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[+] Show/hide bicluster #34 rows and columns.
bicluster 34
Methanococcus maripaludis S2
19x39
[+] Show/hide bicluster #34 rows (genes).
bicluster 34 genes
Methanococcus maripaludis S2
19
[+] Show/hide bicluster #34 rows (short gene names).
bicluster 34 short names
Methanococcus maripaludis S2
19
short_name
[+] Show/hide bicluster #34 rows (long gene names).
bicluster 34 long names
Methanococcus maripaludis S2
19
long_name
[+] Show/hide bicluster #34 rows (NCBI RefSeq gene IDs).
bicluster 34 NCBI RefSeq IDs
Methanococcus maripaludis S2
0
[+] Show/hide bicluster #34 gene upstream sequences.
bicluster 34 upstream sequences
Methanococcus maripaludis S2
19
upstream
[+] Show/hide bicluster #34 columns (arrays; conditions).
bicluster 34 arrays
Methanococcus maripaludis S2
39
[+] Show/hide bicluster #34 ratios.
bicluster 34 ratios
Methanococcus maripaludis S2
19x39
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0120m
RNA_10 -0.0177637651983275 0.467779150222624 -0.487392437204616 -1.11696274107506 -0.944330000330143 -1.05172414689696 -1.03372114523019 -1.37221322015234 -1.09521654104194 -0.859840665775233 0.473700405288734 -0.894109514982485 0.325669028636004 -0.562519231280371 0.538834211015934 0.266456477974913 -0.384881579297096 0.988849596040231 -0.663180567404227 -1.23754230881682 -0.657259312338118 -1.41517996080009 0.118425101322183 2.09612429340265 1.72308522423777 1.19609352335405 -0.106582591189965 -0.609889271809245 -0.50330668061928 0.0177637651983274 2.78891113613742 1.54544757225449 1.7408489894361 1.7408489894361 0.811211944056956 1.19609352335405 -0.0236850202644367 -0.698708097800882 -0.515149190751498
RNA_11 -0.646133609107791 0.352125723482024 -0.62330481299957 -0.794757890914892 -0.822235669621089 -0.739287778678299 -0.849095963393544 -0.891496126009461 -1.15371849092538 -0.671673930546855 0.468361399194536 -1.37089723413875 -0.0170934817224283 -0.817068426332074 0.0239308744113995 -0.071792623234199 -0.48887357726145 1.15893806078064 -0.379475294237909 -0.646133609107791 -0.304263974659224 -0.611946645662934 0.263239618525396 2.03412432496897 1.52131987329612 1.39824680489464 0.0170934817224282 -0.659808394485734 -0.235890047769511 0.160678728190826 2.67000184504331 1.81532775892189 1.78114079547703 1.56918162211892 0.741857106753389 1.09056413389093 -0.0376056597893424 -0.89911713859973 -0.769206677509275
RNA_12 -0.0506492007749702 0.177272202712395 -1.11856195795732 -1.45285086796234 -1.30876738976956 -1.34440708609502 -1.4647625343383 -1.29876159583841 -1.44637092317589 -1.2560701948924 0.886361013561978 -0.943341364433819 0.39886245610289 -0.943341364433819 0.69642651065584 -0.0633115009687128 0.0569803508718415 0.905354463852591 -0.709088810849582 -1.39285302131168 -0.835711812787008 -1.65876132538027 0.265908304068593 1.53213832344285 1.44983337218352 0.595128109105899 0.0126623001937426 -0.462173957071603 -0.531816608137187 0.34821325532792 2.92499134475453 1.1016201168556 1.34220382053671 1.35486612073045 0.645777309880869 0.886361013561978 -0.367206705618534 -1.24723656908364 -0.728082261140196
RNA_15 0.462585563692965 0.328679216308159 -1.41555897819471 -1.3776310948087 -1.07274221580231 -1.19412976832985 -1.01804911164407 -1.23471443277446 -1.35527746305462 -1.79914362543484 0.748658214924141 -0.955604388155205 0.0791264780001124 -0.651271780462464 0.559971998154642 0.0486932172308383 -0.383459085692853 0.92517112738593 -0.45649891153911 -1.17472386569398 -0.736484910616432 -1.18081051784783 0.206946173231063 1.66774269015622 1.44862321261744 0.992124301078333 -0.213032825384918 -0.699964997693303 -0.566058650308497 0.0121733043077095 2.77551338215779 1.5216630384637 1.62513612507923 1.49731642984828 0.237379434000337 0.77300482353956 -0.432152302923691 -1.11994399630928 -1.07125077907845
RNA_18 -0.193751506293956 0.101801638900214 -0.919738801016117 -0.925373593975569 -1.14611894762941 -1.09016647471102 -1.14117614966842 -0.911632612360096 -1.01740848872526 -0.8736719240197 0.37765124108144 -1.29714991501886 0.108369486571196 -0.909646902430946 0.640365147920702 0.101801638900214 -0.811129187366223 1.26431067666395 -0.620661604907758 -0.804561339695241 -0.489304651488126 -1.21833574296708 0.581254518881868 1.90139190074916 1.91452759609112 0.903079054759965 -0.33824415505555 -0.666636538604629 -0.101801638900214 0.25286213533279 2.97195107111916 1.76346709965855 1.82914557636836 1.75689925198757 0.863671968734075 1.02130031283763 -0.430194022449292 -1.02786816050861 -0.863671968734075
RNA_25 0.152864834665461 0.392652810611283 -1.04208891765611 -1.11743031168769 -1.32549888839272 -1.20423081940245 -1.34192060606849 -1.23148004323806 -1.2113589306217 -1.02025344690042 0.404642209408574 -1.20193722942843 0.176843632260044 -0.764324173327307 0.308727019030245 0.260769423841081 -0.614456688361168 1.01010684867177 -1.1060220390501 -1.20793192882708 -0.902202259496154 -1.28586302100947 0.326711117226182 1.60358208913768 1.45970930357019 0.812281768516471 -0.590477890766586 -1.02809094686771 -0.848249964908344 -0.236790626246499 2.60469688871149 1.32782591679999 1.4477199047729 1.3817782113878 0.00899204909796832 1.02209624746906 -0.404642209408574 -1.43573050597561 -1.35779941379322
RNA_29 -0.0122132013428967 0.354182838944003 -0.838813336461515 -0.759767732562694 -0.604250090552027 -0.58228276710382 -0.594323432551346 -0.769970128010093 -1.09902045192606 -0.618864333999729 0.268690429543726 -1.33123894637574 0.250370627529381 -1.12972112421794 0.763325083931041 0.0244264026857932 -0.457995050358624 1.01980231213187 -0.647299671173523 -1.30070594301849 -0.769431684602489 -1.48390396316194 0.225944224843588 1.8075537987487 1.84419340277739 0.903776899374352 -0.207624422829243 -0.738898681245247 -0.567913862444694 0.00610660067144833 2.91284852028085 1.38619835241877 1.54496996987643 1.69763498666263 0.763325083931041 1.30681254368994 -0.00610660067144833 -0.854924094002766 -0.653406271844971
RNA_30 -0.115117060537268 0.560236361281372 -0.718532518891679 -0.446847606895245 -0.739209223673257 -0.940316126786296 -0.952213889414241 -1.08066356231987 -0.883946126446414 -0.738400633765572 0.42209588863665 -1.15117060537268 -0.230234121074537 -0.621632126901248 0.437444830041619 -0.199536238264598 -0.0920936484298146 1.45814943347206 0.306978828099382 -0.575585302686341 0 -0.951634367108084 1.87257085140623 1.79582614438138 1.00535566202548 0.966983308513053 -0.0767447070248455 -0.583259773388826 0.115117060537268 0.237908591777021 2.86257757202674 2.32536462285282 1.90326873421617 1.84187296859629 0.498840595661495 0.706051304628578 -0.905587542893177 -0.790470482355908 -0.943959896405599
RNA_32 -0.102484013967676 0.403530804997725 -0.0932047142174887 -0.826874402453511 -0.864762992222145 -0.481056637239069 -0.620367115870371 -0.686696249323203 -0.659991061042269 -0.45001305724735 0.980003383565904 -0.576472578568179 0.486799066346462 -0.480393815473482 0.871114118725248 0.25621003491919 -0.454772811981563 1.10170315015252 -0.525230571584341 -1.1401346553904 -0.781440606503531 -1.44758669729343 0.435557059362624 1.99843827236969 2.01124877411565 1.08889264840656 -0.26261528579217 -0.967192881819944 -0.826277362614389 -0.134510268332575 3.3563514574414 1.70379673221262 2.01124877411565 1.85752275316413 0.81346686086843 1.22340291673913 -0.0320262543648988 -0.826277362614389 -0.640525087297976
RNA_35 -0.145182914364964 0.502090912178832 -1.6864961280151 -1.13591158778666 -0.966648042414888 -1.2215904438481 -1.25464190898565 -1.29625214889654 -1.07809429482866 -1.62057530550891 0.623076674149635 -1.41553341505839 0.0846900333795621 -0.865048198091241 0.550485216967154 -0.169380066759124 -0.0846900333795621 0.865048198091241 -0.538386640770073 -0.931590367175183 -0.483943047883212 -1.4457798555511 0.296415116828467 1.69380066759124 1.92972290343431 0.659372402740876 0.0362957285912409 -0.326661557321168 -0.199626507251825 0.308513693025547 2.72822893244161 1.50022344843796 1.5365191770292 1.54256846512774 0.901343926682482 0.592830233656934 -0.42949945499635 -0.973935383864964 -0.82270318140146
RNA_36 -0.449562363096588 0.145884475441939 -0.672140135300149 -0.968256771047958 -0.615587589673358 -1.04398877843344 -1.08198921913616 -0.78390086240849 -1.11344713411021 -0.684777071330185 0.37215427408658 -1.36059602606053 0.116112133515013 -0.794921529448934 0.616287477887376 0.401926616013506 -0.592469604345835 0.634150883043532 -1.01523685970819 -1.53327560923671 -1.08669048033281 -1.60472922986133 0.0267951077342337 1.98581520652599 1.93817945944291 1.36059602606053 -0.116112133515013 -0.586515135960449 -0.419790021169662 0.294746185076571 2.47408161412758 1.37250496283131 1.71190966079827 1.83099902850597 1.14623516418666 0.890193023615098 0.104203196744242 -0.604378541116605 -0.395972147628121
RNA_38 -0.134904429610683 0.337261074026708 -1.01003448048716 -0.973023750692426 -1.01751046699886 -1.00449671497184 -0.957794892459278 -0.970254867934765 -0.947919213689627 -1.01012677964509 0.263676839693609 -1.16508371027408 0.355657132609983 -0.674522148053417 0.62546599183135 0.171696546777233 -0.613201952775834 0.741974362858759 -0.797162538608584 -1.53300488193958 -1.05470735877443 -1.52074084288407 -0.0490561562220667 1.91932211218836 1.77828566304992 1.05470735877443 -0.0306600976387917 -0.533485698914975 -0.398581269304292 0.312732995915675 2.81459696324108 1.6188531553282 1.73536152635561 1.77828566304992 0.558013777026009 1.1037635149965 -0.11037635149965 -0.723578304275484 -0.5886738746648
RNA_39 -0.134938768559139 0.386415564510262 -0.87101536166965 -0.820793507306808 -0.998970300659046 -0.956872569796076 -0.951887312193882 -0.968043242675189 -0.956687930625624 -0.947363655584607 0.368014823343107 -1.15311311314173 0.355747662565003 -0.55202223501466 0.650159521239488 0.226942474394916 -0.466152109567935 0.778964709409576 -0.65629310162854 -1.48432645415053 -0.993640023026388 -1.44752497181622 -0.0613358038905177 1.96887930488562 1.97501288527467 1.06724298769501 -0.0122671607781036 -0.545888654625608 -0.337346921397848 0.368014823343107 2.80304623779666 1.67446744621114 1.91367708138415 1.895276340217 0.693094583962851 1.11017805041837 -0.116538027391984 -0.650159521239488 -0.564289395792763
RNA_4 -0.00342317307778589 0.325201442389659 -0.331542849977219 -1.36140234121545 -0.780934211473373 -0.620901013860152 -0.833591623201261 -1.18951864557559 -1.65034830713539 -0.748061966497972 0.996143365635693 -0.688057788634963 0.243045288522798 -0.879755480990973 0.872909134835401 0.00342317307778589 0.0376549038556446 0.783906634812968 -0.824984711746399 -1.54385105808144 -1.08514586565813 -1.70816336581516 0.311508750078516 1.65339259657058 1.59862182732601 0.475821057812238 -0.2909697116118 -0.688057788634963 -0.462128365501095 0.023962211544501 3.13220336617409 1.31792163494757 1.454848558059 1.23576548108071 0.557977211679099 1.07145317334698 -0.468974711656667 -1.20838009645842 -1.05091413488027
RNA_40 -0.119374236547013 0.37006013329574 -1.03262501760821 -1.00315813193745 -1.00513456939098 -0.973242058920709 -0.957520394374213 -1.01843060316924 -0.941619059664291 -0.958778127299184 0.179061354820519 -1.16986751816073 0.274560744058129 -0.710276707454726 0.626714741871817 0.173092642993169 -0.596871182735064 0.668495724663272 -0.805776096692336 -1.49814666866501 -0.984837451512855 -1.55783378693852 -0.0656558301008571 1.85626937830605 1.76076998906844 1.65333317617613 0 -0.519277928979506 -0.393934980605142 0.304404303194882 2.74560744058129 1.65930188800348 1.68914544714023 1.72495771810433 0.584933759080363 1.05049328161371 -0.083561965582909 -0.728182842936778 -0.590902470907713
RNA_41 -0.184752883732894 0.387981055839076 -0.93678865942123 -0.937622898750867 -1.03263383667976 -0.953010036514132 -1.03569272859143 -0.979798484119155 -0.989067844217507 -0.974978416868012 0.320238331803682 -1.12699259077065 0.264812466683814 -0.622001375234075 0.603526086860785 0.160119165901841 -0.603526086860785 0.708219387642759 -0.788278970593679 -1.52729050552525 -1.00998243107315 -1.48418149932091 -0.0862180124086837 1.9029547024488 1.9029547024488 1.00998243107315 -0.0431090062043419 -0.566575510114207 -0.369505767465787 0.307921472888156 2.75897639707788 1.68125124196933 1.81057826058236 1.86600412570222 0.615842945776312 1.09004201402407 -0.160119165901841 -0.739011534931574 -0.597367657403022
RNA_42 -0.106119213286743 0.337084559852008 -1.0023624875131 -1.01871084521596 -1.06822569559716 -1.01908666953097 -0.976430609777526 -1.05619931751689 -0.987047643555358 -0.961961373649705 0.249692266557043 -1.20476518613773 0.305873026532377 -0.69913834635972 0.642957586384385 0.1435730532703 -0.605503746400829 0.749076799671129 -0.848953706293946 -1.58554589263722 -1.02373829288388 -1.58554589263722 -0.0249692266557043 1.82899585253034 1.7228766392436 0.992526759564246 -0.0561807599753347 -0.549322986425494 -0.405749933155195 0.31835763986023 2.84024953208636 1.62924203928471 1.67918049259611 1.67918049259611 0.486899919786234 1.01749598621995 -0.199753813245634 -0.799015252982537 -0.686653733031868
RNA_44 -0.173433405496668 0.340672760797026 -0.946839156420757 -0.891460686982083 -1.01499009803698 -1.00305669048117 -0.976020063987545 -0.991496201911484 -0.906470679270399 -0.879713738919335 0.334478710600716 -1.13970523612096 0.340672760797026 -0.557464517667861 0.644181220416194 0.272538208637621 -0.576046668256789 0.792838425127624 -0.867167027483339 -1.51754229809584 -1.02821233258739 -1.46179584632906 0.0371643011778574 1.93254366124858 1.85821505889287 1.1025409349431 -0.111492903533572 -0.637987170219885 -0.464553764723217 0.260150108245002 2.81209878912454 1.60425900084418 1.80866265732239 1.86440910908918 0.70612172237929 1.12731713572834 -0.123881003926191 -0.668957421201433 -0.600822869042027
Unanno_41 -0.341548499079838 -0.00331600484543532 -0.561647955935075 -0.296321900281518 -0.816492737049112 -0.809904505254211 -0.93418251079657 -1.05875998473652 -1.05316996988024 -0.778460675003642 1.37614201085566 -0.26196438278939 0.480820702588122 -0.838949225895136 0.659884964241629 0.116060169590236 0.00331600484543532 1.40267004961914 -0.513980751042475 -1.2302377976565 -0.719573051459465 -1.48888617560046 0.494084721969863 1.91333479581618 2.05260699932446 1.04454152631213 -0.129324188971977 -0.527244770424216 -0.374708547534191 0.208908305262425 3.35248089873511 1.71437450509006 1.91996680550705 1.78732661168964 1.21034176858389 0.918533342185584 -0.0696361017541418 -0.726205061150335 -0.480820702588122
[+] Show/hide bicluster #34 motif PSSM #1. bicluster 34 motif PSSM #1 Methanococcus maripaludis S2 15x4
POSITION A C G T
1 0.090909 0.545455 0.090909 0.272727
2 0.272727 0.545455 0.181818 0
3 0 0 1 0
4 0 0 0 1
5 0.090909 0 0.818182 0.090909
6 0 0.181818 0.818182 0
7 0.181818 0.363636 0 0.454545
8 0 0.272727 0.090909 0.636364
9 0.181818 0.272727 0.181818 0.363636
10 1 0 0 0
11 0 0 1 0
12 0 0.727273 0 0.272727
13 0 0.636364 0 0.363636
14 0 0 0.181818 0.818182
15 0 0.181818 0.818182 0 [+] Show/hide bicluster #34 motif PSSM #2. bicluster 34 motif PSSM #2 Methanococcus maripaludis S2 23x4
POSITION A C G T
1 0 0.166667 0.833333 0
2 0 0.166667 0.833333 0
3 0 0 0.166667 0.833333
4 0.166667 0 0 0.833333
5 0 0.833333 0.166667 0
6 0.666667 0 0.166667 0.166667
7 1 0 0 0
8 1 0 0 0
9 0 0.166667 0 0.833333
10 0 0.5 0 0.5
11 0 0.833333 0 0.166667
12 0 0.833333 0.166667 0
13 0 0 1 0
14 0 0.166667 0.833333 0
15 0.166667 0.666667 0 0.166667
16 0.166667 0 0.333333 0.5
17 0 0.333333 0.666667 0
18 0.333333 0.333333 0.333333 0
19 0.166667 0.166667 0.166667 0.5
20 0 0.5 0.333333 0.166667
21 0 0.666667 0.333333 0
22 0.666667 0.166667 0.166667 0
23 0 0.166667 0.5 0.333333 |