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[+] Show/hide bicluster #48 rows and columns.
bicluster 48
Methanococcus maripaludis S2
21x38
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bicluster 48 genes
Methanococcus maripaludis S2
21
[+] Show/hide bicluster #48 rows (short gene names).
bicluster 48 short names
Methanococcus maripaludis S2
21
short_name
[+] Show/hide bicluster #48 rows (long gene names).
bicluster 48 long names
Methanococcus maripaludis S2
21
long_name
[+] Show/hide bicluster #48 rows (NCBI RefSeq gene IDs).
bicluster 48 NCBI RefSeq IDs
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #48 gene upstream sequences.
bicluster 48 upstream sequences
Methanococcus maripaludis S2
21
upstream
[+] Show/hide bicluster #48 columns (arrays; conditions).
bicluster 48 arrays
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #48 ratios.
bicluster 48 ratios
Methanococcus maripaludis S2
21x38
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
MMP0192 -0.0579176413265279 -0.028342675542769 -0.46594554892617 1.91700369722266 0.200863309281363 0.0751697047003873 0.0948863485562265 -0.0702405437364274 -0.0455947389166283 0.0110906121689096 -0.0160197731328694 -0.028342675542769 -0.0529884803625681 -0.0776342851823672 2.57425431342802 2.62108134258563 2.06655073414015 2.35983581149576 2.02218828546452 1.963038353897 1.59335128160001 2.71719998138285 0.2698715627768 -0.0209489340968292 -0.112138411930086 -0.0677759632544475 0.121996733858006 0.223044533619182 0.329021494344318 0.2821944651867 0.489219225673012 -0.0357364169887087 -0.131855055785925 -0.161430021569684 -0.158965441087704 -0.134319636267905 -0.220579953137202 -0.205792470245323
MMP0275 -0.402371867114626 -0.549475560468361 0.153930256572775 2.47030223290653 0.835029788743257 -0.00432657921628631 -0.471597134575207 -0.575435035766079 -0.419678183979772 -0.402371867114626 -0.3158402827889 -0.540822402035788 -0.618700827928942 -0.393718708682054 1.31095350253475 1.79553037475882 1.50997614648392 2.39259830660633 2.27145408855031 2.10704407833143 1.95128722654512 1.96859354341027 1.19846244291131 0.125470797272303 -0.168736589435166 0.00432657921628631 0.51486292673807 1.14654349231587 1.20711560134388 0.800417155012966 1.44075087902334 -0.160083431002593 -0.71388557068724 -0.860989264040975 -0.817723471878112 -0.540822402035788 -0.783110838147821 -0.860989264040975
MMP0466 -1.05740111073226 -1.07276287021021 -0.690820090325775 3.31155517271064 -0.0537661581728268 -0.494136596540742 -0.903783515952756 -0.883301169982156 -0.678477710276148 -0.750165921173251 -0.606789499379046 -0.7348041616953 -0.760407094158551 -0.637513018334947 0.335398415268587 1.49265096260753 1.57970093298258 1.72819794126944 1.62066562492378 2.42459770426986 2.66014468293177 0.197142579967032 0.391724866687739 -0.335398415268587 -0.43268955862894 -0.407086626165689 -0.13569554205523 0.258589617878834 0.273951377356785 0.028163225709576 0.44293073161424 0.898662929460106 0.232986685415583 -0.028163225709576 0.0947308501140284 0.268830790864134 0.15105730153318 -0.181780820489081
MMP0467 -1.15280832621604 -1.07200400428501 0.348310504269552 3.00892701444052 -0.0592565027494228 -0.436343338427568 -0.861912767264331 -0.576404163108021 -0.49559984117699 -0.603338937085032 -0.479438976790784 -0.581791117903423 -0.732625852174681 -0.608725891880434 0.28550860415631 1.74537335371027 1.8261776756413 2.44567747711254 1.99317327429877 2.56957743740679 2.63422089495161 0.107739095908041 0.226252101406887 -0.474052021995382 -0.33937815211033 -0.274734694565505 0.0323217287724123 0.237026010997691 0.274734694565505 0.145447779475856 0.258573830179299 0.818817128901114 0.215478191816083 -0.0323217287724124 0.0538695479540206 -0.215478191816083 -0.215478191816083 -0.517147660358598
MMP0468 -1.08806993030096 -1.2269724745947 1.06932547437884 2.87862548522229 0.0951739655345991 -0.722807684195198 -0.918300153941942 -0.835987535101207 -0.774253070970657 -0.82055391906857 -0.769108532293111 -0.82055391906857 -0.918300153941942 -0.88228838319912 1.04691362088059 0.990323695427584 1.34529686417825 2.23015751671614 1.93691881209603 2.35877098365479 2.50796260530362 1.39674225095371 0.198064739085517 -0.599338755934096 -0.697084990807468 -0.542748830481091 -0.439858056930174 0.0591621947917778 0.146619352310058 0.0591621947917778 0.326678206024164 0.280377357926251 -0.362689976766985 -0.290666435281343 -0.264943741893613 -0.0385840400815941 -0.30610005131398 -0.424424440897536
MMP0469 -1.19264416815142 -1.18089397930264 0.687200700174874 3.08070796457215 -0.205628304853693 -0.493507931648864 -0.646260386683036 -0.693261142078166 -0.587509442439124 -0.640385292258645 -0.481757742800082 -0.564009064741559 -0.699136236502558 -0.581634348014733 0.693261142078166 1.56865021131246 1.70377738307346 2.32653739205893 2.10328380393206 2.71429362406875 2.76129437946388 0.875389069234295 0.393631326434213 -0.405381515282995 -0.499383026073255 -0.42888189298056 -0.158627549458563 0.405381515282996 0.499383026073255 0.170377738307346 0.558133970317168 0.658010575531819 0.0352505665463475 -0.158627549458563 -0.04700075539513 0.0646260386683037 -0.164502643882955 -0.287879626795171
MMP0470 -1.07305137073163 -0.980053585268218 0.518684675440777 2.6806618813503 0 -0.51506465795118 -0.579447740195078 -0.68675287726824 -0.636677146634098 -0.751135959512138 -0.54367936117069 -0.48644995473167 -0.722521256292628 -0.729674932097505 0.643830822438975 1.73118954478036 1.86710938507303 2.46086447687786 2.21048582370715 2.75416518487784 2.76131886068272 0.665291849853608 0.529372009560935 -0.386298493463385 -0.34337643863412 -0.25753232897559 0.11445881287804 0.54367936117069 0.5722940643902 0.350530114438998 0.507910982146303 0.62952347082922 -0.0786904338536525 -0.250378653170713 -0.11445881287804 -0.0500757306341426 -0.157380867707305 -0.379144817658508
MMP0471 -0.659981827891524 -0.834916770224217 1.48257012961914 2.65702263796744 -0.00795158828784969 -0.405531002680334 -0.683836592755073 -0.25445082521119 -0.389627826104635 -0.644078651315825 -0.0556611180149478 -0.437337355831733 -0.588417533300877 -0.77925565220927 0.612272298164426 1.70163989359983 1.89247801250823 2.53655666382405 1.95609071881102 2.82281384218664 2.94208766650438 0.198789707196242 0.922384241390564 0.0397579414392484 -0.103370647742046 -0.119273824317745 0.357821472953236 1.03370647742046 1.2483993611924 0.882626299951315 1.00190012426906 0.333966708089687 -0.294208766650438 -0.270354001786889 -0.198789707196242 -0.270354001786889 -0.405531002680334 -0.405531002680334
MMP0472 -0.971203763289511 -0.90389779870236 -0.0316551090590515 0.855477773358223 0.422029703664532 -0.351988889087714 -0.695249308482189 -0.38564187138129 -0.405833660757436 -0.513523204096879 -0.426025450133581 -0.506792607638164 -0.648135133271182 -0.479870221803303 0.778751315976437 1.79507138124243 1.96333629271031 3.21522723403133 2.80466085004971 3.10753769069189 3.30272498799463 1.21624008579292 0.516258054086545 -0.230838152830841 -0.38564187138129 -0.277952328041847 0.112422266563634 0.630678193884703 0.623947597425988 0.213381213444361 0.697984158471855 0.53644984346269 -0.0356508555281004 -0.143340398867543 -0.0423814519868156 0.0316551090590514 -0.284682924500562 -0.439486643051012
MMP0502 -0.285459332491616 -0.292841901435365 0.667728649042959 2.68883027734721 0.0147651378874974 0.098434252583316 -0.0123042815729145 -0.118121103099979 -0.105816821527065 -0.0369128447187435 0.00738256894374869 -0.0344519884041606 -0.0442954136624922 -0.120581959414562 2.49776915930164 2.14094499368712 1.96622419535174 2.20984897049544 1.96622419535174 1.98098933323924 1.77181654649969 2.51745600981831 0.147651378874974 0.0369128447187435 -0.00738256894374871 -0.0418345573479093 0.164877373077054 0.425728142422842 0.45771927451242 0.460180130827002 0.521701538691575 -0.243624775143707 -0.310067895637446 -0.349441596670772 -0.354363309299938 -0.344519884041606 -0.361745878243686 -0.334676458783275
MMP0533 -0.609083809264856 -0.373870698252005 -1.43591078178666 3.81587103135728 0.296130284633087 -0.145785257269846 -0.41663671843616 -0.188551277454001 0.0395341635281581 -0.0317425367787665 0.16070455404993 0.174959894111315 0.10368319380439 -0.0958915670549988 1.21559971859241 1.36528078923696 1.05166330788649 1.73591963083296 1.63613225040327 1.72166429077158 1.73591963083296 1.52921719994288 0.417300675154859 -0.402381378374775 -0.623339149326241 -0.430892058497545 -0.0103595266866891 0.445811355277629 0.795067186781559 0.574109415830093 1.10155699810134 -0.559190119050009 -0.865679930369785 -1.06525469122917 -1.06525469122917 -0.965467310799479 -1.20780809184302 -1.27908479214995
MMP0680 -0.268507989820966 -0.401555079804537 0.189937266687373 0.809638015293801 0.00968138014468202 -0.673696854770933 -0.328983939813499 -0.389459889806031 -0.322936344814245 -0.431793054800803 -0.183841659831421 -0.250365204823207 -0.389459889806031 -0.286650774818726 1.02567734001922 2.82786064979668 2.39243380985045 2.33800545485717 2.71900393981013 2.2956722898624 2.71295634481087 0.771678350050588 0.959153795027438 0.245537585115558 -0.0568421648471035 0.0822525201357207 0.402775055096142 1.22524797499458 1.2615335449901 0.965201390026692 1.04986772001624 -0.27455558482022 -0.607173309779147 -0.722077614764958 -0.486221409794082 -0.341079129812005 -0.46203102979707 -0.510411789791095
MMP0851 -0.295424890826302 -0.160170121532332 -1.41529887976276 0.930142188754496 -0.00118644534468394 -0.150678558774861 -0.0842376194725599 0.03915269637457 0.107966526366239 0.24084840497084 0.281187546690094 0.323899579098716 0.316780907030612 0.124576761191814 1.647972583766 2.51645057607464 2.54492526434706 2.55441682710453 2.31475486747837 2.55916260848326 2.34085666506142 1.60288766066801 0.0249153522383628 -0.0652544939576168 -0.290679109447566 -0.278814656000726 -0.00118644534468394 0.236102623592104 0.33101825116682 0.463900129771421 0.556442866656769 -0.0106780081021555 -0.224238170145265 -0.423560988052167 -0.546951303899297 -0.435425441499007 -0.262204421175151 -0.352374267371131
MMP1193 -0.0761692574673199 -0.084792192274941 -0.0711120183008026 -0.0860376487381913 0.159524293940991 -0.0100600906088913 -0.061797699454618 -0.0503004530444565 -0.0244316486215932 -0.0445518298393758 -0.0330545834292143 -0.084792192274941 -0.107786685095264 -0.0359288950317547 2.2462745173853 2.70329006218922 2.31238368424373 2.69754143898414 2.366995604692 2.48771669199869 2.53657998924188 2.260646075398 0.372223352528978 0.0359288950317546 -0.119283931505425 -0.0962894386851025 0.0330545834292143 0.240005018812121 0.283119692850227 0.208387591184177 0.38372059893914 0.0100600906088913 -0.038803206634295 0.0589233878520776 0.15664998233845 -0.0186830254165124 -0.199764656376556 -0.0876665038774814
MMP1194 0.0420228088890877 -0.00900488761909024 -0.050674885011262 -0.160414727947424 -0.327177583493612 -0.129070055873627 0.267144999366344 -0.213115673651802 -0.129070055873627 -0.192104269207258 -0.0960521346036291 -0.138074943492717 -0.13207168507999 -0.168091235556351 1.92104269207258 3.01363572318886 2.67745325207616 2.41330988191618 2.11314696127984 2.32926426413801 2.31725774731255 1.76195634413532 0.348188987938156 -0.0330179212699975 0.0360195504763609 -0.135073314286353 -0.0930505053972657 0.0930505053972657 0.150081460318171 0.0750407301590852 0.051027696508178 -0.0630342133336316 0.11406190984181 0.291158033017251 0.471255785399055 -0.0240130336509073 -0.168091235556351 0.0990537638099925
MMP1481 -0.391135416426225 -0.0552913939450685 -0.282441972328121 -0.212473981626367 -0.104439299674018 -0.202735111131918 -0.317413557832801 -0.530387815991583 -0.419805028101446 -0.423900686912192 -0.452570298587413 -0.530387815991583 -0.526292157180837 -0.440283322155175 0.870327497283486 2.82805240881999 1.81642468256577 2.08673816407499 2.06625987002126 2.20551226958662 2.55773892731076 1.06282346138854 0.391135416426225 -0.169969840645951 -0.321509216643546 -0.260074334482359 -0.00614348821611873 0.301030922589817 0.36656146356175 0.301030922589817 0.559057427666804 0.100343640863273 0.0675783703773059 -0.0389087587020852 -0.0225261234591019 -0.0839610056202892 -0.28874394615758 -0.33789185188653
MMP1482 -0.394338498388564 -0.0267997037739801 -0.24494394403901 -0.527364586178496 -0.0459423493268229 -0.222054688412978 -0.237368804855252 -0.413481143941407 -0.382852911056858 -0.401995556609701 -0.382852911056858 -0.470909080599935 -0.382852911056858 -0.379024381946289 0.968617864973851 3.04368064290202 1.71518104153472 2.06740571970703 1.92957867172656 2.18609012213466 2.55362891674924 0.983931981416125 0.348396149061741 -0.179940868196723 -0.317767916177192 -0.245025863076389 0.00765705822113717 0.118684402427626 0.256511450408095 0.0765705822113716 0.329253503508898 0.0191426455528429 0.0765705822113716 0.0306282328845486 0.0650849948796659 -0.0803991113219402 -0.325424974398329 -0.325424974398329
MMP1483 -0.315857955473354 -0.465959378006554 1.53301647551025 1.65209231367415 0.196252780228152 -0.0862910739519896 -0.483618368892813 -0.395323414461519 -0.280539973700837 -0.245221991928319 -0.351175937245872 -0.695526259527919 -0.67786726864166 -0.545424836994719 0.452308148078905 2.12108278683036 0.999736865552928 1.52950659214069 1.51184760125443 1.78556195999145 2.12991228227349 0.52294411162394 1.61780154657199 0.284547734659446 -0.307028460030225 0.0461513576949516 0.52294411162394 1.22930374707429 1.40589365593688 1.46770012403879 0.81431746124721 -0.254051487371448 -0.766162223072954 -0.854457177504248 -0.810309700288601 -0.307028460030225 -0.713185250414178 -0.792650709402342
MMP1602 -0.195600172504253 -0.117360103502552 -0.50860671447186 1.16218909504107 0.160826808503497 0.0130400115002835 -0.299920264506521 -0.386853674508411 -0.343386969507466 -0.178213490503875 -0.0130400115002835 0.0304266935006615 -0.230373536505009 -0.343386969507466 1.17794770552561 1.64738811953582 1.71693484753733 1.98642841854319 1.39528123053034 2.44717549155321 2.46456217355358 0.995387544521641 1.09970763652391 0.282533582506143 -0.299920264506521 -0.143440126503119 0.508560448511057 1.28226779752788 1.41266791253071 1.19533438752599 1.65608146053601 -0.326000287507088 -0.899760793519562 -1.08232095452353 -0.899760793519562 -0.847600747518428 -0.838907406518239 -0.856294088518617
Unanno_29 -0.679417586564326 -0.414444727804239 -0.311984818953613 -0.800083902835524 -0.258178682894444 -0.135883517312865 -0.0679417586564326 -0.183442748372368 0 -0.0135883517312865 -0.203825275969298 -0.203825275969298 -0.217413627700584 -0.203825275969298 0.319326265685233 3.35632287762777 1.52868956976973 1.78007407679854 1.6645730870826 1.97031100103655 2.35078484951257 0.434827255401169 0.570710772714034 -0.407650551938596 -0.557122420982748 -0.495974838191958 -0.0407650551938596 0.346502969147806 0.529945717520174 0.285355386357017 0.516357365788888 0.149471869044152 0.0883242862533624 -0.0135883517312865 0.0679417586564326 -0.264972858760087 -0.509563189923245 -0.489180662326315
Unanno_31 -0.49868132701864 0.234901481831023 0.395996472354994 1.97750791261111 -0.349982109008573 -0.379721952610586 -0.265719218802868 -0.250849297001862 -0.0947151180912915 0.130812029223977 0.415818863743271 0.507516714849479 0.547169839652164 0.299337809635386 2.11098994905803 1.93750752804629 2.00690049645099 2.20020947986407 1.91520264534478 2.16303467536156 2.09612002725703 2.02672705885233 -0.377243632310419 -0.530899490920821 -0.568074295423338 -0.446636600715116 -0.0253221496865936 0.190291716428003 0.329077653237399 0.490168472748305 0.492646793048473 -0.300415703005217 -0.466463163116459 -0.625075662327197 -0.72173015403374 -0.838211208141626 -0.820862966040452 -0.689511990131559
[+] Show/hide bicluster #48 motif PSSM #1. bicluster 48 motif PSSM #1 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 0 0 1
2 0 0 0 1
3 0 0.111111 0.666667 0.222222
4 0 0 1 0
5 0.555556 0 0.444444 0
6 0 0 1 0
7 0 0.111111 0.888889 0
8 0.444444 0 0.555556 0 [+] Show/hide bicluster #48 motif PSSM #2. bicluster 48 motif PSSM #2 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0 0.833333 0 0.166667
2 0 1 0 0
3 0 1 0 0
4 0 0.333333 0.666667 0
5 1 0 0 0
6 0 0 0.166667 0.833333
7 0.5 0 0 0.5
8 0.833333 0 0 0.166667
9 1 0 0 0
10 1 0 0 0
11 0.833333 0 0 0.166667 |