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bicluster 68
Methanococcus maripaludis S2
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bicluster 68 genes
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bicluster 68 short names
Methanococcus maripaludis S2
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bicluster 68 long names
Methanococcus maripaludis S2
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bicluster 68 NCBI RefSeq IDs
Methanococcus maripaludis S2
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bicluster 68 upstream sequences
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bicluster 68 arrays
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bicluster 68 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_HighH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0230 0.0109839363186898 0.230398905429665 1.12166444100036 1.43759997065234 1.43710399100787 1.28847707546666 0.8549956771636 0.0988554268682084 -0.790843414945667 -0.648052242802699 -0.922650650769945 -0.274598407967245 0.164759044780347 -0.142791172142968 -0.329518089560695 -0.241646599011176 -0.0109839363186898 0.351485962198074 0.0329518089560695 0.340502025879384 -0.263614471648556 -0.0768875542308287 -0.0988554268682083 0.61510043384663 -0.637068306484009 -0.713955860714838 0.0659036179121389 0.208694790055107 -0.285582344285935 -0.318534153242005 0.285582344285935 0.494277134341042 0.823795223901736 1.0764257592316 0.933634587088635 0.922650650769945 0.351485962198074
MMP0251 0.456794274112534 1.40518793087776 1.91053269861291 1.69034675838981 1.59477815605622 1.55266609778822 1.48167719564964 -0.239816993909081 -0.411114846701281 -0.10277871167532 0.719450981727241 0.159877995939387 -0.559572985787854 0.331175848731587 -0.114198568528134 -0.388275132995654 -0.13703828223376 -0.879328977666628 -0.194137566497827 -1.38180267919042 -0.548153128935041 -0.479633987818161 -0.947848118783508 -0.274076564467521 1.14198568528134 0.0913588548225066 0.354015562437214 0.422534703554094 0.776550265991308 -0.159877995939387 -0.513893558376601 -0.376855276142841 0.228397137056267 0.114198568528133 0.890748834519441 1.01636725990039 -0.0342595705584401
MMP0325 -0.143339135669073 0.123317109052939 0.589747983187339 0.764850951100759 0.848783450174683 0.888174663001625 1.30825474688804 -0.263559055907651 -0.0138715292582974 0.356035917629633 0.799924853895151 0.624218816623383 0.00462384308609914 0.402274348490625 -0.00462384308609914 0.00462384308609914 0.16183450801347 -0.282054428252047 -0.143339135669073 -0.707447992173168 0.0601099601192887 0.180329880357866 -0.0878530186358837 -0.670457247484375 -0.64271418896778 -0.208072938874461 -0.282054428252047 -0.309797486768642 -0.0508622739470906 -0.559485013417996 -0.0693576462914871 -0.346788231457435 -0.152586821841272 -0.300549800596444 0.254311369735452 0.661209561312177 -0.614971130451185
MMP0330 0.47111906692554 0.549265900019214 0.828526376846216 0.855737555351189 0.804774246456283 0.452873759213463 0.209817985990535 0.333230559532699 0.111076853177566 0.149379216342244 0.0957559079116951 -0.425156231127926 -0.00383023631646781 -0.210662997405729 -0.2259839426716 -0.59368662905251 -0.256625833203343 -0.639649464850123 -0.218323470038665 -0.180021106873987 -0.448137649026733 -0.271946778469214 -0.379193395330313 0.164700161608116 -0.363872450064441 0.00383023631646781 -0.0421325994811458 -0.0497930721140814 -0.356211977431506 -0.126397798443438 -0.141718743709309 -0.111076853177566 0.164700161608116 0.264286305836279 0.379193395330313 0.248965360570407 -0.0957559079116951
MMP0388 1.88590091640966 2.07742041708543 1.621964827427 1.96891229679994 1.79356404065203 1.72093965453058 1.7163336866977 -1.12442394261406 -0.41987982667234 -0.483929291757951 0.0640494650856111 -0.946508761820698 -1.03190804860151 -0.0284664289269383 -0.17079857356163 -0.149448751866426 -0.213498216952037 -0.775710188259068 -0.946508761820698 -1.37350519572477 -1.13865715707753 -0.960741976284167 -1.40197162465171 1.03190804860151 1.28810590894396 0.377180183281932 -0.298897503732852 -0.626261436392642 -0.348713754354994 -0.718777330405192 0.562211971307031 0.241964645878975 0.284664289269383 -0.128098930171222 0.0711660723173457 0.690310901478253 0.967858583515902
MMP0389 1.92592545267524 1.91200227214181 1.43422885293697 1.902756908596 1.91980304443438 1.76436537621879 1.77938909198074 -1.06213828951525 -0.268733784094219 -0.358311712125626 0.166359009201184 -1.17730991126991 -0.908576127175695 -0.0319921171540737 0.0767810811697771 0.0191952702924443 -0.13436689204711 -0.454288063587847 -0.895779280314065 -1.13891937068503 -1.03014617236117 -0.953365091191398 -1.79155856062813 1.01734932549955 1.26048941587051 0.345514865263997 -0.076781081169777 -0.358311712125626 -0.191952702924442 -0.607850225927401 0.499077027603551 -0.0639842343081475 -0.0639842343081475 -0.396702252710514 -0.0127968468616295 0.614248649358216 1.10052883010014
MMP0428 0.693706800912571 0.375438304349538 0.570056045260832 0.679636159927632 0.344652533386801 0.321186456219399 0.0741467942026081 0.357580825212665 0.178790412606333 -0.0643645485382798 -0.443400223263705 -0.88680044652741 -0.643645485382798 -0.722313266929584 -1.20862318921881 -1.05128762612524 -1.06559085913374 -0.843890747501891 -0.893952063031664 -1.02983277661248 -0.643645485382798 -0.307519509682892 -1.00837792709972 0.250306577648866 0.636493868878545 0.0858193980510397 -0.114425864068053 -0.350429208708412 -0.729464883433838 -1.33735228629537 0.0143032330085066 0.0357580825212665 0.193093645614839 0.278913043665879 0.307519509682892 0.264609810657372 0.193093645614839
MMP0516 0.556865595118462 0.483968126637098 1.39357342109258 1.04281059461823 0.684640717558131 0.227645198368626 -0.15995795865063 0.40146124299238 0.0259007253543471 -0.511539325748355 -0.4403123310239 0.291383160236405 0.271957616220644 0.304333522913578 0.0323759066929338 -0.187780258819016 -0.187780258819016 -0.297858341574991 -0.0971277200788016 -0.336709429606512 -0.110078082755975 -0.161879533464669 0.116553264094562 1.08783046488258 1.67707196669397 -0.0906525387402148 -0.0259007253543471 0.0388510880315206 0.103602901417388 -0.0712269947244545 -0.543915232441289 -0.453262693701074 -0.278432797559231 -0.0906525387402148 0.213680984173363 0.375560517638033 0.233106528189124
MMP0582 -0.316387321482669 1.26492341907756 0.715826411528442 1.1576438080024 1.55422121866805 1.61335067819775 1.19362414759264 0.544889275886818 0.166982197449186 -0.0263656101235557 -0.0790968303706672 -1.12493269860504 -0.298810248066965 -1.1688753821443 -1.01068172140297 -0.931584891032302 -1.05462440494223 -0.861276597369487 -1.1337212353129 -0.518523665763263 -1.01947025811082 -0.711871473336005 0.404272688561188 0.333964394898373 -0.843699523953783 -0.755814156875264 -0.360330005021928 -0.395484151853336 -0.333964394898373 0.703082936628153 0.114250977202075 0.0351541468314076 -0.0351541468314076 0.114250977202075 0.0439426835392596 0.0790968303706672 0.114250977202075
MMP0583 0.222871866742584 1.41512217250586 1.12632541541318 0.720424151237788 1.83596645842776 2.16059597681456 1.14584283157188 0.607832363843411 0.445743733485168 -0.0303916181921706 -0.050652696986951 -1.43853659442941 -0.466004812279949 -1.06370663672597 -0.982662321546848 -0.861095848778166 -1.15488149130248 -0.729398836612094 -1.43853659442941 -1.27644796407116 -1.24605634587899 -1.11435933371292 -0.121566472768682 0.354568878908657 -0.901618006367727 -0.476135351677339 -0.53691858806168 -0.212741327345194 -0.273524563729535 -0.111435933371292 0.283655103126925 0.283655103126925 0.344438339511266 0.384960497100827 0.263394024332145 0.445743733485168 0.303916181921706
MMP0872 0.599324774104255 1.82252241443335 2.66604329908638 2.45495806253892 2.34572514010749 1.38755889636899 1.0249252809527 -0.0435872562984913 0.272420351865571 -0.0217936281492457 0.207039467417834 0.326904422238685 0 -0.108968140746228 -0.740983357074352 -0.751880171148975 -0.381388492611799 -0.468563005208781 -0.697396100775861 -1.1441654778354 -0.523047075581895 -0.653808844477369 -0.108968140746228 0.228833095567079 -0.250626723716325 -0.57753114595501 -0.0544840703731141 0.523047075581895 -0.163452211119342 -0.653808844477369 0.0544840703731141 0 0.566634331880387 0.610221588178878 1.12237184968615 1.3838953874771 0.316007608164062
MMP0926 -0.106027696883355 0.837307207648648 1.10896074627178 0.794661860699042 1.31110501846906 1.42769262039908 1.32466996639122 -0.55959062243993 -0.176712828138925 0.188493683348187 0.541919339626037 -0.430001215138051 -1.32534621104194 -0.960139699554827 -0.983701409973351 -0.918906706322411 -0.795207726625163 -0.77164601620664 -0.365206511487112 -0.477124635975098 -0.182603255743556 -0.718632167764963 -0.948358844345565 0.98370140997335 0.530138484416776 0.129589407301878 -0.394658649510266 -0.70096088495107 -0.636166181300131 -0.865892857880734 -0.176712828138925 -0.170822400534294 0.0176712828138925 0.223836248975972 0.565481050044561 0.742193878183486 0.742193878183486
MMP0966 1.03725597177141 1.1527625717932 1.9438915028795 2.03707969725517 1.66060586875425 1.49493796764196 0.87368334921963 0.338586146225901 -0.080615749101405 -0.037620682913989 0.112862048741967 0.00537438327342698 -0.381581212413317 -0.456822578241295 -1.29522636889591 -1.02650720522456 -0.940517072849725 -0.790034341193769 -0.671797909178375 -0.757788041553207 -0.843778173928039 -0.747039275006353 -0.360083679319609 0.00537438327342698 -0.564310243709835 -0.575059010256689 0.252596013851069 0.284842313491631 0.016123149820281 -0.102113282195113 -0.822280640834331 -0.865275707021746 -0.510566410975565 -0.499817644428711 -0.005374383273427 0.639551609537813 0.413827512053879
MMP1032 0.993876455047299 1.72019287129826 1.2594125900427 1.59114809435727 1.41985552969137 1.06033841526326 0.958417695404472 0.0873737542898724 -0.0655303157174044 -0.163825789293511 0.29488642072832 0.709911753605214 0 -0.141982350721043 -0.840972385040022 -0.742676911463916 -0.40410361359066 -0.982954735761065 -0.655303157174044 -1.10309364790964 -0.415025332876894 -0.469633929308064 0 -0.196590947152213 2.40277824297149 -1.39798006863796 -1.71470992793875 -1.86761399794602 -0.840972385040022 -1.29968459506185 0.218434385724681 0.207512666438447 0.720833472891448 0.469633929308064 1.00479817433353 1.04848505147847 -0.305808140014554
MMP1033 -0.284444095076816 -0.310812579065871 0.34192256232521 0.0668648510700233 0.0515838666251725 -0.0983278600837939 -0.334260986231245 -0.345708977093361 -0.170666457046089 0.0831451970224539 0.258187717069725 -0.144410079038999 0.118153701031908 0.0393845670106361 -0.80957165521863 -0.853332285230447 -0.739554647199721 -0.827075907223357 -0.503247245135905 -0.83582803322572 -0.424478111114633 -0.301948347081543 -0.503247245135905 0.109401575029545 3.45271370793242 0.389469607105179 0.0568888190153632 -0.179418583048453 0.19692283505318 0.144410079038999 0.188170709050817 0.258187717069725 0.354461103095724 0.0218803150059089 0.00437606300118179 -0.0831451970224539 -0.179418583048453
MMP1034 0.233314693365281 0.376185854546842 0.755576568840633 0.520598300779255 0.146752437063738 0.455169108162627 -0.534647578354939 -0.331552458992767 0.290620056647981 0.151449888675708 0.11870396679988 -0.257874134772152 -0.749062962909585 -0.266060615241109 -0.0859580449240507 -0.315179498054853 -0.38067134180651 -0.397044302744425 -0.315179498054853 -0.331552458992767 -0.094144525393008 -0.200568771489452 -0.683571119157927 0.0368391621103075 1.41216788089512 -0.667198158220013 -0.249687654303195 -0.151449888675708 -0.167822849613623 -2.009780955129 0.503468548840869 0.478909107433997 0.347925419930682 0.0450256425792647 0.0450256425792647 0.0368391621103075 -0.192382291020495
MMP1075 0.88874043131287 1.12981449799305 1.89238683959553 1.49948629057274 1.43712112263142 0.997582268099688 0.723537072368353 -0.198165096171113 0.228190110742494 -0.0720600349713138 -0.138115067028351 -0.0540450262284853 -0.648540314741824 -0.0660550320570376 -0.612510297256167 -0.726605352627414 -0.432360209827883 -0.462385224399263 -0.534445259370577 -0.822685399255833 -0.492410238970644 -0.396330192342226 -0.324270157370912 0.318265154456636 0.750625364284519 -0.288240139885255 -0.900750437141422 -0.954795463369908 -0.936780454627079 -0.990825480855565 0.126105061199799 0.288240139885255 0.516430250627749 0.504420244799197 0.636530308913272 1.26705561491227 0.492410238970644
MMP1076 0.854649200871377 0.940516478213821 1.70693447681853 1.70457975892876 1.36768026553818 0.927347487080535 0.835775012034696 -0.0260740434164149 0.182518303914904 -0.055045202767987 -0.130370217082074 -0.00289711593515721 0.0898105939898735 -0.0898105939898735 -0.524377984263455 -0.512789520522826 -0.437464506208738 -0.51858375239314 -0.553349143615027 -0.564937607355656 -0.524377984263455 -0.420081810597795 -0.188312535785219 0.431670274338424 0.309991405061821 -0.547554911744712 -0.617085694188485 -0.692410708502573 -0.750353027205717 -0.535966448004083 0.0202798115461005 0.182518303914904 0.356345260024337 0.379522187505594 0.617085694188485 1.15594925812773 0.408493346857166
MMP1077 1.07437158168793 1.05555337426315 1.96338442789714 1.87409669817209 1.62709918562306 1.22239189025005 0.964005195611196 -0.011552382598795 0.109747634688552 -0.0577619129939748 0.0288809564969874 0.0519857216945773 0.121300017287347 -0.0924190607903596 -0.300361947568669 -0.369676243161438 -0.242600034574694 -0.456319112652401 -0.433214347454811 -0.52563340824517 -0.438990538754208 -0.265704799772284 -0.103971443389155 0.658485808131312 -0.173285738981924 -0.675814382029505 -0.623828660334927 -0.866428694909621 -0.606500086436735 -0.508304834346978 -0.0693142955927697 -0.0462095303951798 0.207942886778309 0.283033373670476 0.687366764628299 1.30541923366383 0.646933425532517
MMP1204 0.535206387135063 1.1744887312644 2.85385666308141 2.02251267348308 1.13752747891358 1.32839920317033 0.916139016861695 0.711509667603084 0.00629654573100075 -0.00629654573100066 -0.497427112749059 -0.207786009123025 0.157413643275019 0.0188896371930023 -0.635951118831075 -0.585578752983069 -0.51002020421106 -0.132227460351016 -0.182599826199022 0.0818550945030097 -0.144820551813017 -0.157413643275019 0.358903106667042 0.0188896371930023 -0.308530740819036 0.0440758201170052 0.0692620030410083 0.17000673473702 -0.270751466433032 0.258158374971031 -0.107041277427013 0.245565283509029 0.0440758201170052 0.623358027369074 0.447054746901053 0.686323484679081 -0.0314827286550037
MMP1205 0.756500802807244 1.08041671577271 1.36842746896855 1.58395179857431 1.41918284827518 1.00599533124034 0.844947455112281 0.390611525632499 -0.00494444969155062 -0.222500236119778 0.281833632418385 0.202722437353575 0.410389324398701 -0.0939445441394617 -0.519167217612815 -0.529056116995916 -0.410389324398701 -0.449944921931106 -0.697167406508637 -0.865278696021358 -0.667500708359333 -0.538945016379017 0.627945110826928 -0.0346111478408543 1.25094577196231 -0.519167217612815 -0.865278696021358 -1.06305668368338 -0.855389796638256 -1.06305668368338 0.410389324398701 0.529056116995916 0.924612092319965 0.983945488618573 1.29050136949471 1.53772385407224 0.24227803488598
MMP1266 0.428557177521608 1.392619978896 0.537193949578081 0.595992084990371 1.0764249468017 1.18608222887863 1.34027227184117 0.222520072943912 -0.173071167845265 -0.494489050986471 -0.222520072943912 0.148346715295941 0.0824148418310785 -0.206037104577696 -0.214278588760804 -0.30493491477499 -0.0329659367324314 -0.148346715295941 -0.0824148418310785 -0.337900851507422 -0.239003041310128 -0.255486009676343 0.173071167845265 0.0164829683662157 -0.164829683662157 -0.131863746929726 -0.11538077856351 0.0494489050986471 0 0.131863746929726 0.4203156933385 0.412074209155392 0.675801703014844 0.758216544845922 0.914804744324971 0.865355839226324 0.0741733576479706
MMP1674 -0.634918183127027 0.540267243515495 1.52529163493461 1.12188468596606 1.75039961927543 1.9148063095071 1.77375987592249 -1.18753215733018 -0.546735102137162 -0.305701347431531 0.252791498837612 0.141092929583784 -0.440915404949324 -0.464430893213288 -2.2810023616045 -2.33979108226441 -2.03408973483288 -1.44620252823378 -0.399763300487387 -0.164608417847748 -0.264549242969595 -1.34626170311194 -0.0587887206599099 1.18165328526419 0.987650507086486 -0.23515488263964 0.652554799325 0.35861119602545 0.382126684289414 0.164608417847747 -0.71134351998491 -0.858315321634684 -0.629039311061036 -0.617281566929054 0.152850673715766 0.464430893213288 0.693706903786937
MMP1675 -0.418383129044771 0.0857982623850293 1.04090357196027 0.809466192686565 1.55178926677088 1.67063292605906 1.53711136738493 -0.311428043424303 -0.0975178721833678 -0.0660604940597008 0.229638860302769 0.00943721343710011 -0.449840507168438 -0.588252970912573 -1.30548119213218 -1.31177266775691 -1.10415397214071 -0.607127397786773 -0.355468372797437 -0.0220201646865669 -0.122683774682301 -0.858786422776109 -0.531629690289972 0.921701179023443 0.865077898400843 0.30513656779957 -0.0031457378123667 0.30513656779957 0.0031457378123667 -0.525338214665239 -0.217055909053302 -0.223347384678036 -0.412091653420038 -0.26738771405117 0.204472957803836 0.607127397786773 0.506463787791039
MMP1676 -0.540359874308328 -0.154890328169873 0.918288914544759 0.687203615781396 1.53549914167463 1.75001299451963 1.41512739403648 -0.249916441867602 -0.182371457579061 0 0.0202634952865623 0.439042397875516 -0.37825191201583 -0.44579689630437 -1.31712719362655 -1.41169017163051 -1.19554622190718 -0.702467836600826 -0.141844467005936 -0.101317476432812 -0.195880454436769 -0.668695344456556 0.0067544984288541 0.817294309891346 -0.0742994827173951 0.081053981146249 0.378251912015829 0.249916441867601 0.276934435583018 0.0405269905731246 -0.141844467005936 -0.11482647329052 -0.256670940296456 -0.324215924584997 0.0135089968577082 0.391760908873538 0.405269905731246
[+] Show/hide bicluster #68 motif PSSM #1. bicluster 68 motif PSSM #1 Methanococcus maripaludis S2 10x4
POSITION A C G T
1 1 0 0 0
2 0.833333 0 0 0.166667
3 0.25 0 0.083333 0.666667
4 0.166667 0 0 0.833333
5 0 1 0 0
6 1 0 0 0
7 0 0.75 0.25 0
8 0 1 0 0
9 0.416667 0 0.5 0.083333
10 0.333333 0.416667 0.25 0 [+] Show/hide bicluster #68 motif PSSM #2. bicluster 68 motif PSSM #2 Methanococcus maripaludis S2 17x4
POSITION A C G T
1 0.2 0 0.8 0
2 0 0.4 0 0.6
3 0 0 0.2 0.8
4 0 0 0 1
5 0.2 0 0 0.8
6 0 0 0 1
7 0.6 0 0.4 0
8 0 0 0 1
9 0 0.2 0.8 0
10 0 0 0 1
11 1 0 0 0
12 0.2 0 0.8 0
13 0 0 1 0
14 0 0 0 1
15 0.6 0 0 0.4
16 1 0 0 0
17 0 0 0.8 0.2 |