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[+] Show/hide bicluster #69 rows and columns.
bicluster 69
Methanococcus maripaludis S2
17x40
[+] Show/hide bicluster #69 rows (genes).
bicluster 69 genes
Methanococcus maripaludis S2
17
[+] Show/hide bicluster #69 rows (short gene names).
bicluster 69 short names
Methanococcus maripaludis S2
17
short_name
[+] Show/hide bicluster #69 rows (long gene names).
bicluster 69 long names
Methanococcus maripaludis S2
17
long_name
[+] Show/hide bicluster #69 rows (NCBI RefSeq gene IDs).
bicluster 69 NCBI RefSeq IDs
Methanococcus maripaludis S2
32
[+] Show/hide bicluster #69 gene upstream sequences.
bicluster 69 upstream sequences
Methanococcus maripaludis S2
17
upstream
[+] Show/hide bicluster #69 columns (arrays; conditions).
bicluster 69 arrays
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #69 ratios.
bicluster 69 ratios
Methanococcus maripaludis S2
17x40
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0649m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
MMP0032 -0.574902174410285 -0.859389848345272 -0.429152418032095 1.33353597157025 -0.0414877857821854 -0.325975459717172 -0.029634132701561 -0.0651950919434343 -0.136317010427181 -0.148170663507805 -0.242999888152801 -0.468219296684665 -0.314121806636548 0.835682542184023 0.527487562087788 -0.491926602845914 0.0177804796209367 0.646024092894032 0.515633909007163 0.80012158294215 0.883097154506521 1.68914556398898 0.788267929861525 0.148170663507806 0.657877745974657 0.776414276780901 0.776414276780901 1.64173095166649 2.00919419716584 1.64173095166649 2.4714866673102 0.835682542184023 0.00592682654031223 0.0296341327015611 -0.337829112797797 -0.456365643604041 -0.254853541233425 -0.148170663507805 -0.871243501425896 -1.04904829763526
MMP0090 0.0463417332839966 -0.445270043519561 -1.06359545083157 2.53830487777099 -0.360509392346534 -0.106227438827452 -0.377461522581139 0.131102384457024 -0.0723231783582413 -0.292700871408112 -0.513078564457982 -0.750408387742458 -0.682599866804037 0.876996114779662 0.741379072902819 -0.360509392346534 0.571857770556765 1.02956528689111 0.9956610264219 1.38556002181783 0.690522682199003 2.14840588237507 -0.0553710481236359 -0.835169038915485 -0.343557262111928 0.402336468210711 0.605762031025976 1.63984197533691 2.31792718472112 1.9449803195598 2.80953896152468 0.605762031025976 0.0463417332839966 -0.530030694692588 -0.733456257507853 -0.919929690088513 -0.81821690868088 -0.902977559853907 -1.24202016454602 -1.12335525290378
MMP0517 -0.458545456336848 -1.00981378955596 -0.852009197037894 2.37654882879001 0.37623230539495 -0.316790742080505 -0.505797027755629 -0.190786551630422 -0.364042313499286 -0.490046503949368 -0.411293884918067 -0.883809599105877 -0.773555932462054 0.517987019651293 1.35276478138309 -0.946811694330918 0.691242781520157 0.454984924426252 0.659741733907636 2.14029097169611 0.439234400619992 2.23479411453367 1.17950901951423 0.250228114944868 0.218727067332347 0.706993305326417 0.659741733907636 1.8252804955709 2.25054463833993 1.33701425757683 2.18754254311489 0.313230210169909 -0.11203393259912 -0.58454964678693 -1.04131483716848 -1.38782636090621 -0.805056980074575 -0.600300170593191 -0.978312741943439 -1.19882007523108
MMP0518 -1.02573925803213 -0.274871304439982 -0.24811487578168 1.79001556793842 0.154196097612673 0.234646235497546 -0.435771580209728 -0.0335208907853637 0.0201125344712182 -0.00670417815707273 -0.261462948125837 -0.663713637550201 -0.301688017068273 0.851430625948237 -0.274871304439982 -0.328504729696564 0.770980488063365 0.824613913319947 0.93188076383311 0.757572131749219 0.462588292838019 2.31294146419009 0.315096373382419 -0.0737459597278001 0.543038430722892 1.01233090171798 1.20004789011602 1.74979049899598 2.40679995838911 1.9911409126506 2.63474201572959 0.382138154953146 0.167604453926818 -0.301688017068273 -0.663713637550201 -0.985514189089692 -0.529630074408746 -0.663713637550201 -0.78438884437751 -1.13300610854529
MMP0586 -0.544847610195699 -1.14194088164304 -0.619791772161412 1.85845280737985 0.00746366589309167 -0.649338932698984 -0.455283619478598 -0.261228306258212 -0.0223909976792753 -0.365719628761497 -0.634411600912801 -0.977740231995022 -0.649338932698984 0.858321577705554 0.664266264485168 -1.44048751736671 0.529920278409516 1.41063285379434 0.679193596271351 0.679193596271351 0.261228306258212 1.82859814380748 0.320937633402946 -0.410501624120047 -0.00746366589309178 0.485138283050965 0.679193596271351 1.60468816701473 2.15699944310352 1.84352547559367 2.41076408346864 0.0373183294654588 -0.141809651968744 -0.455283619478598 -0.709048259843718 -0.977740231995022 -0.306010301616763 -0.291082969830579 -0.947885568422655 -1.14194088164304
MMP0587 -0.43333041874762 -0.888694587601052 -0.736240896622267 1.49095042382656 0.359884585061583 -0.198303750952301 -0.286438751375546 -0.242371251163923 -0.301127918112753 -0.37457375179879 -0.60960041959411 -0.800559587177807 -0.653667919805732 0.37457375179879 0.462708752222035 -0.227682084426716 0.345195418324376 0.403952085273205 0.286438751375546 0.829937920652222 0.139547084003471 1.85817959225675 0.0220337501058112 -0.330506251587168 -0.212992917689508 0.359884585061583 0.580222086119695 1.69659875814746 1.90224709246837 1.74066625835909 1.9610037594172 0.00734458336860374 0.0661012503174336 -0.198303750952301 -0.198303750952301 -0.330506251587168 0.0954795837918485 -0.0220337501058112 -0.683046253280147 -1.00620792149871
MMP0741 -0.117054489597368 -0.338841943571327 -0.762319445840619 2.12546310058378 0.425092620116756 -0.0677683887142655 -0.462057195779083 -0.080089913935041 -0.314198893129776 -0.240269741805123 -0.437414145337532 -0.535986347103736 -0.375806519233654 0.659201599311492 0.16634059048047 -0.52366482188296 0.757773801077696 1.81742497006439 0.634558548869941 1.75581734396051 0.659201599311492 2.31028597889541 0.609915498428389 0.0677683887142655 0.437414145337532 0.794738376740023 1.04116888115553 1.82974649528517 2.38421513022007 1.9159971718306 2.95100529037574 0.535986347103736 0.0554468634934899 -0.338841943571327 -0.548307872324512 -0.548307872324512 -0.203305166142796 -0.301877367909001 -0.708487700194594 -0.954918204610105
MMP0774 -0.599905711118089 -1.0556489970066 0.242136053325566 1.57753443257147 0.336899932097187 -0.245438710982579 -0.713841532590217 -0.587246175398963 -0.410012675331208 -0.65054385399459 -0.675862925432841 -0.789798746904969 -0.523948496803336 0.666047860794445 0.349559467816312 -0.574586639679838 0.362219003535437 1.83072514695398 0.526792967884067 1.93200143270698 0.362219003535437 2.12189446849386 0.412857146411939 -0.321395925297331 0.0963687534338052 0.488814360726691 0.704026467951821 1.80540607551573 2.10923493277473 1.47625814681847 2.19785168280861 0.27360225350156 0.0837092177146798 -0.422672211050334 -0.827777354062345 -1.09362760416398 -0.549267568241587 -0.473310353926835 -1.01767038984922 -1.1062871398831
MMP0786 -0.536796585953069 -0.805194878929603 -0.06435304009219 1.61038975785921 -0.147619061137094 0.254978378327708 -0.657575817792509 -0.268398292976534 -0.0805194878929603 -0.187878805083574 -0.818614793578429 -0.738095305685469 -0.456277098060108 0.697835561738989 0 -1.38225120882915 0.496536842006588 1.1541126597991 0.362337695518321 1.12727283050144 0.456277098060108 2.49610412468177 0.402597439464801 -0.187878805083574 0.241558463678881 0.617316073846029 1.10043300120379 1.67748933110334 2.01298719732401 1.47619061137094 2.41558463678881 0.254978378327708 -0.241558463678881 -0.429437268762455 -0.89913428147139 -0.952813940066697 -0.442857183411282 -0.295238122274188 -1.12727283050144 -1.32857155023384
MMP0796 -0.216880081537339 -0.702691464180978 -1.00852978662509 1.65696382294527 0.650640244612016 0.2689313011063 -0.477136179382145 -0.0607264228304548 -0.164828861968377 -0.00867520326149356 -0.286281707629287 -0.685341057657991 -0.685341057657991 0.8067939033189 0.546537805474094 -0.945597155502797 0.407734553290197 0.685341057657991 0.633289838089029 1.11910122073267 0.876195529410849 2.2815784577728 0.945597155502797 -0.130128048922403 0.251580894583313 0.720041870703965 0.910896342456823 2.52448414909462 1.96927114035904 1.63961341642228 2.8194410599854 0.737392277226952 0.0433760163074678 -0.425084959813184 -0.667990651135003 -0.858845122887862 -0.494486585905132 -0.51183699242812 -1.11910122073267 -1.17115244030163
MMP0842 -0.494958052090926 -0.774169840565541 -0.298855619629743 1.3833757976474 0.19037997416495 -0.266512043338967 -0.291894933200296 -0.126906149101659 -0.0253745896563441 -0.190363373754981 -0.190363373754981 -0.380735047714946 -0.355352157853618 0.926483780143483 0.710729216322189 -0.558415276744247 0.355368758263587 0.48228320757023 0.723420661252853 0.469591762639566 0.164997084303621 1.70066192091401 0.304602978540929 -0.152289038962988 0.253837198818272 0.736112106183518 1.3833757976474 1.84026781515132 2.1321710485566 1.64989614119135 1.94179937459663 0.0761569697889708 0.0253911900663133 -0.533032386882919 -0.837627065218863 -1.1802960783468 -0.761478395634877 -0.698021170981555 -0.888392844941521 -1.06607307397082
MMP0957 -0.145838946960715 -0.39584857032194 -0.893550019494479 2.15980535737059 0.423627417362076 -0.0208341352801021 -0.312512029201532 0.00694471176003404 -0.118060099920579 0.00694471176003404 -0.256954335121259 -0.340290876241668 -0.46529568792228 0.743084158323642 1.18754571096582 -0.562521652562757 0.368069723281804 0.798641852403914 1.04865147576514 2.53481979241242 0.46529568792228 1.85423803992909 0.0347235588001701 -0.39584857032194 0.0763918293603744 0.645858193683165 0.895867817044391 1.46533418136718 1.90979573400936 1.2847716756063 2.6737140276131 0.201396641040987 -0.00694471176003404 -0.562521652562757 -0.82642069944405 -0.923646664084527 -0.618079346643029 -0.659747617203233 -0.868088970004255 -1.15976686392568
MMP1125 0.0789426313684052 -0.324541928958999 -0.265951251784384 1.51745280297045 0.675398068374133 0.201742280163702 0.0613998243976485 -0.0964854383391617 -0.219285087134459 -0.306999121988242 -0.570141226549592 -0.482427191695809 -0.482427191695809 0.482427191695809 0.710483682315646 -0.184199473192945 0.763112103227916 0.587684033520349 0.903454558993969 1.44728157508743 0.728026489286403 2.44722157242056 0.675398068374133 -0.412255963812782 -0.0263142104561349 0.412255963812782 0.938540172935483 1.92093736329786 2.72790648395266 2.20162227482996 2.62264964212812 0.587684033520349 -0.254370701075972 -0.728026489286402 -0.763112103227916 -0.728026489286402 -0.131571052280675 -0.394713156842025 -1.04379701476002 -1.09642543567229
MMP1285 -0.156523391420649 -0.284290828558306 0.0127850246407852 1.87178467313965 0.130953342139079 -0.459971054622584 -0.603709421402448 -0.364145476769341 -0.396087336053755 -0.635651280686862 -0.843273366035554 -1.06686638102645 -0.987011732815418 0.530226583194256 0.546197512836463 -0.827302436393347 0.498284723909842 0.466342864625428 0.849645176038398 1.68013351743317 0.466342864625428 2.15926140669938 0.354546357129978 -0.124581532136235 -0.0127850246407852 0.530226583194256 0.610081231405291 1.83984281385524 2.28702884383704 1.66416258779096 2.51062185882794 0.370517286772185 0.0670696235702504 -1.03492452174204 -1.22657567744852 -1.51405241100825 -1.09880824031087 -1.1626919588797 -1.3862849738706 -1.14672102923749
MMP1377 -0.160129238280896 -0.28467420138826 0.0248019729138884 1.81479803385016 0.942983292098613 0.231297788627962 -0.106752825520598 -0.0355842751735325 0.0889606879338314 -0.195713513454429 -0.391427026908858 -0.498179852429456 -0.355842751735325 0.569348402776521 1.06752825520598 -0.0533764127602988 -0.0711685503470651 0.355842751735326 0.569348402776521 1.26324176866041 0.106752825520598 1.74362948350309 0.569348402776521 0.14233710069413 0.0177921375867663 0.427011302082391 0.854022604164781 1.35220245659424 1.86817444661046 1.4233710069413 1.95713513454429 0.14233710069413 0.28467420138826 -0.533764127602988 -0.640516953123586 -0.996359704858911 -0.62272481553682 -0.604932677950053 -0.854022604164781 -1.04973611761921
MMP1631 -0.182514218780114 -0.533503101049564 0.0457853484485159 1.61454885843947 0.252711995234004 0.336949326978672 -0.238672439943226 0 -0.042118665872334 -0.196553774070892 -0.379067992851006 -0.547542656340342 -0.379067992851006 0.870452428028236 -0.575621766921898 -0.477344879886452 0.926610649191348 0.42118665872334 0.336949326978672 0.828333762155902 0.449265769304896 2.26036840181526 0.07019777645389 0 0.182514218780114 0.800254651574346 1.13720397855302 1.2775995314608 2.03573551716281 1.36183686320547 1.9795772959997 0.336949326978672 0.084237331744668 -0.112316442326224 -0.266751550524782 -0.393107548141784 -0.365028437560228 -0.35098888226945 -0.84237331744668 -1.02488753622679
Unanno_40 -0.581342376568358 -0.900510740174516 -1.27992453757293 1.57304407777321 -0.068393220772748 0.113988701287913 -0.216578532447036 0.0569943506439567 0.102589831159122 0.0113988701287914 -0.319168363606158 -0.718128818113854 -0.205179662318244 0.227977402575827 0.991701701204847 -0.524348025924402 -0.205179662318244 1.20828023365188 0.946106220689681 0.866314129788142 0.376162714250114 0.911909610303307 0.490151415538028 -0.125387571416705 -0.0113988701287914 0.364763844121323 0.672533337598689 2.09739210369761 1.63003842841716 1.59584181803079 2.70153222052355 0.102589831159122 0.364763844121323 -0.0797920909015394 -0.535746896053193 -0.93470735056089 -0.615538986954732 -0.558544636310776 -0.957505090818473 -1.23107797390946
[+] Show/hide bicluster #69 motif PSSM #1. bicluster 69 motif PSSM #1 Methanococcus maripaludis S2 15x4
POSITION A C G T
1 0 0.214286 0.571429 0.214286
2 0 0.071429 0.5 0.428571
3 0 0.071429 0.928571 0
4 0 0.071429 0.642857 0.285714
5 0.857143 0.142857 0 0
6 0.285714 0.071429 0.285714 0.357143
7 0.285714 0 0 0.714286
8 0.214286 0.285714 0.142857 0.357143
9 0.071429 0 0.142857 0.785714
10 0.025725 0.224275 0.295704 0.454296
11 0.311439 0.00999 0.152847 0.525725
12 0.097153 0.00999 0.50999 0.382868
13 0.097153 0.081418 0.795704 0.025725
14 1 0 0 0
15 0.714286 0.285714 0 0 [+] Show/hide bicluster #69 motif PSSM #2. bicluster 69 motif PSSM #2 Methanococcus maripaludis S2 9x4
POSITION A C G T
1 0 1 0 0
2 0 0 1 0
3 0 1 0 0
4 0 0.5 0.5 0
5 1 0 0 0
6 0 0 1 0
7 0 0 0.5 0.5
8 0 0.5 0.5 0
9 0 0 1 0 |