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[+] Show/hide bicluster #54 rows and columns.
bicluster 54
Methanococcus maripaludis S2
17x40
[+] Show/hide bicluster #54 rows (genes).
bicluster 54 genes
Methanococcus maripaludis S2
17
[+] Show/hide bicluster #54 rows (short gene names).
bicluster 54 short names
Methanococcus maripaludis S2
17
short_name
[+] Show/hide bicluster #54 rows (long gene names).
bicluster 54 long names
Methanococcus maripaludis S2
17
long_name
[+] Show/hide bicluster #54 rows (NCBI RefSeq gene IDs).
bicluster 54 NCBI RefSeq IDs
Methanococcus maripaludis S2
34
[+] Show/hide bicluster #54 gene upstream sequences.
bicluster 54 upstream sequences
Methanococcus maripaludis S2
17
upstream
[+] Show/hide bicluster #54 columns (arrays; conditions).
bicluster 54 arrays
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #54 ratios.
bicluster 54 ratios
Methanococcus maripaludis S2
17x40
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0300m
MMP0027 0.00525260671159223 -0.257377728868019 -1.4543934319557 -0.782544872112135 -1.0042280183265 -1.94677667202932 -2.15549404221688 4.96240065300614 0.866680107412717 0.068283887250699 0.162830808059359 -0.0892943140970677 -0.14182038121299 0.14182038121299 0.793143613450426 -0.183841234905728 -0.467481997331708 -0.320409009407126 0.173336021482543 0.351924649676679 0.456976783908524 1.04526873560685 1.27638343091691 1.59153983361244 0.467481997331708 0.667081052372212 1.07678437587641 1.47598248595741 1.59153983361244 1.43396163226468 1.51800333965015 0.0577786738275145 -0.204851661752097 -0.173336021482543 -0.320409009407126 -0.383440289946232 -0.215356875175281 -0.0472734604043299 -0.152325594636174 -0.635565412102659
MMP0070 -0.216903560198067 0.0697190014922359 -1.92111260166623 -0.0995132695953839 -1.19937542491892 -1.84042728152572 -1.28752297119959 3.563740127298 0.116198335820393 -0.0387327786067975 0.364088118903898 0.286622561690303 0.209157004476707 0.441553676117493 -0.0154931114427191 -0.247889783083505 -0.867614240792268 -0.743669349250515 0.185917337312629 0.402820897510696 0.0464793343281572 1.16198335820393 0.937333242284504 0.945079798005863 1.20846269253209 1.60353703432142 1.60353703432142 1.94438548606124 1.92889237461852 1.68874914725638 1.19296958108937 -0.0232396671640784 -0.898600463677706 -0.921840130841784 -1.23944891541752 -1.23170235969617 -0.952826353727222 -0.697190014922358 -0.580991679101965 -0.472539899002931
MMP0215 -0.848275721401275 -0.525328111730739 -1.8621815403146 -0.616832828081307 -0.928186209497699 -1.19961584286976 -1.79004658861475 3.0916685213781 -0.0387537131604643 0.542551984246501 1.06788009597724 1.02051444655889 0.62436537869637 0.0990372669656311 0.0129179043868215 -0.0129179043868214 -0.559775856762263 -0.529634079859679 0.490880366699215 0.943007020237966 -0.0301417769025834 0.861193625788097 0.688954900630477 0.568387793020144 0.843969753272335 1.19705913984545 1.21858898049016 1.56737239893434 1.80420064602606 1.83003645479971 2.02811098873097 0.163626788899738 -0.568387793020144 -0.693260868759418 -0.874111530174918 -0.912865243335382 -0.839663785143394 -0.701872805017299 -0.809522008240811 -0.882723466432799
MMP0455 0.968770090682067 -0.65793476746857 -2.03231405791312 0.0501031105793311 -0.883421124496477 -1.65927864898442 -2.38289249543973 3.14963441143323 1.18635481693152 0.295293557052823 0.119153540565174 -0.0673476533629245 -0.523239460742721 0.0466252984820247 0.233126492410123 -0.481794750980921 -1.09310421996747 -0.865158316277568 -0.0569864759224746 -0.0466252984820247 0.160598250326974 0.316015911933723 0.357460621695522 0.492155928421371 1.08274304252702 1.16563246205062 1.04129833276522 1.31068894621691 1.12418775228882 1.16563246205062 1.47646778526411 -0.896241848598918 -0.63721241258767 -0.906603026039368 -1.23816070413377 -1.24852188157422 -1.06202068764612 -0.896241848598918 -0.58540652538542 -0.792630074194419
MMP0482 -0.502579904241023 -0.543887841575901 -1.89964273722888 -1.59674861031446 -1.68493297393802 -1.83042163593626 -2.40719505688796 2.7722634126026 -0.158347093117035 0.0344232811123988 0.371771436013907 0.681580966025496 0.447502654461184 0.0757312184472773 0.364886779791427 0.240962967786792 -0.158347093117035 -0.165231749339514 -0.0206539686674393 0.330463498679028 -0.192770374229433 1.12908362048668 1.44577780672075 1.21169949515644 0.413079373348786 0.537003185353421 0.839928059142531 1.1566222453766 1.17039155782156 1.19793018271148 0.86058202780997 -0.0137693124449595 -0.488810591796063 -0.419964029571265 -0.619619060023178 -0.681580966025496 -0.523233872908462 -0.667811653580537 -0.771081496917733 -0.433733342016225
MMP0483 -0.741910486693747 -0.407407492693098 -1.80478446981697 -1.22113823379774 -1.37747435775283 -2.41192629905881 -2.10390154997727 2.71928067840938 0.330214494077564 0.132943497615642 0.570370489770337 0.767641486232258 0.227290495923518 0.0300194994615967 -0.00428849992308524 -0.210136496231177 -0.570370489770337 -0.390253493000757 0.0471734991539377 0.0729044986924491 0.00428849992308524 1.55672547207994 1.36803147546419 1.35087747577185 0.681871487770553 0.836257485001622 1.38518547515653 1.72826546900335 1.61676447100314 1.87407446638825 1.43664747423356 -0.201559496385006 -0.561793489924167 -0.536062490385655 -0.79337248577077 -0.904873483770986 -0.861988484540134 -0.947758483001838 -0.922027483463327 -0.561793489924167
MMP0612 -0.017721605455334 -0.272912724012144 -1.82079844158362 -1.22714915717731 -1.5048754520178 -1.57924165284314 -1.56643828910661 3.95191809451455 0.917979162586303 -0.00354432109106681 0.017721605455334 -0.528103842568954 -0.0956966694588038 0.26582408183001 0.42177420983695 -0.102785311640937 -0.49974927384042 -0.365065072379881 0.287090008376411 0.216203586555075 0.655699401847359 1.15190435459671 0.528103842568954 0.393419641108415 0.988865584407639 1.11646114368604 0.910890520404169 1.49924782152126 1.32912040915005 1.04557472186471 1.15899299677885 -0.0318988898196012 -0.350887788015614 -0.315444577104946 -0.698231254940161 -0.648610759665225 -0.372153714562015 -0.0815193850945365 -0.0815193850945365 -0.584812980026023
MMP0621 -0.235377776622929 -0.387468032286976 -1.50420322038599 -0.934631832471453 -0.995458787594552 -1.31910614913551 -1.10871901044809 4.81384237363557 0.293316921637804 0.329528887272101 0.626467005473335 0.510588715443585 0.329528887272101 -0.11949948659318 0.264347349130367 -0.351256066652679 -0.727860509249366 -0.546800681077882 -0.0181059828171484 0.0832875209588827 0.0832875209588827 1.19861606249523 1.07549537933862 0.901677944293991 0.937889909928288 0.727860509249366 0.735102902376226 1.11894973809977 1.41588785630101 1.45934221506216 1.30000956627126 -0.105014700339461 -0.242620169749789 -0.322286494145242 -0.423679997921273 -0.611982219219616 -0.45264957042871 -0.45989196355557 -0.56852786045846 -0.735102902376226
MMP0638 -0.73390058443382 -0.796694217326553 -1.56445164511656 -0.860205432308372 -1.51601330388545 -1.88060042837128 -2.01445564545849 3.37224225176 0.231551521291954 0.208003908957179 0.333591174742645 0.239400725403546 0.153059480176037 0.349289582965829 0.0981150513948957 -0.0745674390601207 -0.678956155652678 -0.914432279000428 -0.00392460205579583 0.184456296622404 0.655408543317903 0.796694217326553 0.859487850219287 1.06356715712067 0.718202176210637 0.883035462554062 1.14990840234818 1.76214632305233 1.81709075183347 1.55806701615094 1.45602736270025 0.0981150513948957 -0.35713878707742 -0.553368889867212 -0.561218093978804 -0.631860930983128 -0.600464114536762 -0.349289582965829 -0.380686399412195 -0.68680535976427
MMP0672 -0.0946117148835572 0.0509447695526846 -1.50584950070254 -0.759867321600302 -1.36848362520201 -1.27712544708116 -2.38766397218528 2.30446532669072 0.764171543290269 0.211056902432551 0.371169035312416 0.31294644153792 0.516725519748658 0.473058574417786 -0.211056902432551 -0.822394137064766 -0.604059410410403 -0.443947277530537 0.0655004179963088 -0.13827866021443 0.31294644153792 1.31728618414799 0.778727191733893 0.560392465079531 0.429391629086913 0.735060246403021 1.05528451216275 2.07417990321645 1.88495647344933 1.87040082500571 1.40462007480973 -0.109167363327181 -0.327502089981544 -0.400280332199665 -0.618615058854028 -0.502169871305034 -0.356613386868792 -0.298390793094296 -0.371169035312416 -0.371169035312416
MMP0693 -0.626840434919434 0.180943630698393 -1.72271950494399 -0.10293392663947 -0.858114092252022 -1.82125087271812 -1.83126935966262 3.55712200696852 -0.0258490900997705 0.168019085648508 0.478208166845754 0.3941986240215 0.200330448273221 -0.0258490900997705 -0.439434531696098 -0.12278317797391 -0.0516981801995409 -0.084009542824254 0.878869063392196 1.05335042156565 -0.116320905448967 1.00811451389105 0.723774522793573 0.775472702993114 0.678538615118975 1.2730676874137 1.84820994213359 2.16486129585578 2.10023857060635 1.98391766515738 1.98391766515738 0.400660896546442 -0.626840434919434 -0.639764979969319 -0.710849977743688 -0.84009542824254 -0.775472702993114 -0.626840434919434 -0.704387705218745 -0.878869063392196
MMP0863 0.0357012283075782 0.00324556620977984 -2.1578160317454 -0.335003287215712 -0.935084533616509 -1.68826368841645 -1.4011196308794 4.44923290796247 -0.236926333313928 0.223944068474809 0.288855392670405 0.39920464380292 0.366748981705122 0.126577082181414 0.120085949761854 -0.113594817342294 -0.678323337843986 -0.613412013648389 0.275873127831286 0.360257849285562 -0.00324556620977979 1.13270260721316 0.730252397200463 0.613412013648389 0.58744748397015 0.970424296724171 1.27550752044348 1.34690997705863 1.30796318254127 1.53515281722586 1.39234790399555 -0.165523876698772 -1.05480901817845 -1.23006959350656 -1.05480901817845 -0.970424296724171 -0.983406561563291 -0.7886725889765 -1.0937558126958 -0.730252397200463
MMP0903 -0.439105600216642 -0.466765795505879 -0.857508201188928 -0.326586657224309 -0.461997150177819 -1.12198019725518 -1.39384200865074 3.73354245732448 -0.314634721415074 0.342294916704311 0.522086186084353 0.293889574948146 0.5566614301959 0.0242026708780824 0.197078891435816 0.0518628661673197 -0.508256088439735 -0.390700258460477 -0.134843452035032 0.114098305568104 -0.563576479018209 0.96464931071215 1.18593087302605 0.992309506001387 0.784858041332107 0.86092357837751 1.20667601949298 1.7460498276331 1.46944787474073 1.49710807002997 1.32423184947223 0.0449478173450104 -0.35612501434893 -0.411445404927405 -0.480595893150498 -0.5566614301959 -0.515171137262044 -0.826348334265963 -0.722622601931324 -0.577406576662828
MMP1234 0.0941265979782272 -0.17256542962675 -1.28158870337726 -0.638858053831913 -0.881593952360984 -1.6258581003183 -2.014046630589 3.92318363779364 -0.094126597978227 -0.180409312791602 0.251004261275272 0.227472611780716 0.117658247472784 0.48632075622084 0.407881924572318 0.48632075622084 -0.00784388316485227 0.0941265979782272 0.211784845451011 0.109814364307932 0.00784388316485227 0.823607732309487 0.909890447122862 0.964797629276828 0.894202680793158 0.83145161547434 0.800076082814931 1.08245587674961 1.09814364307932 1.16089470839813 0.964797629276828 -0.188253195956454 -0.886358797628305 -0.886358797628305 -0.862827148133749 -0.878514914463453 -0.611822886858476 -0.517696288880249 -0.603979003693624 -0.400038041407465
MMP1552 -0.751596676396489 -0.20877685455458 -0.668530597958329 -1.11082407204461 -1.69955361103779 -1.08332803503366 -1.5455757745477 4.04240552957921 0.20877685455458 -0.146143798188206 0.167021483643664 0.177460326371393 0.240093382737767 0.501064450930992 1.47187682460979 -0.281848753648683 -0.354920652742786 -0.156582640915935 0.302726439104141 0.574136350025095 0.542819821841908 0.490625608203263 0.375798338198244 0.396676023653702 0.782913204579675 0.83510741821832 0.751596676396489 1.25266112732748 1.13783385732246 1.50319335279298 1.38836608278796 -0.323604124559599 -0.897740474584694 -0.824668575490591 -0.897740474584694 -0.876862789129236 -0.595014035480553 -0.511503293658721 -0.584575192752824 -0.866423946401507
MMP1605 -0.262306458699264 -0.427973695772483 -2.31588309828479 -0.752710343350186 -1.40047672294335 -1.62073945073428 -1.61658355003627 4.28119356849933 0.842141788455532 0.161065369376741 0.308325135664047 0.0322130738753482 -0.0322130738753482 0.335936341842917 0.823734317669619 -0.639659609810486 -0.483196108130223 -0.40956622498657 0.326732606449961 0.43717743116544 0.648863345203443 0.750104434525966 0.455584901951353 0.768511905311879 1.11825385024423 1.16427252720901 0.888160465420315 1.41277338281884 1.29312482271041 1.05382770249353 1.68888544460754 -0.0966392216260446 -0.584437197452746 -0.648863345203443 -0.860549259241445 -0.943382877778055 -0.648863345203443 -0.391158754200657 -0.455584901951353 -0.851345523848489
MMP1641 -0.0390114972822334 0.0390114972822334 -1.58453263789429 -0.560152502328393 -1.34580140130683 -1.49343561993035 -2.39903732711346 4.94710707835147 1.26508712615243 -0.183911344330529 0.00557307104031906 -0.0390114972822334 0.0278653552015953 0.730072306281796 1.00872585829775 0.284226623056272 -0.00557307104031906 -0.0167192131209572 0.328811191378824 0.507149464669034 0.70778002212052 0.88611829541073 0.808095300846263 0.585172459233501 0.819241442926901 0.964141289975196 0.952995147894558 1.5214483940071 1.71093280937795 1.34311012071689 1.39884083112008 -0.1170344918467 -0.47371103842712 -0.440272612185205 -0.607464743394777 -0.796949158765625 -0.417980328023929 -0.284226623056272 -0.273080480975634 -0.574026317152863
[+] Show/hide bicluster #54 motif PSSM #1. bicluster 54 motif PSSM #1 Methanococcus maripaludis S2 10x4
POSITION A C G T
1 0.072022 0.327978 0.527978 0.072022
2 0.6 0.4 0 0
3 1 0 0 0
4 0.9 0 0.1 0
5 0 0.4 0.2 0.4
6 0 1 0 0
7 0.3 0.2 0 0.5
8 0 0.7 0.3 0
9 0 1 0 0
10 0.4 0.6 0 0 [+] Show/hide bicluster #54 motif PSSM #2. bicluster 54 motif PSSM #2 Methanococcus maripaludis S2 10x4
POSITION A C G T
1 0 0 1 0
2 0 0 1 0
3 0.2 0.8 0 0
4 0.2 0 0.2 0.6
5 0 0 0 1
6 0 0 1 0
7 0.4 0.6 0 0
8 0.8 0.2 0 0
9 0 0.2 0.8 0
10 1 0 0 0 |