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bicluster 61
Methanococcus maripaludis S2
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bicluster 61 genes
Methanococcus maripaludis S2
24
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bicluster 61 short names
Methanococcus maripaludis S2
24
short_name
[+] Show/hide bicluster #61 rows (long gene names).
bicluster 61 long names
Methanococcus maripaludis S2
24
long_name
[+] Show/hide bicluster #61 rows (NCBI RefSeq gene IDs).
bicluster 61 NCBI RefSeq IDs
Methanococcus maripaludis S2
48
[+] Show/hide bicluster #61 gene upstream sequences.
bicluster 61 upstream sequences
Methanococcus maripaludis S2
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upstream
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bicluster 61 arrays
Methanococcus maripaludis S2
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[+] Show/hide bicluster #61 ratios.
bicluster 61 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_HighH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
MMP0043 0.0291717568366182 1.19570274561985 0.413099396765695 2.4442272377389 -0.363753339812628 -0.026083334879682 0.213355395890952 -0.240964247109738 -0.376032249082917 -0.0629200626905488 -0.0138044256093931 0.0291717568366182 -0.0936173358662711 -0.0199438802445375 1.89556596592054 1.20180759214921 0.403678489580431 0.23791321443153 -0.191848610028583 -0.0629200626905488 0.133542485634074 -0.253243156380027 -0.185709155393438 -0.811933528178174 -1.48113408340892 -2.11963736546394 -1.85564081615273 -0.124314609041993 0.643117220351065 1.82803196493395 1.73594014540678 1.15269195506806 0.557164855459042 0.0414506661069071 -0.57249479740754 -0.0567806080554043 0.354562852499275
MMP0045 -0.076366734775088 1.44474975025471 0.407057251811813 2.29894333272564 -0.360014606796844 -0.365469373566493 0.469109942189828 -0.147278702780527 -0.332740772948599 -0.152733469550176 -0.103640568623334 -0.00545476676964916 -0.180007303398422 -0.0981858018536846 1.82734686783247 1.64733956443405 0.529112376655968 0.120004868932282 -0.0981858018536846 -0.0218190670785963 0.0381833673875441 -0.403652740954037 -0.507293309577371 -0.0654572012357896 0.141823936010878 -1.36369169241229 -1.79461826721457 -0.441836108341581 0.550931443734565 2.16554240755072 2.32373064387054 2.12190427339352 1.77279920013598 1.35823692564264 0.660026779127548 0.572750510813162 0.796395948368777
MMP0060 0.309867255325667 1.19226940867477 0.618664501332137 -0.0764556499789636 -0.347553813405816 0.205182371769699 0.406177348197158 -0.0418739534223875 -0.389427766828203 -0.314054650667906 -0.142371441636117 -0.221931953138653 -0.376865580801487 -0.180057999716266 0.850041254474465 1.02172446350625 0.489925255041933 0.0418739534223874 -0.205182371769699 -0.238681534507608 -0.238681534507608 -0.180057999716266 0.0418739534223874 -1.23109423061819 -1.19340767253804 -2.10625985714609 -2.23606911275549 -0.263805906561041 0.372678185459248 1.53677409060162 1.85082874126953 1.61633460210416 1.20178246322252 0.829104277763271 0.288930278614473 0.293117673956712 0.561110975859992
MMP0061 0.274785642953773 1.17987894517114 0.657639853039396 -0.266834445589263 -0.479849555605843 0.381418877532849 0.467545720846719 -0.0779242868077864 -0.377317599279808 -0.237874138676401 -0.123038347591242 -0.0574178955425795 -0.32400098199027 -0.282988199459856 0.816154372355237 1.09094001530901 0.315798425484187 -0.020506391265207 -0.336304816749394 -0.20506391265207 -0.250177973435525 -0.237874138676401 -0.393722712291974 -1.27959881494891 -1.19347197163505 -2.01782890049636 -2.18188003061802 -0.246076695182484 0.410127825304139 1.72663814453043 1.85377777037471 1.62410618820439 1.19757324988809 0.877673546150858 0.344507373255477 0.336304816749394 0.537267451148422
MMP0062 0.0380347739270684 0.97178537735853 0.444295210902486 -0.0625856656367595 -0.481028023195276 0.257294058918403 0.324414248201465 -0.167800473207654 -0.458654626767589 -0.324414248201465 -0.0872562460679802 -0.109629642495668 -0.328888927487003 -0.275192776060553 0.463129306053126 1.02693889603084 0.400483796055602 -0.0380347739270683 -0.445230588910976 -0.284142134631628 -0.234920662490716 -0.158851114636579 -0.856901083180422 -1.21935010530896 -1.46098278672798 -2.23957698241149 -2.31117185098009 -0.167800473207654 0.293091493202703 1.34016644601847 1.57732444815195 1.40281195601599 1.02693889603084 0.574996288191562 0.100680283924593 0.208072586777492 0.436281230339901
MMP0155 -0.0133956446651189 1.69966849938092 0.241116558279315 -0.0566156830385601 -0.352751976181463 0.540291001493126 0.370612835734955 0.111630372209324 -0.200934669976783 -0.111630372209324 0.129491231762816 0.263447678414004 -0.477777993055905 -0.549221431269872 0.781412605465266 0.826064754348995 -0.00446521488837295 0.165212950869799 -0.57601272060011 -0.397404125065192 -0.129491231762816 -0.549221431269872 -0.0669782233255943 0.00446521488837295 -0.968951630776929 -1.36189054095375 -0.986812490330421 -0.352751976181463 0.96895163077693 1.76375988090731 1.79055117023755 1.33509925162351 0.531360571716381 0.245586818860512 -0.200934669976783 -0.209865099753528 -0.0223260744418648
MMP0249 0.0947924510521097 0.831201986777999 0.634394393973354 0.261272801996805 -1.24953685477781 0.0201074896171142 0.439492273059782 -0.232672379855178 -0.709507133632458 -0.278632356122868 -0.140752427319799 0.175222409520567 -0.824407074301681 -0.876112047602832 1.66317664118702 1.2208118696105 0.157987418420183 -0.157987418420183 -0.893347038703216 -0.588862195929772 -0.640567169230923 -0.657802160331307 -0.456727264160165 -0.801427086167837 -0.267142362055945 -1.89872151955893 -2.2721463267339 -0.709507133632458 0.014362492583653 1.41614176874818 1.5023167242501 1.00824697937244 0.565882207795928 0.359062314591325 -0.238417376888639 -0.0143624925836529 0.387787299758631
MMP0250 -0.00678540851426286 0.76945695910871 0.863417082475535 -0.0138845539619997 -1.17387567296747 0.0135708170285257 0.325699608684617 -0.318914200170354 -0.576759723712343 -0.230703889484937 0.00678540851426286 0.18999143839936 -0.61747217479792 -0.651399217369234 1.68278131153719 1.09245077079632 0.176420621370834 -0.223918480970674 -0.834605247254331 -0.590330540740869 -0.766751162111703 -0.37998287679872 -0.434266144912823 -0.66497003439776 -0.508905638569714 -2.05597877982165 -2.23239940119248 -0.339270425713143 0.210347663942149 1.45886283056651 1.38422333690962 0.922815557939749 0.366412059770194 0.257845523541989 -0.33248501719888 -0.0203562255427885 0.434266144912823
MMP0384 1.07217740707175 2.10172629553314 1.60954219871001 0.216263040167014 -0.475585254055448 -0.0816093039503431 0.807650697715465 0.0365834810811883 -0.205430316840519 -0.436187659044937 -0.430559431186293 -0.441815886903582 -0.605034494804268 -0.0365834810811883 1.34233234428668 0.734483735553088 0.278597279002896 -0.160404493971364 -0.554380444076469 -0.28422550686154 -0.137891582536787 -0.166032721830008 -0.661316773390712 -1.02152335634395 -1.25228069854837 -0.98212576133344 -1.28042183784159 -0.132263354678142 0.734483735553088 1.79259057297823 1.46052512931821 1.14534436923413 0.790766014139532 0.576893355511046 0.379905380458494 0.267340823285607 0.63317563409749
MMP0440 -0.307685286383601 0.856027959168425 0.302588024893923 2.0718417176365 -1.15177766495808 0.667105266937895 0.264119228134595 -0.313131043664726 -0.465612247536245 -0.340359830070355 -0.160649839793207 -0.0190601504839398 -0.721562839749152 -0.296793771821349 1.40228249988986 0.961176160118681 0.0898549951385737 0.100746509700825 -0.356697101913732 -0.324022558226978 -0.443829218411742 -0.895827072745173 -1.40228249988986 -1.3478249270786 -1.85972611150442 -1.62555854841601 -1.36960795620311 -0.863152529058419 0.754237383435906 1.3478249270786 1.57110097560476 1.22257250961271 0.792357684403786 0.656213752375644 0.302239529102475 0.443829218411742 0.25867347085347
MMP0441 -0.483000138971669 0.927024309653084 0.233516408166101 1.8352303764176 -0.638836669973085 0.576688271837963 0.150735087100758 -0.244050791436163 -0.472611036904907 -0.353136363137155 -0.342747261070394 -0.244050791436163 -0.654420323073227 -0.332358159003633 1.65196033574774 0.898750435907557 0.368906230502741 0.124762331933855 -0.332358159003633 -0.238856240402783 -0.186910730068977 -0.908953323708873 -1.66735777458243 -1.40763022291341 -1.67774687664919 -1.50113214151426 -1.65696867251567 -0.820645956141404 0.73771935387276 1.314314518578 1.40262188614547 1.22081259997715 0.966279599341504 0.794859415239946 0.566299169771202 0.420851740836547 0.192291495367803
MMP0442 0.0293456353072264 0.768148833835418 0.19161687809586 -0.0107731207759636 -0.754414477912064 0.493658498588796 0.489943995682544 -0.0895184576928555 -0.304959626255504 -0.104376469317866 -0.0152283995678043 0.0107731207759636 -0.37182067856805 -0.434967227974343 0.939398847339103 0.920826332807841 0.374794405588714 0.0962066876197724 -0.223240562317948 -0.215811556505442 -0.2269550652242 -0.260385591380473 -1.64960967831893 -1.20015482666237 -1.67932570156895 -2.00620195731918 -1.80190429747529 -0.278958105911736 0.723957678776455 1.63772539371458 1.71944445765214 1.48914527746448 1.0099744025579 0.742530193307718 0.307933353276168 0.367365399776209 0.58652107124511
MMP0457 -0.19400574825551 0.424268825313001 0.160830485655893 0.053076994472302 -0.207988144526178 -0.00873899766916711 0.0891377762255047 -0.344316508165185 -0.501618466210193 -0.389759296044854 -0.197501347323177 -0.0332081911428351 -0.267413328676514 -0.0401993892781688 2.10959403733695 1.75304293243493 0.924585953397882 0.564539249428197 0.309360517488516 0.344316508165185 0.239448536135179 -0.0262169930075014 -0.753301599082206 -0.81622238230021 -0.93856834966855 -1.14480869466089 -1.28812825643523 -0.0506861864811693 0.56104365036053 1.8404329091266 1.95229207929194 1.58525417718692 1.13082629839023 0.470158074601192 -0.057677384616503 -0.235952937067512 0.00873899766916714
MMP1208 0.131657215989412 1.50965917000623 0.352822614269793 -0.858178722182388 -1.11177204613281 0.343771619527908 0.416914517299803 -0.124342926212222 -0.482743125294509 -0.248685852424444 -0.190171534206928 -0.16091437509817 -0.768000426604901 -0.373028778636666 1.22148639279065 1.47748653499228 0.519314574180457 0.351085909305097 -0.16091437509817 -0.0365714488859476 -0.102400056880653 -0.78262900615928 -1.0459434381381 -0.680228949278626 -1.05325772791529 -1.89440105229209 -1.58720088165013 -0.702171818610195 0.753371847050521 2.15771548427091 2.09188687627621 1.5360008532098 0.93622909148026 0.746057557273332 0.190171534206928 0.109714346657843 0.138971505766601
MMP1399 0.516102628686883 -0.346251956878175 -0.128162023935442 -1.19540441785781 -1.00640012593942 0.141928222888893 0.2774051629192 -0.0580615457272744 -0.361271840080818 0.0129025657171721 0.0451589800101023 0.2774051629192 -0.367723122939404 -0.212892334333339 1.41283094603034 1.7547489375354 0.554810325838399 0.251600031484856 -0.561261608696985 -0.109671808595963 -0.264502597202028 -0.303210294353544 -0.851569337333357 -1.10316936881821 -0.354820557222232 -0.696738548727292 -1.1547796316869 -0.24514874862627 0.851569337333357 2.41277978911118 2.50309774913138 2.2644002833637 1.43863607746469 0.974143711646492 0.367723122939404 0.283856445777786 0.71609239730305
MMP1400 0.262739817130104 0.959765567762014 0.489065105533873 -0.427278768558033 -0.523271736637266 -0.0154552833605944 0.240660840900683 -0.0728606215570876 -0.320145155326597 -0.103771188278276 0.0154552833605943 0.125850164507697 -0.558598098604338 -0.320145155326597 1.18564102351988 1.3181148808964 0.470282193686656 0.143513345491233 -0.35547151729367 -0.152344935983001 -0.293650383851292 -0.532103327129034 -1.0134250089304 -1.21213579499518 -1.19888840925753 -1.96723678204137 -2.05996848220493 -0.505608555653729 0.532103327129034 1.77735758646835 1.96723678204137 1.64929952433771 1.08407773286455 0.638082413030252 0.0684448263112035 0.0507816453276671 0.426124241227815
MMP1401 -0.0727922074675259 0.786176681526693 0.433831023854303 -0.77460339900209 -0.761302170774013 0.0320801710493562 0.54276305774026 0.0548785142052001 -0.373730337124666 -0.136627568303889 0.013841496524681 0.105034869148057 -0.391969011649341 -0.355491662599991 0.953133234545451 1.1355199797922 0.278302277132471 -0.0545535329428508 -0.405648017542847 -0.305335307657134 -0.305335307657134 -0.569796088264924 -1.15343367305453 -1.29934306925193 -1.39965577913764 -2.0197707129766 -2.0334497188701 -0.528759070584405 0.451569685116885 1.75107524499999 1.96537967066492 1.54589015659739 0.998729920857139 0.62027742447013 0.0184011651558498 0.0639978514675377 0.351256975231171
MMP1403 -0.0232800541793787 0.818298187935129 0.368560133265385 -0.972886834667352 -0.624681453813328 -0.0892402076876182 0.314280731421612 0.0232800541793787 -0.353080821720576 -0.0892402076876182 0.0271600632092751 0.0737201715680324 -0.547081273215399 -0.372480866870059 0.919562140085458 1.18728276314831 0.481121119707159 0.100880234777308 -0.29488068627213 -0.252200586943269 -0.252200586943269 -0.58976137254426 -1.10580257352049 -1.33472310628438 -1.17564273605862 -1.8585243253204 -2.13400496644305 -0.601401399633949 0.477241110677263 1.83136426211112 1.87016435241009 1.59080370225754 1.10968258255038 0.845841968517425 0.217280505674201 0.159080370225754 0.430681002318505
MMP1434 0.00956320141533979 0.6538929674704 0.379470356845856 0.557740696033605 -0.827216922426891 1.06629695781039 0.463815268643979 -0.047816007076699 -0.267769639629514 -0.262988038921844 -0.157792823353106 -0.00956320141533979 -0.564228883505047 -0.44947046652097 1.65443384485378 1.05673375639505 0.210390431137475 -0.167356024768446 -0.396872858736601 -0.502068074305339 -0.43512566439796 -0.683768901196795 -1.07107855851806 -1.20496337833281 -1.65443384485378 -1.49664102150068 -1.35797460097825 -0.669424099073785 0.478160070766989 1.47751461867 1.59705463636174 1.1428025691331 0.688550501904464 0.502068074305339 0.0573792084920387 0.0621608091997086 0.296459243875533
MMP1443 0.131321256975332 1.30368204863366 0.180799680035025 2.20298083360753 -0.748225766487358 0.485583252536694 0.338992081959579 -0.510015114299546 -0.571094768706677 -0.461151390773841 -0.49779918341812 -0.601634595910243 -0.369531909163144 -0.0519177062460616 0.357315978281718 1.62166482450934 0.723793904724506 0.229048704026742 -0.125213291534619 -0.0335938099239222 -0.0213778790424959 -0.314560220196726 -0.38174784004457 -0.638282388554522 -1.45674975761008 -1.28572672527011 -0.0152699136017828 -0.3023442893153 0.809305420894489 2.3485127119542 2.49510388253131 1.98814275095212 1.37734620688081 0.937572695149465 0.235156669467455 0.0885654988903403 0.119105326093906
MMP1444 0.00784411992819054 1.09899962766832 0.271830848421135 1.12339988702881 -0.420967769479559 0.405279529623178 0.603997234470671 -0.0810559059246356 -0.321608917055812 -0.29023243734305 -0.332067743626733 -0.243167717773907 -0.29546185062851 -0.222250064632065 1.68648578456097 1.19492093572769 0.572620754757909 0.185644171633843 -0.0915147324955563 -0.00784411992819054 -0.138579452064699 -0.279773610772129 -0.802714939318165 -0.943909098025595 -0.938679684740134 -1.22106800215499 -1.34134450772058 -0.342526570197653 0.541244275045147 2.1832800466797 2.44998012423818 2.11006826068325 1.68648578456097 1.23675624201137 0.671979607181656 0.384361876481336 0.499408968761464
MMP1445 0.0482040878441722 0.940161249546323 0.291326942098961 0.713390185722979 -0.45420208781484 0.281881378848364 0.67913277355549 -0.0394248962823997 -0.278944119561696 -0.343205374587849 -0.31983764548743 -0.167947406334705 -0.781350295220708 -0.384098900513582 1.80078377037561 1.28669373016639 0.492190940752136 0.287723311123469 -0.156263541784495 -0.115370015858762 -0.226366729085753 -0.267260255011486 -0.693721311094136 -1.00918565394979 -0.606092326967564 -1.10849850262658 -1.24870487722909 -0.0686345576579236 0.527242534402765 2.40834472698651 2.62449622116538 2.2798222169342 1.90009661905239 1.38016464656806 0.8134972158829 0.538926398952975 0.638239247629756
MMP1472 -0.864815587788195 0.742861467538405 0.0344624886007855 1.64018277568165 -0.150747671265832 -0.150747671265832 -0.00793408796135959 0.325297606415743 -0.261824902724866 0.0396704398067979 0.293561254570305 0.420506661952058 0.00793408796135959 -0.166615847188551 1.00762917109267 1.08697005070626 0.119011319420394 0.499847541565654 -0.896551939633633 -0.230088550879428 0.00793408796135959 -0.848947411865476 -1.32499268954705 -0.452243013797496 -0.57918842117925 -2.11840148568301 -1.92798337461038 -0.610924773024688 0.3729021341839 1.78516979130591 2.26121506898748 1.9438515505331 0.991760995169948 0.848947411865476 -0.119011319420394 0.166615847188551 0.214220374956709
MMP1579 -0.309905727651511 0.441944212106523 0.191430654749327 0.104450589988168 -0.824896128013581 -0.0865913062555693 0.200527235539213 -0.104821054940952 -0.419284219763809 -0.186854924025176 -0.036459497370766 0.036459497370766 -0.592466832274948 -0.164067738168447 1.0755551724376 1.0755551724376 0.48308834016265 0.278003667452091 -0.232429295738633 -0.177740049682484 -0.205084672710559 -0.387382159564389 -0.610696580960331 -0.610696580960331 -0.988963866182028 -2.15566778204654 -2.48380325838343 -0.423841656935155 0.33269291350824 1.63611994451312 1.7728430596535 1.45382245765929 0.952504368811262 0.820338690842235 0.036459497370766 -0.0638041203988405 0.328135476336894
[+] Show/hide bicluster #61 motif PSSM #1. bicluster 61 motif PSSM #1 Methanococcus maripaludis S2 7x4
POSITION A C G T
1 0 0 1 0
2 0 0.5 0.5 0
3 0 0.5 0.5 0
4 0 0 1 0
5 1 0 0 0
6 0 0 1 0
7 0 0 1 0 [+] Show/hide bicluster #61 motif PSSM #2. bicluster 61 motif PSSM #2 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 0 1 0
2 0 0.5 0.5 0
3 0 0.5 0.5 0
4 0 0 1 0
5 1 0 0 0
6 0 1 0 0
7 1 0 0 0
8 0 0 1 0 |