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bicluster 65
Methanococcus maripaludis S2
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bicluster 65 genes
Methanococcus maripaludis S2
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bicluster 65 short names
Methanococcus maripaludis S2
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short_name
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bicluster 65 long names
Methanococcus maripaludis S2
22
long_name
[+] Show/hide bicluster #65 rows (NCBI RefSeq gene IDs).
bicluster 65 NCBI RefSeq IDs
Methanococcus maripaludis S2
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bicluster 65 upstream sequences
Methanococcus maripaludis S2
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upstream
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bicluster 65 arrays
Methanococcus maripaludis S2
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bicluster 65 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0070 0.0697190014922359 -1.92111260166623 0.22964085768258 -1.19937542491892 -1.84042728152572 -1.28752297119959 -1.21884717512669 0.116198335820393 -0.216903560198067 -0.0387327786067975 0.0697190014922359 0.348595007461179 0.364088118903898 0.294369117411662 0.286622561690303 0.209157004476707 -0.82113490646411 0.441553676117493 -0.867614240792268 -0.743669349250515 -0.426060564674774 0.185917337312629 0.0464793343281572 0.937333242284504 0.945079798005863 1.60353703432142 1.92889237461852 1.68874914725638 1.19296958108937 0.209157004476707 -0.0232396671640784 -1.23944891541752 -1.23170235969617 -0.952826353727222 -0.697190014922358 -0.759162460693234 -0.580991679101965 -0.565498567659246 -0.472539899002931 -0.046479334328157
MMP0241 -0.294040080577782 -1.32512528576166 -0.0158896977970988 -0.740554004277276 -1.05412328803961 -1.41915233398745 -2.77532855929781 -0.352151914023073 0.170854586984539 0.38393130961727 0.858511282753807 0.771343532585872 0.703546393566367 0.790714143734302 1.08127331096075 1.04253208866389 0.238651726004045 -0.206872330409847 -0.429634358616793 -0.8848437206049 -0.710508220269029 -0.371522525171503 -0.700822914694814 0.471099059785206 1.82704184017531 0.132113364687679 2.19508345199548 1.99169203493697 1.51711206180043 0.151483975836109 0.616378643398431 -0.264984163855137 -0.565228636655804 -0.787990664862749 -0.797675970436964 -0.817046581585395 -0.565228636655804 -0.235928247132492 -0.332781302874643 0.674490476843721
MMP0254 -0.680387853676998 -2.23241115066367 -0.721398772887861 -1.15271080725294 -1.78629846549584 -1.80229513881866 -2.8153177804818 -0.0248316734918612 -0.104293028665817 0.283081077807218 0.35260976358443 0.432071118758385 0.44200378815513 0.44200378815513 0.521465143329086 0.392340441171407 0.0645623510788392 0.620791837296531 0.0446970122853502 -0.0744950204755837 0.0645623510788392 -0.0148990040951167 -0.0446970122853502 1.574328099384 1.18695399291097 1.04789662135654 1.64385678516121 1.59419343817749 1.32601136446539 0.312879085997452 -0.00496633469837223 -0.888973911008632 -0.799579886437932 -0.73005120066072 -0.739983870057465 -0.73005120066072 -0.749916539454209 -0.660522514883509 -0.610859167899786 0.00496633469837225
MMP0276 0.58275073710275 -1.65718395052187 -1.09912462952991 -1.27011284841037 -1.09933101241743 -1.4220106536234 -2.19223157612765 0.4662005896822 -0.198820839717409 -0.11655014742055 -0.0342794551236912 0.11655014742055 -0.0685589102473824 -0.178253166643194 -0.226244403816362 -0.185109057667932 -0.0617030192226442 0.198820839717409 -0.205676730742147 -0.150829602544241 0.0137117820494765 0.397641679434818 0.11655014742055 1.84423468565459 2.15274978176781 1.83737879462985 2.00192017922357 1.54943137159084 1.04895132678495 0.603318410176965 0.15768549356898 -0.617030192226442 -0.617030192226442 -0.253667967915315 -0.0754148012721206 -0.198820839717409 0.0137117820494765 -0.287947423039006 -0.185109057667932 0.0822706922968589
MMP0570 1.03456393718959 -0.832334429965667 -0.786054177443186 -2.02657370502101 -1.54219693829998 -0.73142260115725 -2.50329510318491 1.21951391478773 0.0057796867999417 0.0288984339997092 -0.375679641996221 -0.109814049198895 -0.236967158797616 -0.329442147596686 -0.236967158797616 0.34100152119657 0.352560894796453 -0.202289037997965 -0.641545234793546 -0.537510872394593 -0.317882773996802 0.375679641996221 -0.433476509995639 1.08080143158913 0.976767069190174 0.838054585991569 1.06924205798924 0.861173333191337 1.1039201787889 1.12703892598866 0.768698344392267 -0.0288984339997093 -0.167610917198314 -0.00577968679994186 0.15605154359843 -0.15605154359843 -0.0982546755990117 -0.884292080391105 -0.930529574790639 0.953648321990407
MMP0642 0.532316242099514 -0.66314562591757 -0.665861611652472 -0.433780635116253 -0.587777026285195 -1.02518652438 -3.40941456116332 -0.17142387457442 0.279691584831948 0.234580038891312 0.288713894020076 0.279691584831948 0.252624657267566 0.270669275643821 0.550360860475769 0.324803130772585 0.315780821584458 -0.911253228000864 -0.378936985901349 -0.324803130772585 -0.13533463782191 0.0360892367525095 -0.30675851239633 1.17290019445656 1.56988179873416 1.78641721924922 1.47063639766476 1.29019021390221 1.56085948954603 1.42552485172412 0.460137768594496 -0.270669275643821 -0.099245401069401 -0.0812007826931462 -0.13533463782191 0.162401565386293 -0.0360892367525094 -0.099245401069401 0.369914676713222 0.784940899367081
MMP0643 0.754852399566702 -1.91793573903849 -1.64951650046314 -1.11859556289012 -1.96574939529265 -2.14067162491389 -3.10238887131155 -0.754852399566702 0.550413208017387 0.125808733261117 0.235891374864594 0.0629043666305585 0.204439191549315 0.330247924810432 0.251617466522234 0.0157260916576396 -0.0629043666305585 -1.30526560758409 -0.896387224485458 -1.24236124095353 -0.896387224485458 -0.0943565499458378 -0.927839407800738 2.21737892372719 2.21737892372719 -0.0314521833152793 0.40887838309863 0.84920894951254 1.10082641603477 0.503234933044468 0 0.345974016468072 0.377426199783351 0.220165283206955 -0.40887838309863 -0.42460447475627 -0.802030674539621 -0.864935041170179 -0.283069649837513 0.298795741495153
MMP0753 -0.23358216675168 -1.64491579406897 -0.0361426185632875 -0.274745932877521 -0.636064804826493 -0.287294290023859 -1.8336947613859 1.07826110728021 0.121964141163504 0.305867403878255 0.440729796535738 0.661413711793439 0.526551319135955 0.416209361507105 0.538811536650272 0.379428708964155 0.685934146822073 -1.43508348315472 -1.36152217806882 -1.39830283061177 -1.37378239558313 0.0361426185632875 -0.123240209122829 1.17634284739474 1.53188915530992 1.04148045473726 1.40928698016676 0.91887827959409 1.18860306490906 1.22538371745201 0.452990014050055 -1.04275652269658 -1.09179739275385 -0.846593042467514 -0.60138869218118 -0.736251084838664 -0.368444559409163 -0.589128474666864 -0.552347822123914 0.649153494279122
MMP0764 -0.30595487485297 -1.07259411425731 -0.455412217390735 -1.55557082841456 -1.53208998196768 -1.33786694941791 -1.99067495141064 0.494234797839413 0.440440534129001 0.890967492703704 1.15993881125577 0.890967492703704 0.803551814174284 0.662341871934452 0.52113192969462 0.420267685237596 -0.265609177070161 -1.47598011055444 -1.24735448978519 -0.74303326750007 -0.359749138563382 0.171469215576939 -1.25407877274899 0.507683363767016 0.413543402273795 1.28097590460419 1.90633422023774 1.63063861872187 1.38184014906122 0.500959080803215 1.15993881125577 -0.669066154898253 -0.628720457115444 -0.48078623191181 -0.198366347432145 -0.265609177070161 -0.319403440780573 -1.01872886901593 -1.01200458605213 1.3145973194232
MMP0765 0.406310844588046 -1.26669763291333 -0.394140302800924 -1.00215669717005 -1.40545129431344 -1.89028705604716 -2.64354030534487 0.0599475016605313 0.739352520479886 1.07683475205028 1.35658975979943 1.30330309165674 1.12568086451442 1.00578586119336 0.481800291123529 0.819282522693928 -0.339702509409677 -1.32106531437097 -1.0013453055148 -0.45959751273074 -0.122115281160341 0.0821502800533207 -1.25889753487116 0.566170849016129 0.797079744301138 1.37879253819222 1.64078532322713 1.34326809276376 0.890331413550854 0.495121958159203 1.32106531437097 -0.16652083794592 -0.335261953731119 -0.242010284481404 -0.117674725481784 -0.135436948196015 -0.353024176445351 -0.788198632944022 -0.810401411336812 1.41875753929924
MMP0770 0.214697621811594 -1.3159498261689 -0.51683054475823 -0.895852067829319 -0.612627192293085 -1.24112216099786 -2.06350840498446 1.16890927430757 -0.00477105826247985 0.262408204436392 0.138360689611916 0.33874513663607 0.195613388761674 0.166987039186795 0.33874513663607 0.520045350610305 0.958982710758452 -0.233781854861513 -0.663177098484701 -0.491419001035426 -0.33874513663607 -0.252866087911433 0.00477105826247987 2.24716844162801 1.62693086750563 1.10211445863285 1.53150970225604 1.38837795438164 1.28341467260708 2.10403669375362 0.796766729834137 -0.224239738336553 -0.147902806136876 0.0429395243623188 0.128818573086956 -0.310118787061191 -0.281492437486312 -0.70134556458454 -0.262408204436392 0.854019428983895
MMP0915 0.217612404212302 -1.84978490785459 -0.850057880411627 -1.19578525071671 -0.996101876164252 -1.09513434739403 -1.91413675135994 -0.335379117080136 0.350739992671593 0.320018241488679 0.468506705539427 0.263695030986672 0.0281616052510035 0.299537074033404 0.258574739122853 -0.0281616052510038 0.340499408943955 -0.719401006866552 -0.719401006866552 -0.560671959088167 0.186890653029389 -0.0998456913444681 -1.09318231292533 0.883250346508756 0.719401006866552 1.50280566203084 1.54376799694139 1.84074492504288 1.71273762844741 1.09318231292533 0.483867581130883 -0.622115461453993 -0.704040131275095 -0.581153126543442 -0.606754585862537 -0.314897949624861 -0.207371820484665 -0.309777657761042 -0.202251528620846 0.442905246220332
MMP0916 -0.00894109939227815 -1.57340554865305 -0.777517430922146 -0.990418177691694 -1.11395982020878 -1.29765736720021 -2.18277000328496 -0.277174081160622 0.33529122721043 0.102822643011198 0.317409028425874 0.24140968359151 0.259291882376066 0.312938478729735 0.268232981768344 0.00894109939227815 0.259291882376066 -0.187763087237841 -0.719758501078391 -0.683994103509278 -0.0312938478729735 -0.169880888453285 -0.634818056851748 0.934344886493066 0.48281936718302 1.1668134706923 1.66751503665987 1.89551307116297 1.39481150519539 1.15340182160388 0.0670582454420859 -0.616935858067192 -0.657170805332444 -0.630347507155609 -0.733170150166808 -0.371055624779543 -0.375526174475682 -0.353173425994987 -0.259291882376066 0.0223527484806954
MMP0991 -0.0382839733773239 -0.442326252138313 -1.40674523981599 -1.18067051604703 -1.28957822400727 -1.99834261835116 -3.66345875045736 1.00814463226953 0.0510452978364319 0.255226489182159 0.216942515804835 0.344555760395915 0.446646356068779 0.242465164723051 0.433885031609671 0.357317084855023 0.165897217968404 -0.918815361055774 -0.0893292712137558 -0.204181191345727 -0.472169004986995 0.012761324459108 -0.906054036596666 1.86315337102976 2.16942515804835 0.791202116464694 2.15666383358925 0.88053138767845 1.1229965524015 0.280749138100375 -0.382839733773239 -0.472169004986995 -0.497691653905211 -0.140374569050188 -0.102090595672864 -0.319033111477699 -0.395601058232347 -0.714634169710046 -0.75291814308737 -0.382839733773239
MMP1029 0.233212674512493 -0.291543312616491 0.396007873589734 0.0938318890210956 -1.40375408768757 -1.67560790917524 -2.09981938236701 0.352299997667808 -0.203440843723664 0.13397323854973 0.451539433630571 0.362223941264085 0.40191971564919 0.431691546438019 0.540854925997058 0.659942249152373 0.21336478731994 -0.66986619274865 -0.957660557040662 -0.788953515903965 -0.630170418363544 -0.0645056333757959 -1.12636759817736 1.68210843956883 1.85081548070553 2.01952252184222 1.77142393193532 1.74165210114649 1.31492252650661 0.0645056333757959 0.74925774151886 -1.0668239365997 -0.868345064674175 -0.521007038804505 -0.253060561705045 -0.322528166878979 -0.272908448897598 -0.491235208015676 -0.0645056333757959 0.679790136344926
MMP1053 -0.213075883472719 -0.735193230848524 -0.989695355996127 -0.757001590137134 -0.689723519158273 -0.45489167885922 -1.51601800688831 -0.459296904374528 0.104170431919996 0 -0.104170431919996 0.108905451552723 0.553997297029069 0.74813310197088 0.814423376829059 0.776543219767242 -0.108905451552723 -0.440356825843619 -0.0331451374290896 0.0994354122872688 0.421416747312711 1.09852455479268 -0.738663062705426 0.857038553523603 1.42997592908358 2.08814365803265 0.653432709316338 0.989619103239961 0.918593808749055 0.74813310197088 -0.0757603141236333 -1.91294793162174 -1.44418098798176 -1.02276424066905 -0.852303533890876 -0.82862843572724 -1.23110510450904 -1.23110510450904 -0.752868121603607 0
MMP1054 -0.0667640945593614 -0.80385750066364 -1.08889013520551 -0.77349516953656 -0.673794759099387 -0.465924068741278 -1.40299308688542 -0.677178673387809 0.0286131833825835 -0.0858395501477504 -0.119221597427431 0.128759325221626 0.524575028680697 0.758249359638463 0.853626637580407 0.76301822353556 -0.0810706862506531 -0.486424117503919 0.0810706862506533 0.0619952306622643 0.457810934121336 1.15406506309753 -0.715329584564587 1.02053687397881 1.58326281383629 1.98384738119246 0.734405040152976 1.0348434656701 0.939466187728158 0.782093679123949 -0.119221597427431 -1.71202213905791 -1.45450348861466 -1.03007460177301 -0.939466187728158 -0.891777548757185 -1.25898006883367 -1.24944234103948 -0.753480495741365 -0.0286131833825835
MMP1636 -0.491189522510752 -1.58656499995634 -0.513803068188732 -0.806385088784899 -1.27093035666068 -0.755389893116318 -2.06612940467064 0.7851297092101 0.058014510532766 0.197249335811405 0.274602016521759 0.467983718297646 0.406101573729362 0.305543088805901 0.166308263527263 0.0502792424617306 0.406101573729362 -0.274602016521759 -0.808335513423207 -0.692306492357675 -0.607218543576285 0.0966908508879434 -0.0966908508879434 0.70004176042871 0.328748893019008 0.537601130936965 1.34206901032465 1.1332167724067 1.1564225766198 0.220455140024511 0.058014510532766 -0.537601130936965 -0.607218543576285 -0.37516050144522 -0.189514067740369 -0.382895769516256 -0.243660944237617 -0.607218543576285 -0.653630152002497 0.00386763403551774
MMP1684 -0.447652492202419 -1.58905751571037 -1.35581851709245 -1.51337431947958 -1.73227582079306 -1.61514706211897 -3.2106052276786 0.0780789230585616 0.135336799968173 0.296699907622534 0.176978892266073 0.109310492281986 0.187389415340548 0.18218415380331 0.104105230744749 -0.187389415340547 0.327931476845958 -0.18218415380331 -0.171773630728835 -0.0312315692234243 0.150952584579886 0.572578769096118 -0.520526153723743 0.796405015197327 0.114515753819224 0.81202079980904 1.71773630728835 1.89992046109166 2.06128356874602 0.77037870751114 0.0312315692234246 -0.744352399824952 -0.91092076901655 -1.11913123050605 -1.28049433816041 -1.32213643045831 -1.25967329201146 -0.916126030553788 -0.812020799809039 0.18218415380331
Unanno_32 -0.436987099714454 -1.1445001870406 -0.070417947965475 -0.542324605072113 -0.964916720232468 -1.48155558779165 -0.944623572420415 0.205725960680123 -0.205030506489344 0.10907738016966 0.123574667246229 0.0945800930930906 0.142904383348322 0.167066528475938 0.176731386526984 0.070417947965475 0.321704257292678 -0.494976248020731 -0.325841232127422 -0.345170948229514 -0.12287921305545 0.234720534833261 -0.929894860317813 1.49115208146928 1.20603876896341 1.41383321706091 1.84391940033246 1.76176810689857 1.51531422659689 0.601985140773019 0.225055676782215 -1.69825107537599 -1.93987252665215 -1.71274836245256 -1.60643492389105 -1.83355908809064 -1.54844577558477 -1.24883517600234 -0.702770696118226 0.384525834624479
Unanno_34 0.226214158982115 -0.947788940117055 -0.136714881393996 -1.17887157009821 -1.49095408785015 -1.67472705358282 -1.94913207918722 -0.586370912098376 -0.238120167349594 0.044647531378049 0.285744200819514 0.357180251024392 0.369086259391871 0.532793874444718 0.577441405822767 0.372062761483741 -0.470287330515449 -0.508981857709758 -0.44052230959675 -0.255979179900814 -0.0446475313780488 0.589347414190246 -0.702454493681303 1.00605770705204 1.01498721332765 1.20548334720732 1.56564010032358 1.83054878650001 1.80078376558131 1.07749375725691 1.18167133047236 -0.517911363985368 -1.0685642509813 -1.30370791623903 -1.41383849363822 -1.19655384093171 -1.17571832628862 -1.00308120496017 -1.1280942928187 1.20845984929919
Unanno_44 -0.0782555208367864 -1.54488753757903 -0.848008383778643 -1.13810910284408 -1.42703195663601 -1.84593545367719 -1.45051993231797 -0.225560030647208 0.690489889736349 1.04494136646768 1.15541974882549 1.0219250368098 0.93446298410986 0.888430324794103 0.773348676504711 0.718109485325803 -0.391277604183931 -1.47764836403579 -0.823984601752044 -0.368261274526053 -0.0506359252473323 0.165717573536724 -1.42701243878846 0.874620526999376 0.773348676504711 1.21986547186755 1.77686064958821 1.62034960791463 1.34415365202009 0.506359252473323 1.00351197308349 -0.598424571104836 -0.699696421599501 -0.561598443652231 -0.487946188747021 -0.529375582131201 -0.667473560078471 -1.0587511642624 -1.06335443019398 1.10478382357816
[+] Show/hide bicluster #65 motif PSSM #1. bicluster 65 motif PSSM #1 Methanococcus maripaludis S2 12x4
POSITION A C G T
1 0 0.727273 0.272727 0
2 0.272727 0.727273 0 0
3 0.090909 0.272727 0 0.636364
4 0 0.727273 0.272727 0
5 0 0.818182 0 0.181818
6 0.454545 0 0 0.545455
7 0.090909 0 0.909091 0
8 0.363636 0 0.363636 0.272727
9 0.818182 0 0.181818 0
10 0 0.363636 0.545455 0.090909
11 1 0 0 0
12 0.181818 0.181818 0.636364 0 [+] Show/hide bicluster #65 motif PSSM #2. bicluster 65 motif PSSM #2 Methanococcus maripaludis S2 14x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 0 1 0 0
4 1 0 0 0
5 0.666667 0 0 0.333333
6 1 0 0 0
7 0.333333 0.333333 0 0.333333
8 0.666667 0 0 0.333333
9 1 0 0 0
10 1 0 0 0
11 0.833333 0 0.166667 0
12 0 0.333333 0.666667 0
13 0.833333 0 0.166667 0
14 0 0.166667 0 0.833333 |