497 -0.172600245501914 -0.100058113334443 -0.267655453169635 -0.0875508491676376
MMP0206 1.41838350781504 -0.309359365902046 0.251270350721826 -0.239137042912381 -0.190992425407865 -0.177111307224704 -0.903146184341484 5.11405236475407 2.55075552639989 0.834686591018729 0.694599330987613 -0.414424810925383 -0.309359365902046 0.344381180909825 -0.040858784175742 -0.332707242573899 -0.321033304237973 -0.461120564269088 1.64018833619764 0.928078097706139 0.846360529354655 0.040858784175742 1.36001381613541 0.916404159370212 1.46507926115875 0.180946044206857 1.07983929607318 0.963099912713917 1.58181864451801 0.89305628269836 -0.0875545375194471 -0.496142379276867 -0.39107693425353 -0.694599330987613 -0.601207824300203 -0.122576352527226 0.192619982542784 -0.974773851049844 -0.169272105870931
MMP0504 0.73450077553876 -0.452000477254621 -0.428199431623765 0.200083949413028 -0.537987443445846 -0.338566149332497 -0.237282243989664 5.81083819930101 1.84755195077826 0.717550757641711 0.587600620431008 0.0113000119313655 -0.0395500417597794 0.344650363906649 -0.197750208798897 -0.118650125279338 -0.395500417597794 -0.135600143176386 1.3447014198325 0.491550519014401 0.310750328112552 -0.3277003460096 0.502850530945766 0.565000596568277 0.994401049960167 0.0904000954509243 0.519800548842815 0.423750447426207 0.768400811332856 0.497200524980083 0.1638501730048 -0.146900155107752 -0.20340021476458 -0.259900274421407 -0.0904000954509243 0 0.129950137210704 -0.525450554808497 0
MMP0505 1.09639354225241 -0.186801872194055 -0.191363669267036 -0.111982439359958 0.00890204775837925 -0.00422398238373598 0.0549681609902918 5.35250884178787 1.75667856133651 0.336442859910329 -0.0995944168433243 -0.17849640025589 -0.166038192348643 0.024987662229148 -0.166038192348643 -0.215871023977632 -0.224176495915797 -0.141121776534148 1.67777657792395 -0.0954416808742419 0.0291403981982304 -0.278162063513868 0.568996074178944 0.884604007829207 0.926131367520031 0.174486157116115 0.465177674951884 0.448566731075554 0.535774186426285 0.834771176200218 -0.0165396974616761 -0.0954416808742419 -0.19510734413222 -0.240787439792126 -0.215871023977632 -0.0539143211834178 0.0706677578890545 -0.220023759946714 -0.0580670571525002
MMP0506 1.22692876964347 -0.16064152771423 0.157010814999185 -0.265805592301598 -0.202449714558766 -0.120241249781343 -0.406464058972364 4.89622698364229 1.66461872921267 0.100109937561042 -0.1559852515486 -0.14667269921734 -0.132703870720451 0.0256095189109642 -0.0442346235734837 -0.1559852515486 -0.239798222529938 -0.0861411090641524 1.49699278725 0.0768285567328926 -0.426049269155132 -0.50054968780521 0.132703870720451 0.751988600749222 0.877708057221228 0.449330649983281 0.924270818877527 0.947552199705676 0.770613705411741 0.724050943755443 0.0721722805672628 -0.114078766057932 -0.239798222529938 -0.365517679001944 -0.346892574339424 -0.17461035621112 -0.0302657950765941 -0.188579184708009 -0.0162969665797045
MMP0507 1.26524666090179 -0.107780271113856 -0.036596596583612 -0.112666236655471 -0.0454837313046749 -0.180906734234965 -0.0795863463048479 4.78939962026609 1.92832963318921 0.485011220012353 0.0117152468602018 -0.105437221741816 -0.0515470861848878 0.00234304937204036 -0.0796636786493721 -0.110123320485897 -0.140582962322421 -0.100751122997735 1.90724218884085 0.0304596418365246 0.0281165924644843 -0.152298209182623 0.135896863578341 1.02625562495368 0.759147996541075 0.19681614725139 0.318654714597488 0.236647986576076 0.407690590735022 1.02156952620959 0.0164013456042825 -0.0562331849289685 -0.145269061066502 -0.19915919662343 -0.178071752275067 -0.0890358761375335 0.00702914811612107 -0.217903591599753 -0.0304596418365246
MMP0853 2.39483176959927 -0.206406806694584 -0.118372329313367 -0.201231380371941 -0.33281402351424 -0.355873307350874 -0.219312174338087 3.18830972087396 2.10381099245846 1.85253314083027 1.74484263298962 1.43715546773061 0.889728719540627 0.32819964294294 0.276918448733106 0.210252896260321 0.0974342689986854 0.0128202985524586 2.32432012756074 -0.00512811942098344 -0.130767045235078 -0.115382686972127 0.00512811942098344 2.3538068142314 2.19355308232567 2.07688836549829 0.361532419179333 0.156407642339995 0.229483344089009 2.30893576929779 -0.137177194511307 -0.16409982147147 -0.146151403498028 -0.146151403498028 -0.156407642339995 -0.115382686972127 -0.0884600600119644 -0.17948417973442 -0.138459224366553
MMP0854 2.5538742464394 -0.176109856606198 -0.0515376492937253 -0.158650346803009 -0.270099043403839 -0.265610608571745 -0.28214159969275 2.97061901543322 2.51898986589759 2.1521412189096 1.70877199524927 1.3227932040932 0.754515392041249 0.286389511222219 0.233500289110454 0.169358041017462 0.0680808071864215 -0.0208180980652694 2.5538742464394 0.000562651299061335 -0.000562651299061335 -0.0467000578220908 0.0624542941958081 2.38732946191724 2.28492692548808 2.0328591435086 0.325775102156513 0.113092911111328 0.13897487086815 2.37270052814165 -0.118719424101942 -0.137849568270027 -0.124345937092555 -0.111967608513206 -0.129972450083168 -0.0849603461582615 -0.0703314123826668 -0.152478502045622 -0.132223055279414
MMP0855 1.93209692102343 -0.529408702944466 -0.573977236313651 -0.564313612255074 -0.601674165062861 -0.638543347155806 -0.660278311231589 2.18379172449535 1.87877518115852 1.58604971128789 1.16056399114136 0.75357765013164 0.261711804847161 -0.175744101799653 -0.222536649028044 -0.290004972938746 -0.358561495622202 -0.409706837941606 1.96256648666052 1.46634784628503 1.4717888401488 1.42826088923867 1.42826088923867 1.84286462165766 1.76995530388319 1.53599256774124 -0.0821590073428719 -0.256270810983395 -0.202949071118485 1.83198263393013 -0.466293174124776 -0.511997522580414 -0.493498143443608 -0.474998764306802 -0.491321745898101 -0.458675782715503 -0.432559012169425 -0.509821125034907 -0.469557770443036
MMP0856 2.61223863531262 -0.116436993434477 -0.116883884943376 -0.145515240443595 -0.240438756583009 -0.231123565499884 -0.121951044445296 3.19783846030035 2.48187982744576 2.16420933448865 1.68707078530607 1.20360413865422 1.30991617613787 0.163264914707039 0.155671197743921 0.097452701026682 0.0240467703832072 -0.0442966822848555 2.57680128948473 0.00379685848155904 -0.094921462038976 -0.108843276471359 -0.0417654432971494 2.30089623982478 2.19331858284727 1.95538211800291 0.239202084338219 0.199967880028776 0.187311685090246 2.27684946944157 -0.0708746916557687 -0.0847965060881519 -0.0696090721619157 -0.0506247797541205 -0.0480935407664145 -0.0202499119016482 0.00126561949385301 -0.0784684086188868 -0.0721403111496218
MMP0857 2.4843300657174 -0.153989004306235 -0.168656865834465 -0.220219573903784 -0.268652909350843 -0.220525317803404 -0.242610773965606 3.04833814324718 2.44609355745619 2.1915817993425 1.72079479137632 1.24403332899433 0.665706141543499 0.172216206797231 0.139954152951833 0.0598964637799201 0.0061263740375906 -0.0416692612889245 2.4843300657174 -0.0297203524572957 -0.0655670789521821 -0.0930495692649283 0.0276344099345224 2.34572272327051 2.31226577854195 2.14020149136649 0.227181187422723 0.0969380811579694 0.0969380811579694 2.34572272327051 -0.0691517516016707 -0.103803587213394 -0.0882700057322768 -0.0428641521720874 -0.0440590430552503 -0.0106020983266897 0.0144906102197307 -0.0775159877838109 -0.0822955513164624
MMP0858 2.59999604019082 -0.0899918135724753 -0.146767892919185 -0.160439012532656 -0.277074024271683 -0.247022763573602 -0.196685326419729 3.44613230698049 2.33350865426302 1.92749907674999 1.86610931245249 1.03595227252035 0.595062147111019 0.240675780484527 0.229514005157708 0.149986355954125 0.0662730410029857 -0.0118593862847448 2.54837282930428 0.0118593862847448 -0.145800690206568 -0.141615024459011 -0.0286020492749728 2.08794959707301 2.03214072043892 1.83820487413544 0.39833585697584 0.313227320108848 0.289508547539358 2.04888338342915 -0.0565064875920194 -0.0927822574041799 -0.0788300382456566 -0.0690634848346903 -0.0174402739481541 -0.0383686026859391 -0.0146498301164495 -0.0565064875920194 -0.0481351560969054
MMP0859 2.39497790670714 -0.175746580204409 -0.311599793561271 -0.237844009837373 -0.298964835711006 -0.274545551377925 -0.385563047846107 3.01382129711707 2.32467927462538 2.18959562866434 1.88358981842608 1.31982235722135 0.751919682364746 0.214341907621848 0.116475184527628 0.0434197433446187 -0.0227436750852765 -0.0379061251421275 2.39773471580839 -0.0765014525595663 -0.119231993628874 -0.124745611831365 -0.0544469797496013 2.28746235175856 2.25300223799299 2.18408201046185 0.232261166779945 0.0379061251421274 0.0365277205915046 2.28194873355607 -0.0765014525595663 -0.11233997087576 -0.0971775208189086 -0.0268788887371449 0.0103380341296711 0.033770911490259 0.0475549569964872 -0.0434197433446187 -0.0985559253695314
MMP0860 2.39488235765191 -0.196301832594419 -0.206056203860851 -0.206689340367985 -0.218296842998787 -0.325296911302382 -0.425796778132728 2.99430106228293 2.3892737338635 2.20559130479301 1.91674717968979 1.28157053565214 0.68845857002757 0.165454401758153 0.0757164211435617 0.0238366511007509 0.00420646784130898 -0.0112172475768239 2.47340309068968 -0.128998347133475 -0.185084585017595 -0.279029033473496 -0.00841293568261793 2.246253827259 2.23643873562927 2.13548350743786 0.224344951536479 0.0729121092493557 0.100955228191416 2.22241717615824 -0.0168258713652359 -0.0687056414080466 -0.0673034854609437 -0.0168258713652359 0 0.011217247576824 0.0308474308362659 -0.0743142651964586 -0.0448689903072958
MMP1442 1.75830346613615 -0.233362220866952 0.608570590079187 0.535400313966659 0.285355503896438 -0.285191803764276 -0.878135332001897 3.37401748597476 1.24536868363651 1.08363249095644 1.02355904796099 0.566076674380231 0.154804641565206 -0.492140129155058 -0.422824618006458 -0.362751175011005 -0.515245299537925 -0.769402173749457 1.80451380690188 -0.0485208578040198 -0.00693155111485998 0.806370446362043 -0.390477379470445 2.03094447665397 2.14184929449173 1.56884106899664 -1.31468419478511 -0.344267038704712 0.0346577555742999 2.04942861296027 -0.709328730754004 -0.492140129155058 0.270330493479539 0.612287015145964 0.399719447623592 0.00693155111485998 -0.510624265461351 -0.469034958772192 -0.672360458141417
Unanno_6 2.45315737886443 -0.141458800140754 0.130814086432181 -0.249443487601503 -0.263758441673159 -0.368595544368938 -0.159870606488763 3.06365196199533 2.2563853205636 1.82121634547522 1.51975146128357 1.33307027776739 0.945832957906144 0.238210363632003 0.0767563670774748 0.0565746175081588 -0.00397063119978908 -0.044334130338421 2.33206688144853 -0.0140615059844471 -0.109924816438698 -0.17299278384281 0.0225179151099381 2.50991854952813 2.37747581797949 2.09493132400907 0.320198721257349 0.199108223841453 0.23694900428392 2.50991854952813 -0.0973112229578754 -0.127583847311849 -0.145242878185001 -0.152811034273494 -0.157856471665823 -0.0985725823059577 -0.0506409270788323 -0.191913174064044 -0.123799769267603
[+] Show/hide bicluster #71 motif PSSM #1. bicluster 71 motif PSSM #1 Methanococcus maripaludis S2 12x4
POSITION A C G T
1 0 1 0 0
2 0.571429 0.428571 0 0
3 0 0.428571 0.571429 0
4 0 0.285714 0.714286 0
5 0.428571 0 0.571429 0
6 0.571429 0 0 0.428571
7 0.571429 0 0.285714 0.142857
8 0.285714 0 0.428571 0.285714
9 0.142857 0 0.714286 0.142857
10 0.142857 0.142857 0.714286 0
11 0 0 0.714286 0.285714
12 0 0.142857 0.714286 0.142857 [+] Show/hide bicluster #71 motif PSSM #2. bicluster 71 motif PSSM #2 Methanococcus maripaludis S2 10x4
POSITION A C G T
1 0 0.8 0.2 0
2 0 0 1 0
3 0 0.6 0.2 0.2
4 0.2 0.6 0.2 0
5 0 0.2 0 0.8
6 0 0.4 0.6 0
7 0.2 0 0.6 0.2
8 1 0 0 0
9 0 0.2 0.2 0.6
10 0 1 0 0 |