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bicluster 55
Methanococcus maripaludis S2
21x39
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bicluster 55 genes
Methanococcus maripaludis S2
21
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bicluster 55 short names
Methanococcus maripaludis S2
21
short_name
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bicluster 55 long names
Methanococcus maripaludis S2
21
long_name
[+] Show/hide bicluster #55 rows (NCBI RefSeq gene IDs).
bicluster 55 NCBI RefSeq IDs
Methanococcus maripaludis S2
42
[+] Show/hide bicluster #55 gene upstream sequences.
bicluster 55 upstream sequences
Methanococcus maripaludis S2
21
upstream
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bicluster 55 arrays
Methanococcus maripaludis S2
39
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bicluster 55 ratios
Methanococcus maripaludis S2
21x39
GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0090m
MMP0120 0.272204884705857 -1.60305438571878 -0.312031511921673 -0.841141646089182 -1.01834086253638 -1.94823436687413 4.77684911255352 0.0194432060504184 0.00972160302520918 0.544409769411713 0.0194432060504184 0.359699311932739 0.670790608739433 0.505523357310877 0.456915342184831 -0.155545648403347 -0.11665923630251 -0.0583296181512549 -1.32213801142845 -1.01104671462175 -0.602739387562968 -0.252761678655438 0 -0.515244960336086 0.81661465411757 1.53601327798305 2.0123718262183 1.55545648403347 0.398585724033576 0.690233814789851 0.680512211764642 0.855501066218407 0.563852975462132 -0.0194432060504184 -0.272204884705857 -0.495801754285667 -0.427750533109203 -0.301369693781484 0.0194432060504184
MMP0121 -0.160927843321857 -1.83245949036662 -0.530229494566049 -1.33819865620576 -1.08497999955917 -1.65714419332126 5.15972738607962 0.274012273764243 -0.047843412879471 0.517578739332459 0.134831436296691 0.282711076105965 0.569771553382791 0.508879936990737 0.221819459713911 -0.091337424588081 0.221819459713911 0.230518262055633 -1.10909729856955 -0.795940414267563 -0.378397901864907 -0.152229040980135 -0.039144610537749 -0.004349401170861 1.52663981097221 1.77020627654043 1.98767633508348 1.34396496179605 0.352301494839741 1.10909729856955 1.0482056821775 0.969916461102002 0.630663169774845 0.126132633954969 -0.239217064397355 -0.326205087814575 -0.691554786166899 -0.430590715915239 -0.047843412879471
MMP0482 -0.543887841575901 -1.89964273722888 -1.59674861031446 -1.68493297393802 -1.83042163593626 -2.40719505688796 2.7722634126026 -0.158347093117035 0.29604021756663 0.117039155782156 0.110154499559676 0.0344232811123988 0.371771436013907 0.468156623128624 0.681580966025496 0.447502654461184 0.364886779791427 0.240962967786792 -0.158347093117035 -0.165231749339514 -0.199655030451913 -0.0688465622247977 0.0344232811123988 -0.199655030451913 1.44577780672075 1.21169949515644 0.413079373348786 0.537003185353421 0.839928059142531 1.1566222453766 1.17039155782156 1.19793018271148 0.86058202780997 0.0137693124449595 -0.419964029571265 -0.619619060023178 -0.681580966025496 -0.523233872908462 -0.633388372468138
MMP0483 -0.407407492693098 -1.80478446981697 -1.22113823379774 -1.37747435775283 -2.41192629905881 -2.10390154997727 2.71928067840938 0.330214494077564 -0.192982496538836 -0.235867495769688 0.141520497461813 0.132943497615642 0.570370489770337 0.62183248884736 0.767641486232258 0.227290495923518 -0.00428849992308524 -0.210136496231177 -0.570370489770337 -0.390253493000757 -0.2615984953082 -0.330214494077564 0.0986354982309606 -0.00428849992308524 1.36803147546419 1.35087747577185 0.681871487770553 0.836257485001622 1.38518547515653 1.72826546900335 1.61676447100314 1.87407446638825 1.43664747423356 0.27017549515437 -0.536062490385655 -0.79337248577077 -0.904873483770986 -0.861988484540134 -0.896296483924815
MMP0543 0 -1.98950596286617 -0.122300192048002 -0.599980919578807 -1.18283568824052 -1.68910030316846 3.24024597748455 0.14608248805838 -0.973883253722532 -0.194776650744506 0 0.389553301489013 0.657371196262709 0.693891818277304 0.639110885255412 0.286078205780994 -0.14608248805838 0.444334234510905 -0.40781361249631 -0.267817894773696 -0.0913015550364875 -0.0486941626861266 0.419987153167842 0.170429569401443 1.20518052648163 1.6556015313283 1.80168401938668 1.51560581360569 1.06518480875902 1.1747466748028 0.979970024058298 1.16865990446704 0.803453684321089 -0.14608248805838 -1.08344511976632 -1.24170114849623 -1.50343227293416 -1.43647779924073 -1.40604394756191
MMP0544 -0.163951870309414 -1.79802682480305 -0.0131512571852488 -0.410180232342186 -0.963278891257793 -1.51582916395759 3.53740649894521 0.295113366556945 -0.491855610928242 0.105657871977178 -0.0327903740618828 0.426274862804476 0.491855610928241 0.338833865306122 0.265966367390827 0.0400771238534121 -0.37526761426377 0.535576109677418 -0.331547115514592 -0.185812119684002 0.0473638736449416 0.127518121351766 0.331547115514592 -0.0109301246872943 1.13308959258284 2.45927805464121 2.86733604296686 2.2843960596445 1.08936909383366 0.994641346543777 0.943634098003071 0.848906350713187 0.5064291105113 0.00364337489576475 -0.469995361553653 -0.615730357384243 -0.725031604257186 -0.681311105508009 -0.608443607592714
MMP0545 0.257512191546917 -0.95041899483747 0.605846390526996 0.120715489469526 -0.191518838135222 -0.329188467426181 1.81209925587139 -0.146684159741915 -0.453091071202803 -0.153203455730444 -0.172761343696033 0.290108671489565 0.36182092736339 0.316185855443683 0.237954303581328 -0.00325964799426477 -0.948557566331049 0.296627967478094 -0.440052479225744 -0.570438398996335 -0.335743743409272 -0.250992895558387 -0.042375423925442 -0.198838527650151 -0.146684159741915 2.14810802822049 2.85871129097021 2.63053593137167 1.39186969355106 0.863806718480165 0.49872614312251 0.531322623065158 0.329224447420742 0.146684159741915 -0.36182092736339 -0.394417407306037 -0.407455999283097 -0.492206847133981 -0.257512191546917
MMP0638 -0.796694217326553 -1.56445164511656 -0.860205432308372 -1.51601330388545 -1.88060042837128 -2.01445564545849 3.37224225176 0.231551521291954 0.0745674390601207 0.0745674390601207 -0.0981150513948957 0.208003908957179 0.333591174742645 0.294345154184687 0.239400725403546 0.153059480176037 0.0981150513948957 -0.0745674390601207 -0.678956155652678 -0.914432279000428 -0.671106951541087 -0.396384807635379 -0.286495950073096 -0.200154704845587 0.859487850219287 1.06356715712067 0.718202176210637 0.883035462554062 1.14990840234818 1.76214632305233 1.81709075183347 1.55806701615094 1.45602736270025 0.105964255506487 -0.553368889867212 -0.561218093978804 -0.631860930983128 -0.600464114536762 -0.467027644639704
MMP0902 0.120658249045004 -0.17104714022051 -0.633578706531368 -0.573803486109068 -0.707675082059803 -0.907340945528585 3.95531146535204 -0.31371144751701 0.0448159210738585 0.12755300613329 0.196500577016149 0.286132419163866 0.610186002313304 0.692923087372735 0.734291629902451 0.596396488136733 0.451606589282728 0.12755300613329 -0.106868734868432 -0.0310264068972867 0.0310264068972867 -0.341290475870153 -0.265448147899008 -0.65155454484302 0.796344443697024 1.18934559772932 0.775660172432166 0.817028714961882 1.28587219696532 1.36860928202476 1.03076618469875 1.67197859390934 1.60303102302648 -0.534343674342159 -0.410238046753012 0.00344737854414296 0.272342904987294 -0.0103421356324289 -0.424027560929584
MMP0903 -0.466765795505879 -0.857508201188928 -0.326586657224309 -0.461997150177819 -1.12198019725518 -1.39384200865074 3.73354245732448 -0.314634721415074 -0.0242026708780826 0.176333744968888 0.224739086725053 0.342294916704311 0.522086186084353 0.473680844328188 0.293889574948146 0.5566614301959 0.197078891435816 0.0518628661673197 -0.508256088439735 -0.390700258460477 -0.217824037902744 -0.286974526125837 0.134843452035032 -0.535916283728972 1.18593087302605 0.992309506001387 0.784858041332107 0.86092357837751 1.20667601949298 1.7460498276331 1.46944787474073 1.49710807002997 1.32423184947223 -0.190163842613506 -0.411445404927405 -0.480595893150498 -0.5566614301959 -0.515171137262044 -0.764112894865179
MMP0992 -0.161574228908129 -0.788333889643431 -0.146470916286713 -0.0969936224813146 -0.748752070199383 -0.606861270721903 5.31028688480568 -0.351006083490073 -0.651868440767279 0.0724298267519199 -0.0167145754042892 0.139288128369077 0.21728948025576 0.495865736993913 0.429007435376756 0.250718631064338 -0.239575580794812 0.239575580794812 0.440150485646282 0.819014194810171 0.484722686724387 -0.0167145754042892 0.083572877021446 -0.596153189419648 0.90815859696638 1.94446227203231 2.3233259811962 1.43188195963411 0.484722686724387 1.42073890936458 0.674154541306331 0.885872496427328 0.874729446157802 0.0724298267519199 -0.395578284568178 -0.206146429986233 -0.306433882411969 -0.484722686724387 -0.596153189419648
MMP1065 0.247067627410059 -1.02490764652166 -0.443338287884403 0.237190824484756 -0.914998267322323 -1.18625956664115 2.75064474447058 0.301971544612294 0.384327420415647 -0.0137259793005588 -0.0137259793005588 0.0274519586011176 0.219615668808941 0.0549039172022353 -0.466683296219 0.398053399716206 0.686298965027941 -0.109807834404471 -0.713750923629059 -0.494135254820118 -0.329423503213412 -0.343149482513971 -0.507861234120677 -0.754928861530735 1.42750184725812 1.12553030264582 1.68829545396874 1.33141999215421 1.18043421984806 1.29024205425253 1.49613174376091 1.37259793005588 1.55103566096315 0.617669068525147 -0.796106799432412 -0.603943089224588 -0.631395047825706 -0.535313192721794 -0.535313192721794
MMP1234 -0.17256542962675 -1.28158870337726 -0.638858053831913 -0.881593952360984 -1.6258581003183 -2.014046630589 3.92318363779364 -0.094126597978227 -0.337286976088647 -0.0549071821539657 -0.274535910769829 -0.180409312791602 0.251004261275272 0.274535910769829 0.227472611780716 0.117658247472784 0.407881924572318 0.48632075622084 -0.00784388316485227 0.0941265979782272 0.133346013802489 0.164721546461898 0.17256542962675 -0.17256542962675 0.909890447122862 0.964797629276828 0.894202680793158 0.83145161547434 0.800076082814931 1.08245587674961 1.09814364307932 1.16089470839813 0.964797629276828 -0.219628728615863 -0.886358797628305 -0.862827148133749 -0.878514914463453 -0.611822886858476 -0.65888618584759
MMP1235 -0.136477339209943 -0.633461597606276 -0.418945605987159 -0.347733738553974 -0.646569271199253 -0.985510398684338 4.53262720500168 0.207965469272294 -0.220963311101812 -0.0259956836590364 -0.305449282993682 -0.142976260124702 0.0454924464033144 0.116980576465665 0.168971943783739 0.123479497380425 0.311948203908441 0.415930938544588 -0.0259956836590364 -0.116980576465665 0.246958994760849 0.233961152931331 -0.045492446403314 -0.220963311101812 0.825362956174417 1.83269569796209 1.97567195808679 1.4492593639913 0.80586619343014 0.695384537879233 0.649892091475919 0.896851086236768 0.539410435925013 -0.331444966652719 -0.688885616964474 -0.669388854220196 -0.532911515010253 -0.441926622203624 -0.422429859459347
MMP1236 -0.220668830751002 -0.860889153909922 0.0187565834884085 -0.491165240964732 -1.12135659548953 -0.874174741534117 4.17749506090345 0.650392343266112 -0.0232282979737897 0.0580707449344743 -0.0464565959475795 0.116141489868949 0.104527340882054 -0.081299042908264 -0.0348424469606846 -0.290353724672372 0.162598085816528 0.162598085816528 -0.278739575685477 -0.301967873659266 -0.209054681764107 0.232282979737897 0 -0.197440532777213 0.638778194279217 1.89310628486386 2.11377511561486 1.64920915613907 0.801376280095745 0.882675323004009 1.03365925983364 0.975588514899168 1.23109979261086 0.418109363528215 -0.476180108462689 -0.650392343266112 -0.78976213110885 -0.464565959475794 -0.441337661502005
MMP1240 0.280412803880956 -0.618643154289223 -0.28334820423935 -0.152410410608881 -0.478675181486779 -0.97062433560438 3.6286880577032 0.0847759639640101 0.123903331947399 -0.0326061399861574 -0.280412803880956 -0.476049643797902 -0.0978184199584728 -0.25432789189203 -0.176073155925251 0.0326061399861577 0.345625083853272 0.280412803880956 -0.384752451836661 -0.0978184199584728 -0.189115611919714 -0.384752451836661 -0.502134555786828 -0.906450691615183 1.59770085932173 2.53675769092307 2.3150359390172 1.54553103534387 0.489092099792366 0.789068587665016 0.476049643797902 0.280412803880956 0.149988243936325 -0.123903331947399 -0.163030699930788 0.0978184199584732 0.293455259875419 0.42387981982005 0.528219467775755
MMP1241 -0.226640395665212 -0.696608730951049 -0.3120964818254 -0.800346561232345 -0.991028249834236 -1.00817210807551 2.9084996984373 0.284753317630651 -0.0639242141619827 -0.261508148844475 -0.238262980058299 -0.168527473699773 0.389356577168441 0.191772642485948 -0.0406790453758071 0.122037136127422 -0.0755467985550705 0.563695343064757 -0.517205005492406 -0.424224330347704 -0.633430849423284 -0.517205005492406 -0.482337252313143 -0.831014784105776 1.44701175693943 2.45817659913806 2.48142176792424 1.77244411994589 1.02859871878827 1.70270861358736 1.58648276965648 1.2842955754362 0.865882537285039 0.598563096244021 -0.366111408382265 -0.447469499133879 -0.203395226879036 0.0406790453758073 0.482337252313143
MMP1428 0.184681999877824 -0.330780425127217 0.231097905288718 0.211330857316017 -0.601094806153903 -0.932192851488554 3.05630319574655 -0.414508488614672 -0.340635688663542 0.209306266528201 0.28317906647933 -0.077976844392859 0.028728311092106 0.0861849332763179 0.233930533178577 -0.0205202222086471 0.176473910994365 0.49658937744926 -0.201098177644742 -0.398092310847754 -0.0697687555094002 0.0451444888590237 0.0943930221597768 -0.824912932787614 1.33381444356206 1.47335195458086 1.07936368817484 1.2271092880771 1.43231151016357 1.16965266589289 0.824912932787614 1.21890119919364 0.816704843904155 -0.0123121333251883 -1.14502839924251 -1.25994164361093 -1.56364093229891 -1.58826519894929 -1.30098208802823
MMP1487 -0.0955383259083805 -1.22284314640229 -0.447476194529266 -0.529921247640773 -1.11432244858575 -1.33193903589457 3.99439478404136 0.859844933175424 0.324830308088493 0.210184316998437 -0.222922760452888 -0.146492099726183 0.452214742633001 0.413999412269648 0.528645403359705 0.490430072996353 1.29295201062675 0.159230543180634 -0.490430072996353 -0.605076064086409 -0.477691629541902 -0.133753656271733 0.121015212817282 0.00636922172722537 1.02544469808328 1.17830601953669 2.03178173098489 1.75153597498697 1.67510531426027 1.81522819225923 1.63688998389692 1.84070507916813 1.24199823680895 -0.171968986635085 -0.987229367719931 -1.21652134990004 -1.14009068917334 -0.834368046266522 -0.363045638451846
MMP1551 0.260582583186551 -0.520646214022763 0.113843327486232 0.0303849373551196 -0.116599565002589 -0.13421713481096 3.17917109702622 -0.123883523154262 -0.457087481982967 -0.0299029193820633 -0.277669965690587 -0.115339831902244 0.252038891934533 0.260582583186551 0.234951509430497 -0.0726213756421536 0.260582583186551 0.158058288162334 -0.6621360720314 -0.6621360720314 -0.431456408226913 -0.491262246991039 0.0128155368780271 -0.6621360720314 0.867184662079834 1.84970915606191 3.47301049394534 2.72116566376775 0.858640970827816 1.20893231216056 1.21747600341257 1.1833012384045 0.551068085755165 0.39728164321884 -0.764660367055617 -0.730485602047545 -0.593786542015256 -0.440000099478931 -0.123883523154262
MMP1607 -0.718085098400238 -0.0711176149368359 1.0086857535941 -0.451597498214341 -1.28573208677072 0.0579972492115009 4.13168800575124 0.989792973470599 0.20378090630277 0.194077053621686 -0.262004022389276 -0.13585393753518 -0.0291115580432529 0.0679269687675902 0.213484758983855 0.164965495578433 0.300819433113613 -0.514304192097468 -0.83453133057325 -0.591935013546142 -0.252300169708192 -0.184373200940602 -0.145557790216264 -0.232892464346023 1.09653535296253 2.07662447375204 2.29010923273589 1.8534358620871 1.51380101824915 1.59143183969783 1.4846894602059 1.43617019680048 1.6690626611465 -0.194077053621686 -0.485192634054215 -0.601638866227227 -0.591935013546142 -0.359042549200119 -0.359042549200119
[+] Show/hide bicluster #55 motif PSSM #1. bicluster 55 motif PSSM #1 Methanococcus maripaludis S2 23x4
POSITION A C G T
1 0 0.2 0.6 0.2
2 0 0.8 0.2 0
3 0.2 0 0.6 0.2
4 0.6 0 0 0.4
5 0.4 0 0 0.6
6 0.4 0 0.6 0
7 0 0 0.8 0.2
8 0 0 0.8 0.2
9 0 0 0.8 0.2
10 0.2 0.4 0 0.4
11 0.2 0 0.6 0.2
12 0.2 0.2 0.6 0
13 1 0 0 0
14 0.6 0 0 0.4
15 0.2 0 0.8 0
16 1 0 0 0
17 0.2 0.2 0.4 0.2
18 0.2 0 0 0.8
19 0.8 0 0 0.2
20 0 1 0 0
21 0.2 0.8 0 0
22 0.2 0 0 0.8
23 0.2 0 0.8 0 [+] Show/hide bicluster #55 motif PSSM #2. bicluster 55 motif PSSM #2 Methanococcus maripaludis S2 10x4
POSITION A C G T
1 1 0 0 0
2 0.727273 0.272727 0 0
3 0.454545 0 0 0.545455
4 0 0 0 1
5 0.181818 0 0.818182 0
6 0 0.181818 0.636364 0.181818
7 0.181818 0 0 0.818182
8 0 0.090909 0.909091 0
9 1 0 0 0
10 0.636364 0 0 0.363636 |