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bicluster 51
Methanococcus maripaludis S2
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bicluster 51 genes
Methanococcus maripaludis S2
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bicluster 51 short names
Methanococcus maripaludis S2
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bicluster 51 long names
Methanococcus maripaludis S2
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long_name
[+] Show/hide bicluster #51 rows (NCBI RefSeq gene IDs).
bicluster 51 NCBI RefSeq IDs
Methanococcus maripaludis S2
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bicluster 51 upstream sequences
Methanococcus maripaludis S2
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upstream
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bicluster 51 arrays
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bicluster 51 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_minus30m
MMP0046 0.296963500386953 1.71952546064892 0.258620319460043 0.209459767836634 -2.90386746161183 0.338659112790108 -0.0366013988382837 0.630528399612191 -0.113043354910734 -0.293724341991071 -0.210333117184761 -0.926107796772249 -0.391014104265098 0.0328912885003073 1.54088260374773 1.90224457790841 1.58952748488475 1.1725713608532 0.700021086950782 0.428999606330277 0.137130319508194 0.0884854383711803 -0.0643984737737202 -0.821868765764363 -0.745426809691913 -0.696781928554899 -1.01644829031242 -0.68983265982104 -0.995600484110841 -0.474405329071407 -0.926107796772249 0.290014231653094 2.05512849005331 2.04817922131945 0.290014231653094 -0.279825804523352
MMP0074 0.446210198228218 3.21880555491114 1.12934205722209 0.0111805798634004 -2.95600684595121 1.13039916884482 1.07090447574772 0.27764190111978 0.515620673508163 -0.267726118936931 -0.396631287313971 -0.297473465485478 -0.228062990205533 -1.3882095055989 0.505704891325313 2.31037724860388 2.08231425839835 1.33863059468465 0.783346792445093 0.307389247668328 0.495789109142464 0.257810336754081 0.475957544776765 -0.793262574627942 -0.0495789109142464 -0.525536455691012 -0.475957544776765 -0.0793262574627942 -0.376799722948273 0.00991578218284929 -0.981662436102079 0.247894554571232 1.49728310961024 1.26922011940471 -0.327220812034026 -0.396631287313971
MMP0091 0.612288439922912 0.226506094882287 -0.342957207759207 -0.794342317530741 0.936511254189651 -1.70930522811813 -0.0255120183301213 0.778116559068701 0.867408623224126 0.0510240366602427 -0.267876192466274 0.216852155806031 -1.53072109980728 -1.02048073320485 1.54347710897234 2.01544944807959 1.90064536559404 1.17355284318558 0 -0.918432659884368 -0.242364174136153 -0.293388210796395 -2.04096146640971 -1.23733288901089 -0.586776421592791 0.0637800458253034 0.663312476583155 0.56126440326267 0.676068485748216 -0.688824494913276 -1.14804082485546 -0.127560091650607 2.28332564054586 2.00269343891453 -0.727092522408458 -0.57402041242773
MMP0116 0.777086814269576 -0.433194168527064 1.26270799059965 1.02297803106444 1.24889541679473 -1.13605729089325 -0.451680537826876 0.605992626002982 1.22815331060878 0.403790403506097 0.123818095433488 0.466006471966677 -0.0317220757179616 0.574884591772692 0.512668523312112 1.05705912234219 0.885964934075591 1.05705912234219 0.248250232354648 -0.56055865763289 -0.0628301099482516 0.217142198124358 -0.0783841270633965 -0.68499079455405 -0.265032332445136 -2.73812105375319 -0.000614041487671692 0.0927100612031981 -0.949409085511515 -0.420572503596586 -0.436126520711731 -0.327248400905716 -0.498342589172311 -0.59166669186318 -1.10494925666296 -0.358356435136006
MMP0141 0.00321280035782936 -0.260462989904127 0.00278833181422957 -0.00278833181422956 -3.21232222047344 -1.09740649784456 -0.133002459320684 0.373718306683386 0.362821085909105 -0.19293717357923 -0.481713524097679 -0.285563550160619 -1.09740649784456 -0.830424588874673 1.56696398146716 2.24804027985973 2.03554447476125 1.45799177372435 0.542625228684743 -0.383638537129149 -0.122105238546403 -0.383638537129149 -1.14644399132882 -0.274666329386338 0.232054436617732 -0.645171835711895 -0.874013471971797 -0.786835705777549 -0.6996579395833 -0.955742627778906 -0.318255212483463 0.357372475521964 1.40350566985295 1.45799177372435 -0.0785163554492787 0.0740447353906564
MMP0142 0.210910437925696 -0.366722490317435 -0.0554875441873278 -0.105427528347074 -3.66011714056425 -1.23519822555304 0.0825176126635658 0.481211122688076 0.454181054211839 -0.147237969384457 -0.410781137027778 -0.268873277527528 -0.877049818242884 -0.539173962289909 1.73135178971408 2.42737605297721 2.50170874128687 1.58944393021384 0.562301328116791 -0.512143893813671 -0.187783072098814 -0.38375106855154 -0.971655057909717 0.0554875441873278 0.57581636235491 -0.667566787552039 -0.572961547885206 -0.539173962289909 -0.464841273980254 -0.735141958742634 0.109547681139804 0.508241191164315 1.45429358783265 1.40699096799923 0.0622450613063873 0.373090848783124
MMP0268 -0.990367131547073 -0.184194162166422 -0.314034051330983 -1.02480991602113 -3.06268316086416 -1.47166704594378 -0.286928795121115 0.157348048937385 -0.157348048937385 -0.435021076473948 -0.416509541304844 -0.39799800613574 -4.10030503995657 -0.472044146812156 1.17548248323811 1.78636314381855 1.24952862391453 0.916320990870656 0.231394189613802 -0.62013642816499 0.120324978599177 0.249905724782906 -0.39799800613574 -0.00925576758455209 0.527578752319469 -0.17585958410649 0.39799800613574 0.286928795121115 0.138836513768281 -0.212882654444698 0.286928795121115 -0.0277673027536562 0.990367131547073 1.08292480739259 -1.49017858111289 0.157348048937385
MMP0286 -1.37490503204633 1.13028529205816 1.11527979764677 0.900915670022877 -1.39146129882426 0.180764406603701 1.29821710197204 1.29821710197204 1.36394961346429 0.629936568467444 0.246496918095956 0.388917359662509 -0.0164331278730638 -0.509426964064977 -0.257452336677999 1.00242080025689 0.421783615408637 0.268407755260041 0.0164331278730638 -0.345095685334339 0.104076476529404 0.312229429588211 -0.936688288764634 0.213630662349829 -0.246496918095956 -1.42968212495655 -0.728535335705827 -0.564204056975189 -0.783312428616039 -0.202675243767786 0.180764406603701 0.0492993836191913 0.750446172869912 0.0712102207832764 -0.202675243767786 -0.180764406603701
MMP0440 0.264119228134595 0.856027959168425 0.370702446031758 0.428571017927863 -2.20305552935744 -1.15177766495808 0.667105266937895 0.264119228134595 0.307685286383601 -0.313131043664726 -0.465612247536245 -0.340359830070355 -0.721562839749152 -0.296793771821349 1.40228249988986 1.62555854841601 1.26069281058059 0.961176160118681 0.0898549951385737 -0.356697101913732 -0.324022558226978 -0.443829218411742 -0.694334053343523 -0.895827072745173 -1.40228249988986 -1.62555854841601 -1.36960795620311 -1.41861977173324 -1.35871644164086 -1.44584855813887 -0.863152529058419 0.754237383435906 1.3478249270786 1.57110097560476 0.443829218411742 0.0136143932028142
MMP0441 -0.0102959949340388 0.927024309653084 0.551419804289268 0.210842530551212 -2.74434553636392 -0.638836669973085 0.576688271837963 0.150735087100758 0.150735087100758 -0.244050791436163 -0.472611036904907 -0.353136363137155 -0.654420323073227 -0.332358159003633 1.65196033574774 1.45456739647928 1.07017062000912 0.898750435907557 0.368906230502741 -0.332358159003633 -0.238856240402783 -0.186910730068977 -0.384303669337438 -0.908953323708873 -1.66735777458243 -1.50113214151426 -1.65696867251567 -1.63619046838215 -1.47515938634735 -1.57385585598158 -0.820645956141404 0.73771935387276 1.314314518578 1.40262188614547 0.420851740836547 0.129956882967236
MMP0442 0.356221891057452 0.768148833835418 0.490225989599678 0.407369091702872 -2.32567862983442 -0.754414477912064 0.493658498588796 0.489943995682544 0.582806568338858 -0.0895184576928555 -0.304959626255504 -0.104376469317866 -0.37182067856805 -0.434967227974343 0.939398847339103 1.26256060018308 1.12140948974548 0.920826332807841 0.374794405588714 -0.223240562317948 -0.215811556505442 -0.2269550652242 -0.828704536037115 -0.260385591380473 -1.64960967831893 -2.00620195731918 -1.80190429747529 -1.8167623091003 -1.66446768994394 -1.67189669575645 -0.278958105911736 0.723957678776455 1.63772539371458 1.71944445765214 0.367365399776209 -0.0672314402553401
MMP0443 0.402909305670477 0.932205904876841 0.628872015521134 0.519198106976258 -1.04787442350551 -0.840027892011088 0.220459808763091 0.273674245361078 0.520741272423163 -0.0608164989691285 -0.35729693144363 0 -0.589159833763433 -0.56635364665001 0.916048515722499 1.27334544716613 1.08709491907317 0.969262952320486 0.380103118557053 -0.319286619587925 -0.182449496907386 -0.444720648711752 -0.843828923196658 -0.395307243299336 -1.88531146804298 -1.97273518531111 -2.3224300543836 -2.42885892757957 -1.99174034123896 -1.81689290670272 -0.402909305670477 0.581557771392292 1.60783619149634 1.71806609587788 0.380103118557053 -0.201454652835238
MMP0444 0.114790600558705 0.961463466600755 0.607543278048917 0.450407077438045 -0.790435400148297 -0.400760166862848 0.348399542046596 0.420898868715252 0.493398195383908 0.122846081299667 -0.27590021537794 -0.187289927227361 -0.437009830197175 -0.392704686121886 0.956588337989209 1.3795010768897 1.41172299985355 0.972699299471132 0.396732426492367 -0.195345407968323 -0.151040263893033 -0.0745131968538963 -0.77936776168805 -0.336316320935154 -1.8225525176426 -2.26157621802501 -1.91921828653414 -2.05616145913049 -2.02393953616664 -2.06421693987145 -0.32020535945323 0.718951656130837 1.68560934504625 1.73394222949202 0.360482763158039 -0.199373148338804
MMP0670 2.24016229061485 0.148519411171557 -1.37144666897828 -0.538929799003155 -1.62543094236687 0.0538870654099792 0.207850109438491 0.300227935855598 -0.0769815220142559 -0.323322392459875 -0.307926088057024 -0.38490761007128 -0.300227935855598 -0.469587284286961 1.33947848304805 2.70205142270038 2.01691587677351 1.28559141763807 0.708230002531155 0.531172501898366 0.631248480516899 0.423398371078408 0.215548261639917 -0.415700218876982 0.484983588689812 -0.169359348431363 0.0153963044028512 0.277133479251321 0.269435327049896 0.569663262905494 -0.484983588689812 0.484983588689812 1.85525468054357 2.59427729188043 -0.377209457869854 -0.0153963044028512
MMP0671 2.08216000838923 0.453749005808963 -1.24062454768593 -1.17244290692725 -2.87770160353439 0.182785038904398 0.437094658249647 0.0635774048363123 0.0556302292317733 -0.127154809672625 -0.238415268136171 -0.349675726599718 0.0317887024181562 -0.572196643526811 1.37486137958525 2.16163176443462 1.62122382332596 1.25565374551717 0.540407941108655 0.294045497367944 0.588090994735889 0.286098321763405 0.0556302292317733 -0.214573741322554 0.468883360667803 -0.103313282859008 2.48746596422072 -0.103313282859008 -0.150996336486242 0.0476830536272343 -0.33378137539064 0.214573741322554 1.29538962353986 1.68480122816228 -0.365570077808796 -0.0317887024181562
MMP0694 0.203221170986045 0.810855459340039 -0.00167799488233095 -0.116629307462462 -4.24764774692756 -0.70157904513914 0.0574239797620817 0.284696071964142 0.357594667576124 -0.0969495168279973 -0.349950525128404 -0.448578036838733 -1.32336118418251 -0.817359167581699 0.923630821739747 1.37388685346081 1.21093705150462 1.02654648613313 0.464798484652568 0.0917292012265438 0.0145424529315043 -0.221305944636672 -0.778765793434179 -0.590087075379638 -1.25046258857053 -1.22044551978913 -1.25903889393665 -1.19471660369078 -1.10037724466351 -1.06178387051599 -0.6243922968441 0.198933018302987 1.0608517075976 0.923630821739747 0.070288437811255 -0.341374219762289
MMP0695 -0.102740928546344 0.377134236040502 0.267236388110411 -0.500399089738188 -3.06536961797919 -1.4041260234667 0.938367147389942 1.08905384259125 0.856174404552867 0.130138509492036 -0.130138509492036 -0.0342469761821147 0.102740928546344 -0.0753433476006524 2.26714982325599 2.3904389375116 2.00687280427192 2.17125828994607 0.97946351880848 -0.267126414220494 0.198632461856265 -0.198632461856265 -1.4041260234667 0.0479457666549606 -0.321921576111878 -1.00686109975417 -0.568499804623104 -0.691788918878716 -0.267126414220494 -0.952065937862788 0.0753433476006524 0.0342469761821147 0.952065937862788 0.51370464273172 -0.0616445571278065 -0.609596176041641
MMP0884 0.540170998120223 0.586334409103897 0.527427477578778 -0.0960042042034935 -1.01519777135147 -1.47782631561193 -0.203838112498197 0.356716696871845 -0.0101919056249099 0.214030018123107 0.0101919056249099 0.142686678748738 -0.326140979997116 -0.927463411866798 0.540170998120223 -0.468827658745854 -0.254797640622747 0.417868130621305 0.071343339374369 -0.489211469995674 -0.0305757168747296 -0.295565263122386 -1.82435110685887 -0.0815352449992791 0.0101919056249099 -0.142686678748738 -0.611514337494592 -0.529979092495313 -0.356716696871846 -1.08034199624045 0.0509595281245493 -0.529979092495313 -0.448443847496034 -0.417868130621305 0.0815352449992789 0.183454301248378
MMP0901 0.519048553688405 1.16101372204374 -0.313197330431017 -0.290429591882566 -1.89510871105738 -0.415238842950724 0.215034400813768 0.467143698319565 0.830477685901449 0.118639669414493 -0.0963947313992753 -0.037074896692029 -0.548708471042028 -0.155714566106522 0.926872417300724 1.74993512386377 1.77218006187898 1.41626105363551 0.533878512365217 0.037074896692029 0.400408884273913 0.0963947313992753 -0.0593198347072463 -1.36435619826667 -1.35694121892826 -0.837892665239854 -1.24571652885217 -1.16415175612971 -0.949117355315941 -0.919457437962318 -1.35694121892826 0.237279338828985 1.89823471063188 2.22449380152174 -0.28176921485942 -0.459728718981159
MMP1064 0.255463278148622 -2.15843014857176 -2.07026737479382 -2.87462681967272 -0.397738040205639 -0.754224916438787 0.863709178502482 1.10700753864403 1.13133737465818 0.298040491173392 0.103401803060156 0.510926556297243 -0.0547421310318475 -0.389277376226471 1.45370770184573 1.64834638995896 0.754224916438787 0.815049506474173 0.334535245194624 -0.298040491173392 -0.0729895080424634 -0.431854589251241 -1.13133737465818 0.553503769322013 0.322370327187546 -1.19824442369711 -1.0705127846228 -1.07659524362633 -0.723812621421094 -0.845461801491867 0.693400326403402 0.237215901138006 1.04618294860864 1.00968819458741 -0.541338851314936 0.291958032169853
MMP1380 0.408328973713158 -0.224062380430564 0.0323608764822437 -0.602636654349909 -0.573870133357426 -0.323260437522916 0.408328973713158 0.402657737967141 0.323260437522916 0.0453698859681287 -0.215506958348611 -0.102082243428289 -0.0623835932061768 0.328931673268933 1.763754317011 2.86397405173812 3.26096055395925 2.52369990697715 1.57660353739247 1.10589097047314 0.799644240188267 0.470712566919334 0.226849429840643 -0.300575494538852 -0.226849429840643 -0.907397719362573 -0.759945589966154 -0.618164696315753 -0.589808517585672 -0.408328973713158 -0.272219315808772 0.141780893650402 0.618164696315753 0.521753688633479 -0.351616616252997 0.0396986502221126
MMP1381 0.468674462048376 0.502161846337798 0.1832746065976 -0.0813594514390028 -0.0280650941140447 -0.147116943739364 0.139544572748032 0.341269343609533 0.155470212552887 -0.221436596162022 -0.423161367023523 -0.396618634015431 -0.163042583544219 0.0333736407156631 1.94975896389992 3.01677683082523 3.45738619875956 2.63987002211032 1.54630942217692 0.760644525137391 0.5907710338856 0.128927479544795 0.0280650941140447 -0.608960498080169 -0.731057069917393 -0.985867306795079 -0.943398933982131 -0.954016027185368 -0.847845095152999 -0.789451082535196 -0.662045964096354 0.256332597983638 1.05792313482802 1.06854022803126 -0.19489386315393 -0.428469913625142
MMP1399 1.01930269165659 -0.346251956878175 -0.273717145144866 -0.776120216630227 -2.00299745015983 -1.00640012593942 0.141928222888893 0.2774051629192 0.916082165919218 -0.0580615457272744 -0.361271840080818 0.0129025657171721 -0.367723122939404 -0.212892334333339 1.41283094603034 2.1740823233435 1.94828742329298 1.7547489375354 0.554810325838399 -0.561261608696985 -0.109671808595963 -0.264502597202028 -0.838666771616185 -0.303210294353544 -0.851569337333357 -0.696738548727292 -1.1547796316869 -1.29670785457579 -1.03865654023235 -1.30961042029297 -0.24514874862627 0.851569337333357 2.41277978911118 2.50309774913138 0.283856445777786 -0.0129025657171721
MMP1431 1.01402586131114 -0.600540030122599 -1.30097007607059 -2.34315884761033 1.23200442325214 0 0 0.205545782698203 -0.123327469618922 -1.00032280913125 -1.05513501785078 -0.863292287332453 -0.493309878475687 0.822183130792812 1.08254112221054 1.97323951390275 1.54844489632646 1.00032280913126 0.397388513216526 -0.137030521798802 0.0411091565396406 0.0685152608994011 0.137030521798802 -1.13735333093006 0.164436626158563 -0.68515260899401 0.411091565396406 0.465903774115927 0.63034040027449 0.0959213652591615 -0.959213652591614 -0.164436626158562 1.95953646172287 2.3569249749394 -0.959213652591614 -0.739964817713531
MMP1432 0.508520754863563 0.543999227230461 0.219502661895659 0.352373899938629 -2.52272180910687 -0.662174508131689 0.424377032835779 0.958506746577362 1.2950816346885 0.278040124961372 -0.106094258208945 -0.0658516085434829 -0.417060187442058 -0.186579557539868 1.11216049984549 1.77067658528032 1.52190384189383 1.03533362321143 0.439010723623219 -0.00731684539372033 0.0365842269686016 0.106094258208945 -0.369500692382876 -0.545104981832164 -0.954848323880502 -1.84384503921752 -1.52190384189383 -1.47068592413778 -0.984115705455383 -1.25118056232618 -0.545104981832164 0.373159115079736 1.78896869876462 1.90603822506414 -0.0841437220277837 -0.248772743386491
MMP1444 0.154267691921081 1.09899962766832 0.370218985774355 0.203510122211754 -1.96913616879321 -0.420967769479559 0.405279529623178 0.603997234470671 0.43142659605048 -0.0810559059246356 -0.321608917055812 -0.29023243734305 -0.29546185062851 -0.222250064632065 1.68648578456097 2.28263889910345 1.82245052998293 1.19492093572769 0.572620754757909 -0.0915147324955563 -0.00784411992819054 -0.138579452064699 -0.499408968761464 -0.279773610772129 -0.802714939318165 -1.22106800215499 -1.34134450772058 -1.34657392100604 -1.21060917558407 -1.10079149658941 -0.342526570197653 0.541244275045147 2.1832800466797 2.44998012423818 0.384361876481336 -0.0862853192100959
MMP1590 -0.0389894319693827 1.97089421709853 0.0373427211080422 0.77301717318403 -1.56733834354963 0.319713342148938 0.319713342148938 -0.538054161177481 0.0545852047571356 -0.678416116267259 -0.631628797904 -0.943544253659061 -0.257330250997926 0.912352708083555 0.257330250997926 0.912352708083555 0.553649933965234 0.163755614271407 -0.00779788639387654 -0.38209643329995 0.0389894319693825 0.00779788639387633 1.9260779392875 -0.319713342148938 -0.335309114936691 -0.974735799234567 -1.02152311759783 0.0389894319693825 0.0233936591816294 -0.179351387059161 -0.475671070026469 -0.0545852047571358 0.943544253659061 0.600437252328493 0.00779788639387633 -0.694011889055012
MMP1594 0.519654791040717 0.0400009323478705 -0.270627692835432 -0.783500127710842 -0.181238160408582 0.786905826433085 0.148472797440205 0.356334713856491 -0.712669427712983 -0.801753106177105 -1.21747693900968 -1.24717149849772 -0.133625517696184 1.11354598080154 0.890836784641228 0.430571112576594 1.05415686182545 -0.608738469504839 0.0148472797440205 -0.846294945409167 -0.564196630272778 -0.341487434112471 0.400876553088553 -0.519654791040716 0.163320077184225 -0.103930958208143 -0.356334713856491 -0.593891189760819 -0.356334713856491 -0.62358574924886 -0.475112951808655 -0.564196630272778 0.237556475904328 0.653280308736901 0.193014636672266 -0.460265672064634
[+] Show/hide bicluster #51 motif PSSM #1. bicluster 51 motif PSSM #1 Methanococcus maripaludis S2 12x4
POSITION A C G T
1 0 1 0 0
2 0 0 0 1
3 0 0 1 0
4 0 1 0 0
5 0 0 0 1
6 0.5 0 0.5 0
7 0 1 0 0
8 0 0 0 1
9 0 0 1 0
10 1 0 0 0
11 0 0 1 0
12 0 0 1 0 [+] Show/hide bicluster #51 motif PSSM #2. bicluster 51 motif PSSM #2 Methanococcus maripaludis S2 10x4
POSITION A C G T
1 0 0 1 0
2 0 0.5 0.5 0
3 1 0 0 0
4 0 1 0 0
5 0 1 0 0
6 0 0 0 1
7 0 0 1 0
8 0 0 0 1
9 0 0 0.5 0.5
10 0 0 1 0 |