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[+] Show/hide bicluster #57 rows and columns.
bicluster 57
Methanococcus maripaludis S2
17x40
[+] Show/hide bicluster #57 rows (genes).
bicluster 57 genes
Methanococcus maripaludis S2
17
[+] Show/hide bicluster #57 rows (short gene names).
bicluster 57 short names
Methanococcus maripaludis S2
17
short_name
[+] Show/hide bicluster #57 rows (long gene names).
bicluster 57 long names
Methanococcus maripaludis S2
17
long_name
[+] Show/hide bicluster #57 rows (NCBI RefSeq gene IDs).
bicluster 57 NCBI RefSeq IDs
Methanococcus maripaludis S2
34
[+] Show/hide bicluster #57 gene upstream sequences.
bicluster 57 upstream sequences
Methanococcus maripaludis S2
17
upstream
[+] Show/hide bicluster #57 columns (arrays; conditions).
bicluster 57 arrays
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #57 ratios.
bicluster 57 ratios
Methanococcus maripaludis S2
17x40
GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0027 -0.257377728868019 -1.4543934319557 -1.15048829142502 -0.782544872112135 -1.0042280183265 -1.94677667202932 -2.15549404221688 4.96240065300614 0.183841234905728 0.341419436253495 -0.215356875175281 0.351924649676679 0.162830808059359 0.414955930215786 0.14182038121299 0.793143613450426 -0.467481997331708 -0.0892943140970677 0.173336021482543 0.456976783908524 0.120809954366621 1.04526873560685 1.27638343091691 0.467481997331708 0.667081052372212 1.07678437587641 1.47598248595741 1.43396163226468 1.51800333965015 -0.0367682469811454 0.0577786738275145 -0.204851661752097 -0.173336021482543 -0.320409009407126 -0.383440289946232 -0.0472734604043299 -0.152325594636174 -0.477987210754892 -0.635565412102659 0.0892943140970679
MMP0121 -0.160927843321857 -1.83245949036662 -0.518576726828717 -0.530229494566049 -1.33819865620576 -1.08497999955917 -1.65714419332126 5.15972738607962 -0.047843412879471 0.517578739332459 0.134831436296691 0.630663169774845 0.569771553382791 0.482783529965571 0.935121251735115 0.221819459713911 -1.10909729856955 -0.039144610537749 -0.100036226929803 0.708952390850343 0.004349401170861 0.256614669080799 1.52663981097221 1.98767633508348 1.34396496179605 0.352301494839741 1.10909729856955 0.969916461102002 0.630663169774845 0.126132633954969 -0.482783529965571 -0.300108680789409 -0.239217064397355 -0.326205087814575 -0.691554786166899 -0.134831436296691 -0.056542215221193 -0.091337424588081 -0.108735029271525 -0.474084727623849
MMP0122 -0.189085653578764 -2.2264040131012 -0.699939753632064 -0.690120970538722 -0.83882565266201 -1.30799249247637 -1.94464776433196 5.53697663499004 -0.0850885441104438 0.245811349652393 -0.0283628480368146 0.62398265680992 0.472714133946909 0.406534155194342 0.595619808773106 0.245811349652393 -0.983245398609572 0.113451392147258 0.0661799787525672 0.236357066973455 -0.0661799787525674 0.699616918241426 0.62398265680992 0.954882550572757 0.869794006462313 0.72797976627824 1.19123961754621 1.17233105218834 0.699616918241426 -0.0189085653578764 -0.368717024478589 -0.378171307157528 -0.444351285910095 -0.699616918241426 -0.765796896993993 -0.283628480368146 -0.179631370899826 -0.226902784294517 -0.302537045726022 -0.330899893762837
MMP0207 -0.384329451612135 -1.31880081937712 -1.46214936807944 -0.96748401155733 -1.34955867726797 -1.44874570972446 -1.14130822659413 5.62654913501046 0.290590560975029 -0.14998222501937 -0.215599448465344 0.253095004720186 -0.0374955562548424 0.918641128243639 0.215599448465344 0.131234446891948 -0.496816120376662 0.00937388906371061 0.224973337529055 0.674920012587163 0.224973337529055 0.77803279228798 0.131234446891948 0.299964450038739 0.534311676631504 0.515563898504083 0.693667790714585 0.703041679778295 0.93738890637106 0.15935611408308 0.0187477781274212 -0.328086117229871 -0.374955562548424 -0.609302789141189 -0.534311676631505 0.15935611408308 0.112486668764527 -0.45932056412182 -0.628050567268611 -0.131234446891948
MMP0425 -0.37518996946662 -1.10478829536383 -1.27880114422176 -0.776752586410544 -0.828126857530356 -1.32437831860043 -0.904288708075228 4.89930468977157 0.0166013260825938 0.235738830372832 -0.0630850391138564 0.136130873877269 0.102928221712082 0.0431634478147439 0.581046412890783 0.53456269985952 -0.142771404310307 -0.0166013260825938 0.102928221712082 0.600968004189895 -0.229098299939794 0.707216491118495 1.73649870823931 0.58768694332382 0.660732778087233 0.760340734582796 0.992759299739109 0.806824447614058 1.05252407363645 -0.242379360805869 -0.0365229173817064 -0.341987317301432 -0.37518996946662 -0.381830499899657 -0.415033152064845 -0.0763660999799314 -0.142771404310307 -0.249019891238907 -0.288863073837132 -0.102928221712082
MMP0426 -0.539656712329654 -0.982747567056965 -0.861929979964331 -0.765749280003628 -0.75337704588682 -0.855797657030655 -1.17328003106754 5.18777141098526 0.175120390093729 0.0107216565363508 0.0393127406332861 0.0964949088271568 0.132233763948326 -0.0107216565363507 0.346666894675341 0.089347137802923 -0.0536082826817537 0.0750515957544553 0.089347137802923 0.275189184433003 -0.0679038247302214 0.675464361790097 0.360962436723809 0.668316590765863 0.725498758959734 0.632577735644694 0.882749721492878 0.789828698177839 0.66116881974163 -0.0250171985848183 -0.039312740633286 -0.210859245214898 -0.28948472648147 -0.275189184433002 -0.268041413408769 0.0607560537059876 -0.0107216565363507 -0.218007016239132 -0.218007016239132 -0.0464605116575199
MMP0465 -0.677105501877204 -0.849351579320399 -1.01230159257098 -0.628197035444049 -0.87720821125845 -1.40852264419484 -1.36628473527719 4.95739880893397 0.120374311444836 0.225701833959068 0.180561467167254 -0.0150467889306045 0.142944494840743 0.0978041280489294 0.173038072701952 -0.135421100375441 0.406263301126322 0.56425458489767 0.368646328799811 -0.203131650563161 -0.0827573391183249 0.647011924015994 0.481497245779345 0.56425458489767 0.383693117730415 0.255795411820277 1.39935137054622 0.857666969044458 0.947947702628085 0.030093577861209 -0.127897705910138 -0.376169723265113 -0.278365595216184 -0.225701833959068 -0.263318806285579 -0.248272017354975 -0.39873990666102 -0.458927062383438 -0.669582107411901 -0.142944494840743
MMP0534 0.0407729945802591 -1.12473034933215 -0.502443899746761 -0.595861870467199 -1.32288555361841 -1.13482221819135 -1.01590181758015 5.89470985353439 0.249168300212695 0.176682976514456 -0.049833660042539 0.303532292986374 0.0407729945802591 0.240107634750415 0.611594918703887 0.720322904251245 -0.249168300212695 0.249168300212695 0.376017616684612 0.720322904251245 -0.0860763218916583 0.47568493676969 0.892475548034561 1.36363015207311 1.06462819181788 0.93777887534596 1.37269081753539 1.12805285005384 1.07368885728016 -0.0679549909670986 -0.176682976514456 -0.294471627524094 -0.303532292986374 -0.394138947609172 -0.46662427130741 -0.0407729945802592 -0.131379649203057 -0.412260278533731 -0.584412922317048 -0.285410962061814
MMP0535 -0.0396563817896064 -1.20700387676925 -0.720540138516041 -0.523567095058373 -0.933828128083612 -1.44287412685294 -1.67864489890291 5.8330913812343 0.0198281908948032 0.112359748403885 -0.204891305912966 0.0132187939298688 -0.125578542333754 -0.0132187939298688 0.49570477237008 0.535361154159686 -0.10575035143895 0.244547687702573 0.323860451281785 1.15664446886352 -0.416392008790867 0.389954420931129 0.489095375405145 0.429610802720736 0.363516833071392 0.383345023966195 0.608064520773964 0.654330299528505 0.469267184510342 -0.376735627001261 -0.224719496807769 -0.264375878597376 -0.138797336263622 -0.310641657351917 -0.502314169335014 -0.231328893772704 -0.376735627001261 -0.482485978440211 -0.555189345054489 -0.310641657351917
MMP0569 0.0926747772219419 -1.66694693592482 -0.855118398947075 -1.1063388820721 -1.37548375140674 -1.52306357991662 -1.6085706025764 5.07150887948391 -0.092674777221942 0.166814598999495 -0.129744688110719 0.0278024331665825 0.106575993805233 -0.199250771027175 0.217785726471563 0.101942254944136 -0.338262936860088 -0.0602386051942623 0.0139012165832912 0.213151987610466 0.125110949249622 0.532879969026166 1.05185872146904 1.17696967071866 1.14453349869098 0.977718899691487 0.968451421969293 0.847974211580768 0.824805517275283 0.162180860138398 0.0926747772219419 -0.0602386051942623 -0.0834072994997478 -0.129744688110719 -0.171448337860593 -0.0648723440553594 -0.125110949249622 -0.217785726471564 -0.324361720276797 0.106575993805233
MMP0612 -0.272912724012144 -1.82079844158362 -0.883485539093711 -1.22714915717731 -1.5048754520178 -1.57924165284314 -1.56643828910661 3.95191809451455 0.400508283290549 0.159494449098006 -0.0744307429124029 0.251646797465743 0.017721605455334 0.407596925472683 0.26582408183001 0.42177420983695 -0.49974927384042 0.0886080272766701 0.287090008376411 0.655699401847359 0.202026302190808 1.15190435459671 0.528103842568954 0.988865584407639 1.11646114368604 0.910890520404169 1.49924782152126 1.04557472186471 1.15899299677885 0.251646797465743 -0.0318988898196012 -0.350887788015614 -0.315444577104946 -0.698231254940161 -0.648610759665225 -0.0815193850945365 -0.0815193850945365 -0.478483347294019 -0.584812980026023 -0.0673421007302693
MMP0621 -0.387468032286976 -1.50420322038599 -1.07983165358743 -0.934631832471453 -0.995458787594552 -1.31910614913551 -1.10871901044809 4.81384237363557 0.220892990369211 0.372983246033257 0.307801707891523 0.481619142936148 0.626467005473335 0.409195211667554 -0.11949948659318 0.264347349130367 -0.727860509249366 -0.286074528510945 -0.0181059828171484 0.0832875209588827 0.0181059828171484 1.19861606249523 1.07549537933862 0.937889909928288 0.727860509249366 0.735102902376226 1.11894973809977 1.45934221506216 1.30000956627126 0.126741879720039 -0.105014700339461 -0.242620169749789 -0.322286494145242 -0.423679997921273 -0.611982219219616 -0.45989196355557 -0.56852786045846 -0.677163757361351 -0.735102902376226 -0.0977723072126014
MMP0958 -0.458758474176998 -1.32665318475196 -0.587005498557779 -0.813245896673062 -0.693119153650245 -0.992674431661466 -1.36970791042561 5.27270196025571 -0.236125685238161 -0.0472251370476322 -0.00674644814966175 0.290097270435455 0.330575959333425 0.0472251370476322 0.303590166734778 0.276604374136131 -0.0742109296462792 0.0607180333469556 0.256365029687146 0.782587985360762 -0.202393444489852 0.00674644814966172 0.168661203741544 0.721869952013806 0.485744266775645 0.532969403823278 0.532969403823278 0.701630607564821 1.05919235949689 -0.242872133387823 -0.229379237088499 -0.391293992680381 -0.478997818625984 -0.458758474176998 -0.58019454087091 -0.391293992680381 -0.303590166734778 -0.364308200081734 -0.42502623342869 -0.215886340789176
MMP0959 -0.483668301464113 -1.38453960946206 -0.641033082654232 -0.915590566614075 -1.02244959247981 -1.29570708544648 -1.68189021547846 4.76769738752943 -0.103643207456595 0.086369339547163 -0.0633375156679194 0.362751226098084 0.403056917886761 -0.207286414913191 0.564279685041465 0.380025094007517 -0.149706855215082 0.0633375156679196 0.149706855215082 0.385783049977328 -0.276381886550921 0.339719402218841 0.59882742086033 0.806113835773521 0.552763773101843 0.541247861162221 1.03067411859614 1.1112855021735 0.909757043230117 -0.184254591033948 -0.385783049977328 -0.564279685041465 -0.518216037282978 -0.53548990519241 -0.541247861162221 -0.414572829826382 -0.391541005947139 -0.33396144624903 -0.391541005947139 -0.299413710430165
MMP1001 -0.142625228936474 -1.43700525064326 -0.78848528040202 -0.700940850409592 -0.972998794643014 -0.997712295982898 -1.3116575306229 5.32224199011694 0.149582557177277 -0.0382653053244197 -0.240027824307724 0.0591372900468305 -0.0382653053244197 0.121753244214063 0.358302404401385 0.372217060882992 -0.128710572454866 0.0939239312508484 0.191326526622099 0.469619656254242 -0.121753244214063 0.650510190515135 0.13566790069567 0.476576984495046 0.476576984495046 0.664424846996742 0.887059350702457 0.880102022461653 0.768784770608796 -0.13566790069567 -0.0382653053244197 -0.128710572454866 -0.121753244214063 -0.281771793752545 -0.309601106715759 0.0869666030100448 0.0452226335652233 -0.246985152548527 -0.177411870140491 -0.0939239312508484
MMP1514 -0.412882001413924 -1.30461701002203 -0.410440193664304 -0.367116296509884 -1.00170484385219 -0.8147373755554 -2.53650714404095 5.07553698531392 0.283119086683833 0.0235932572236528 -0.141559543341917 -0.0707797716709583 0.0825764002827847 -0.106169657506437 0.377492115578444 0.672407830874104 0.0589831430591319 -0.0235932572236528 0.106169657506437 0.283119086683833 -0.141559543341917 1.19145948979447 0.483661773084882 0.71959434532141 0.790374116992368 0.943730288946111 1.53356171953743 1.36840891897186 1.12067971812351 -0.0235932572236528 -0.0353898858354791 -0.389288744190271 -0.589831430591319 -0.825764002827847 -0.754984231156889 -0.460068515861229 -0.353898858354792 -0.235932572236528 -0.389288744190271 0.0471865144473056
MMP1641 0.0390114972822334 -1.58453263789429 -0.596557752938621 -0.560152502328393 -1.34580140130683 -1.49343561993035 -2.39903732711346 4.94710707835147 0.339957333459462 -0.00557307104031906 -0.339957333459462 0.128180633927338 0.00557307104031906 0.462564896346481 0.730072306281796 1.00872585829775 -0.00557307104031906 0.261934338894996 0.328811191378824 0.70778002212052 -0.183911344330529 0.88611829541073 0.808095300846263 0.819241442926901 0.964141289975196 0.952995147894558 1.5214483940071 1.34311012071689 1.39884083112008 -0.150472918088614 -0.1170344918467 -0.47371103842712 -0.440272612185205 -0.607464743394777 -0.796949158765625 -0.284226623056272 -0.273080480975634 -0.417980328023929 -0.574026317152863 -0.00557307104031906
[+] Show/hide bicluster #57 motif PSSM #1. bicluster 57 motif PSSM #1 Methanococcus maripaludis S2 7x4
POSITION A C G T
1 0 0 1 0
2 0 0 1 0
3 0 0.5 0.5 0
4 0 1 0 0
5 0 1 0 0
6 0 0 0 1
7 0 0 1 0 [+] Show/hide bicluster #57 motif PSSM #2. bicluster 57 motif PSSM #2 Methanococcus maripaludis S2 9x4
POSITION A C G T
1 0 1 0 0
2 0 0 0.5 0.5
3 0 0.5 0.5 0
4 0 1 0 0
5 1 0 0 0
6 0 0 0 1
7 0 0 1 0
8 0 1 0 0
9 0 0.5 0.5 0 |