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[+] Show/hide bicluster #40 rows and columns.
bicluster 40
Methanococcus maripaludis S2
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bicluster 40 genes
Methanococcus maripaludis S2
23
[+] Show/hide bicluster #40 rows (short gene names).
bicluster 40 short names
Methanococcus maripaludis S2
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short_name
[+] Show/hide bicluster #40 rows (long gene names).
bicluster 40 long names
Methanococcus maripaludis S2
23
long_name
[+] Show/hide bicluster #40 rows (NCBI RefSeq gene IDs).
bicluster 40 NCBI RefSeq IDs
Methanococcus maripaludis S2
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[+] Show/hide bicluster #40 gene upstream sequences.
bicluster 40 upstream sequences
Methanococcus maripaludis S2
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upstream
[+] Show/hide bicluster #40 columns (arrays; conditions).
bicluster 40 arrays
Methanococcus maripaludis S2
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[+] Show/hide bicluster #40 ratios.
bicluster 40 ratios
Methanococcus maripaludis S2
23x38
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0098 1.1768142161629 0.791037370467116 1.09587496067784 1.10737069762558 1.2589267359378 1.12062598614695 1.03880683992137 -3.5885791256134 0.709205918349828 -0.436434411292202 -0.635167937862758 0.487091976888618 -0.319532336838934 -0.339016015914478 -0.288358450318062 -0.151972696789249 0.233804148906537 -0.0857281879323969 -0.0389673581510895 -0.568923429005906 -0.549439749930362 -0.697515710904502 0.140282489343922 0 -0.0233804148906537 -0.724792861610264 -2.61081299612299 0 0.070141244671961 0.237700884721646 0.389673581510895 0.545543014115253 0.467608297813074 0.716999389980046 0.549439749930362 0.954700274701692 1.40282489343922 -0.0194836790755448
MMP0230 0.0109839363186898 -0.230662662692486 1.12166444100036 1.43759997065234 1.43710399100787 1.28847707546666 0.8549956771636 -3.96405444187046 0.0988554268682084 -0.779859478626977 -0.648052242802699 -0.274598407967245 0.164759044780347 -0.142791172142968 -0.329518089560695 -0.241646599011176 -0.0109839363186898 0.351485962198074 0.0329518089560695 0.340502025879384 -0.263614471648556 -0.0768875542308287 -0.0988554268682083 0.61510043384663 0.0988554268682084 -0.637068306484009 -0.713955860714838 0.62608437016532 0.406405643791523 0.175742981099037 -0.0329518089560694 0.285582344285935 0.494277134341042 0.823795223901736 1.0764257592316 0.933634587088635 0.922650650769945 0.351485962198074
MMP0318 -0.472658833417312 0.00487277147852899 1.32009712981718 1.28371923994228 1.20685627907756 1.24147394847465 1.36982335344276 -4.49743147140662 -0.00487277147852899 0.00487277147852899 -0.0536004862638188 0.3362212320185 0.0730915721779348 1.22306564111078 0.599350891859065 -0.00487277147852899 0.19003808766263 -0.277747974276152 -0.199783630619688 -0.920953809441978 -0.628587520730239 -0.579859805944949 -0.277747974276152 -0.219274716533804 -0.687060778472587 -0.979427067184326 -0.462913290460254 -0.19003808766263 0.102328201049109 -0.19003808766263 -0.131564829920283 0.316730146104384 0.453167747503196 0.813752836914341 0.755279579171993 1.33026661363841 1.25230226998195 0.112073744006167
MMP0326 -0.188000021412197 -0.216923101629458 0.184934840140012 0.50795396062247 0.836197100366582 1.09696320493824 0.99393374602425 -5.46717413160497 0.27476926206398 -0.46758979684572 -0.457948770106633 0.708615465322896 -0.0433846203258916 -0.573641090975678 -0.419384663150285 -0.332615422498502 -0.207282074890371 -0.486871850323894 -0.564000064236591 -0.833948812931027 -0.679692385105635 -0.486871850323894 0.0626666738040656 0.159076941194936 -0.332615422498502 0.0144615401086305 -1.53774376488438 0.207282074890371 -0.380820556193937 0.660410331627461 0.583282117714765 0.930359080321897 0.82430778619194 0.72789751880107 0.650769304888374 0.940000107060984 0.766461625757418 -0.342256449237589
MMP0393 0.770908982429276 0.645896715008312 1.76019107604626 1.8806148932038 1.93870997426718 1.92389220249479 1.71918739611592 -3.42555947216784 -0.0781326671381024 -0.0520884447587349 -0.0989680450415963 0.255233379317801 0.416707558069879 0.140638800848584 -0.145847645324458 -0.250024534841927 0.00520884447587349 0.0729238226622287 0.0885503560898492 -0.182309556655572 -0.187518401131446 -0.0937592005657228 -0.140638800848584 -0.151056489800331 -0.953218539084848 -1.12511040678867 -0.901130094326113 -0.109385733993343 0.23960684589018 0.395872180166385 0.526093292063222 0.218771467986686 0.0833415116139757 0.34378373540765 0.437542935973373 0.67194093738768 0.562555203394337 0.296904135124789
MMP0408 0.316621718293008 0.158310859146504 1.16784913935312 1.64012324686202 1.65384826642554 1.09808028990525 0.965309791321629 -3.30946186357385 0.37994606195161 -0.0189973030975805 -0.101318949853763 0.0126648687317203 0.37994606195161 -0.0126648687317203 -0.183640596609945 -0.40527579941505 -0.500262314902952 -0.81688403319596 -0.880208376854562 -0.924535417415583 -0.8105515988301 -0.835881336293541 -0.0126648687317203 0.582583961659135 -0.582583961659135 -0.645908305317736 -0.8105515988301 0.626911002220156 0.170975727878224 0.766224558269079 1.03851923600107 0.937200286147304 0.645908305317736 0.633243436586016 0.39261093068333 0.40527579941505 0.639575870951876 0.253297374634406
MMP0541 0.341041921204092 0.0541842304716782 0.641637162999528 0.465861307357877 0.620720609374391 0.854352824532938 0.922763405198031 -4.04424789196179 0.315543459805655 0.130679614666988 0.0414349997724598 0.0031873076748046 -0.0733080765205058 -0.213549614211908 0.0733080765205057 -0.20080038351269 -0.207174998862299 -0.372914997952138 -0.417537305399402 -0.634274227286115 -0.576902689139632 -0.525905766342759 0.404788074700184 -0.015936538374023 -1.21436422410055 -0.647023457985333 -0.0924319225693333 0.0350603844228506 -0.0541842304716782 0.564153458440414 0.978503456165012 1.06774807105954 1.08687191710837 1.25898653154782 1.16336730130368 1.22073883945016 1.1761165320029 0.0223111537236322
MMP0583 0.222871866742584 -0.303916181921706 1.12632541541318 0.720424151237788 1.83596645842776 2.16059597681456 1.14584283157188 -3.93783408759989 0.607832363843411 -0.0202610787947804 -0.0303916181921706 -1.43853659442941 -0.466004812279949 -1.06370663672597 -0.982662321546848 -0.861095848778166 -1.15488149130248 -0.729398836612094 -1.43853659442941 -1.27644796407116 -1.24605634587899 -1.11435933371292 -0.121566472768682 0.354568878908657 -0.0303916181921706 -0.901618006367727 -0.810443151791215 0.415352115292998 0.293785642524315 0.617962903240801 0.577440745651241 0.283655103126925 0.283655103126925 0.344438339511266 0.384960497100827 0.263394024332145 0.445743733485168 0.303916181921706
MMP0708 0.591578357242777 0.549819884966816 0.87981949016767 1.21817686568143 1.12368821660678 0.893751856455275 0.974308146202067 -4.39111801924401 0.327108032828359 -0.341027523587013 -0.341027523587013 -0.0208792361379804 -0.466302940414895 -0.0765571991725948 -0.361906759724993 -0.556779630346143 -0.424544468138934 -0.793410973243254 -0.807330464001908 -1.25971391365815 -1.00220333462306 -1.04396180689902 -0.459343195035568 0.187913125241823 -1.62162067338314 -0.668135556415372 -1.53114398345189 0.292309305931725 0.424544468138934 0.146154652965863 0.501101667311529 0.772531737105274 0.570699121104797 0.946525371588443 0.75861224634662 1.21099569600286 1.46850627503795 0.508061412690856
MMP0872 0.599324774104255 1.06788777931304 2.66604329908638 2.45495806253892 2.34572514010749 1.38755889636899 1.0249252809527 -2.27846851077539 -0.0435872562984913 -0.0108968140746228 -0.0217936281492457 0.326904422238685 0 -0.108968140746228 -0.740983357074352 -0.751880171148975 -0.381388492611799 -0.468563005208781 -0.697396100775861 -1.1441654778354 -0.523047075581895 -0.653808844477369 -0.108968140746228 0.228833095567079 -0.272420351865571 -0.250626723716325 -0.566634331880387 0.316007608164062 0.108968140746228 0.130761768895474 0.305110794089439 0.0544840703731141 0 0.566634331880387 0.610221588178878 1.12237184968615 1.3838953874771 0.316007608164062
MMP0887 0.204701601911889 -0.0102350800955944 1.42997695921094 1.17717548580392 1.26236696004292 1.47603889320299 0.333733629299314 -3.60694992943534 1.08491849013301 -0.624339885831262 -0.75739592707399 -0.75739592707399 -0.317287482963428 -0.266112082485456 -1.1156237304198 -1.04397816975064 -0.562929405257696 -0.695985446500424 -0.890451968316718 -1.14632897070658 -0.501518924684129 -0.470813684397345 -0.767631007169585 0.368462883441401 0.153526201433917 -0.194466521816295 0.0102350800955945 0.419638283919373 0.0716455606691613 0.48104876449294 0.675515286309235 0.153526201433917 0.173996361625106 0.358227803345806 0.890451968316718 0.839276567838746 0.829041487743152 -0.0102350800955944
MMP0947 -0.0891815726818691 -0.256397021460374 0.277606394881811 0.74439692616877 1.2222615680958 1.43334082847783 1.37864143349807 -4.01730278704809 0.256397021460374 -0.49049864975028 -0.356726290727476 0.0557384829261682 -0.824929547307289 -1.04788347901196 -0.746895671210654 -0.914111119989158 -0.345578594142243 -0.902963423403924 -0.691157188284485 -1.18165583803477 -0.869520333648224 -0.746895671210654 -0.523941739505981 0.568532525846915 0.289840111216075 -0.958701906330093 -1.18165583803477 0.546237132676448 0.0111476965852336 0.568532525846915 0.356726290727476 1.44920055608037 1.11476965852336 1.14821274827906 0.902963423403924 0.969849602915326 0.702304884869719 0.111476965852336
MMP1032 0.993876455047299 0.775442069322618 1.2594125900427 1.59114809435727 1.41985552969137 1.06033841526326 0.958417695404472 -3.23890763187186 0.0873737542898724 -0.0764520350036385 -0.163825789293511 0.709911753605214 0 -0.141982350721043 -0.840972385040022 -0.742676911463916 -0.40410361359066 -0.982954735761065 -0.655303157174044 -1.10309364790964 -0.415025332876894 -0.469633929308064 0 -0.196590947152213 -1.33244975292056 2.40277824297149 -0.557007683597937 -0.131060631434809 -0.436868771449362 0.40410361359066 0.218434385724681 0.218434385724681 0.207512666438447 0.720833472891448 0.469633929308064 1.00479817433353 1.04848505147847 -0.305808140014554
MMP1075 0.88874043131287 0.456380221484987 1.89238683959553 1.49948629057274 1.43712112263142 0.997582268099688 0.723537072368353 -4.36121249441645 -0.198165096171113 -0.00600500291427615 -0.0720600349713138 -0.0540450262284853 -0.648540314741824 -0.0660550320570376 -0.612510297256167 -0.726605352627414 -0.432360209827883 -0.462385224399263 -0.534445259370577 -0.822685399255833 -0.492410238970644 -0.396330192342226 -0.324270157370912 0.318265154456636 -0.804670390513004 0.750625364284519 -0.0180150087428285 0.34228516611374 0.588490285599063 0.0600500291427615 0.0840700407998661 0.126105061199799 0.288240139885255 0.516430250627749 0.504420244799197 0.636530308913272 1.26705561491227 0.492410238970644
MMP1076 0.854649200871377 0.362139491894651 1.70693447681853 1.70457975892876 1.36768026553818 0.927347487080535 0.835775012034696 -4.22774672327022 -0.0260740434164149 0.0492509708976725 -0.055045202767987 -0.00289711593515721 0.0898105939898735 -0.0898105939898735 -0.524377984263455 -0.512789520522826 -0.437464506208738 -0.51858375239314 -0.553349143615027 -0.564937607355656 -0.524377984263455 -0.420081810597795 -0.188312535785219 0.431670274338424 -0.860443432741691 0.309991405061821 -0.304197173191507 0.443258738079053 0.512789520522826 0.00289711593515721 0.0492509708976725 0.0202798115461005 0.182518303914904 0.356345260024337 0.379522187505594 0.617085694188485 1.15594925812773 0.408493346857166
MMP1077 1.07437158168793 0.658485808131312 1.96338442789714 1.87409669817209 1.62709918562306 1.22239189025005 0.964005195611196 -3.92256367300448 -0.011552382598795 0.0346571477963849 -0.0577619129939748 0.0519857216945773 0.121300017287347 -0.0924190607903596 -0.300361947568669 -0.369676243161438 -0.242600034574694 -0.456319112652401 -0.433214347454811 -0.52563340824517 -0.438990538754208 -0.265704799772284 -0.103971443389155 0.658485808131312 -0.519857216945773 -0.173285738981924 -0.52563340824517 0.704695338526492 0.612276277736132 0.0173285738981924 -0.0288809564969874 -0.0693142955927697 -0.0462095303951798 0.207942886778309 0.283033373670476 0.687366764628299 1.30541923366383 0.646933425532517
MMP1116 0.144026153795865 0.216039230693798 2.21975507294407 2.16617920578442 2.16834701543828 1.97711524040241 1.84410463892732 -2.55035515481171 0.246901977935769 0.0720130768979326 0.0205751648279808 0.318915054833702 -0.051437912069952 0.102875824139904 -0.504091538285529 -0.637830109667404 -0.26747714276375 -0.586392197597452 -0.421790878973606 -0.977320329329087 -0.216039230693798 -0.216039230693798 -0.185176483451827 -0.195464065865817 -0.52466670311351 -1.09048373588298 -1.20364714243688 -0.154313736209856 -0.277764725177741 0.0720130768979326 -0.0205751648279808 0.411503296559615 0.493803955871539 1.01847065898505 1.00818307657106 1.52256219727058 1.3888236258887 -0.318915054833702
MMP1129 0.557075725659091 0.663575496740975 0.726890356147554 1.13589719719173 1.57314116634872 1.5209826249235 1.6658674694978 -5.3292962322581 0.319499313245655 -0.180230381830882 -0.401422214077874 -0.00819229008322192 -0.237576412413436 0 0.106499771081885 0 0.229384122330214 0.147461221497995 0.0901151909154411 -0.393229923994652 -0.114692061165107 0.0737306107489973 0 0.163845801664438 0.458768244660427 -1.26161267281618 -1.54015053564572 0.188422671914104 -0.0573460305825534 -0.098307480998663 0.180230381830882 0.622614046324866 0.565268015742312 0.819229008322192 0.63899862649131 0.860190458738301 1.22884351248329 -0.122884351248329
MMP1205 0.756500802807244 0.993834388001674 1.36842746896855 1.58395179857431 1.41918284827518 1.00599533124034 0.844947455112281 -4.23103742413608 0.390611525632499 -0.133500141671867 -0.222500236119778 0.202722437353575 0.410389324398701 -0.0939445441394617 -0.519167217612815 -0.529056116995916 -0.410389324398701 -0.449944921931106 -0.697167406508637 -0.865278696021358 -0.667500708359333 -0.538945016379017 0.627945110826928 -0.0346111478408543 -1.05316778430028 1.25094577196231 0.113722342905664 -0.00494444969155062 0.232389135502879 -0.16316683982117 -0.331278129333891 0.410389324398701 0.529056116995916 0.924612092319965 0.983945488618573 1.29050136949471 1.53772385407224 0.24227803488598
MMP1260 0.596857696123109 0.489121649891501 0.567518761756248 0.924657540798883 0.966559403139137 0.940808566078718 0.884117811147786 -2.16829660160623 0.342600627016514 0.140056860101091 -0.131437976402562 -0.329672301468721 -0.566691603178259 -0.0237019301709538 0.0237019301709538 -0.265030673729756 -0.325362859619457 -0.639952114615752 -0.652880440163545 -0.937303602214991 -0.609786021670902 -0.359838394413571 -0.58823881242458 0.316743975920928 0.148675743799619 -1.49753104261935 -1.92847522754579 0.329672301468721 -0.10989076715624 0.265030673729756 0.695974858656188 1.20879843871864 1.06658685769292 1.06658685769292 0.652880440163545 0.726140951601039 0.920065834817933 -0.092652999759183
MMP1266 0.428557177521608 0.329659367324314 0.537193949578081 0.595992084990371 1.0764249468017 1.18608222887863 1.34027227184117 -3.43999126190635 0.222520072943912 -0.395591240789177 -0.494489050986471 0.148346715295941 0.0824148418310785 -0.206037104577696 -0.214278588760804 -0.30493491477499 -0.0329659367324314 -0.148346715295941 -0.0824148418310785 -0.337900851507422 -0.239003041310128 -0.255486009676343 0.173071167845265 0.0164829683662157 -0.107139294380402 -0.164829683662157 -0.4203156933385 0.0412074209155392 0.0247244525493235 0.478006082620255 0.34614233569053 0.4203156933385 0.412074209155392 0.675801703014844 0.758216544845922 0.914804744324971 0.865355839226324 0.0741733576479706
MMP1701 0.0727969682755511 0.15599350344761 0.0917591849693681 0.801305504589805 0.998375612548781 1.16069626449406 1.18621050992012 -3.97611851337179 0.852764485513599 0.11439523586158 0.0415982675860292 1.02955712275422 0.488779644135843 -0.124794802758088 -0.478380077239336 -0.623974013790438 -0.280788306205697 -0.343185707584741 -0.644773147583453 -1.22714889378786 -0.69677098206599 -0.592775313100917 0.644773147583453 -0.332786140688234 -1.48713806620055 -1.44553979861452 -1.50793719999356 -0.280788306205697 0.0207991337930146 -0.11439523586158 -0.124794802758088 0.11439523586158 -0.0727969682755512 0.478380077239336 0.81116621792757 1.22714889378786 0.935961020685658 0.135194369654595
MMP1702 0.57095252568029 0.740822698609963 0.38240740160987 0.686524660430639 1.15569762230268 1.09845368614718 1.22089604073426 -4.20605584573922 0.674762075803979 0.136839861526681 -0.033030311402992 0.740822698609963 0.297272802626928 0.184026020673812 -0.552078062021437 -0.759697162268815 -0.486017439215453 -0.684199307633405 -0.703073771292258 -1.25987044922841 -0.806883321415947 -0.608701452997995 0.31614726628578 -0.344458961774059 -1.78835543167628 -0.608701452997995 -0.854069480563078 -0.231212179820944 -0.0141558477441394 -0.155714325185534 -0.0424675432324183 0.401082352750617 0.589826989339142 0.929567335198488 1.0050651898339 1.32593107203439 1.01450242166332 -0.117965397867828
[+] Show/hide bicluster #40 motif PSSM #1. bicluster 40 motif PSSM #1 Methanococcus maripaludis S2 10x4
POSITION A C G T
1 0.888889 0 0 0.111111
2 0.5 0 0 0.5
3 0.277778 0 0 0.722222
4 0.166667 0 0 0.833333
5 0 1 0 0
6 1 0 0 0
7 0 0.833333 0.111111 0.055556
8 0.055556 0.944444 0 0
9 0.444444 0 0.333333 0.222222
10 0.388889 0.222222 0.388889 0 [+] Show/hide bicluster #40 motif PSSM #2. bicluster 40 motif PSSM #2 Methanococcus maripaludis S2 9x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 0 0.5 0.5 0
4 0 0.5 0 0.5
5 0.5 0 0 0.5
6 0 0 1 0
7 1 0 0 0
8 0 0 1 0
9 0 0 1 0 |