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bicluster 25
Methanococcus maripaludis S2
20x39
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bicluster 25 genes
Methanococcus maripaludis S2
20
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bicluster 25 short names
Methanococcus maripaludis S2
20
short_name
[+] Show/hide bicluster #25 rows (long gene names).
bicluster 25 long names
Methanococcus maripaludis S2
20
long_name
[+] Show/hide bicluster #25 rows (NCBI RefSeq gene IDs).
bicluster 25 NCBI RefSeq IDs
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #25 gene upstream sequences.
bicluster 25 upstream sequences
Methanococcus maripaludis S2
20
upstream
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bicluster 25 arrays
Methanococcus maripaludis S2
39
[+] Show/hide bicluster #25 ratios.
bicluster 25 ratios
Methanococcus maripaludis S2
20x39
GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_minus30m
MMP0026 0.485551724532545 0.757373264232736 0.0164878309093189 0.0969459700566443 0.124838128049575 -0.0417102295182388 -2.99224457557324 -3.45380614268167 -0.218275545890777 -0.63700822576288 -0.601371401943978 -0.619189813853429 -0.55682537217035 -0.423187282849466 -2.16048244402096 0.521188548351447 0.351913635211661 0.735009491264861 1.63483929269215 1.22501581877477 0.806283138902666 0.307367605438033 0.209366339936051 0.0668190446604419 0.441005694758917 0.539006960260898 -0.298458399483307 0.0133638089320884 -0.0579098387057163 -0.485551724532545 -0.948830434178276 -1.00228566990663 -0.298458399483307 -0.120274280388795 1.18046978900114 2.50794147625525 1.7239313522394 1.24283423068422 -0.0044546029773628
MMP0133 0.313402012966657 1.60112677794501 0.533142103459038 0.63025522615159 0.803968268948314 0.810979106481351 -4.03299222225125 -2.28625434344185 0.0718811956345544 -0.10638416953914 -0.33065349991895 -0.336403995569714 -0.204142595602134 -0.10638416953914 -0.664182247663282 -0.353655482522007 0.0201267347776752 0.63542976940946 1.02071297801067 1.04371496061373 1.08971892581984 0.583675308552581 0.520419856394174 0.278899039062071 0.10638416953914 -0.756190178075512 -0.324903004268186 -1.47500213442106 -0.85969909978927 -0.439912917283473 -0.842447612836977 -0.85969909978927 -0.296150526014364 -0.15813863039602 0.209893091252899 1.01496248235991 1.03796446496296 0.974709012804557 -0.10638416953914
MMP0137 -0.101821137905185 1.63674281998854 -0.126690885147469 0.115058542743426 0.381723806721995 0.583626340293693 -4.66554283234371 -3.68193539985447 0.535382112211132 0.00985365850695335 -0.0492682925347667 -0.0689756095486734 -0.200357722974718 -0.259479674016438 0.00328455283565112 -0.0229918698495578 0.200357722974718 0.758731705035407 0.778439022049314 0.390861787442483 0.436845527141598 0.134666666261696 -0.00328455283565109 -0.0426991868634645 0.00985365850695335 -0.187219511632113 -0.469691055498109 -1.47476422320735 -1.3236747927674 -0.936097558160567 -0.699609753993687 -1.19886178501266 -0.469691055498109 -0.476260161169411 0.331739836400762 1.00835772054489 0.732455282350198 0.666764225637176 -0.535382112211132
MMP0243 -0.456776478165613 2.12488274878585 0.996159022902586 0.660172397464006 0.720554328867717 2.27693364224425 -4.38161972115031 -2.51416382939394 0.509736069836989 0.112539132301673 0.0463396427124535 -0.536215865672676 -0.774534028193866 -0.54945576359052 0.430296682329925 0.271417907315799 -0.655374946933271 0.456776478165613 0.734814334440334 0.628895151097583 0.231698213562268 0.0463396427124535 -0.112539132301673 -0.337617396905019 0.099299234383829 -0.0728194385481413 -0.218458315644424 -1.38356933241468 -1.54244810742881 -1.26441025115409 -0.642135049015427 -0.430296682329926 -0.324377498987175 -0.125779030219517 0.496496171919145 0.152258826055204 -0.0330997447946097 0.0463396427124535 -0.0728194385481413
MMP0284 -0.0714859447408888 1.38565745737947 -0.142408039430507 0.353286976450989 0.513840517017164 0.691048212723653 -4.01880293328901 -3.75018451275754 0.177160819575246 -0.388510569243961 -0.419591414783478 -0.432023752999285 -0.419591414783478 -0.00932425366185507 -0.77391305393397 0.102566790280406 0.344997385488637 0.152296143143633 1.63796055993254 1.50120483955867 1.0039113109264 0.519050120509932 0.307700370841217 0.146079974035729 -0.0217565918776618 0.195809326898956 -1.14688320040817 -0.879587928768328 -1.5571503615298 -1.45769165580334 -1.41417847204802 -1.27742275167414 -0.991478972710588 -0.873371759660424 0.170944650467343 1.0039113109264 0.705535193747033 0.481753105862512 -0.848507083228811
MMP0315 -0.0585630140558897 0.253872670088763 -0.880274068697295 0.332028890519278 0.728098792443238 0.0513324729624652 -3.68880531243754 -2.75445644702559 0.110619026550014 -0.383913092144166 -0.0455490109323586 -0.0195210046852966 0.0976050234264828 0.1887030452912 0.110619026550014 0.579123138997131 -0.123633029673545 0.0325350078088276 1.35996332640899 1.25585130142075 0.540081129626538 0.448983107761821 -0.0976050234264829 0.0715770171794207 0.475011114008883 0.631179151491256 -0.370899089020635 -0.68323516398538 -0.214731051538262 -0.657207157738318 -1.3209213170384 -1.37297732953253 -0.305829073402979 -0.787347188973628 -0.0195210046852966 0.540081129626538 0.162675039044138 0.123633029673545 -0.579123138997131
MMP0316 0.162743158284425 0.640375297749236 -0.188055274364122 0.58289302550156 0.443269898052005 0.509733769913608 -4.38556750947512 -4.79480208457068 0.390583579882619 0.0650972633137699 -0.0108495438856283 0.0325486316568849 -0.06509726331377 0.238689965483823 0.108495438856283 -0.206141333826938 0.0108495438856283 0.781167159765239 1.48638751233108 1.29109572238977 0.813715791422124 0.596724913709557 0.292937684911965 0.216990877712566 0.466530387082018 -0.0976458949706549 -0.726919440337097 -0.19529178994131 0.379734035996991 -0.477379930967646 -0.954759861935292 -0.857113966964637 -0.705220352565841 -0.227840421598195 0.314636772683221 0.726919440337097 0.596724913709557 0.433981755425133 -0.292937684911965
MMP0412 -0.398380266713351 3.70067789729423 0.261357373977294 0.834763388973121 0.903650202198967 1.16106934635871 -3.70116824781461 -2.69408209287469 0.352056979886217 -0.222351776770242 -0.185293147308535 -0.268675063597376 -0.324263007789937 0 -0.166763832577682 0.379850951982497 -0.00926465736542677 0.889407107080969 1.92704873200877 1.53793312266084 0.91720107917725 0.565144099291033 -0.0741172589234141 -0.120440545750548 -0.176028489943109 -0.129705203115975 -0.731907931868715 -0.546614784560179 -0.6577906729453 -0.481762183002192 -0.389115609347924 -0.138969860481401 -0.768966561330422 -0.333527665155363 0.620732043483593 1.38043394744859 1.30631668852517 1.02837696756237 -0.528085469829326
MMP0588 0.0642381362783672 2.27662374996322 -0.769049179968575 0.0355710270285436 0.473128309751345 0.661230478799965 -3.86042916733532 -3.54645677348149 -0.286151697967272 -0.566463565363783 -0.554783904222262 -0.461346615090091 -0.461346615090091 -0.157675425410538 -0.169355086552059 -0.367909325957921 -0.00583983057076065 0.0525584751368459 1.15044662243985 1.33732120070419 0.765017804769645 0.134316103127495 -0.239433053401187 -0.367909325957921 -0.741658482486602 0.00583983057076065 -0.110956780844452 -0.496385598514655 -0.81173644933573 -0.823416110477252 -0.81173644933573 -0.566463565363783 -0.0759177974198885 -0.367909325957921 0.578143226505304 1.85122629093113 1.81618730750656 1.40739916755332 -0.402948309382485
MMP0610 0.244227619626215 0.710383803981176 0.0242676739843332 0.207445976959331 0.00645723379024072 0.15007979168301 -3.4028958807391 -2.96571171029631 -0.154792153284221 -0.374940993510668 -0.368061342253592 -0.368061342253592 -0.457496808595586 -0.19607006082668 -0.691404951336187 0.0722363381993031 0.237347968369139 -0.00343982562853824 1.23489740064523 1.00786890916171 0.677645648822034 0.19607006082668 -0.085995640713456 -0.154792153284221 -0.264866573397445 0.00343982562853823 0.106634594484685 -0.0653566869422266 -0.0791159894563796 -0.471256111109739 -0.588210182480039 -0.491895064880969 0.0791159894563796 0.395579947281898 1.71647298864058 2.56267009326099 2.32876195052039 2.03981659772318 0.402459598538974
MMP0878 0.0325514109670757 2.16000717894755 -0.743562022293588 0.472207843028553 0.540520531696958 0.890343086436807 -4.59986923582975 -3.43561385704444 0.581275195840637 0.0325514109670757 -0.218559473636079 -0.218559473636079 -0.0883538297677768 0.144156248568478 -0.283662295570231 -0.618476808374438 0.0604526203674262 0.841686483577242 1.3904102684508 1.2044022057818 0.785884064776541 0.478970761372685 0.190658264235729 0.125555442301578 -0.0790534266343266 -0.478970761372685 -0.618476808374438 -0.274361892436781 -0.702180436575489 -0.990492933712445 -0.981192530578995 -0.916089708644844 -0.702180436575489 -0.274361892436781 0.423168342571984 1.15790019011455 1.1299989807142 0.646378017774788 -0.153456651701928
MMP0921 -0.666349756929293 1.50407560523002 -0.085963323216993 0.304483340794111 0.459023364125309 1.24528461808518 -3.03069958525458 -4.21277542916322 0.159548533349267 0.197089364725566 0.197089364725566 -0.553727262800399 -0.347252690230759 0.00938520784407456 0.366023105918908 0.0844668705966709 -0.366023105918908 0.628808925552995 0.816513082434486 0.459875184359653 0.0469260392203727 -0.140778117661118 -0.403563937295206 -0.0844668705966711 -0.422334352983355 0.53495684711225 -0.459875184359653 -0.929135576563381 -1.19192139619747 -0.666349756929293 -0.854053913810784 -1.24823264326192 -0.497416015735951 -0.328482274542609 -0.366023105918908 0.722661003993741 1.07929890206857 0.872824329498934 -0.497416015735951
MMP0953 0.0116766050938991 1.93155427447647 -0.150033687470741 0.296723880270088 0.536095950557346 0.771835841573273 -3.15677185299795 -3.96604394918112 0.330837144327141 -0.12844265603289 -0.175149076408486 -0.105089445845092 -0.198502286596285 -0.284130723951545 -0.463172002057998 -0.151795866220688 1.30388756881873 0.634428876768518 0.821254558270904 0.727841717519711 0.720057314123778 0.424249985078334 0.78233254129124 0.447603195266132 0.0739518322613611 -0.112873849241025 -0.330837144327141 -1.32724077900653 -1.94999305068115 -1.84101140313809 -1.50628205711298 -1.39730040956993 -0.354190354514939 -0.0194610084898319 0.78233254129124 0.743410524311576 0.455387598662065 0.0194610084898319 0.175149076408486
MMP1011 -0.0973572749734637 1.30826429237473 -0.74668208912576 0.23047480780544 0.540248134707478 0.373548086516055 -4.12385301889936 -3.86162493897005 0.309609556666206 -0.436496301339855 -0.484944733677911 -0.184564453181964 -0.358978809598965 0.0286086491054817 -0.630290030692078 0.358057989004262 -0.184564453181964 0.26116112432815 1.35609569516821 1.20106071168643 0.794093880046765 0.406506421342318 -0.136116020843908 -0.271771631390465 -0.465565360742688 0.135195200249205 -0.436496301339855 0.0867467679111488 -0.581841598354022 -1.28918871048964 -1.43453400750381 -1.27949902402203 -0.426806614872244 -0.455875674275077 0.66812795596782 1.58864817039088 1.37547506810344 1.0847844740751 -0.436496301339855
MMP1014 -0.00403825311467595 0.453816882053738 0.274510674163134 0.327633942345733 0.224669625423587 0.349029124243685 -4.16170728560678 -3.92866999590427 0.803612369820514 0.133262352784306 -0.0201912655733798 -0.0524972904907874 -0.254409946224585 -0.246333439995233 0.0524972904907873 0.529011158022549 0.375557539664863 1.35281479341644 1.06206056915977 0.755153332444403 0.512858145563846 0.270562958683289 -0.109032834096251 -0.18979789638977 -0.286715971141992 0.383634045894215 -0.480552120646438 -1.21551418751746 -0.876300925884681 -0.642082245233476 -0.61785272654542 -0.690541282609587 -0.537087664251901 -0.650158751462828 0.246333439995233 0.472475614417086 0.383634045894215 0.35940452720616 -0.714770801297643
MMP1048 0.998626760066566 2.26412018059576 1.35938565010014 0.63137723992668 -0.528881407070785 -0.36414958093386 -3.75671429842483 -3.13847649513729 0.423659837603998 -0.141219945867999 0.0100871389905714 -0.191655640820856 -0.232004196783142 -0.44383411558514 0.504356949528569 -0.242091335773713 0.0504356949528568 0.494269810537997 0.161394223849142 0.413572698613426 0.353049864669998 -0.0100871389905714 0.58505406145314 -0.0100871389905714 -0.615315478424854 0.0907842509151424 0.22191705779257 -0.393398420632284 -0.796883980255138 -1.05914959400999 -1.18019526189685 -0.897755370160852 0.110958528896285 -0.413572698613426 0.22191705779257 0.0706099729339996 -0.0504356949528568 -0.554792644481426 -0.0100871389905714
MMP1195 -0.122990072137409 0.824619360720427 0.283788531811353 1.06797899337131 0.464350266177058 0.96858459495579 -1.89007230830398 -3.74752290016819 0.42573486509103 0.0567646486788041 0.245980144274818 0.0189215495596014 -0.0189215495596013 -0.0946077477980067 0.463577964210233 0.397352540751628 0.737940432824453 1.4380377665297 1.29612614483269 0.946077477980067 0.529803387668838 0.236519369495017 0.690636558925449 0.359509441632426 0.179754720816213 0.378430991192027 -0.0189215495596013 -0.27436246861422 -0.889312829301263 -0.832548180622459 -0.605489585907243 -0.539264162448638 -0.0473038738990034 -0.28382324339402 -0.463577964210233 -0.312205567733422 -0.160833171256611 -0.28382324339402 -0.444656414650632
MMP1356 -0.539226319553216 1.02774431766542 0.108929859162331 0.231183445661498 0.0310486715781717 -0.231972482856771 -4.67273048116874 -4.07691641619641 -0.0817722008272186 -0.132600436241218 -0.264753848317618 -0.600220202050015 -0.783201849540414 -0.569723260801616 -0.213925612903618 0.22319721165678 0.0808781524975805 -0.0817722008272186 0.741645212879577 0.711148271631177 0.619657447885977 0.22319721165678 0.548497918306378 0.568829212471977 0.304522388319179 0.253694152905179 -0.193594318738018 -0.874692673285614 -0.488398084139216 -0.600220202050015 -0.549391966636016 -0.651048437464015 -0.274919495400417 -0.183428671655218 0.731479565796777 1.26009321410237 1.21943062577117 1.14827109619157 -0.407072907476817
MMP1361 -0.133159908665283 0.763273445733706 -0.0305456786904197 0.165960520208149 0.247689639401496 0.300022998570802 -4.16875600640773 -3.50196219355263 0.517844089253877 0.115405254176578 -0.0651003997919159 -0.00887732724435218 0 0.0532639634661131 -0.28407447181927 -0.372847744262791 0.378765962425693 0.781204797502991 0.719063506792526 0.476416562113567 0.458661907624862 0.115405254176578 0.147955454072536 -0.0828550542806203 -0.144996344991085 -0.547435180068384 -0.269278926412016 -1.06232016024081 -0.887732724435217 -1.25762135961656 -1.4470043408294 -1.49435008613262 -0.289992689982171 -0.133159908665283 0.479375671195017 1.0268108512634 0.85814163362071 0.730899943118329 -0.106527926932226
MMP1425 0.640115132396958 1.88850081270443 -0.423098300067122 0.647988677353644 1.07033966917192 0.729913864909925 -4.24982861015472 -4.05798308556434 0.56764926835202 -0.197268185455666 -0.253630524157285 0.0120776440074898 -0.0120776440074898 0.0281811693508095 -0.157009372097367 0.205319948127326 -0.189216422784006 0.157009372097367 0.833357436516795 0.752839809800196 0.640115132396958 0.132854084082388 -0.245578761485625 -0.277785812172265 -0.342199913545544 -0.0442846946941292 -0.181164660112347 -0.53544221766538 -0.946082113920032 -1.03465150330829 -1.15542794338319 -1.14737618071153 -0.165061134769027 -0.374406964232183 0.583752793695339 1.36477377284634 1.22789380742813 0.728684521785217 -0.148957609425707
[+] Show/hide bicluster #25 motif PSSM #1. bicluster 25 motif PSSM #1 Methanococcus maripaludis S2 20x4
POSITION A C G T
1 0 0.6 0.4 0
2 0.6 0.2 0.2 0
3 0.6 0 0 0.4
4 0 0.2 0.8 0
5 0 0 1 0
6 1 0 0 0
7 0.4 0 0.6 0
8 0.2 0.4 0.4 0
9 0.6 0 0.4 0
10 0 0.6 0.2 0.2
11 0.4 0 0 0.6
12 0 0.8 0 0.2
13 0 0 1 0
14 0 0.6 0 0.4
15 0 0 0 1
16 0.2 0 0.8 0
17 0.2 0.6 0.2 0
18 1 0 0 0
19 0.8 0 0.2 0
20 0.2 0.6 0 0.2 [+] Show/hide bicluster #25 motif PSSM #2. bicluster 25 motif PSSM #2 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0 0 0 1
2 0.428571 0 0 0.571429
3 1 0 0 0
4 0.571429 0 0 0.428571
5 0 0 0 1
6 0 0.857143 0 0.142857
7 0 0 0.142857 0.857143
8 0 0 1 0
9 0 0 1 0
10 0.428571 0 0 0.571429
11 0 0.142857 0.857143 0 |