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[+] Show/hide bicluster #37 rows and columns.
bicluster 37
Methanococcus maripaludis S2
18x41
[+] Show/hide bicluster #37 rows (genes).
bicluster 37 genes
Methanococcus maripaludis S2
18
[+] Show/hide bicluster #37 rows (short gene names).
bicluster 37 short names
Methanococcus maripaludis S2
18
short_name
[+] Show/hide bicluster #37 rows (long gene names).
bicluster 37 long names
Methanococcus maripaludis S2
18
long_name
[+] Show/hide bicluster #37 rows (NCBI RefSeq gene IDs).
bicluster 37 NCBI RefSeq IDs
Methanococcus maripaludis S2
10
[+] Show/hide bicluster #37 gene upstream sequences.
bicluster 37 upstream sequences
Methanococcus maripaludis S2
18
upstream
[+] Show/hide bicluster #37 columns (arrays; conditions).
bicluster 37 arrays
Methanococcus maripaludis S2
41
[+] Show/hide bicluster #37 ratios.
bicluster 37 ratios
Methanococcus maripaludis S2
18x41
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
Antisense_11 0.207943637345411 -0.124766182407247 0.0282453793535382 0.297883128248956 2.5596790743516 3.87250035949889 -0.218340819212682 0.0103971818672706 -0.0935746368054351 0.280723910416305 0.0935746368054351 0.530256275230799 -0.904554822452539 -1.01892382299251 -0.686214003239857 -0.135163364274517 0.415887274690822 -0.114369000539976 1.00852664112524 2.0482448278523 0.790185821912563 0.436681638425364 0.571845002699881 1.25805900593974 2.29777719266679 2.29777719266679 2.08983355532138 2.36016028387042 0.998129459257974 -0.207943637345411 -0.457476002159905 -0.946143549921621 -0.873363276850727 -0.519859093363528 -0.634228093903504 -0.280723910416305 -0.18714927361087 -0.36390136535447 -0.280723910416305 -0.259929546681764 -0.103971818672706
Antisense_14 0.129981235506596 0.157228409445858 0.705493609370818 0.00625463418971415 2.46418556596638 4.38200051883571 -0.687433982671267 -0.551198112974956 -0.632939634792743 -0.206067243077636 0.193557974698208 0.73850145348345 -0.614774852166568 -0.832752243680665 -0.442209417217908 -0.133408112572937 0.629512757726401 0.456947322777741 0.629512757726401 1.61949341085292 0.547771235908615 0.466029714090829 0.502359279343178 1.11996188863312 1.80114123711467 1.95554188943716 1.38335123671265 2.39149667246535 0.56593601853479 -0.106160938633675 -0.324138330147772 -0.651104417418917 -0.968988113376975 -0.64202202610583 -0.60569246085348 -0.29689115620851 -0.678351591358179 -0.578445286914218 -0.623857243479655 -0.723763547923616 0.075486887628072
Antisense_15 0.219801565136139 -0.0560278499366628 0.432719126265267 -0.167453253737539 1.96013577813858 2.95614168556795 -0.0991261960417881 -0.124985203704863 -0.124985203704863 0.0560278499366628 0.245660572799214 0.452532634103815 -0.797319402944817 -1.15072584100684 -0.857657087491992 0.142224542146913 0.581827672419191 0.176703219031013 0.926614441260193 1.40069624841657 0.849037418270967 0.202562226694089 0.219801565136139 1.08176848723864 2.2023254859719 1.93511574012012 1.9609747477832 1.83167970946782 0.849037418270967 -0.44391296488279 -0.823178410607892 -1.08176848723864 -0.909375102818143 -0.46115230332484 -0.805939072165842 -0.599067010861241 -0.35771627267254 -0.650785026187391 -0.297378588125364 -0.228421234357164 -0.271519580462289
Antisense_17 0.0471113644968001 -0.189373379076268 -0.383118133592771 -0.346676149921153 2.0118832690897 3.92093498749844 0.0921560775583368 -0.0992839529531944 -0.0429780616262735 0.283596108069868 0.891699734400614 0.463774960316015 -1.10152881857239 -0.763693470610862 -0.43711930091472 0.339901999396789 -0.290723983464726 0.565125564704473 1.08313976491215 1.78133281736597 0.88043855613523 0.148461968885258 0.306118464600637 1.06061740838138 2.4682646915544 2.29934701757364 1.9727728478775 2.2543023045121 1.15070683450445 0.0471113644968001 -0.347029874791647 -0.808738183672399 -1.03396174898008 -0.617298153160867 -0.92134996632624 -0.718648757549325 -0.335768696526262 -0.51594754877241 -0.459641657445489 -0.245679270403189 0.227290216742947
Antisense_19 -0.0339350845100679 -0.276328545296267 0.335539973893152 0.819753654322267 3.06861823742378 4.18312692614635 -0.218154114707579 -0.179371160981787 -0.218154114707579 -0.00484786921572398 0.208458376276131 0.732028251574321 -0.586592175102602 -0.790202682163009 -0.509026267651018 0.305415760590611 0.470243313925226 0.00484786921572398 1.06168335824355 1.78886374060215 0.87746432804604 0.247241330001923 0.412068883336538 1.11016205040079 2.19608475472296 1.99247424766256 2.17669327786007 2.23486770844875 0.945334497066176 -0.305415760590611 -0.460547575493778 -0.964725973929072 -0.945334497066176 -0.509026267651018 -0.693245297848529 -0.441156098630882 -0.392677406473642 -0.528417744513914 -0.353894452747851 -0.382981668042194 -0.130892468824547
Antisense_20 -0.0535208516733374 -0.235381539785689 0.0534898069841079 -0.643710518614842 3.51598306336239 3.40536490911867 -0.25677691485773 -0.171195414569565 -0.128404664425482 0.23531671179922 0.427875087447592 0.363688962231468 -1.0163127299152 -0.727475166442639 -0.588405228474371 0.2246190242632 0.652526525704026 -0.0214277890652755 0.834387213816378 2.06462128045875 0.620433463095964 0.160432899047076 0.246014399335241 0.86648027642444 2.27857503117917 2.24648196857111 1.78648140452222 2.10741203060284 0.845084901352398 -0.192590789641606 -0.620498291082433 -1.0163127299152 -1.15538266788347 -0.449335290506102 -0.759568229050701 -0.363753790217937 -0.385149165289978 -0.631195978618453 -0.57770754093835 -0.545614478330288 -0.299567665001813
Antisense_21 -0.126924646538433 -0.341720202218857 0.309645543436979 -0.695081210524078 2.99508896928157 3.08032248190283 -0.234322424378645 -0.0683440404437714 -0.497935151804621 0.205032121331314 0.497935151804621 0.566279192248392 -0.839655354023478 -1.13255838449678 -0.93728969751458 0.214795555680425 0.663913535739494 1.38640767757365 0.673676970088604 1.68907414239607 0.781074747928817 0.234322424378645 0.351483636567967 1.02516060665657 2.58731010251421 1.92339656677471 2.09913838505869 2.56778323381598 0.732257576183265 -0.244085858727755 -0.517462020502841 -0.888472525769029 -0.986106869260131 -0.683440404437715 -0.790838182277927 -0.4784082831064 -0.156214949585763 -0.214795555680425 -0.292903030473306 -0.390537373964408 -0.0390537373964408
Antisense_25 0.212998913884707 -0.0155852863818078 1.09677178387428 -0.398453462807871 1.60550180816932 3.32874069856393 -0.441583114151221 -0.0883166228302442 -0.451973305072427 0.0155852863818078 0.576655596126889 0.35846158678158 -0.763679032708583 -1.24162781508402 -0.961092660211482 0.0987068137514495 0.846800560078225 -0.368851777702785 0.909141705605456 2.20791557075611 0.815629987314609 0.0779264319090392 0.0987068137514495 0.888361323763046 2.23908614351972 2.35337824365298 2.25986652536213 2.02089213417441 0.950702469290277 -0.503924259678453 -1.0026534238963 -1.12733571495077 -0.753288841787378 -0.316900823096759 -0.61821635981171 -0.35846158678158 -0.337681204939169 -0.742898650866173 -0.35846158678158 -0.244169486648322 -0.306510632175554
Antisense_26 0.205367038918651 0.105187995543699 0.449177565338545 0.163440967225139 1.94616593358704 3.38857031749238 -0.155277517231175 -0.0550984738562235 -0.285510273618613 0.0751342825312138 0.185331230243661 0.455814647356031 -1.06690681194324 -1.51771250713052 -1.07692471628073 0.0250447608437379 0.0751342825312138 -0.025044760843738 0.676208542780925 1.45760508110555 0.716280160130905 0.175313325906166 0.175313325906166 0.896602438205819 2.48944922786755 1.99857191533029 2.45939551485507 2.25903742810516 0.786405490493372 -0.906620342543314 -1.17710375965568 -1.30733651604312 -1.02683519459326 -0.566011595068478 -0.966727768568285 -0.68622644711842 -0.475850456031021 -0.816459203505857 -0.505904169043507 -0.375671412656069 -0.66619063844343
Antisense_28 -0.564656589718626 -0.412816162231264 0.404301178818414 -0.143772585663382 2.0240969655769 3.19680627205042 -0.175565494282262 -0.716497017205987 0.0142350400769401 0.251485708025943 0.669046883616187 0.782927204231708 -1.19099835310399 -1.08660805920643 -0.678536910334147 0.517206456128825 0.251485708025943 0.621596750026386 0.763947150795788 -0.0521951469487805 1.56110939510444 0.308425868333703 0.393836108795344 1.02017787218071 2.67144252110577 0.593126669872506 2.75685276156741 2.67144252110577 0.555166563000665 -0.099645280538581 -0.488736375974945 -0.887317498129269 -0.98221776530887 -0.782927204231708 -0.887317498129269 -0.564656589718626 -0.422306188949224 -0.498226402692905 -0.498226402692905 -0.488736375974945 -0.0142350400769401
Antisense_7 0.0257511718351932 -0.272962421453048 0.0321428701964065 -0.540100556165568 2.9839018844135 3.3186278528842 -0.283262890187125 -0.221460077782661 -0.231760546516739 -0.0257511718351932 0.365666640059743 1.24120648245631 -0.64377929587983 -1.34421116979708 -0.777685389422835 0.324464765123434 0.75708445195468 0.0257511718351932 0.695281639550216 1.45751632587193 0.942492889168071 0.108154921707811 0.231760546516739 0.942492889168071 2.31245523080035 1.7459294504261 2.6523706990249 2.45666179307743 0.695281639550216 -0.30386382765528 -0.612877889677598 -0.890990545497685 -0.911591482965839 -0.53047413980498 -0.715882577018371 -0.334765233857512 -0.272962421453048 -0.468671327400516 -0.489272264868671 -0.468671327400516 -0.0978544529737342
MMP0129 0.331660254228918 0.0627465345838494 -0.774212315607222 -0.304695961827434 2.77414405019513 2.49000570860203 -0.322696463574082 -0.28684130095474 -0.0179275813096713 0.0179275813096713 0.403370579467603 1.27285827298666 -0.851560112209384 -0.851560112209384 -0.501972276670795 0.28684130095474 0.197203394406384 0.618501555183658 0.681248089767507 0.663320508457836 1.60451852721558 0.806741158935206 0.690211880422343 1.308713435606 2.35747694222177 1.5596995739414 3.28074737966984 2.43815105811529 0.591610183219151 -0.349587835538589 -0.833632530899713 -1.02187213465126 -0.86052390286422 -0.403370579467603 -0.770885996315864 -0.618501555183658 -0.457153323396617 -0.340624044883754 -0.0537827439290138 -0.224094766370891 -0.277877510299904
MMP0672 -0.0946117148835572 0.0509447695526846 -1.51987089862568 -1.36848362520201 3.20008210447624 2.30446532669072 0.283835144650671 0.211056902432551 0.443947277530537 0.822394137064766 1.12806275438087 0.473058574417786 -0.822394137064766 -0.604059410410403 -0.443947277530537 0.0655004179963088 -0.13827866021443 0.31294644153792 0.443947277530537 1.31728618414799 0.778727191733893 0.560392465079531 0.429391629086913 1.05528451216275 2.07417990321645 1.88495647344933 1.87040082500571 1.40462007480973 0.589503761966779 -0.109167363327181 -0.327502089981544 -0.400280332199665 -0.618615058854028 -0.502169871305034 -0.356613386868792 -0.298390793094296 -0.633170707297652 -0.371169035312416 -0.385724683756041 -0.371169035312416 -0.13827866021443
MMP0821 0.36388162277943 0.08663848161415 -0.218177333221238 -0.391875336366587 2.65366448155494 4.02116680673537 -0.444744205619303 -0.202156457099683 -0.375433420327983 0.132845671808363 0.15594926690547 0.652676561493263 -1.21871464137238 -0.976126892852756 -0.860608917367223 0.00577589877427667 0.456296003167856 -0.12129387425981 0.721987346784583 1.99268507712545 0.652676561493263 0.46784780071641 0.594917573750496 1.29957722421225 2.14285844525664 2.18906563545085 1.77320092370293 2.07354765996532 0.814401727173009 0.0981902791627032 -0.213708254648236 -0.583365776201943 -0.883712512464329 -0.525606788459176 -0.479399598264963 -0.0866384816141499 -0.386985217876536 -0.490951395813516 -0.698883751687476 -0.548710383556283 -0.00577589877427663
MMP1478 0.203354726757081 0.101677363378541 -0.0540771260483496 -0.286850479551571 1.09142488961679 3.27958625364231 -0.213522463094936 -0.0101677363378541 0.111845099716395 0.355870771824893 0.396541717176309 0.701573807311931 -0.569393234919828 -0.782915698014764 -0.640567389284806 0.305032090135622 0.569393234919828 -0.111845099716395 1.20996062420463 1.77935385912446 1.27096704223176 0.915096270406866 0.82358664336618 0.589728707595536 2.37925030305785 2.65377918417991 2.39958577573356 1.89119895884086 1.22012836054249 -0.49821908055485 -0.742244752663347 -1.20996062420463 -0.965934952096137 -0.701573807311931 -0.793083434352618 -0.416877189852017 -0.183019254081373 -0.264361144784206 0.0101677363378541 0.0203354726757082 -0.244025672108498
MMP1528 -0.425658647198638 -0.814832267494536 0.804944375221895 -0.303432201733274 4.07369426831995 4.0486162121083 -0.352688593393158 -0.158101783245209 0.0243233512684936 0.145940107610962 0.53511372790686 0.729700538054809 -0.255395188319183 -0.790508916226043 -0.474305349735626 0.0608083781712341 0.425658647198638 0.510790376638366 0.608083781712341 1.26481426596167 0.790508916226043 0.620245457346588 0.194586810147949 0.705377186786315 2.01883815528497 2.03099983091922 1.87289804767401 1.47156275174386 0.547275403541107 0.194586810147949 -0.559437079175353 -0.717538862420562 -0.912125672568511 -0.863478970031524 -0.741862213689056 -0.510790376638366 -0.449981998467132 -0.291880215221923 -0.0729700538054809 -0.170263458879455 0.0851317294397278
Unanno_30 0.0125341470162282 -0.33842196943816 -0.588396889222169 -0.70523889580006 2.78442567239954 4.89600853962108 -0.146231715189329 -0.0208902450270469 0.0125341470162282 0.129519519167691 0.00417804900540939 0.622529301805999 -0.254860989329972 -0.714446379925005 -0.488831733632898 0.0208902450270469 -0.00417804900540938 0.363490263470617 0.630885399816817 1.32444153471478 1.09047079041185 0.781295164011555 0.40527075352471 1.07375859439021 2.05142206165601 1.8258074153639 1.959504983537 1.76731472928817 0.672665889870911 -0.0877390291135971 -0.296641479384066 -0.355134165459798 -0.513900027665354 -0.513900027665354 -0.447051243578804 -0.421982949546348 -0.313353675405704 -0.321709773416523 -0.196368303254241 -0.33842196943816 -0.00417804900540938
Unanno_46 -0.0103327932430477 -0.123993518916572 0.110621096886838 -0.349107957956459 2.17800209117942 3.38191364995017 -0.13432631215962 0.0103327932430477 -0.351314970263622 0.0929951391874292 0.53730524863848 0.609634801339814 -0.919618598631245 -1.18827122295048 -0.661298767555052 0.196323071617906 0.433977316208003 0.247987037833145 0.929951391874292 1.49825502024192 0.867954632416006 0.196323071617906 0.40297893647886 1.09527608376306 2.56253272427583 1.96323071617906 2.55219993103278 2.54186713778973 0.847289045929911 -0.640633181068957 -0.723295527013338 -1.41559267429753 -1.04361211754782 -0.609634801339814 -0.898953012145149 -0.568303628367623 -0.371980556749717 -0.578636421610671 -0.413311729721908 -0.351314970263622 -0.154991898645715
[+] Show/hide bicluster #37 motif PSSM #1. bicluster 37 motif PSSM #1 Methanococcus maripaludis S2 23x4
POSITION A C G T
1 0.857143 0.142857 0 0
2 0.857143 0 0.142857 0
3 0.285714 0.142857 0.428571 0.142857
4 0.857143 0 0 0.142857
5 0.571429 0 0.428571 0
6 1 0 0 0
7 0.571429 0.142857 0 0.285714
8 0 0 1 0
9 0 0.142857 0.285714 0.571429
10 0 0.428571 0.571429 0
11 0 0.142857 0.857143 0
12 0.571429 0.142857 0.142857 0.142857
13 0.857143 0 0 0.142857
14 0.571429 0.142857 0 0.285714
15 0 0.142857 0 0.857143
16 0.142857 0 0.428571 0.428571
17 0.571429 0 0.428571 0
18 0.285714 0 0.428571 0.285714
19 0 0 0 1
20 0 0.142857 0.857143 0
21 0 0.285714 0.571429 0.142857
22 0.571429 0 0.428571 0
23 0 0.142857 0.857143 0 [+] Show/hide bicluster #37 motif PSSM #2. bicluster 37 motif PSSM #2 Methanococcus maripaludis S2 10x4
POSITION A C G T
1 0.25 0 0.75 0
2 0 0.75 0.25 0
3 0 0.5 0.5 0
4 1 0 0 0
5 0 0 1 0
6 0 0.5 0.5 0
7 0 0 0 1
8 0 0 0 1
9 0 0.25 0.75 0
10 0 0.75 0.25 0 |