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bicluster 41
Methanococcus maripaludis S2
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bicluster 41 genes
Methanococcus maripaludis S2
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bicluster 41 short names
Methanococcus maripaludis S2
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bicluster 41 long names
Methanococcus maripaludis S2
24
long_name
[+] Show/hide bicluster #41 rows (NCBI RefSeq gene IDs).
bicluster 41 NCBI RefSeq IDs
Methanococcus maripaludis S2
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bicluster 41 upstream sequences
Methanococcus maripaludis S2
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upstream
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bicluster 41 arrays
Methanococcus maripaludis S2
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bicluster 41 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_HighH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_minus30m
MMP0026 -0.0490006327509907 0.757373264232736 0.0164878309093189 0.0969459700566443 0.124838128049575 -0.301053660087125 -2.99224457557324 -3.45380614268167 -0.0400914267962652 0.0668190446604419 -0.218275545890777 -0.343004429256935 -0.63700822576288 -0.601371401943978 -0.619189813853429 -0.55682537217035 -0.583552990034526 -0.423187282849466 -2.16048244402096 0.521188548351447 0.735009491264861 0.307367605438033 0.209366339936051 0.0044546029773628 -0.200457133981326 -0.485551724532545 -1.00228566990663 -0.245003163754954 -0.120274280388795 0.405368870940015 1.18046978900114 2.30302973929657 2.50794147625525 1.7239313522394 1.24283423068422 0.868647580585745 -0.0044546029773628
MMP0108 -0.0769793615903941 -0.112020366986342 -1.13609299173227 -0.771384104258229 -0.157653543049468 0.371049570901431 -2.97033274027119 -3.01311384283037 0.562541488545188 0.846772977494336 -0.183566169946324 -0.562541488545188 -0.598070424663831 -0.384896807951971 -0.62175638207626 -0.75202914784462 -0.680971275607333 -0.586227445957617 0.112508297709038 -0.562541488545188 0.183566169946324 0.313838935714684 0.159880212533896 0.396739786658185 1.26127723221184 -0.740186169138405 0.0769793615903942 0.609913403370046 -0.100665319002823 0.159880212533896 0.586227445957617 0.313838935714684 0.0651363828841797 0.0769793615903942 0.396739786658185 0.254624042183611 -0.301995957008469
MMP0141 -0.389087147516289 -0.260462989904127 -0.709794452618381 -0.238976432982711 0.00278833181422957 -0.00278833181422956 -3.21232222047344 -3.94155298875649 -0.133002459320684 0.373718306683386 0.362821085909105 0.0576989042292347 -0.19293717357923 -0.481713524097679 -0.285563550160619 -0.0730677450621382 0.0740447353906564 0.193914163907748 -1.09740649784456 -0.830424588874673 1.56696398146716 0.542625228684743 0.0740447353906564 -0.383638537129149 0.232054436617732 0.0685961250035158 -0.645171835711895 -0.955742627778906 0.0849419561649375 0.357372475521964 0.787812696106067 1.40350566985295 1.45799177372435 1.14742098165734 0.760569644170364 0.324680813199121 0.0740447353906564
MMP0142 -0.295903346003766 -0.366722490317435 -0.662904249405265 -0.257078281424343 -0.0554875441873278 -0.105427528347074 -3.66011714056425 -2.94478531290358 0.0825176126635658 0.481211122688076 0.454181054211839 0.0960326469016847 -0.147237969384457 -0.410781137027778 -0.268873277527528 -0.0593902468366838 0.109547681139804 0.258213057759113 -0.877049818242884 -0.539173962289909 1.73135178971408 0.562301328116791 0.150092783854161 -0.512143893813671 0.57581636235491 -0.802717129933229 -0.667566787552039 -0.735141958742634 0.271728091997232 0.508241191164315 1.06911511204625 1.45429358783265 1.40699096799923 1.10290269764155 0.609603947950207 0.258213057759113 0.373090848783124
MMP0144 0.0505497023646592 0.514648771680559 -0.120875110456193 0.0380058600779948 -0.266960298128568 -0.422908892901367 -2.60938825399158 -2.68296400544701 -0.409939222337141 0.652727526974706 -0.409939222337141 -0.0380058600779945 -0.711028134642164 -0.480783672291264 -0.657894797176572 -0.126561422520649 -0.0911391975435869 -0.232828097451833 -0.0911391975435869 -0.356805884871549 0.635016414486175 0.546460852043521 0.599594189509113 -0.321383659894487 -0.16198364749771 1.73310538877508 -0.498494784779795 -0.0557169725665253 -0.711028134642164 0.493327514577929 0.670438639463236 1.34346091402741 1.78623872624068 1.80394983872921 1.55599426388978 1.8570831761948 -0.409939222337141
MMP0146 0.157919451708207 0.461958361021861 0.361176769454248 0.399968179373188 0.39141124439782 0.497707307417748 -2.89102653850303 -0.679345742796726 -0.132652339434894 -0.0315838903416413 -0.852765039224318 -0.675895253311126 -0.6253610287645 -0.701162365584439 -0.776963702404379 -0.751696590131065 -0.524292579671247 -0.372689906031369 -0.208453676254833 0.284255013074773 0.688528809447783 0.322155681484742 -0.0947516710249241 -0.448491242851308 -0.499025467397934 0.688528809447783 -0.271621456938116 -0.637994584901156 -0.107385227161581 0.360056349894712 0.511659023534591 0.612727472627843 0.789597258541035 0.827497926951005 0.776963702404379 0.814864370814348 -0.14528589557155
MMP0216 0.0214701327623275 1.24227468856246 -0.184628123398149 -0.679382567107846 -1.19740435471807 -0.774714078838071 -3.30988622880307 -3.3452720026789 -0.139555862955129 -0.139555862955129 -0.880275443255429 -0.794394912206118 -0.858805310493101 -0.536753319058188 -0.375727323340732 -0.504548119914697 -0.708514381156808 -0.568958518201679 0 0.354257190578404 -0.633368916488662 0.289846792291422 -0.25764159314793 0.279111725910258 1.01983130621056 -0.772924779443791 -0.0536753319058188 1.07350663811638 0.118085730192801 0.644103982869826 1.47070409421944 1.82496128479784 1.80349115203551 1.44923396145711 1.39555862955129 0.65483904925099 0
MMP0493 -0.297954924872573 -0.440187026660443 0.230930431902762 0.0935764598294123 -0.740220134553721 0.209474370596496 0.219674793184721 -0.269417877142909 -0.4264845003078 -1.10418589805718 -0.297954924872573 -0.286270418014825 -0.461538020881044 -0.0876338014331097 -0.0642647877176138 -0.297954924872573 -0.286270418014825 -0.519960555169784 0.204478870010589 0.765335199182491 -1.60661969294034 0.800388719755735 0.870495760902223 1.16260843234592 1.12755491177268 -0.0175267602866219 0.66017463746276 -2.65822531013766 0.0175267602866219 -0.146056335721849 -0.192794363152841 -0.0759492945753617 0.204478870010589 0.0175267602866219 0.169425349437345 -0.111002815148606 -0.0408957740021179
MMP0610 -0.0791159894563796 0.710383803981176 0.0242676739843332 0.207445976959331 0.00645723379024072 -0.0146667766725202 -3.4028958807391 -2.96571171029631 0.292385178425751 -0.0447177331709972 -0.154792153284221 -0.19607006082668 -0.374940993510668 -0.368061342253592 -0.368061342253592 -0.457496808595586 -0.319903783454056 -0.19607006082668 -0.691404951336187 0.0722363381993031 -0.00343982562853824 0.19607006082668 -0.085995640713456 -0.099754943227609 -0.0722363381993031 -0.471256111109739 -0.491895064880969 -0.120393896998838 0.395579947281898 1.22801774938815 1.71647298864058 2.2393264841784 2.56267009326099 2.32876195052039 2.03981659772318 1.73711194241181 0.402459598538974
MMP0670 -0.408002066675556 0.148519411171557 -1.29879697418929 -0.866606589670549 -1.37144666897828 -0.538929799003155 -1.62543094236687 -1.05825347439244 0.207850109438491 0.300227935855598 -0.0769815220142559 -0.215548261639917 -0.323322392459875 -0.307926088057024 -0.38490761007128 -0.554266958502643 -0.546568806301217 -0.292529783654173 -0.300227935855598 -0.469587284286961 1.33947848304805 0.708230002531155 0.546568806301217 0.531172501898366 0.484983588689812 -0.515776197495515 -0.169359348431363 0.569663262905494 -0.107774130819958 0.484983588689812 0.946872720775348 1.85525468054357 2.59427729188043 2.79442924911749 1.88604728934927 1.00075978618533 -0.0153963044028512
MMP0861 -1.10225644049384 0.77086778647186 0.409683189407115 -0.173735037120964 -0.506938998004765 -0.744847648414999 -1.90011096849052 -0.857502670525705 -0.386884710901812 -0.698339069363648 -1.05359169698418 -1.07305759438804 -1.01465990217645 -0.87353214599843 -0.922196889508092 -1.03899227393128 -1.08765701744094 -0.91246394080616 -0.265222852127657 -0.557211313185628 -0.284688749531522 0.313887595637319 0.557211313185628 0.459881826166304 0.177626313810266 -0.547478364483696 -0.1727598394593 0.211691634267029 0.927063363859058 1.74463105482138 1.75923047787428 1.91982413145616 2.10961663114384 1.92469060580713 2.00255419542258 2.07068483633611 0.941662786911956
MMP0862 -1.09778766932684 0.333999527671741 0.111616876334363 -0.40922174027173 -1.08710279873048 -0.943994572636989 -1.62526504270578 -1.80038431311761 -0.478522830219392 -0.810048451155703 -1.09778766932684 0.734986046415406 -1.01021486379649 -0.935152459056197 -1.05400126656167 -1.12280847090694 -1.12906367130196 -1.03523566537659 -0.309632419553724 -0.578606036539788 -0.491033231009441 0.228314814418403 0.484778030614417 0.372184423503971 0.0281484017776112 -0.353418822318897 -0.0469140029626855 0.128231608098007 0.63490284009501 1.41054768907808 1.42931329026315 1.79837011356961 1.9735157246303 1.82964611554473 1.9234741214701 2.21121333964124 0.666178842070134
MMP0866 -2.32244469169189 0.187833082915998 0.203506329472676 -0.156546395315727 -0.11612916707175 0.0391223618125097 -1.92256336462391 -3.16235417427565 -1.09255341630342 -0.715386758517624 -0.4940063289477 -0.383316114162739 -0.268526261793148 -0.309522637639431 -0.239828798700751 -0.141437496669674 -0.145537134254302 -0.211131335608353 -0.949066100841433 -1.82228890636724 -0.571899443055637 0.899870449825894 1.17044653041136 0.973663926349202 0.690788933009855 -0.317721912808687 -0.0266476443000834 0.403814302085879 1.12125087939582 1.05975631562639 0.961365013595317 1.0023613894416 0.940866825672176 0.657991832332829 0.502205604116957 0.555500892717124 1.1335497921497
MMP0867 -2.58744288986025 -0.198666410686858 0.0475979123532041 -0.396937363208667 -0.527792211571127 -0.606146029185181 -3.00369326591901 -1.75719143377704 -1.35868277705853 -0.993137653895298 -0.869821226804085 -0.742100641602473 -0.645209163173664 -0.676038269946466 -0.482255313088847 -0.477851154978447 -0.447022048205644 -0.451426206316044 -1.31023703784413 -2.0413272841706 -0.790546380816878 0.856608752472884 1.16049566209051 0.953500230901694 0.570338475296856 -0.0506478182696049 -0.0330311858280032 0.30608898867283 0.830183803810482 0.702463218608869 0.698059060498469 0.755313115933674 0.794950538927278 0.491063629309648 0.262047407568826 0.310493146783231 0.834587961920882
MMP0868 -2.47979934345717 0.0226251816017399 0.0965130977258344 -0.366914462922201 -0.582869779065223 -1.03632769207756 -4.77711431079784 -0.793197065990907 -0.599526941341709 -0.12411715785229 -1.05356999298891 -0.989469797462245 -0.749094064237257 -0.807852576803365 -0.781144162000589 -0.80251089384281 -0.797169210882255 -0.727727332395036 -0.797169210882255 -1.58773828904444 -0.0226251816017398 -0.0653586452861819 0.191042136820471 -0.134800523773401 0.458126284848235 0.981611214982652 0.532909846296009 0.885460921692657 0.297875796031577 0.394026089321572 0.420734504124348 0.522226480374898 0.693160335112667 0.650426871428225 0.677135286231001 0.783968945442107 0.303217478992132
MMP1150 -0.551126851801497 0.961452726062154 0.883729498678978 0.365634818132796 -0.349202419919483 0.353011557117746 -2.42699114705371 -3.49041070345007 0.191696296278781 -0.0838671296219669 -0.670937036975735 -0.742823148080278 -0.706880092528007 -0.491221759214377 -0.299525462935596 -0.886595370289364 -0.814709259184821 -0.730842129562854 0.443297685144682 0.0359430555522715 -1.21008287025981 -0.31150648145302 -0.527164814766649 -0.191696296278781 1.49762731467798 -0.167734259243934 0.515183796249225 1.06631064805072 -0.0239620370348477 -0.143772222209086 -0.0359430555522715 0.287544444418172 0.634993981423464 0.898576388806788 1.32989305543405 1.0064055554636 -0.143772222209086
MMP1200 1.01076939860653 1.13270121624113 -0.291138083572864 -0.0431236474152062 0.034148284209305 -0.126305889484318 0.664472719986418 1.34536320006479 -0.210879946471865 0.0872606675055995 -0.0145434445842666 -0.210879946471865 -0.0145434445842666 0.0290868891685331 0.0436303337527997 -0.0436303337527998 0.0145434445842665 -0.0509020560449331 0.61809639483133 -0.247238557932532 -0.589009505662797 -0.734443951505462 -0.727172229213329 -1.17074728903346 -0.239966835640399 0.465390226696531 -0.174521335011199 -0.647183283999863 1.16347556674133 0.959867342561594 1.33072517946039 1.78157196157266 2.15970152076359 2.24696218826919 2.06516913096585 2.34876630035905 1.27982312341546
MMP1334 -0.406287289009806 1.10890540781152 -1.75543269773093 -0.472530929451059 -0.219026719676315 -0.0963514368759644 -2.83449336165977 -4.69463606928694 -0.0246234720612003 -0.258546456642604 -0.627898537560609 -0.541716385346408 -0.73870416183601 -0.578651593438208 -0.73870416183601 -0.824886314050212 -0.763327633897211 -0.430910761071006 -0.590963329468808 0.344728608856805 0.578651593438208 0.443222497101606 0.135429096336602 0.0492469441224007 0.0615586801530009 0.751015897866611 0.0246234720612003 -0.184676040459003 -0.270858192673204 0.0984938882448014 0.406287289009806 1.16961492290702 1.55127873985562 1.71133130825342 1.53896700382502 1.20655013099882 -0.233922984581403
MMP1441 -0.157899800637895 0.00925462180757924 -0.157426676546876 0.239089729749023 -0.0238985840282219 -0.145324736069005 -1.93061467698376 -2.91026138345506 -0.5159995496382 -0.0362810179585458 0.328575330079501 -0.103847008335962 -0.387624167921109 -0.657888129430774 -0.293031781392727 -0.157899800637895 -0.333571375619176 -0.0633074141095122 -0.624105134242066 -0.68491452558174 -0.0227678198830626 0.815050460796897 0.781267465608189 0.28127913681531 1.22044640306139 0.0515547695320951 -0.529512747713683 -0.130873404486928 0.808293861759155 1.38260477996719 2.05150808470361 2.24069285776038 2.24069285776038 1.54476315687299 0.882616451174313 0.24073954258886 0.815050460796897
MMP1585 0.165214411077728 1.00048431457096 -0.393750645168481 0.232081479482491 -0.00524974885010447 -0.378272521581573 -2.99820286168807 -3.48696760873245 0.736516776176385 0.325179073305352 0.690812586968492 0.0395278907560237 -0.48607028513474 -0.543200521644606 -0.874555893401827 -0.931686129911693 -0.977390319119585 -0.66888704196631 -0.440366095926848 -0.588904710852499 0.0966581272658894 -0.314679575605143 -0.394661906718955 -0.154714913377519 -0.394661906718955 -1.20591126515905 -0.714591231174203 0.130936269171809 0.06237998535997 0.987889816819794 1.67345265493818 2.22190292543289 2.0048080266954 1.5820442765224 1.13642843174544 1.10215028983953 0.0166757961520775
MMP1612 -0.685851985359196 0.537117388082071 -1.00102466570033 -0.852184322517101 -1.41526255500892 -0.508706593090372 -1.82368196288454 -0.585848306415127 -0.261870758046239 -0.162110469266719 -0.261870758046239 -0.511271479995037 -0.660911913164317 -0.374101082923198 -0.685851985359196 -0.935252707307995 -1.19712346535423 -0.511271479995037 -0.274340794143679 1.77074512583647 -1.30935379023119 0.760672201943836 0.573621660482237 1.01007292389263 0.0374101082923198 -0.0374101082923198 0.187050541461599 2.85563826631375 -0.0374101082923198 0.261870758046239 0.835492418528476 1.65851480095951 2.11990613656479 1.87050541461599 1.64604476486207 0.847962454625915 -0.112230324876959
MMP1651 -0.867568238947705 -0.939652301741496 -0.228578969194086 -0.299116074470666 -0.596261477157831 -0.891354058062835 -1.21695379715667 -2.03819502869685 -0.409158820115075 -0.371273744178494 -0.469774941613605 -0.401581804927759 -0.424312850489707 -0.420524342896049 -0.352331206210204 -0.287926577118016 -0.121232242997059 0.35990822139752 -0.481140464394579 -0.409158820115075 -0.723604950388698 0.174271349308273 0.250041501181435 0.2803495619307 0.867568238947705 -0.143963288559008 -0.00378850759365811 0.344754191022887 2.58376217887483 2.39812530678558 2.11777574485488 1.916984842391 1.79196409180028 1.41311333243447 1.34113168815497 1.26157302868815 2.57618516368751
MMP1700 -1.1906207747267 1.8657535335936 0.148911683485106 0.393636700674105 0.819394302285948 0.61108126672609 -2.68346074899248 0.113869439013355 -0.621852888710761 0.166838579898009 -1.2892072083028 -1.48638007545499 -1.17545363109961 -1.23612220560798 -1.14511934384543 -1.06170005389642 -0.894861473998412 -0.819025755862953 -0.872110758557774 -0.273008585287651 0.720439322286857 0.12892072083028 0.182005723525101 -0.0227507154406376 -1.41812792913308 0.417096449745022 -1.44846221638726 -1.54704864996336 0.0227507154406375 0.212340010779284 0.371595018863747 0.159255008084463 0.364011447050201 0.417096449745022 0.56876788601594 0.894861473998412 -0.0227507154406376
Unanno_28 -2.65678629856911 0.315931912758903 1.25597730276744 1.27446421576574 0.146079830829554 -1.65647967039879 -1.05653662962305 0.364339186468086 -1.30382826885682 -1.11864686255542 -1.13376371204941 -1.05440025220595 -0.903231757266028 -0.925907031507016 -0.842764359290059 -0.634907678747668 -0.570661068398202 -0.619790829253676 -0.797413810808083 0.253207229024368 -0.404375723964289 -0.0566881856024704 0.151168494939921 -0.0944803093374507 -0.00377921237349803 0.00755842474699605 0.468622334313755 1.46255518854374 1.98786570845996 1.84803485064053 1.7271000546886 1.56837313500168 1.47767203803773 0.967478367615494 0.740725625205612 1.01282891609747 2.1012420796649
[+] Show/hide bicluster #41 motif PSSM #1. bicluster 41 motif PSSM #1 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0.222222 0 0.777778 0
2 0.111111 0.444444 0 0.444444
3 0.222222 0 0.222222 0.555556
4 0 0.333333 0.666667 0
5 0 1 0 0
6 0 0 0 1
7 0 0 1 0
8 0.555556 0.333333 0 0.111111
9 0.888889 0 0.111111 0
10 0.888889 0 0.111111 0
11 0 0.444444 0.222222 0.333333 [+] Show/hide bicluster #41 motif PSSM #2. bicluster 41 motif PSSM #2 Methanococcus maripaludis S2 19x4
POSITION A C G T
1 0.111111 0 0 0.888889
2 0.888889 0 0 0.111111
3 0 0.333333 0 0.666667
4 0.111111 0.111111 0.111111 0.666667
5 0.333333 0 0.666667 0
6 0 0.222222 0.111111 0.666667
7 0 0.111111 0.555556 0.333333
8 0.111111 0 0.777778 0.111111
9 0.888889 0.111111 0 0
10 0.333333 0.111111 0.222222 0.333333
11 0.666667 0 0 0.333333
12 0.666667 0 0 0.333333
13 0.777778 0 0.222222 0
14 0.555556 0 0 0.444444
15 0.222222 0 0.111111 0.666667
16 0.777778 0.111111 0 0.111111
17 0.111111 0 0.888889 0
18 0.111111 0 0.888889 0
19 0 0 1 0 |