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[+] Show/hide bicluster #29 rows and columns.
bicluster 29
Methanococcus maripaludis S2
20x38
[+] Show/hide bicluster #29 rows (genes).
bicluster 29 genes
Methanococcus maripaludis S2
20
[+] Show/hide bicluster #29 rows (short gene names).
bicluster 29 short names
Methanococcus maripaludis S2
20
short_name
[+] Show/hide bicluster #29 rows (long gene names).
bicluster 29 long names
Methanococcus maripaludis S2
20
long_name
[+] Show/hide bicluster #29 rows (NCBI RefSeq gene IDs).
bicluster 29 NCBI RefSeq IDs
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #29 gene upstream sequences.
bicluster 29 upstream sequences
Methanococcus maripaludis S2
20
upstream
[+] Show/hide bicluster #29 columns (arrays; conditions).
bicluster 29 arrays
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #29 ratios.
bicluster 29 ratios
Methanococcus maripaludis S2
20x38
GENES ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0101 0.565964837031383 1.15820265345944 1.16911633633129 1.21413527817768 0.610131153068168 0.614394304775224 -2.85462206083685 -2.0526369017154 0.45318086535609 0.509828473525602 0.260578997579752 0.203931389410241 0.215260911044143 0.192601867776338 0.271908519213654 0.271908519213654 -0.328556127383165 0.430521822088286 0.362544692284872 -0.407862778820481 -0.0226590432678045 -0.759077949471451 -0.464510386989993 -1.54081494221071 -1.74474633162095 -1.90335963449558 -1.97133676429899 -2.29989289168216 -2.32255193494996 -2.14127958880753 -1.16694072829193 -0.0226590432678045 0.657112254766331 0.430521822088286 0.35121517065097 -0.260578997579752 0.10196569470512 -0.124624737972925
MMP0221 0.357058900917097 -0.174947452774551 0.428373054087159 0.334538642021288 0.348022994570013 0.156044742798376 -3.58537648987215 -1.49634447941491 0.36943545507435 0.951296296816451 1.03441927420818 0.992857785512315 1.16833962667263 1.3207317518908 1.23760877449907 1.07136281971561 0.701927364641265 -0.568007012176813 0.374053398262779 0.845083603482575 -0.535681409857807 -0.88202714899001 -1.14063196754206 -2.07345649160479 -1.9810976278362 -1.75020046841473 -1.72249280928416 -1.25608054725279 -1.35767529739824 -1.12216019478834 -0.51720963710409 0.406379000581785 0.51259169391566 0.43870460290079 0.327873966378485 -0.452558432466079 -0.258604818552045 0.397143114204926
MMP0286 1.13028529205816 1.89424604738004 1.64162616774941 1.11527979764677 0.905038062570276 0.900915670022877 -1.39146129882426 -2.75432243667533 1.29821710197204 1.36394961346429 1.01337621883893 0.629936568467444 0.388917359662509 0.0383439650371488 0.0821656393653187 0.0492993836191913 -0.0164331278730638 -0.345095685334339 0.268407755260041 -0.345095685334339 -0.936688288764634 -0.246496918095956 -1.33108335771816 -2.95248530786045 -2.59095649465305 -1.73643384525374 -1.42968212495655 -0.728535335705827 -0.564204056975189 -0.783312428616039 -0.202675243767786 -0.246496918095956 0.377961941080466 0.750446172869912 0.0712102207832764 -0.202675243767786 -0.279363173842084 -0.180764406603701
MMP0567 0.935775242558171 0.592014220012447 0.598576672114866 0.589780192185819 0.859678674351968 0.609886442625468 -3.26056671134727 -1.60822390790762 1.15493665255597 0.867362064369339 0.635447073896254 0.347872485709628 0.0417446982851554 0.264383089139317 0.0417446982851554 0.310766087233934 -0.264383089139317 -0.255106489520394 1.33119204531551 -0.449915081517786 -0.672553472371948 -0.440638481898862 -1.48889423883721 -2.37017120263493 -2.01766041711584 -1.89706462206984 -2.33306480415924 -0.904468462845033 -1.07144725598565 -0.997234459034267 -1.2477026487452 -0.0974042959986958 1.03434085750996 0.941574861320727 0.876638663988263 -0.16234049333116 -0.16234049333116 -0.125234094855466
MMP0603 0.760301592772102 -0.0288748644406249 0.213689513748493 0.437654475157067 0.401789200505208 0.134940314579457 -4.53659967795899 -1.60168304216169 0.459314056685244 0.771740876968608 0.375378493027027 0.170202670751385 -0.0816040202232665 0.00233154343495048 0.179528844491187 0.29610601623871 -0.496618751644451 0.0862671070931677 0.920959656805438 -0.10025636770287 -0.916296569935537 -0.855676440626825 -0.962927438634547 -1.66705355598959 -1.7043582509488 -1.7043582509488 -1.7090213378187 -1.52249786302266 -1.47586699432365 -1.2147341296092 -1.12147239221118 0.0442993252640591 0.920959656805438 1.2380495639587 1.28001734578781 -0.160876497011583 -0.128234888922276 0.137561062662078
MMP0657 1.79665138839729 0.591977128755101 0.790690074167954 0.884353292430943 0.639727004732312 0.553960881342476 -1.78514022119425 -1.01627540042784 0.259285393103095 0.387402881459918 0.277587891439784 -0.143369570304064 -0.155571235861857 0.0823612425151006 0.14947040308296 0.393503714238814 -0.14947040308296 -0.326394553670954 0.680242854846942 -0.619234527057979 -0.527722035374534 -0.729049517078113 -1.54046027667133 -2.11393855788758 -2.04682939731972 -1.90651024340511 -1.94311524007849 -2.06513189565641 -2.00412356786745 -1.46725028332457 -1.51605694555574 -0.4179070453544 1.25982196884209 1.44284695220899 1.49775444721905 0.448411209248881 0.576528697605704 -0.247083727545302
MMP0839 0.152623344043244 -0.327822114639346 0.213527264843738 0.437803005090342 0.310736044428899 0.683284842220871 -3.57812380929305 -1.17267322774641 1.07640184200411 1.09894428895708 0.884791042903905 0.377585986462176 0.433942103844591 0.467755774274039 0.557925562085902 0.569196785562385 0.298687422126796 0.0619917291206559 0.760807584662594 -0.749536361186111 -1.70759035668716 -0.185975187361967 0.00563561173824144 -0.0845341760736215 0.140890293456036 -1.22292774719839 -2.21479541312888 -2.22606663660537 -1.9442860496933 -1.30182631153377 -1.36945365239267 -0.873519819427423 0.456484550797556 0.907333489856871 0.974960830715769 -0.400128433415142 -0.467755774274039 -0.772078808139077
MMP0840 1.27046017746178 -0.425227646749286 -0.176726448922455 0.893270877758182 0.421229539921948 0.103392070380041 -3.21587387388483 0.177165863484882 1.03187887347952 1.9163464793191 1.47411267639931 0.110558450729948 0.202690493004905 0.423807394464801 0.294822535279862 0.350101760644836 1.36355422566936 0.294822535279862 -0.386954577554818 -0.368528169099827 -1.43725985948932 1.0687316903895 -0.442233802919792 -1.73208239476919 -2.28487464841893 -1.71365598631419 -1.52939190176428 -0.165837676094922 0.12898485918494 0.423807394464801 -0.12898485918494 -0.884467605839585 -0.294822535279862 0.147411267639931 0.221116901459896 -0.95817323965955 -0.902894014294576 -0.0368528169099827
MMP1030 1.39312992470494 0.314834926278793 0.574368793387828 0.582385283570674 0.559877445749607 0.348596683010393 -3.83038416896492 -1.62076201653003 0.555649440024356 0.50955870306381 0.345680527204092 0.243256667291769 0.0435301404627376 0.12034803539698 0.110105649405748 0.243256667291769 -0.350801720199709 -0.345680527204092 0.233014281300536 -0.473710352094497 -0.514679896059426 -1.85643246091087 -1.58500923214321 -1.73864502201169 -1.87179603989772 -1.95885632082319 -1.94349274183634 -1.89228081188018 -1.9947046717925 -1.97421989981004 -1.92300796985388 -0.504437510068194 0.888526984739408 0.796345510818317 0.693921650905993 -0.00256059649780809 0.0640149124452024 -0.483952738085729
MMP1031 0.602391612577996 0.178901124278689 0.512467924577372 0.63984166788673 0.533751313815292 0.501635714574391 -4.07766815702155 -2.5722084680542 0.553319167713669 0.636497866128143 0.528003911674482 0.253152560391875 0.0795622332660178 0.144658605938214 0.216987908907321 0.394194701181634 -0.549702702565214 -0.379728840587812 0.473756934447652 -0.300166607321795 -0.162740931680491 -0.925815078004571 -1.00537731127059 -1.42850373363987 -1.71058801521938 -1.91311006353288 -2.06138513461955 -1.54423061839044 -2.15541322847939 -1.7250538758132 -1.50806596690588 -0.245919630094964 0.91858214770766 0.936664473449937 0.922198612856116 -0.0650963726721964 0.318248933064071 -0.25676902554033
MMP1407 0.569427739123344 -0.026225516274158 0.318828609788707 0.297642441911354 0.407415867120049 0.263474553520915 -1.67230765318364 -1.88458474356365 0.696889358175085 0.90733614455469 0.569241307420243 -0.162147523931827 0.0172497365884922 0.231146470285796 0.320845100545955 0.338094837134447 -0.369144362993733 -0.272545838098177 1.1108830362989 -0.0172497365884922 -0.665839832315799 -0.838337198200721 -1.24198103437144 -1.78362276325009 -1.84917176228636 -1.97336986572351 -2.13551738965533 -2.2217660725978 -2.18381665210311 -1.7698229739793 -1.47312750465723 -0.231146470285796 1.07293361580421 1.37997892707938 1.37997892707938 -0.127648050754842 0.17594731320262 -0.151797681978731
MMP1408 0.5753552642176 -0.0685351871967372 0.24856029843294 0.355448596858039 0.430716580285819 0.406118692075788 -1.76113369877813 -2.42000015153169 0.725616553631048 0.92409781341645 0.604465654800997 -0.00644419674627929 0.0863522364001425 0.20234777783317 0.333809391457267 0.496203149463505 -0.375052250633455 -0.524557615147134 0.882854954240263 -0.0889299150986542 -0.679218337057837 -0.645708513977185 -1.13804514539292 -1.69224606557294 -1.81339696440299 -1.96032465021816 -2.22582555616487 -2.26449073664254 -2.20520412657677 -1.74122196084466 -1.29270586730363 -0.0476870559224667 1.04267103354799 1.40096837264112 1.34425944127386 0.00644419674627929 0.331231712758756 -0.0115995541433027
MMP1409 0.489344442521117 -0.129813913501975 0.23950861488069 0.345662372171904 0.347701528229119 0.406640979887881 -1.6046727255798 -2.29822106184902 0.729500121404135 0.924901939637385 0.638312606228618 -0.0208428606115467 0.0833714424461868 0.213639321268354 0.27356254552655 0.497623297100677 -0.380382206160727 -0.698235830486814 0.875400145684961 -0.12505716366928 -0.690419757757484 -0.614864388040628 -1.16720019424662 -1.70911457014683 -1.75861636409925 -1.9175431762623 -2.25102894604704 -2.36305932183411 -2.31876824303457 -1.81332887320456 -1.38605023066786 -0.0312642909173201 0.992641236624912 1.39386630339719 1.37823415793853 0.0208428606115467 0.29701076371454 -0.0338696484937634
MMP1422 0.604572115275864 -0.0733909401299887 0.360726240444723 0.414363549481415 0.462793963733051 0.414614484270283 -3.43936741638467 -1.97102252015984 0.268831908481274 1.05657191937989 0.873182710493441 0.222984606259662 0.247992225653269 0.306343337571685 0.343854766662095 0.3605265129245 -0.427213497974118 -0.973213188067869 0.193809050300454 -0.523076038982945 -0.648114135950979 -1.63174716543285 -1.66925859452326 -2.21109034805141 -2.31945669875704 -1.88182335936892 -1.79012875492569 -2.26527352340423 -2.19441860178901 -1.8193043108849 -0.264663971915673 0.0937785727260259 0.773152232919014 1.12325890442951 0.79815985231262 0.0729388898980202 0.256328098784471 0.0937785727260259
MMP1432 0.543999227230461 -0.272776188830304 -0.0179915960102899 0.219502661895659 0.37974108213107 0.352373899938629 -2.52272180910687 -2.0514226260052 0.958506746577362 1.2950816346885 1.00606624163654 0.278040124961372 -0.0658516085434829 -0.021950536181161 0.00731684539372033 0.23048062990219 -0.417060187442058 -0.212188516417889 1.03533362321143 -0.00731684539372033 -0.369500692382876 -0.954848323880502 -1.09752680905805 -1.3682500886257 -1.67555759516195 -1.7450676264023 -1.84384503921752 -1.52190384189383 -1.47068592413778 -0.984115705455383 -1.25118056232618 -0.354867001595436 1.2584974077199 1.78896869876462 1.90603822506414 -0.0841437220277837 0.343891733504855 -0.248772743386491
MMP1434 0.6538929674704 -0.214860065870175 0.379470356845856 0.696859212121341 0.831227690847679 0.766526426755187 -3.18298564373321 0.557740696033605 0.463815268643979 0.588136887043397 0.349056851659902 -0.047816007076699 -0.262988038921844 -0.157792823353106 -0.00956320141533979 0.0812872120303882 -0.564228883505047 0.717240106150484 1.05673375639505 -0.396872858736601 -0.597700088458736 -1.07107855851806 -1.20496337833281 -1.65443384485378 -1.78353706396087 -1.59227303565407 -1.49664102150068 -1.35797460097825 -1.3818826045166 -1.19540017691747 -1.04717055497971 -0.339493650244562 0.89894093304194 1.47751461867 1.59705463636174 0.0621608091997086 0.296459243875533 -0.239080035383495
MMP1523 0.289464554373759 0.495381934451181 0.857790311517937 0.634364536762783 0.53659639775553 0.442701793385472 -0.713317404382956 -1.85260291028345 0.180146686308362 -0.458087288041264 -0.0874998190640617 0.128676204505973 0.375734517157441 0.602204637087954 0.674263311611299 0.7669101788556 -0.47867548076222 -0.406616806238875 0.0566175299826282 -0.663969215250821 -0.777204275216077 -1.14779174419328 -0.880145238820856 -1.38455596048427 -2.63014162010209 -3.02131728180025 -2.60955342738113 -2.78455306550926 -2.61984752374161 -1.82720210398482 -1.21985041871662 0.211028975389796 0.643381022529865 0.540440058925087 0.396322709878397 0.33455813171553 0.159558493587407 0.293381746273619
MMP1524 1.09068072067892 1.09084081837233 1.50918998318729 1.44178662048965 1.21011756756739 1.28216392292907 -1.77100047173878 -2.08047958845164 -0.191466246850282 -0.180829233136378 -0.0425480548556183 0.25528832913371 0.404206521128374 0.680768877689893 0.893509151967984 0.936057206823602 0.0319110411417137 0.0212740274278092 0.425480548556183 -0.436117562270088 -0.76586498740113 -0.308473397703233 -0.691405891403797 -1.80829233136378 -2.70180148333176 -2.57415731876491 -2.24440989363387 -1.80829233136378 -1.6168260845135 -0.99987928910703 -0.829687069684557 0.159555205708569 0.680768877689893 0.563761726836942 0.361658466272756 0.404206521128374 0.287199370275424 0.425480548556183
MMP1537 1.72795952785038 -0.579061916839169 0.220795428339523 0.532370967562651 0.329723006845903 0.122808773223837 -3.32798665692397 -3.3311519561763 -0.180581915809541 -0.244585632805327 -0.308589349801114 -0.203440386165179 0.011429235177819 0.0617178699602227 0.217155468378562 0.212583774307434 -0.313161043872241 0.313161043872241 0.491457112646218 0.788617227269513 -0.0571461758890952 -1.21835646995551 -1.76238806441969 -1.96354260354931 -1.86753702805563 -1.6480957126415 -1.25950171659566 -1.67095418299714 -1.52465997272106 -1.41036762094287 -1.36922237430272 0.0571461758890951 0.605749464424409 0.628607934780047 0.509743888930729 0.0388593996045847 -0.400023231223666 0.0617178699602227
MMP1538 1.69152637890887 -0.53725758848341 0.196259083790255 0.330352667372125 0.447109615545564 0.0245202296457965 -2.29264520707378 -3.30602473897788 -0.0775716361647939 -0.289130643886959 -0.289130643886959 -0.166896550536375 -0.0493637684685052 0.133987371557371 0.213909663363523 0.298533266452389 -0.336143756714107 0.312637200300533 0.571209320849846 0.829781441399159 -0.101078192578368 -1.3845361727595 -1.84056336718284 -2.12264204414572 -2.16025253440744 -1.93458959283713 -1.74183583024583 -1.52557551124095 -1.57728993535081 -1.29521125838792 -0.895599799357166 0.0399611459030756 0.646430301373282 0.740456527027578 0.58531325469799 0.0869742587302234 -0.383156869541255 0.0211559007722165
[+] Show/hide bicluster #29 motif PSSM #1. bicluster 29 motif PSSM #1 Methanococcus maripaludis S2 15x4
POSITION A C G T
1 0 0 1 0
2 0 0 0 1
3 0.333333 0 0.333333 0.333333
4 0 0.666667 0.333333 0
5 0 0.333333 0 0.666667
6 0 0.666667 0.333333 0
7 0.666667 0 0 0.333333
8 0 1 0 0
9 0 1 0 0
10 0.666667 0 0 0.333333
11 0 0.333333 0 0.666667
12 0 1 0 0
13 0 0.666667 0 0.333333
14 0 1 0 0
15 0 0.333333 0.666667 0 [+] Show/hide bicluster #29 motif PSSM #2. bicluster 29 motif PSSM #2 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0 0 1 0
2 0 1 0 0
3 0 0 1 0
4 0 0.5 0.5 0
5 0 0 0 1
6 0 0 1 0 |