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[+] Show/hide bicluster #50 rows and columns.
bicluster 50
Methanococcus maripaludis S2
21x37
[+] Show/hide bicluster #50 rows (genes).
bicluster 50 genes
Methanococcus maripaludis S2
21
[+] Show/hide bicluster #50 rows (short gene names).
bicluster 50 short names
Methanococcus maripaludis S2
21
short_name
[+] Show/hide bicluster #50 rows (long gene names).
bicluster 50 long names
Methanococcus maripaludis S2
21
long_name
[+] Show/hide bicluster #50 rows (NCBI RefSeq gene IDs).
bicluster 50 NCBI RefSeq IDs
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #50 gene upstream sequences.
bicluster 50 upstream sequences
Methanococcus maripaludis S2
21
upstream
[+] Show/hide bicluster #50 columns (arrays; conditions).
bicluster 50 arrays
Methanococcus maripaludis S2
37
[+] Show/hide bicluster #50 ratios.
bicluster 50 ratios
Methanococcus maripaludis S2
21x37
GENES ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
Antisense_27 -0.776030515045644 1.51466444003267 1.31192044135956 0.0237431269392893 3.60491096106733 -0.688703329259415 -0.83511658481614 -0.340971847312193 -0.359273504256784 -0.188458039440605 -0.0481453361987436 -0.151854725551424 -0.676502224629688 -0.0237431269392895 0.507004924453838 0.244681174914706 0.0982679193579812 0.525306581398429 0.751027017048379 0.616814866121382 -0.286066876478422 0.275183936489024 0.714423703159198 1.12316070825505 1.40378611473878 1.02555187121724 -0.188458039440605 -0.707004986204006 -1.34756297926468 -1.84780826908349 -2.26874637880907 -2.05522704778885 -1.75629998436053 -1.28045690380118 -1.07913867741068 -0.414178475090556 0.397194982786294
MMP0123 -1.09339148032891 0.116533880884375 0.178868948654444 0.488337699999492 1.80583242151613 0.293200126935202 -0.171033407378868 0.305416798890835 0.146600063467601 0.439800190402803 0.574183581914771 0.647483613648571 0.293200126935202 -0.219900095201402 1.29496722729714 -1.27053388338588 -1.13615049187391 -0.476450206269703 -0.745216989293638 -1.36826725903094 1.20945052360771 1.13615049187391 1.73476741769995 1.49043397858728 1.67368405792178 0.696350301471105 -0.989550428406307 -1.08728380405137 -1.83250079334501 -1.97910085681261 -1.88136748116755 -1.88136748116755 -1.75920076161121 -0.96511708449504 -0.708566973426738 0.0610833597781671 0.0366500158669002
MMP0184 0.530156805925621 0.7244170631017 1.9063739566278 0.0899660441404383 1.5876579509883 0.033008623874073 -0.412607798425915 -0.0660172477481464 -0.0330086238740732 -0.231060367118512 -0.528137981985171 -0.214556055181476 0.132034495496293 0.132034495496293 -0.379599174551841 -0.264068990992585 -0.297077614866658 0.0990258716222193 -0.198051743244439 0.0165043119370366 -0.0165043119370366 0.726189725229609 2.07954330406661 1.7164484414518 1.65043119370366 2.12905623987772 0.709685413292573 -0.297077614866658 -0.511633670048134 -1.32034495496293 -1.38636220271107 -1.38636220271107 -1.38636220271107 -1.25432770721478 -0.643668165544427 0.148538807433329 0.528137981985171
MMP0373 -0.0982768731703237 1.5058941619587 1.03375878677238 0.454579256911477 3.94132689836037 -0.290763484503839 -0.174458090702303 0.183073305057972 0.0667679112564368 0.0969211615012794 0.15292005481313 0.109843983034783 -0.118459197390453 0.0538450897229329 0.398453663949705 -1.03597952626923 -0.799061131488327 -0.575065558240926 -0.437222128550217 -0.419991699838878 0.15292005481313 0.984288240135217 1.56150760196506 1.60889128092124 1.63042931681041 1.1565925272486 -0.605218808485768 -0.622449237197107 -0.725831809465138 -1.04890234780274 -1.61750649527691 -1.53135435172022 -1.51412392300888 -1.06182516933624 -0.954134989890374 -0.428606914194547 -0.359685199349193
MMP0387 -0.811735700266649 2.06145520535531 1.63929600866102 0.973667498116534 1.78760977407278 -0.16435663150162 -0.19493460945541 0.179645620478515 0.301957532293674 0.271379554339884 0.340180004735912 0.49306989450486 0.0344002251980135 0.103200675594041 0.309602026782122 -1.75441148509869 -1.5785881118644 -0.806494168531206 -0.477780905527965 -0.546581355923993 0.149067642524725 1.2880973213034 1.63974406777198 1.55565462839906 1.70090002367956 0.982317541765497 -0.0496892141749085 -0.49306989450486 -0.745338212623626 -1.19636338744203 -1.18107439846513 -0.959384058300155 -0.867650124438785 -0.668893267739151 -0.447202927574176 -0.13377865354783 0.126134159059383
MMP0558 -0.353776839243733 0.702795766398033 0.587777628391357 -0.625492980806107 2.48728519035704 -0.0756598027121116 0 0.484222737357514 0.756598027121116 0.348035092475714 0.393430974102981 0.423694895187825 0.317771171390869 0.938181553630184 0.665806263866582 -1.08950115905441 -0.998709395799874 -0.892785672002917 -0.136187644881801 -0.226979408136335 -0.211847447593913 1.05923723796956 1.45266821207254 1.84609918617552 1.84609918617552 1.99741879159975 -0.121055684339379 -0.938181553630184 -1.67964762020888 -1.51319605424223 -1.54345997532708 -1.4224042909877 -1.04410527742714 -0.892785672002917 -0.605278421696893 -1.08950115905441 -1.18029292230894
MMP0622 -1.35310733556451 1.1270463891162 0.536965317554806 -0.332192178813664 1.48830844942739 0.0851125242714687 -0.189866400297892 0.333902979834224 0.530316497383767 0.687447311423402 0.805295421953128 0.896955063476248 0.2291491038078 0.805295421953128 1.02789740850928 -1.02789740850928 -1.06718011201919 -0.530316497383767 -0.255337572814406 -0.163677931291286 -0.883860828972945 -0.0196413517549544 0.779106952946522 0.438656855860647 1.34215903658855 1.90521112023057 -1.04099164301258 -1.08027434652249 -1.32906480208524 -1.577855257648 -1.77426877519754 -1.68260913367442 -1.49928985062818 -1.32906480208524 -0.870766594469642 -0.569599200893676 -0.373185683344133
MMP0624 -1.70097094211366 0.816001249327681 0.308024061165368 0.122942806632313 1.89925790738235 -0.744241673240538 -0.619217123275882 0.469231899945827 0.461877514653788 0.513358211698058 0.623673991078637 0.520712596990097 -0.104410152833182 0.189765258848361 0.881077476299987 -1.5752872112409 -1.66353983474536 -0.994290773169849 -0.604508352691805 -0.619217123275882 -0.52361011447938 0.976684485096488 1.56503530845957 1.7415405554685 1.91804580247743 1.28556866736211 -0.604508352691805 -0.803076755576846 -1.00899954375393 -1.7665012288339 -2.45781344628552 -2.33278889632087 -2.1857011904801 -1.08254339667431 -0.67805220561219 0.138284561804091 0.454523129361749
MMP0633 -0.688511997263835 1.44928786087292 0.673522943921636 -0.0896305381901187 3.32030737200598 -0.295408378317517 -0.0859369827832777 0.547848265243395 0.392087483948704 0.483395528155937 0.413571729644524 0.150389719870736 -0.359861115404975 0.55321932666735 0.36523217682893 -1.32665217171685 -1.57909205864273 -0.843256643560912 -0.880854073528596 -0.821772397865093 0.617672063754808 0.853998766408822 1.22997306608566 0.999017424855603 1.10106759191075 0.440427036764298 -0.252439886925878 -0.832514520713002 -1.07958334621493 -1.78319239275301 -2.22361942951731 -2.14305350815799 -1.86375831411233 -1.05809910051911 -0.73046435365786 -0.0805659213593228 0.18798714983842
MMP0683 -0.344017035996406 0.769064672550607 0.448557205267749 -0.96052955012866 2.26094589042821 -1.00431270013802 -0.203488194145612 0.203488194145612 0.164103382375493 0.190359923555572 0.164103382375493 0.072205488245217 -0.347899170636045 0.886158264827663 0.177231652965533 -1.47693044137944 -1.25374984134877 -0.899286535417702 -0.938671347187821 -1.31939119429896 1.01744097072806 1.04369751190814 1.04369751190814 0.754875558927268 0.912414806007742 0.413540523586243 -0.676105935387032 -1.16185194721849 -1.35877600606908 -1.58195660609975 -1.63446968845991 -1.38503254724916 -1.06995405308822 -0.649849394206953 -0.269129547095809 -0.0328206764750986 0.0853337588352565
MMP0692 -0.154091733607468 0.22801495492154 0.470959322255615 -0.113994118144547 2.19306015369881 -0.435298671325623 -0.400474777619573 0.313415043354448 0.165413495103737 0.269885176221886 0.557182299296797 0.478828538458185 -0.165413495103737 0.165413495103737 0.322121016780961 -0.0522358405590748 -0.278591149648398 0.191531415383274 -0.121883627971174 0.130589601397687 1.30589601397687 1.37554380138897 1.72378273844947 1.98496194124484 2.39414269229092 1.77601857900854 -0.705183847547508 -1.20142433285872 -1.35813185453594 -1.59319313705178 -1.91531415383274 -1.74119468530249 -1.53225132306619 -1.11436459859359 -1.00118694404893 -0.539770352443772 -0.705183847547508
MMP0864 -0.852277628211099 0.331137009374395 0.328032415738198 -0.445011390299112 3.54128678232344 -0.318772769946481 -0.571915851962804 0.553164512554188 0.0562540182258496 0.48753482462403 0.168762054677549 0.0937566970430826 -0.281270091129248 0.384402457876639 -0.0656296879301579 -0.656296879301579 -0.600042861075729 -0.318772769946481 -0.00937566970430827 0.984445318952368 0.0187513394086165 0.956318309839443 1.60323951943671 1.64074219825395 1.50010715268932 1.96889063790474 -0.0937566970430827 -0.843810273387744 -0.956318309839443 -1.1344560342213 -1.09695335540407 -1.08757768569976 -0.834434603683436 -0.993820988656676 -0.675048218710195 -1.07820201599545 -0.928191300726518
MMP0912 -1.76333534461045 0.528282594279032 0.0714955468494239 -0.565668106509236 1.72427967862164 -0.0748997632831661 -0.163669853100252 0.657453477707792 0.757319828752014 0.66300160832136 0.685194130775632 0.568683387890707 0.196958636781659 0.130381069418845 -0.036062848988191 -1.15123710231533 -1.41199924115302 -0.951504400226889 -0.535394604209299 -0.0582553714424625 -0.00277406530678394 1.30658475949523 1.36761419624448 1.43419176360729 1.40645111053945 1.21226653906458 0.041610979601759 -0.807253004274125 -1.26774784520026 -1.90023473514699 -2.06667865355403 -2.02784173925906 -1.72269455551282 -1.2954884982681 -0.762867959365582 -0.424431991937942 -0.629712824639953
MMP0913 -1.34469356432724 0.825672802752317 0.11923615139143 -0.693841281210691 2.35002709810517 -0.368257165108665 0.015560161906 0.710580727040664 0.788381536570664 0.778008095299997 0.814315139747331 0.793568257205997 0.300829796849332 0.0414937650826666 0.534232225439332 -1.21887934930333 -1.27074655565666 -0.689833844499331 -0.549792387345331 -0.129668015883333 -0.0311203238119999 1.11514493659666 1.447095057258 1.53008258742333 1.59232323504733 1.40041457154 -0.015560161906 -0.809128419111997 -1.275933276292 -1.71161780965999 -1.91908663507333 -1.88796631126133 -1.59232323504733 -1.15663870167933 -0.726140888946664 -0.264522752401999 -0.471991577815332
MMP0914 -1.62033513860071 0.608404360146227 0.0682863385411748 -1.10503422786412 2.78873015364142 -0.27570320961269 0.0864951245843732 0.713584777821079 0.756832340113266 0.837921519411116 0.843327464697639 0.783862066545883 0.47031723992753 0.50275291164667 0.394634005916203 -1.24877336118689 -1.23255552532732 -0.648713434382799 -0.362198334197063 -0.135148632163083 -0.14596052273613 1.02712960443943 1.58934791423786 1.65962520296266 1.621783585957 1.3893279386365 -0.0594653981517567 -0.848733409984163 -1.29202092347908 -1.84883328799098 -2.1083186617441 -2.02722948244625 -1.73530843697399 -1.25958525175994 -0.848733409984163 -0.394634005916203 -0.594653981517566
MMP1220 -0.29410129806375 0.476736812482948 0.473919078402625 -0.446916406566494 1.36235061832793 0.0780025822543413 0.35881187836997 0.215287127021982 0.265208779664761 0.221527333602329 0.171605680959551 0.0904829954150359 -0.00936030987052097 -0.146644854638162 0.12792423489712 -0.177845887539898 -0.209046920441635 -0.134164441477467 -0.0655221690936467 0.00936030987052097 -0.140404648057814 0.321370638887886 0.552258282360737 0.583459315262473 0.577219108682126 0.858028404797755 -0.246488159923719 -0.396253117852054 -0.433694357334138 -0.508576836298306 -0.689542827128377 -0.633380967905252 -0.633380967905252 -0.751944892931851 -0.652101587646294 -0.589699521842821 -0.608420141583862
MMP1237 -1.19719699782063 0.871577652809746 0.413309752270096 0.272515418823561 4.55360433391257 -0.0977107197367978 0.136795007631517 0.0586264318420787 0.0977107197367978 0.0846826237718914 0.0195421439473596 -0.227991679385862 -0.644890750262866 0.110738815701704 0.149823103596423 -0.423413118859457 -0.631862654297959 -0.749115517982117 -0.0195421439473596 -0.214963583420955 0.071654527806985 0.214963583420955 0.697003134122491 1.02270553324515 1.08784601306968 1.38749222026253 -0.475525502719083 -1.16601458885912 -1.1269303009644 -1.62199794763084 -1.85650367499916 -1.322351740438 -1.50474508394669 -1.7262227153501 -1.17904268482403 -1.20509887675384 -1.21812697271875
MMP1475 -1.69901817975779 1.42791094294335 0.870538943415468 -0.212802271096457 3.11457945338794 -0.541580105222138 -0.178103524536139 0.417998067788898 0.497962915539818 0.476154320698658 0.519771510380978 0.694240269110257 0.258068372287059 0.00363476580685999 1.01409966011394 0.0181738290342999 -0.185373056149859 -0.149025398081259 -0.439806662630058 -0.0835996135577796 -0.527041041994698 0.185373056149859 0.868709027839536 1.05771684979626 1.21037701368438 1.10133403947858 -0.410728536175178 -0.941404343976736 -1.23218560852553 -1.55204499952921 -1.85736532730545 -2.16995518669541 -2.10452940217193 -2.15541612346797 -1.87190439053289 -1.18856841884321 -0.817822306543496
MMP1613 -0.91760965706846 -0.410590000248533 0.347471568814044 -0.184364351578175 2.10270837137024 -0.819823993393683 0.637640883750642 -0.0910915548215202 -0.0455457774107602 0.00910915548215204 0.218619731571649 0.409911996696841 -0.209510576089497 0.437239463143297 -0.0182183109643041 0.227728887053801 0.0819823993393682 0.409911996696841 -0.13663733223228 -0.683186661161402 0.792496526947227 1.96757758414484 1.41191909973356 1.53944727648369 1.53944727648369 1.35726416684065 -0.309711286393169 -1.08398950237609 -1.04755288044748 -1.26617261201913 -1.24795430105483 -1.66697545323382 -1.84004940739471 -1.87648602932332 -1.94935927318053 -1.3299367003942 -0.992897947554571
MMP1635 -0.918269202368057 1.8338156524369 1.10424767740616 0.0386607565953257 3.48869173998316 -0.863925327865764 -0.857380439018296 -0.235615998508845 -0.0916284438645506 0.0981733327120187 0.189801776576569 0.183256887729101 -0.464687108170221 -0.117807999254422 0.117807999254422 -0.43850755278035 -0.805021328238553 -0.143987554644294 -0.15707733233923 -0.235615998508845 0.28143022044112 0.857380439018296 1.26316354756131 1.69512621149419 1.9176524323081 1.4071511022056 0.0261795553898717 -0.464687108170221 -0.994823104815122 -1.69512621149419 -2.1205439865796 -2.07472976464733 -1.79984443305367 -1.25661865871384 -1.00136799366259 -0.170167110034166 0.366513775458203
MMP1654 -0.0432779010291219 1.85910864750549 0.926097554126444 0.402696092905036 3.21562139837828 -0.173890185639709 -0.32319324522453 0.5861981177012 0.599771123118002 0.165434949780339 0.260445987697953 0.111142928113132 -0.228182207306917 0.477614074366784 -0.431777288558946 -0.87968646731341 -0.866113461896608 -0.676091386061381 -0.228182207306917 0.0975699226963298 -0.920405483563816 1.03410729645566 1.72633057271256 1.91635264854779 1.73990357812936 1.63131953479495 -0.160317180222907 -0.445350293975748 -0.961124499814222 -1.44975269481909 -1.4768987056527 -1.31402264065107 -0.920405483563816 -0.974697505231024 -0.716810402311787 -0.648945375227777 -0.771102423978994
[+] Show/hide bicluster #50 motif PSSM #1. bicluster 50 motif PSSM #1 Methanococcus maripaludis S2 10x4
POSITION A C G T
1 0 0 0 1
2 0 0.111111 0 0.888889
3 0.111111 0.333333 0.222222 0.333333
4 0 0.333333 0.666667 0
5 0.111111 0.111111 0.666667 0.111111
6 0 0 1 0
7 0 0.222222 0.555556 0.222222
8 0 0.111111 0.888889 0
9 1 0 0 0
10 0 0 0 1 [+] Show/hide bicluster #50 motif PSSM #2. bicluster 50 motif PSSM #2 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 0 0 0 1
4 0 0.2 0.4 0.4
5 0 0 0 1
6 0 0 0 1
7 0 0.4 0 0.6
8 0 0.6 0 0.4
9 0 0 0.8 0.2
10 0 0.6 0.4 0
11 0 1 0 0 |