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[+] Show/hide bicluster #47 rows and columns.
bicluster 47
Methanococcus maripaludis S2
19x37
[+] Show/hide bicluster #47 rows (genes).
bicluster 47 genes
Methanococcus maripaludis S2
19
[+] Show/hide bicluster #47 rows (short gene names).
bicluster 47 short names
Methanococcus maripaludis S2
19
short_name
[+] Show/hide bicluster #47 rows (long gene names).
bicluster 47 long names
Methanococcus maripaludis S2
19
long_name
[+] Show/hide bicluster #47 rows (NCBI RefSeq gene IDs).
bicluster 47 NCBI RefSeq IDs
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #47 gene upstream sequences.
bicluster 47 upstream sequences
Methanococcus maripaludis S2
19
upstream
[+] Show/hide bicluster #47 columns (arrays; conditions).
bicluster 47 arrays
Methanococcus maripaludis S2
37
[+] Show/hide bicluster #47 ratios.
bicluster 47 ratios
Methanococcus maripaludis S2
19x37
GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_minus30m
MMP0291 -0.237752351134417 1.56927632885271 0.095581387902283 0.118088458231415 0.427725426687188 0.876830877452878 0.964410672437887 -4.2783233265754 -4.7437205006803 0 0.237752351134417 0.137646098025189 0.0750796898319213 0.0125132816386536 0.0125132816386536 -0.187699224579803 -0.275292196050378 -0.312832040966338 0.60063751865537 -0.381655089978933 -0.131389457205862 -0.344115245062972 -0.875929714705748 -1.70806294367621 -1.90827544989466 -1.17624847403343 -0.976035967814976 0.056309767373941 0 -0.131389457205862 0.344115245062972 0.506787906365468 0.506787906365468 0.056309767373941 0 0.381655089978933 0.306575400147012
MMP0320 0.248593271356262 1.52420245291311 0.331793810875285 0.547538739580438 0.99781669462581 1.17248250556337 0.820762558213619 -4.48098973667 -4.18722635915302 0.777515125305757 0.089916715171414 -0.386112953383131 -0.0370245297764646 -0.0158676556184848 -0.0687598410134343 -0.132230463487374 0.0687598410134343 0.227436397198283 -0.0370245297764646 0.523632635409999 0.089916715171414 -0.49189732417303 -0.872721059016666 -1.29585854217626 -1.39106447588717 -1.19007417138636 -0.915034807332625 -0.364956079225151 -0.534211072488989 0.0687598410134343 -0.259171708435252 0.0158676556184848 -0.0793382780924242 0.0158676556184848 0.671730754515858 0.576524820804949 -0.290907019672222
MMP0415 0.0182602848064926 1.37330620623936 0.0947287821024562 0.155011375119468 -0.0065972826447842 0.110486543570312 -0.41849783822315 -4.95471754638158 -4.57671450702432 0.724324630657541 0.237383702484404 0.164342563258434 0.139995516849777 -0.0426073312151495 0.0426073312151495 0.11564847044112 0.468680643366644 0.00608676160216421 -0.0182602848064926 -0.0913014240324632 -0.176516086462762 -0.383465980936345 -1.05300975717441 -1.25995965164799 -1.08953032678739 -0.955621571539781 -0.541721782592614 -0.213036656075747 -0.383465980936345 -0.213036656075747 -0.200863132871419 -0.0669543776238063 0.0547808544194779 0.359118934527688 0.249557225688733 -0.225210179280076 -0.310424841710375
MMP0582 -0.571254886010374 1.26492341907756 0.715826411528442 1.1576438080024 1.55422121866805 1.61335067819775 1.19362414759264 -4.17485408923066 -3.90592751131994 0.544889275886818 0.123039513909927 -0.202136344280594 -0.0263656101235557 -0.096673903786371 -0.0790968303706672 -0.149405124033482 0.0527312202471115 -0.298810248066965 -1.1337212353129 0.404272688561188 0.333964394898373 0.096673903786371 0.0263656101235557 -0.843699523953783 -1.07220147835793 -0.905219280908747 -0.755814156875264 -0.395484151853336 -0.333964394898373 0.298810248066965 0.298810248066965 0.290021711359113 0.237290491112002 0.18455927086489 0.114250977202075 0.0439426835392596 0.114250977202075
MMP0681 -0.135230671869736 1.09169002700472 0.230620686154027 0.750247579868992 0.585293392264462 0.469783054292976 0.252755924313636 -4.15258101487368 -3.11188546563561 -0.478941962871981 0.202846007804604 0.067615335934868 0.208480619132509 0.174672951165076 0.292999789051094 0.25919212108366 -0.00563461132790559 -0.152134505853453 0.46767274021617 0.067615335934868 -0.760672529267264 -0.631076468725434 -0.997326205039302 -1.85378712688096 -1.81997945891353 -1.5945950057973 -1.51007583587872 -0.901537812464905 -0.794480197234698 -0.72686486129983 -0.152134505853453 0.270461343739472 0.608538023413811 0.439499683576642 -0.247922898427849 -0.0619807246069622 -0.123961449213924
MMP0713 0.318482240764115 0.326820488006008 0.0335371643521146 0.382078031157098 0.556479201519424 0.687999123884373 0.539396427926973 -4.35647411708211 -4.41024998819978 0.0752776205442454 0.573268033375407 0.376388102721227 -0.173717585871336 0.0347435171742671 0 0.0463246895656895 0.335853999351249 -0.150555241088491 -0.359016344134093 0.214251689241314 -0.306901068372693 -0.573268033375407 -0.914912618922367 -1.53450534186346 -1.73138527251764 -1.54608651425489 -1.30288189403502 -0.995980825662323 -0.8801691017481 -0.29531989598127 -0.127392896305646 0.14476465489278 0.665917412506786 0.932284377509501 -0.191089344458469 -0.0289529309785559 -0.115811723914224
MMP0714 0.40567020168514 0.351154646698276 0.189656827910211 0.408585923923721 0.608400763080519 0.69441494539248 0.584684918574752 -4.57439610457006 -4.47829384502671 -0.129344122276421 0.505617932535102 0.370394531973389 -0.099947730849962 0.0411549479970432 0.211654018270508 0.223412574841092 0.393911645114556 -0.111706287420546 -0.393911645114556 -0.0764306177087945 -0.152861235417589 0.0587927828529189 -0.81134040337028 -1.68735286787877 -1.75790420730227 -1.3757511187583 -1.12294215249075 -0.235171131411675 -0.382153088543973 -0.182257626844048 -0.0411549479970432 0.0411549479970432 0.576169271958605 0.940684525646702 -0.276326079408719 -0.0823098959940864 -0.0235171131411675
MMP0938 0.18278743745413 1.55284367859311 1.01501444075858 0.708147028790113 1.0143090031083 0.70899355959468 -0.191574113935983 -4.31008750568986 -4.62400934102971 -0.126545149006705 0.051555431076806 0.398382876502591 0.173413722712893 0.173413722712893 0.00468685737061872 -0.14529257848918 -0.323393158572692 0.0421817163355685 -0.267150870125267 0.248403440642792 -0.0234342868530936 -1.12015891157787 -1.50448121596861 -1.59821836338098 -1.3263806358851 -0.8764423283057 -1.00767433468302 -0.717089177704664 -0.717089177704664 0.00468685737061872 0.0703028605592809 0.0234342868530936 0.201534866936605 0.201534866936605 0.642099459774764 0.651473174516002 0.0421817163355685
MMP0970 -0.00863549512973505 1.24423517769661 0.83350738534074 0.565494483208224 0.436037254153786 1.5834755607391 1.02041452551645 -4.14019836534416 -4.25899747632858 -0.164074407464968 0.0777194561676166 0.25042935876232 0.129532426946028 -0.164074407464968 -0.319513319800201 -0.319513319800201 -0.371326290578612 -0.958539959400603 -0.25042935876232 -0.440410251616493 -0.371326290578612 0.0777194561676166 -1.7184635308173 -1.66665056003889 -0.76855906654643 -0.0777194561676165 -0.474952232135434 0.354055300319142 0.129532426946028 -0.509494212654375 -0.319513319800201 -0.0259064853892054 0.388597280838083 0.872185008103252 0.544036193173316 -0.181345397724438 -0.354055300319142
MMP1024 0.305696068126342 1.16575548417637 1.54341347367887 0.589254154474542 0.263742915164576 0.683082227889832 0.529528970979615 -5.26796325055239 -4.15050700187896 -0.221779500405385 -0.113886770478441 0.125874851581435 0.233767581508379 0.0179821216544907 -0.0419582838604783 0.233767581508379 -0.185815257096404 0.137862932684429 0.125874851581435 0.317684149229336 0.0659344460664658 0.149851013787422 -0.809195474452081 -1.02498093430597 -0.881123961070044 -0.281719905920354 -0.209791419302391 0.689314663422143 0.545457690186218 -0.0419582838604783 -0.185815257096404 -0.185815257096404 -0.185815257096404 -0.233767581508379 0.233767581508379 0.17382717599341 -0.209791419302391
MMP1117 0.437311951593226 2.36614629321397 1.48399281729096 0.999542844717286 1.12841540852038 0.699948786243968 0.372917334012456 -4.49333832067305 -4.35227136373589 0.455725086397151 -0.013809851102944 -0.0414295533088319 -0.170321496936309 -0.24397403615201 -0.308420007965749 -0.308420007965749 -0.326833142769674 0.170321496936309 0.161114929534346 -0.115082092524533 -0.391279114583413 -0.418898816789301 -0.593823597426591 -1.05415196752472 -1.04494540012276 -0.593823597426591 -0.584617030024629 -0.0966689577206079 -0.105875525122571 -0.354452844975562 -0.0598426881127572 0.216354333946122 0.197941199142197 0.234767468750048 0.437311951593226 0.566203895220703 -0.0414295533088319
MMP1128 0.473517194572423 1.2374256685394 0.54008111245439 0.547022331011433 0.802483968094437 1.30906896007459 1.29332727210741 -3.76582937921032 -4.54882361839353 0.152349010427649 0.0864683572697468 -0.135878847138174 -0.234699826875027 -0.1852893370066 0.0123526224671067 0.209994581940814 -0.0288227857565823 -0.572338174309277 0.144113928782911 -0.349990969901356 0.0041175408223689 0.0452929490460579 -1.2970253590462 -1.73348468621731 -1.6676040330594 -1.34643584891463 -0.901741440098789 -0.737039807204033 -0.473517194572423 0.0947034389144846 -0.0041175408223689 -0.135878847138174 0.317050643322405 0.629983745822442 0.588808337598753 0.728804725559295 -0.0041175408223689
MMP1143 -0.533878421800137 1.54484358368152 1.49055381250429 1.2332163529346 0.764403543441582 0.808501744825174 0.76616747774721 -2.96885158642211 -3.18463874682269 0.794306920239227 0.208342798751273 0.260428498439091 0.169278523985409 0.0781285495317272 -0.117192824297591 -0.325535623048864 -0.377621322736682 0.755242645473364 0.0390642747658635 0.703156945785546 0.247407073517136 -0.130214249219546 -0.950564019302682 -1.10682111836614 -1.145885393132 -0.781285495317273 -0.468771297190364 0.104171399375636 -0.260428498439091 0.104171399375636 -0.325535623048864 0.104171399375636 -0.208342798751273 -0.221364223673227 0.299492773204955 -0.0130214249219546 -0.455749872268409
MMP1287 0.245561112844833 0.867487089239712 1.24304315234489 1.21942440772109 1.05436364198986 0.923829517386554 0.969264043039989 -4.14825074476287 -4.86330372486511 0.263528999150552 0.107807317834317 0.0179678863057195 -0.0898394315285973 -0.155721681316235 -0.155721681316235 -0.113796613269557 -0.167700272186715 0.580961657218263 -0.101818022399077 0.33540054437343 0.167700272186715 -0.533047293736344 -1.14994472356605 -1.55721681316235 -1.2038483824832 -0.874437133545014 -0.65283320244114 -0.772619111145937 -0.628876020700181 0.155721681316235 0.0658822497876381 0.419250680466787 0.197646749362914 0.0479143634819186 0.0958287269638372 0.371336316984869 0.0718715452228779
MMP1288 0.124302077312228 1.03862647539106 1.45794217611379 1.10541310764965 0.906640676469961 0.971613070942694 0.854821513478151 -5.01423764090112 -3.73202510081362 -0.124302077312229 0.372906231936686 0.297571639626244 -0.0414340257707429 -0.0941682403880519 -0.222237047315803 -0.0715678626949195 -0.425640446553995 -0.0263671073086546 0.048967485001787 0.0640344034638753 0.10923515885014 -0.342772395012509 -1.25432096196885 -1.962466129687 -1.49539165736226 -0.855047622723511 -0.591376549636966 0.169502832698493 0.214703588084758 0.0640344034638753 0.0113001888465662 0.305105098857288 0.297571639626244 -0.00376672961552208 0.116768618081184 0.500975038864436 -0.0715678626949195
MMP1313 -0.0316781962016391 1.60796715547063 1.01318777024066 0.609266358356857 0.574527758772917 0.650952683288133 0.116795563449105 -5.11293092101272 -3.98167851352855 0.203645547010537 0.248900113012879 0.113136415005854 -0.113136415005854 -0.267001939413815 -0.583783901430206 -0.40276563742084 -0.466122029824118 0.0226272830011708 0.285103765814752 0.366561984618967 -0.475172943024586 -0.665242120234421 -1.06348230105503 -1.42551882907376 -1.26260239146533 -1.13588960665877 -1.10873686705737 -0.34846015821803 -0.45707111662365 -0.475172943024586 -0.45707111662365 -0.194594633810069 0.058830935803044 0.321307418616625 -0.0769327622039807 -0.0950345886049173 -0.384663811019903
MMP1348 -0.210007766588952 0.565189318051313 1.51581699053385 1.06895154438202 1.17696510298147 1.08249838937671 0.317372257184326 -3.77323480323791 -4.67906756709771 0.306011317029616 0.558020636936359 0.774028625427852 0.594021968351607 0.342012648444865 0.00600022190254133 -0.390014423665197 -0.474017530300778 0.450016642690612 0.210007766588952 0.318011760834699 0.138005103758454 -0.0900033285381224 -1.06203927674984 -1.60205924797858 -1.48205480992775 -0.978036170114263 -0.618022855961774 0.246009098004201 -0.0540019971228735 0.138005103758454 -0.234008654199118 -0.0060002219025415 0.0300011095127073 -0.210007766588952 -0.102003772343205 -0.0780028847330394 -0.198007322783869
MMP1350 -0.727239853773949 0.892063975404542 1.09918043127966 0.636870762266807 0.0687492773460009 0.381033656666382 -0.326596302786997 -4.83958853682359 -3.53979870668829 0.456307359230713 0.584643804014351 0.68446103884607 0.65594182889415 0.285192099519196 0 0.385009334350914 -0.0285192099519196 0.327970914447075 -0.156855654735558 1.55429694237962 0.0427788149278794 -0.541864989086472 -0.698720643822029 -0.884095508509507 -0.499086174158592 -0.0998172348317185 -0.0570384199038391 0.370749729374954 -0.299451704495155 -0.0570384199038391 -0.0712980248797989 -0.199634469663437 0.0285192099519196 0.0712980248797989 0.213894074639397 -0.0285192099519196 -0.199634469663437
MMP1648 0.40187334944188 2.29532601472926 1.261238029406 0.642667841372509 0.626396751289566 0.49797620399487 0.000161676152014651 -5.12966779018378 -3.45912486536069 0.803908375035775 0.428675684481473 0.258927562564051 -0.0448322345513363 -0.375394366706317 -0.625549493742518 -0.616615382062653 -0.643417717102246 0.241059339204322 0.098113552326493 -0.00909578783187902 -0.268185026547945 -0.518340153584146 -0.661285940461975 -0.831034062379397 -1.15266208285451 -0.911441067498176 -0.822099950699533 -0.205646244788894 -0.303921473267402 -0.339657919986859 -0.19671213310903 0.375071014402287 0.759237816636454 0.857513045114961 0.107047664006357 0.321466344323101 -0.223514468148623
[+] Show/hide bicluster #47 motif PSSM #1. bicluster 47 motif PSSM #1 Methanococcus maripaludis S2 20x4
POSITION A C G T
1 0 0 0 1
2 0.666667 0 0.166667 0.166667
3 0.833333 0 0 0.166667
4 0.333333 0 0.333333 0.333333
5 0 0 0 1
6 0 0.166667 0 0.833333
7 0.666667 0 0 0.333333
8 0 0 0 1
9 0.333333 0.666667 0 0
10 0 0.666667 0 0.333333
11 0 0 1 0
12 0 0.166667 0.5 0.333333
13 0.666667 0.166667 0.166667 0
14 0.833333 0.166667 0 0
15 0.833333 0 0 0.166667
16 0 0 0 1
17 0 0 0 1
18 0.666667 0.333333 0 0
19 0 0.833333 0 0.166667
20 0 0.666667 0.333333 0 [+] Show/hide bicluster #47 motif PSSM #2. bicluster 47 motif PSSM #2 Methanococcus maripaludis S2 7x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 0 1 0 0
4 0 1 0 0
5 0 0 0.5 0.5
6 0 1 0 0
7 0 1 0 0 |