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bicluster 62
Methanococcus maripaludis S2
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bicluster 62 genes
Methanococcus maripaludis S2
24
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bicluster 62 short names
Methanococcus maripaludis S2
24
short_name
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bicluster 62 long names
Methanococcus maripaludis S2
24
long_name
[+] Show/hide bicluster #62 rows (NCBI RefSeq gene IDs).
bicluster 62 NCBI RefSeq IDs
Methanococcus maripaludis S2
44
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bicluster 62 upstream sequences
Methanococcus maripaludis S2
24
upstream
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bicluster 62 arrays
Methanococcus maripaludis S2
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bicluster 62 ratios
Methanococcus maripaludis S2
24x38
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
MMP0324 0.113372716453262 0.155887485123235 0.992281464492527 -2.81988186574217 2.94592983612557 -0.31177497024647 -0.226745432906523 -0.368461328473101 -0.226745432906523 -0.439319276256389 -0.722751067389544 -0.708579477832886 -0.269260201576497 0.226745432906523 0.155887485123235 0.49600563448302 0.623549940492939 -0.099201126896604 0.722751067389544 0.722751067389544 0.765265836059517 1.67224756768561 -0.552691992709651 0.736922656946201 -0.836123783842805 -0.467662455369705 0.255088612019839 0.765265836059517 1.04869762719267 2.08322366482868 1.34630100788248 -0.382632918029758 -0.396804507586416 0.113372716453262 -0.0283431791133155 -0.0425147686699731 -1.03452603763601 -1.36047259743914
MMP0343 -0.878167651973333 -1.26619521912434 0.450234737563913 -0.850022031545027 3.5379603250049 -0.490140084822325 0 -0.306337553013954 0.0204225035342633 -0.183802531808372 -0.673942616630697 -0.776055134302015 -0.551407595425116 0.245070042411163 -1.32746272972713 1.24577271559008 1.79718031101519 0.490140084822325 1.7359128004124 0.857745148439069 0.63309760956217 -0.0816900141370543 0.306337553013953 0.796477637836279 -0.34718256008248 -0.367605063616744 -0.265492545945426 1.49084275800124 1.61337777920682 1.00070267317891 1.69506779334387 -0.469717581288062 -0.142957524739845 -0.0612675106027907 0.081690014137054 -0.142957524739845 -0.57183009895938 -0.837322644904806
MMP0485 -0.194572251534169 -0.389144503068338 -0.813481217587148 0.779217054332625 1.16594694648136 -0.112647092993466 -0.348181923797987 -0.122887737811054 -0.061443868905527 -0.23553483080452 -0.440347727156277 -0.389144503068338 -0.348181923797987 0.614438689055271 -0.604198044237683 -0.491550951244216 -0.430107082338689 0.14336902744623 0.348181923797987 0.563235464967331 0.552994820149743 1.57705930190853 0.419866437521102 1.95596316015928 -0.194572251534169 0.0512032240879392 0.66564191314321 1.47465285373265 1.91500058088893 1.18791479884019 2.05836960833516 0.122887737811054 -0.460829016791453 -0.7578077165015 -0.778289006136676 0 -0.675882557960798 -0.737326426866325
MMP0486 -0.0989929275280093 0.0364710785629508 -0.65514077966554 1.15480743547885 3.19186179667662 -0.171935084653911 -0.0156304622412646 0.00521015408042155 0.140674160171382 0.161514776493068 0.0260507704021077 -0.00521015408042155 -0.00521015408042155 0.64084895189185 -1.03682066200389 0.0468913867237939 0.536645870283419 1.0889222028081 1.8391843903888 1.7662422332629 1.58909699452857 1.95380778015808 0.0364710785629508 1.10976281912979 -0.276138166262342 -0.0677320030454801 0.526225562122576 1.161864359934 1.34942990682918 0.536645870283419 1.75582192510206 -0.276138166262342 -0.817994190626182 -1.05766127832557 -0.91177696407377 -0.453283404996674 -0.786733266143653 -1.05766127832557
MMP0508 -0.873242865236203 0.168725834649494 -0.521665703318775 -0.263365416215199 -1.09003968105505 -0.634719909840682 -0.873242865236203 -0.810473666447908 -0.823027506205567 -0.0572432809883681 -0.00702792195773207 -0.15767399904964 -0.094904800261345 0.34447959125672 -0.496627672506433 0.143618155134176 0.620664065925218 1.52454052847667 1.98903259951005 1.97647875975239 1.90115572120644 0.909402380351375 1.56220204774964 2.62927842715066 -0.0572432809883681 -0.0321356014730501 0.369587270772038 0.633217905682877 1.22324837429285 0.733648623744149 1.58730972726496 0.884294700836057 -0.509181512264092 -0.810473666447908 -0.835581345963226 -0.00702792195773207 -0.710042948386636 -0.446412313475797
MMP0552 -0.250537568763475 0.0313171960954345 -0.367490964262159 0.741173087654817 2.11144790516509 -0.56370952971782 -0.720295510194992 -0.688978314099557 -0.626343921908689 -0.657661118004123 -1.08044326529249 -1.04912606919705 -0.95517448091075 0.219220372668041 -1.62849419696259 -1.28400503991281 1.89469036377378 0.125268784381738 -0.219220372668041 0.10961018633402 0.375806353145213 1.34663943210368 0.313171960954344 2.20786232472813 -0.454099343383799 -0.187903176572607 0.626343921908689 1.58151840281944 1.83205597158291 0.767271304338144 2.42708269739617 -0.187903176572607 -0.438440745336082 0.0782929902385861 0.266196166811193 0.861222892624447 -0.892540088719881 -0.814247098481295
MMP0662 -0.00300634113298845 -0.475280698307691 -1.17203990903458 1.25473753897035 1.36804172436943 -0.732884893130255 -0.418035321680454 -0.246299191798744 -0.346478600896408 -0.346478600896408 -0.389412633366836 -0.561148763248545 -0.589771451562164 -0.131808438544271 0.19735247706234 -0.0173176852897976 0.125795756278294 -0.0602517177602251 0.283220542003195 0.641004145923423 0.540824736825759 4.24746287343933 0.254597853689576 1.7000436135273 -0.203365159328317 -0.0173176852897976 0.955853717373225 1.28501463297984 1.71435495768411 1.57124151611602 2.53010157462223 -0.0888744060738433 -0.675639516503019 -0.389412633366836 -0.246299191798744 0.35477726278724 -1.03342312042325 -1.00480043210963
MMP0665 -0.292514796804225 -1.03505235792264 2.79858635594767 1.15025085021602 -0.95800648057189 -0.540027317177031 -0.0675034146471289 0.652533008255579 0.315015935019935 0.225011382157096 -0.0225011382157096 -0.58502959360845 -0.60753073182416 0.652533008255579 0.630031870039869 0.180009105725677 0.0225011382157096 -0.540027317177031 0.202510243941387 0.60753073182416 0.58502959360845 1.71008650439393 0.0450022764314193 1.71008650439393 -1.19256032543261 -0.58502959360845 0.472523902529902 1.08005463435406 1.66508422796251 1.62008195153109 2.25011382157096 -0.472523902529902 -0.967548943275513 -1.12505691078548 -0.765038699334127 -0.180009105725677 -1.19256032543261 -1.28256487829545
MMP0700 -1.02590979242054 -0.797929838549313 -0.19681155171929 0.363041118338753 1.93991988595484 -1.166205148649 -1.27142666582033 -0.7628559994922 -1.0434467119491 -1.14866822912044 -1.7273865735628 -1.7273865735628 -1.09605747053477 -0.149063815992729 0.201674574578398 0.254285333164067 0.692708321377974 -0.0964530574070598 1.166205148649 0.797929838549313 0.394580689392517 1.23635282676322 0.394580689392517 1.77999733214847 -0.710245240906531 -0.341969930806848 0.0964530574070596 1.4467958611059 2.07812496413392 1.53448045874868 2.51654795234783 -0.324433011278292 -0.552412965149524 -0.23674841363551 -0.0438422988213908 0.675171401849418 -1.324037424406 -1.46433278063445
MMP0743 -1.17919329948893 -1.41116575184741 1.24265477652215 -1.2159665971818 0.453859206433316 -0.521938017806577 -0.425282829323878 -0.347958678537718 -0.367289716234258 -0.502606980110038 -0.947220847130456 -1.27584848797163 -0.889227734040836 0.657255281682357 -1.08253811100623 -0.154648301572319 0.367289716234258 0.425282829323878 1.44982782724049 1.87511065656437 2.59035905133635 1.04387603561316 0 2.37771763667441 -0.541269055503117 -0.289965565448098 0.618593206289277 1.56581405341973 2.08775207122631 1.27584848797163 2.16507622201247 0.618593206289277 -0.405951791627338 -0.657255281682357 -0.463944904716958 0.386620753930798 -0.734579432468516 -0.966551884826995
MMP0744 -1.43994136085644 -1.49402366548955 2.10664286410172 3.13739543945593 1.97436464527163 -1.03432407610815 -0.709830248309515 -0.547583334410197 -0.628706791359856 -0.655747943676409 -0.953200619158491 -1.16952983769091 -0.736871400626068 0.398856996669156 -1.0072829237916 -0.507021605935368 0.169007201978456 0.425898148985709 1.19657099000747 1.64275000323059 1.71035288402197 1.48050308933127 -0.34477469203605 1.10192695689953 -0.628706791359856 -0.398856996669156 0.0202808642374147 0.80447428141745 0.912638890683662 0.182527778136732 1.91316152639612 0.371815844352603 -0.534062758251921 -0.601665639043303 -0.561103910568474 0.290692387402944 -0.398856996669156 -0.57462448672675
MMP0745 -1.49217387339646 -1.48018854108002 -0.233991884070951 0.470639681827227 2.23113622518184 -0.964819251473213 -0.60525928198009 -0.353567303334904 -0.569303285030778 -0.473420626499278 -0.761068602093776 -0.797024599043089 -0.677171275878714 0.377537967967779 -0.533347288081465 0.341581971018466 0.689156608195151 0.437464629549966 1.49217387339646 1.83974851057314 1.89967517215533 2.71467776967308 -0.365552635651341 0.892907257574588 -0.581288617347215 -0.413493964917091 0.173787318588343 1.1206285715869 1.18055523316909 -0.832980595992401 2.54688311724295 0.641215278929402 -0.413493964917091 -0.593273949663652 -0.353567303334904 0.317611306385591 -0.041948663107531 -0.389523300284216
MMP0746 -1.13875598870256 -1.39026037884545 0.524388916987449 -0.372989212419526 0.378225855189022 -0.579857343940565 -0.845334200202511 -0.426160216631018 -0.412187750511968 -0.621774742297715 -0.91519653079776 -1.16670092094066 -0.775471869607262 0.230545690964321 -1.30642558213115 -0.146710894250023 -0.551912411702466 0.174655826488122 1.19464585317876 1.4042328449645 1.93518655748839 0.468077614988167 0.160683360369072 1.86532422689314 -0.342325419916719 -0.160683360369072 0.635747208416765 1.4601227094407 1.7675169640598 0.663692140654864 1.94915902360744 0.496022547226267 -0.691637072892964 -0.90122406467871 -0.803416801845362 -0.0209586991785747 -0.579857343940565 -0.579857343940565
MMP0747 -1.38383143448599 -1.42374964894232 -0.999195633637394 0.282172344150661 2.57974241892951 -0.54554893090313 -0.54554893090313 -0.492324644961361 -0.11975464336898 -0.558855002388572 -0.66530357427211 -0.851588575068301 -0.771752146155648 1.11771000477714 0.771752146155648 -0.252815358223402 0.133060714854422 0.146366786339864 1.29068893408789 1.57011643528218 1.58342250676762 2.86080536937007 -0.0133060714854422 1.63664679270939 -0.612079288330341 -0.345957858621497 0.30603964416517 1.63664679270939 1.42374964894232 0.771752146155648 1.31730107705878 0.412488216048708 -0.625385359815783 -0.798364289126532 -0.572161073874015 0.359263930106939 -0.439100359019593 -0.54554893090313
MMP0748 -1.29087660951806 -1.40590521828699 1.60067867539969 0.533010940167837 2.97960521159558 -0.498457304665388 -0.357866782836689 -0.370647739366571 -0.639047826494087 -0.345085826306807 -1.16306704421924 -1.11194321809971 -1.21419087033877 0.434552522015979 -0.881886000561841 0.281181043657399 0.242838174067753 0.51123826119527 1.27809565298817 1.64874339235475 1.80211487071333 0.370647739366571 -0.345085826306807 1.41868617481687 -0.677390696083732 -0.472895391605625 0.255619130597635 1.08638130503995 1.23975278339853 1.50815287052605 1.49537191399616 0.549581130784915 -0.485676348135506 -0.958571739741131 -0.677390696083732 -0.204495304478108 -0.332304869776925 -0.549581130784915
MMP0749 -1.44484255812902 -1.33370082288833 0.724638087417458 0.437093795383355 0.993966903546942 -0.8273884734585 -0.592755921283702 -0.481614186043008 -0.777992146684858 -0.407519695882545 -0.876784800232142 -0.889133881925552 -1.08671918902012 0.246981633868209 -1.27195541442128 -0.407519695882545 0.0123490816934105 0.160538062014336 1.28430449611469 1.32135174119492 1.22255908764763 1.34604990458174 -0.419868777575955 1.76591868215769 -0.938530208699194 -0.605105002977112 0.123490816934104 0.728595819911216 1.0620210256333 0.679199493137575 1.40779531304879 0.456916022656187 -0.531010512816649 -0.753293983298037 -0.691548574830985 -0.197585307094567 -0.222283470481388 -0.358123369108903
MMP0750 -1.25863981299149 -1.26935164118716 1.79167295969444 2.10026541209743 2.57685857874708 -0.562370980272791 -0.273151618989642 -0.369558072750691 -0.637353777642497 -0.819454856968925 -0.733760231403547 -1.06582690546939 -0.658777434033841 0.0267795704891806 -0.540947323881447 1.0979623900564 0.819454856968925 0.626641949446825 1.53714734607896 1.91206133292749 2.08345058405825 0.819454856968925 -0.530235495685775 0.594506464859808 -0.873013997947286 -0.733760231403547 -0.0267795704891804 0.455252698316069 0.690912918620858 -0.0803387114675416 0.508811839294431 0.905149482534302 -0.669489262229514 -0.101762367858886 -0.0589150550761971 0.326710759968003 -0.21959247801128 -0.465964526511741
MMP0776 -0.955129000726811 -1.2996017550873 1.82129039687084 0.345263115779664 1.55097213576301 -0.641971951308185 -0.735919066133772 -0.438419869186077 -0.563682688953528 -0.501051279069803 -0.861181885901223 -0.876839738372154 -0.563682688953528 -0.0626314098837254 -1.26828605014544 -0.735919066133772 -1.03341826308147 0 -0.313157049418627 -0.391446311773283 -0.0939471148255881 2.051178673692 0.281841344476764 2.44262498546529 -0.485393426598871 -0.156578524709313 0.70460336119191 1.64407450944779 1.95723155886642 1.44052242732568 2.55222995276181 1.03341826308147 -0.297499196947695 -0.485393426598871 -0.422762016715146 0.344472754360489 -0.751576918604704 -0.767234771075635
MMP0777 -0.954152627680067 -0.997854274749383 0.588488010963567 1.48218544075053 1.32081122379194 -1.08525756888802 -1.12895921595733 -0.677375529574399 -0.837614902161891 0.094686901983518 0.10925411767329 -0.313195137330099 -0.138388549052834 1.1435264316471 -2.30890368682887 -1.09982478457779 -0.779346039402803 -0.021850823534658 -0.371464000089187 0.546270588366451 0.0218508235346579 -0.531703372676679 0.18209019612215 1.79905113768684 -0.444300078538047 -0.0364180392244301 0.677375529574399 2.16323152993114 2.42544141234704 1.34746745130391 2.0321265887232 1.02698870612893 -0.371464000089187 -0.517136156986907 -0.371464000089187 0.0218508235346579 -0.211224627501694 -0.342329568709643
MMP0960 -0.201252278529534 -1.13659547694687 -1.11511335512355 -0.00893720426087766 -0.849207149009805 -0.495517554436111 -0.684688088947482 -0.810801778621729 -0.800292304482209 -0.831820726900771 -1.02099126141214 -1.01048178727262 -0.800292304482209 -0.0646291147157666 0.05097510081896 0.208617212911769 0.103522471516563 0.05097510081896 0.240145635330331 0.21912668705129 -0.442970183738508 0.439825643981222 0.135050893935125 1.25956462686383 0.0614845749584806 0.124541419795604 0.313711954306975 0.975808825096773 1.21752673030575 1.07039409235246 1.25956462686383 -0.190742804390014 -0.558574399273235 -0.590102821691797 -0.558574399273235 0.240145635330331 -0.421951235459467 -0.726725985505564
MMP1280 0.54377663454377 -0.394504617218029 1.06672263628919 0.223542800011363 2.28607559042535 -0.0746360086628704 -0.586425782351125 -0.287881747699643 -0.842320669195252 -1.18351385165409 -1.11954012994306 -1.69530362534234 -0.884969817002607 0.778346947484221 -1.5460316080166 0.501127486736416 0.565101208447448 0.522452060640093 0.15993430427758 0.0106622869518386 -0.202583452084934 0.373180043314352 0.906294390906284 2.37768999026002 -0.778346947484221 -0.970268112617316 0.0106622869518386 1.11954012994306 1.67397905143867 0.351855469410675 2.88947976394827 -0.202583452084934 -0.0319868608555159 0.0746360086628705 0.437153765025384 0.714373225773189 -0.799671521387898 -0.927618964809961
MMP1650 -1.04440086538813 -0.682341898720248 -1.26472451089713 0.580360749578904 0.408910134997989 -0.710192588463932 -1.07225155513182 -0.835520692310508 -0.779819312823141 -0.946923451285242 -1.08617690000366 -1.1001022448755 -0.751968623079457 0.0835520692310509 -1.78244414359575 -1.49001190128707 -0.946923451285242 -0.487387070514463 0.0278506897436836 0.515237760258146 0.584864484617355 0.738043278207615 0.501312415386305 2.06095104103259 -0.501312415386305 -0.222805517949469 0.724117933335773 1.21150500385024 1.75459345385207 1.33683310769681 2.17235380000732 2.06095104103259 0.821595347438666 0.946923451285242 0.15317879359026 0.0835520692310509 -0.891222071797875 -1.14187827949103
Unanno_22 -1.63013048485426 -2.52907698011273 -0.247649131994517 0.992732783565028 1.81731225312228 -1.24980696762952 -0.791690003699725 -0.904058315607034 -0.895414599306472 -0.834908585202536 -0.80897743630085 -0.644746826590168 -0.636103110289605 -0.817621152601412 1.13585873132565 0.565373455488542 0.340636831673925 0.271487101269427 1.18772102912902 1.64583799305882 1.93972434727793 1.57668826265432 -0.601528245087356 -0.229848444163181 -1.21523210242727 -1.06828892531772 -0.143411281157559 0.427073994679547 0.24555595236774 0.530798590286293 0.859259809707657 0.980271837915528 0.236912236067178 -0.212561011562057 -0.428653919076112 -0.203917295261495 0.262843384968865 -0.402722770174426
Unanno_43 -0.768841136573917 -1.02512151543189 -0.94123931560559 0.270143008197557 -0.901090823719586 -1.82534392288638 -1.91425752371465 -1.82534392288638 -1.89856688827437 -2.15484726713234 -2.00840133635636 -2.02932218361007 -2.20714938526662 -1.60044481490897 0.486409698648805 0.146445930775984 0.0679927535745642 0.0418416945074241 -0.345193979686249 -1.03558193905875 -1.42261761325242 0.747920289320205 0.465488851395093 0.638085841238217 0.350424191499677 0.444568004141381 0.747920289320205 -0.0418416945074241 -0.20920847253712 -0.0993740244551321 -0.716539018439637 0.434107580514525 0.28766164973854 0.282431437925112 0.308582496992253 0.334733556059393 0.899596431909618 0.988510032737894
[+] Show/hide bicluster #62 motif PSSM #1. bicluster 62 motif PSSM #1 Methanococcus maripaludis S2 24x4
POSITION A C G T
1 1 0 0 0
2 1 0 0 0
3 1 0 0 0
4 0 0.2 0.8 0
5 0.2 0.4 0.4 0
6 0.2 0 0 0.8
7 0.8 0 0 0.2
8 0.8 0 0 0.2
9 0.8 0.2 0 0
10 0.6 0.2 0 0.2
11 0 0 0.8 0.2
12 0 0 1 0
13 0.6 0 0 0.4
14 0.4 0 0.2 0.4
15 0 1 0 0
16 1 0 0 0
17 0 0 0 1
18 0 0.8 0 0.2
19 0.4 0 0 0.6
20 0.4 0 0.6 0
21 0.4 0.6 0 0
22 1 0 0 0
23 0.6 0 0.4 0
24 0 0.2 0.6 0.2 [+] Show/hide bicluster #62 motif PSSM #2. bicluster 62 motif PSSM #2 Methanococcus maripaludis S2 17x4
POSITION A C G T
1 0 0 0 1
2 0 1 0 0
3 0.2 0.2 0.6 0
4 0 0.4 0 0.6
5 0 0 0.6 0.4
6 0 0 0 1
7 0 0 0 1
8 0 0.8 0 0.2
9 0 1 0 0
10 0.2 0.6 0 0.2
11 0.6 0 0 0.4
12 0 0 0 1
13 0 0.2 0 0.8
14 0.2 0.8 0 0
15 0 0.6 0.2 0.2
16 0.2 0.8 0 0
17 0.072011 0.027989 0.827989 0.072011 |