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bicluster 45
Methanococcus maripaludis S2
23x38
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bicluster 45 genes
Methanococcus maripaludis S2
23
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bicluster 45 short names
Methanococcus maripaludis S2
23
short_name
[+] Show/hide bicluster #45 rows (long gene names).
bicluster 45 long names
Methanococcus maripaludis S2
23
long_name
[+] Show/hide bicluster #45 rows (NCBI RefSeq gene IDs).
bicluster 45 NCBI RefSeq IDs
Methanococcus maripaludis S2
42
[+] Show/hide bicluster #45 gene upstream sequences.
bicluster 45 upstream sequences
Methanococcus maripaludis S2
23
upstream
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bicluster 45 arrays
Methanococcus maripaludis S2
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[+] Show/hide bicluster #45 ratios.
bicluster 45 ratios
Methanococcus maripaludis S2
23x38
GENES ss_HighFormate_HighH2 ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
MMP0184 0 0.7244170631017 -0.618512524350363 1.5876579509883 -0.412607798425915 -0.561146605859244 -0.0660172477481464 -0.231060367118512 0.132034495496293 0.132034495496293 -1.58441394595551 -0.264068990992585 -0.297077614866658 0.0990258716222193 -0.148538807433329 -0.396103486488878 1.50189238627033 3.21834082772213 1.28733633108885 -0.0165043119370366 0.412607798425914 0.907737156537012 0.726189725229609 2.07954330406661 1.7164484414518 1.65043119370366 2.12905623987772 1.51839669820737 -0.297077614866658 -0.511633670048134 -1.32034495496293 -1.38636220271107 -1.38636220271107 -1.38636220271107 -1.25432770721478 -0.643668165544427 0.148538807433329 0.528137981985171
MMP0211 -0.436412124284175 0.902524177982303 -0.773757862613277 -0.016891715573633 -0.214949255244444 0.00651361379528611 0.0195408413858585 -0.0065136137952862 -0.46246657946532 0.384303213921885 -2.15600616623973 -1.59583537984512 -1.50464478671111 -1.54372646948283 -0.214949255244444 1.00961013826936 1.06171904863165 1.71308042816027 0.970528455497643 -0.0586225241575758 0.319167075969023 1.06171904863165 1.30923637285253 2.32536012491717 2.66406804227205 2.0778428006963 2.24719675937374 0.801174496820202 -0.0195408413858586 -0.384303213921886 -0.51457548982761 -0.775120041639057 -0.592738855371044 -0.293112620787879 -0.41035766910303 0.241003710425589 -0.175867572472727 -0.73603835886734
MMP0361 0.382001979867898 0.153761739321251 1.0666655443486 0.807933005773041 -0.390117483722497 -0.542509483115339 -0.501871616610581 0.575031845765497 0.209291047222678 -0.481552683358202 -0.51203108323677 -1.04032334779862 -0.105652418189194 -0.33932015059155 0.483596646129792 0.300726246858383 1.21507824321543 1.50970277537492 1.37762970923446 -0.207247084451088 -0.115811884815383 0.575031845765497 0.493756112755982 2.88123076991049 1.89576250717012 2.98282543617239 2.78979557027479 1.29635397622494 -1.00984494792005 -1.24351268032241 -1.22319374707003 -0.705060949134369 -1.19271534719146 -1.10128014755576 -0.796496148770074 -1.11143961418195 -0.725379882386748 -0.623785216124854
MMP0365 0.121374276456024 0.485405236530843 0.121914487614471 -0.208803419146703 -0.327342745593518 -0.364122829368071 -0.268494611554234 -0.334698762348429 -0.386190879632803 0.224358511024771 -0.945248153006003 -0.246426561289503 -0.180222410495308 -0.180222410495308 0.319986728838608 0.599515365525208 0.143442326720755 0.76870375088815 0.128730293210934 -0.06988215917165 0.0551701256618289 0.283206645064055 0.481819097446639 0.871687985456897 0.90846806923145 0.739279683868508 1.15857263889841 0.0919502094363815 -0.415614946652445 -0.592159348770297 -0.680431549829224 -0.673075533074313 -0.467107063936818 -0.246426561289503 -0.378834862877892 -0.128730293210934 -0.584803332015387 -0.658363499564492
MMP0375 -0.0595984323073465 0.861944845278764 -0.272257431819752 1.31685918739367 -1.72835453691305 -1.0578721734554 -0.096847452499438 -0.171345492883621 0.57363491095821 -0.350140789805661 0.141546276729948 -1.869900813643 -0.558735302881373 -0.379940005959334 0.640683147303975 0.96847452499438 0.543835694804537 -0.260743141344641 1.40801296326106 -0.126646668653111 -0.253293337306223 0.0595984323073465 0.126646668653111 2.51058396094697 0.893976484610197 2.70427886594585 2.47333494075488 0.536385890766118 -1.03552276134015 -1.14726982191642 -1.0578721734554 -0.648132951342393 -0.864177268456524 -0.57363491095821 -0.692831775572903 -0.581084714996628 -0.804578836149178 -0.640683147303975
MMP0463 -0.193203511293829 0.491875256210914 -0.785002253557377 -0.266584698964917 0 0.807941956319649 0.632302400597986 0.263459333582494 0.193203511293829 1.28216875676814 -2.28331422438162 -0.632302400597986 -0.61473844502582 -1.05383733432998 -0.0175639555721663 -1.5631920459228 0.983581512041312 1.80908742393313 0.386407022587658 -0.193203511293829 -0.228331422438162 0.368843067015492 0.61473844502582 1.73883160164446 1.98472697965479 1.58075600149497 1.65101182378363 0.860633823036148 -0.193203511293829 -0.632302400597986 -0.895761734180481 -1.00114546761348 -0.807941956319649 -0.562046578309321 -1.08896524547431 -0.878197778608314 -1.29973271234031 -1.07140128990214
MMP0475 -0.10958632562866 -0.235221924801196 0.92041595990384 1.18082106890374 0.0136982907035826 -0.0821897442214953 -0.0136982907035825 0.0273965814071651 -0.0410948721107476 1.10956154699019 -0.75340598869704 -0.726009407289875 -0.739707697993458 -0.780802570104205 0.69861282588271 0.80819915151137 0.876690605029283 2.5889769429771 1.27394103543318 0.547931628143302 0.616423081661215 1.01367351206511 1.1780530005081 2.34240771031262 2.54788207086635 2.08214018694455 2.53418378016277 0.739707697993458 -0.602724790957632 -1.01367351206511 -1.32873419824751 -1.39722565176542 -0.876690605029283 -0.369853848996729 -0.80819915151137 -0.383552139700311 -1.24654445402601 -1.20544958191526
MMP0594 -0.0536109649424206 0.360849737582567 0.334336480822549 -1.37219551660716 -0.773529637026354 -0.268054824712103 -0.0689283834973979 -0.268054824712103 -0.375276754596944 0.880751566911195 -0.880751566911195 -0.834799311246263 -0.819481892691286 -0.834799311246263 1.20241735656572 1.20241735656572 0.804164474136309 1.69257475032499 0.405911591706899 -0.0689283834973979 0.436546428816853 1.01860833390599 1.12583026379083 1.7538444245449 2.04487537708947 1.87638377298472 2.33590632963404 0.773529637026354 -0.742894799916399 -1.15646510090079 -1.40154379778042 -1.4168612163354 -0.804164474136309 -0.359959336041967 -0.559085777256672 -0.00765870927748866 -0.819481892691286 -0.987973496796036
MMP0739 -0.153940011321808 0.284451294447004 0.850704644251697 0.305319438395812 0.0018407680007875 0.188777703187902 0.453605028036314 -0.185096167186327 0.204355781120162 1.31039931431059 -1.16651507691868 -1.64943549281872 -1.13535892105416 -0.77706312861219 0.157621547323383 1.01441583359766 0.9209473660041 1.6531170288203 1.02999391152992 0.765166586681505 1.10788430119121 1.45060201570092 1.54407048329448 2.55664554889135 2.26066206817842 1.96467858746549 2.83705095167202 0.671698119087948 -0.527813881696037 -1.02631237552834 -1.21324931071546 -0.979578141731563 -0.839375440341228 -0.621282349289594 -0.481079647899258 -0.465501569966999 -0.574548115492815 -0.527813881696037
MMP0758 0.266261941835311 -0.583648878087582 0.486880157588283 -0.181320771618148 -1.42222842102276 0.785797438099332 0.74683227587953 0.396145815901316 0.0194825811099008 1.03257679882474 -1.13648389807755 -0.98062324919834 -0.941658086978538 -0.759820663286131 -0.279250329241911 -0.305227104055112 1.00660002401154 1.48717035805576 0.305227104055112 0.25327355442871 1.11050712326435 1.20142583511055 0.526029689967321 1.42222842102276 1.57808906990196 1.18843744770395 1.81188004322077 1.04556518623134 -0.629936789220126 -1.20142583511055 -1.61705423212177 -1.55211229508876 -1.34429809658315 -0.889704537352136 -1.04556518623134 -0.720855501066329 -1.48717035805576 -1.14947228548415
MMP0759 0.144662321588608 0.756723685711077 -1.078027925629 -1.06426685863646 -0.156235307315697 0.57286279349089 0.549716822036712 0.329830093222027 0.248819193132407 1.0705011797557 -1.90375615210609 -1.08207416548279 -1.05892819402861 -0.954771322484816 -0.167808293042786 -0.0405054500448104 0.815895493759752 1.46398269447672 0.734884593670131 1.30196089429748 1.76488032338102 1.44083672302254 0.734884593670131 1.29038790857039 1.42926373729545 0.850614450941018 1.52184762311216 0.839041465213929 -0.873760422395195 -1.30196089429748 -1.49870165165798 -1.51027463738507 -1.35982582293292 -0.989490279666082 -1.29038790857039 -1.12836610839115 -1.55656658029343 -1.18623103702659
MMP0825 -0.0320112938364595 -0.719038757701133 0.0320112938364594 -0.287811016453162 -0.235064490234364 -0.0320112938364595 0.138291387013396 0.622999017124523 0.747450976207109 0.0662402528076878 0.151391593232616 -0.392266964865 -0.241614593343974 -0.300565521330462 1.69721592710053 -0.516718923947586 1.48106252448341 1.8085676799639 1.76271695819663 0.328244377192081 0.321694274082471 0.675399842001401 0.570598192247644 2.34567613495191 1.95922005148493 2.22777427897893 1.88061881416961 1.50726293692185 -0.647720986139783 -0.804923460770419 -1.01452676027793 -0.929375419853005 -0.824573770099248 -0.634620779920563 -0.955575832291444 -0.935925522962615 -1.14552882247013 -0.890074801195346
MMP0828 -0.468469451184559 -0.0171628976067521 -0.529871764724985 -1.07155756830306 -0.138933214504741 0.20794703463191 -0.0348691397637455 -0.0695571646774106 -0.381749388900396 1.00577160764621 0.450763209027565 -0.641909575752884 -0.520501488555056 -0.728629638037047 0.69357938342322 0.867019507991546 1.28327580695553 2.08110037996982 0.624203333595891 -0.277685314159401 0.190603022175077 0.572171296225393 0.4160751841139 1.42202790661019 2.28922852945181 2.06375636751299 1.83828420557417 1.0578036450167 -0.745973650493879 -0.850037725234874 -1.43973414876718 -1.45707816122401 -0.832693712778042 -0.468469451184559 -0.850037725234874 -0.121589202047908 -1.30098204911252 -1.45707816122401
MMP0845 0.532904961953318 1.67703513962286 -1.10718875072575 0.0231466363140541 -0.471077090473881 -0.347510068636687 -0.50196884593318 -0.440185335014583 -0.795440522796515 0.254879162819632 -0.270280679988441 -0.610089990040724 -0.48652296820353 -0.965345177822656 0.641026106060862 0.594688472871915 0.841822516546302 1.96937159081069 0.903606027464899 0.68736373924981 1.22796945978753 1.13529419340964 1.18163182659858 1.92303395762175 2.09293861264789 1.27430709297648 1.73768342486596 0.641026106060862 -1.02712868874125 -1.42872150971213 -1.56773440927898 -1.72219318657547 -0.965345177822656 -0.50196884593318 -0.857224033715112 -0.362955946366337 -1.28970861014529 -0.903561666904059
MMP0908 0.636174716478114 1.05533648903583 -1.4039270850222 -0.608238122809497 -0.0168895942427818 -0.118227159699472 0.242084184146539 0.12948688919466 -0.0844479712139089 0.0168895942427818 -0.377200938088793 -1.18790146174232 -0.973966601333749 -0.591135798497362 -0.230824454651351 1.09782362578082 0.377200938088793 1.8522255019584 0.850109576886683 0.0394090532331575 0.951447142343374 1.17664173224713 0.692473363954053 1.27797929770382 1.19916119123751 1.46939469912202 1.27797929770382 0.489798233040672 -0.895148494867435 -1.36805713366532 -2.17875765731885 -2.32513414075629 -2.17875765731885 -1.80718658397765 -1.26671956820863 -0.951447142343374 -0.298382831622478 -0.624914986982926
MMP1020 -0.420991176944245 1.44935176266865 -1.60354455245782 1.30994769127358 0.157871691354092 0.122789093275405 0.491156373101619 0.403449877904901 0.192954289432779 1.10510183947864 -1.78921250201304 -1.99970809048516 -1.64888210969829 -1.24543223179339 -0.228036887511466 -0.333284681747527 0.456073775022932 2.10495588472122 0.403449877904901 -0.403449877904901 0 0.420991176944245 0.701651961573741 1.73658860489501 2.19266237991794 1.38576262410814 2.99956213572774 0.315743382708184 -0.0877064951967177 -0.350825980786871 -0.982312746203238 -0.877064951967177 -0.456073775022932 0.0175412990393435 -0.228036887511466 0.263119485590153 -0.666569363495054 -1.12264313851799
MMP1173 -0.172470612659534 1.40400367282176 -1.35122468505576 0.0804889166595278 -1.66261670603791 0.00689882450638138 0.20006591068506 0.186268261672297 -0.227661208710585 0.600197732055179 -0.600197732055179 -0.710578924157281 -0.724376573170044 -0.600197732055179 0.779567169221095 -0.0482917715446696 0.282851804761636 1.99376028234422 0.448423592914789 -0.420828294889264 -0.0344941225319068 0.641590679093468 1.06931779848911 1.93856968629317 2.22832031556118 0.765769520208332 3.45631107769707 0.0482917715446696 -0.710578924157281 -0.931341308361485 -1.2210919376295 -1.3314731297316 -0.751971871195569 -0.296649453774399 -0.724376573170044 -0.131077665621246 -1.09691309651464 -1.26248488466779
MMP1180 -0.478085556895108 -0.843408780745299 -1.29788697608888 -1.00929333043317 -0.159361852298369 -0.276786375044536 -0.377435965969822 0.276786375044536 -0.00838746591044049 -0.0251623977313215 -1.18263269337211 -0.796809261491846 -0.796809261491846 -0.67938473874568 0.109037056835726 0.293561306865417 1.48458146614797 2.92722560274373 1.19940762519299 0.830359125133608 0.645834875103918 0.662609806924798 0.679384738745679 1.76975530710294 2.44075257993818 1.46780653432709 2.30655312537113 1.46780653432709 -0.17613678411925 -0.662609806924799 -0.662609806924799 -0.612285011462156 -0.360661034148941 0.0922621250148453 -0.410985829611584 -0.142586920477488 -1.14908282973035 -1.0148833751633
MMP1296 -0.00822018769447708 2.18235814916188 -0.0330823426609277 0.0654036603451006 -0.484991073974147 0.106862440028202 0.123302815417156 0.583633326307872 -0.205504692361927 1.12616571414336 -2.01394598514688 -0.780917830975322 -0.682275578641597 -0.254825818528789 0.797358206364276 -0.419229572418331 0.715156329419505 1.8659826066463 -0.00822018769447708 -0.33702769547356 -0.156183566195064 0.682275578641597 0.830238957142185 2.42495536987074 2.2605516159812 1.91530373281316 2.0797074867027 0.682275578641597 -0.106862440028202 -0.452110323196239 -0.912440834086955 -0.978202335642772 -0.879560083309047 -0.616514077085781 -1.02752346180963 -0.961761960253818 -1.24124834186604 -1.04396383719859
MMP1476 0.315471833748347 2.04414865299567 1.3319000152352 -0.502657661068554 -0.202225534454069 -0.0889792351597903 -0.299293790992022 -0.153691406185092 -0.428718133042626 0.768457030925461 -1.88474198111192 -0.962593544001367 -0.816991159194437 -0.639032688874857 0.315471833748347 -0.461074218555277 0.978771586757692 2.32154913553271 0.202225534454069 -0.315471833748347 0.169869448941418 0.816991159194437 1.05966180053932 0.347827919260998 2.41861739207066 1.96563219489355 2.56421977687759 0.833169201950763 -0.299293790992022 -0.719922902656484 -1.28615439912788 -1.48029091220378 -0.978771586757692 -0.55814247509323 -0.461074218555277 0.218403577210394 -0.687566817143833 -0.800813116438112
MMP1529 -0.534958553342145 0.932584853879056 0.586100306844923 0.30302469805262 -0.518241098550203 0 0.16717454791942 -0.351066550630783 -0.267479276671072 0.886025103972928 -1.06991710668429 -1.28724401897954 -1.00304728751652 -0.969612377932638 0.234044367087188 1.50457093127478 0.133739638335536 1.55472329565061 0.81915528480516 0.0668698191677681 0.234044367087188 0.752285465637391 0.90274255876487 1.93922475586528 1.95594221065722 1.7887676627378 2.65807531191878 -0.16717454791942 -0.969612377932638 -0.90274255876487 -1.28724401897954 -1.40426620252313 -0.685415646469623 -0.300914186254957 -0.651980736885739 -0.217326912295246 -0.852590194389044 -1.10335201626817
RNA_33 0.285578488181126 0.0921465213448057 -0.0135081257394993 0.222407047731281 -2.55693595481136 -0.66859889526471 -0.415041268894488 -0.3149527321694 -0.121448227834231 -0.942174228979949 -0.301607593939388 -1.36254608322532 -0.441731545354511 -0.955519367209961 -0.321625301284406 0.205507658801056 2.03379159631266 1.70683570967737 1.6267648802973 0.0854014147309506 -0.268244748364359 0.399012163136225 0.932817692336693 1.98708361250762 2.38743775940797 2.21395096241782 1.84695966109249 2.22062353153282 -0.361660715974441 -0.922156521634932 0.0453660000409155 0.425702439596249 -0.695289171724733 -0.648581187919692 -0.0280322602241487 -0.461749252699529 0.759330895346541 0.732640618886517
Unanno_38 0.19423539794646 0.33745737994864 -0.872413230126345 -0.0393536768987159 -0.119680396714486 0.402204611909337 0.696500669403974 0.971176989732301 0.990796726898611 0.00980986858315457 -0.661185142504617 -0.661185142504617 -0.543466719506763 -0.394356717042813 -0.0215817108829401 -1.0535798858308 0.625869615605261 0.869154356467494 1.01826435893144 0.951557252565992 1.00649251663166 1.36357173305848 1.65786779055312 2.03064279671299 2.06203437617909 2.23076411580935 2.11696964024475 0.661185142504617 0.366889085009981 0.0333535531827255 -0.614097773305475 -1.11636304476299 -1.63824805338681 -1.89722858398209 -1.68925937001922 -1.75596647638467 -1.23800541519411 -0.47283566570805
[+] Show/hide bicluster #45 motif PSSM #1. bicluster 45 motif PSSM #1 Methanococcus maripaludis S2 18x4
POSITION A C G T
1 0.666667 0.333333 0 0
2 0.333333 0.166667 0.5 0
3 0 0 0 1
4 0 0 0 1
5 0 0.5 0 0.5
6 0.833333 0 0 0.166667
7 0 0.166667 0 0.833333
8 0.5 0 0.5 0
9 0.166667 0.166667 0.166667 0.5
10 1 0 0 0
11 0 0 0 1
12 1 0 0 0
13 0 1 0 0
14 0.666667 0 0 0.333333
15 0.333333 0.5 0.166667 0
16 0.166667 0.833333 0 0
17 0 0.5 0.5 0
18 0 0.5 0.5 0 [+] Show/hide bicluster #45 motif PSSM #2. bicluster 45 motif PSSM #2 Methanococcus maripaludis S2 14x4
POSITION A C G T
1 0 0 1 0
2 0 0 1 0
3 0 0 0.5 0.5
4 0.75 0 0.25 0
5 0 0 0.25 0.75
6 0 0.25 0.75 0
7 0 0 1 0
8 0 0 0 1
9 0.5 0 0 0.5
10 0 0.75 0.25 0
11 0.25 0.5 0 0.25
12 0 1 0 0
13 0.25 0.25 0.25 0.25
14 0 0.5 0.5 0 |