|
[+] Show/hide bicluster #23 rows and columns.
bicluster 23
Methanococcus maripaludis S2
21x37
[+] Show/hide bicluster #23 rows (genes).
bicluster 23 genes
Methanococcus maripaludis S2
21
[+] Show/hide bicluster #23 rows (short gene names).
bicluster 23 short names
Methanococcus maripaludis S2
21
short_name
[+] Show/hide bicluster #23 rows (long gene names).
bicluster 23 long names
Methanococcus maripaludis S2
21
long_name
[+] Show/hide bicluster #23 rows (NCBI RefSeq gene IDs).
bicluster 23 NCBI RefSeq IDs
Methanococcus maripaludis S2
36
[+] Show/hide bicluster #23 gene upstream sequences.
bicluster 23 upstream sequences
Methanococcus maripaludis S2
21
upstream
[+] Show/hide bicluster #23 columns (arrays; conditions).
bicluster 23 arrays
Methanococcus maripaludis S2
37
[+] Show/hide bicluster #23 ratios.
bicluster 23 ratios
Methanococcus maripaludis S2
21x37
GENES ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0035 -0.205289852468882 -0.520573420940763 5.77594431518218 -0.400309938230884 0.207853237158343 0.315628989758966 0.100077484557721 0.200154969115442 -0.592766639303424 0.269439381501556 0.66974931973244 0.500387422788604 0.538878763003113 0.723637196032751 0.631257979517932 0.0538878763003112 0.230948041287048 0.484990886702801 0.561973567131817 -0.454197814531195 -0.700542391904046 -0.223249773244147 -0.492689154745703 1.07005925796332 -0.554275299088916 -0.946886969276898 -0.762128536247259 -0.161663628900934 0.369516866059277 0.484990886702801 0.146267092815131 -0.469594350616998 -0.700542391904046 -1.10855059817783 -0.81601641254757 -0.554275299088916 -0.731335464075653
MMP0069 -0.657318936485183 -0.585363205762075 4.98264651054994 0.0352257305941549 -0.206322136337193 0.186193147426248 0.528385958912324 0.0855482028715191 0.347225058713813 0.26670910307003 0.47806348663496 -0.649159892377998 -0.095612697326992 0.437805508813069 0.437805508813069 0.216386630792666 0.699482364655363 0.820256298121037 0.920901242675765 0.61896640901158 -0.135870675148883 -0.377418542080232 -0.327096069802867 1.3536745042611 -0.236515619703612 -0.508256970001379 -0.880643264853874 -1.04167517614144 -1.07186865950786 -1.19264259297353 -0.810191803665564 -0.578708431189689 -0.981288209408602 -0.61896640901158 -1.00141719831955 -1.37380349317204 -0.598837420100634
MMP0113 0.587284619390879 -0.295122159275976 5.0145669610663 -0.0818653692565155 0.245596107769547 0.378627332811384 0.388860503968449 0.337694648183127 0.163730738513031 0.173963909670096 -0.0716321980994511 0.0613990269423867 0.0102331711570645 0.225129765455418 0.194430251984224 0.306995134711933 0.317228305868998 0.624223440580931 0.695855638680382 -0.0716321980994511 -0.419560017439642 -0.378627332811384 -0.194430251984224 0.849353206036349 -0.306995134711933 -0.296761963554869 -0.296761963554869 -0.235362936612482 -0.450259530910835 -0.501425386696158 -0.450259530910835 -0.214896594298353 -0.501425386696158 -0.429793188596707 -0.4604927020679 -0.429793188596707 -0.286528792397804
MMP0115 -1.01866203924702 -0.959358548423449 4.5026927761484 -0.254553054912609 0.166012861899527 0.825637299846983 0.93188553146268 1.02042572447576 0.17929389085149 0.121742765392987 -0.0066405144759811 0.0066405144759811 0.298823151419149 0.391790354082884 0.316531190021765 0.258980064563263 0.524600643602506 0.630848875218204 0.878761415654831 -0.0154945337772892 -0.219136977707376 -0.227990997008684 -0.112888746091679 0.732670097183247 -0.20142893910476 -0.307677170720457 -0.621994855916896 -0.754805145436518 -0.936312541113334 -0.936312541113334 -0.985009647270529 -0.927458521812026 -1.03813376307838 -1.05141479203034 -1.04698778237969 -0.980582637619875 -0.347520257576344
MMP0321 -0.087610353332159 -0.937092703852741 1.89272116956486 0.185934874866817 0.314659019005382 0.10011877877444 -0.0143026826820628 -0.0572107307282512 0.171632192184754 1.25863607602153 0.772344864831393 0.128724144138565 0.20023755754888 0.586409989964576 0.429080480461885 0.486291211190136 0.75804218214933 0.486291211190136 0.514896576554262 0.572107307282513 -0.672226086056953 0.171632192184754 -0.143026826820628 0.55780462460045 -0.643620720692827 -0.529199259236325 -0.300356336323319 -0.257448288277131 -0.429080480461885 -0.715134134103141 -0.471988528508073 -0.75804218214933 -1.04409583579059 -0.729436816785204 -0.386172432415696 -0.786647547513455 -0.157329509502691
MMP0322 0.804162301430026 0.363462534402813 5.40675271077279 0.119082699838133 0.0446560124392997 0.193509387236965 0 0.133968037317899 0.47633079935253 0.595413499190663 0.223280062196498 -1.16105632342179 -0.133968037317899 0.0893120248785994 -0.282821412115565 -0.43167478691323 0.0893120248785994 0.163738712277432 0.550757486751363 0.223280062196498 -0.416789449433464 0.0297706749595331 0.535872149271596 0.297706749595331 -0.372133436994164 -1.19082699838133 -0.595413499190663 -0.580528161710896 -0.714496199028795 -0.699610861549029 -0.759152211468095 -0.729381536508562 -0.669840186589495 -0.729381536508562 -0.461445461872763 -0.699610861549029 -1.25036834830039
MMP0476 -0.819344651603372 -0.16122258958006 5.01245526909863 -0.501794899481686 -0.347056384223016 0.139264663732803 0.006631650653943 0.187896768528385 -0.121580261988955 0.771482026075368 0.634427912560546 0.714007720407862 1.07653795615675 1.4081204888539 1.51864799975294 1.30643517882677 1.17822326618387 0.877588436538456 0.51063710035361 0.46642609599399 -0.019894951961829 -0.0596848558854869 0.360319685530903 1.13401226182425 -0.011052751089905 -0.647691213868432 -0.550427004277268 -0.457583895122066 -0.727271021715748 -0.784745327383254 -0.696323318664014 -0.837798532614798 -0.767060925639406 -0.727271021715748 -0.607901309944774 -0.638849012996508 -0.62116461125266
MMP0477 -0.904420966762078 -0.159533875811887 4.70278769155901 -0.515387444380922 -0.262707218731132 0.0340917764765591 -0.0381025737090955 0.0581565598717773 -0.134361707289968 0.868337600844122 0.81619723682115 0.820208034053686 0.992672315052749 1.43386001063175 1.44589240232936 1.1410718126566 1.24535254070254 0.731970494937886 0.503355052683313 0.671808536449841 -0.00601619584880455 -0.226610043638304 0.24265323256845 1.13706101542406 0.00601619584880455 -0.780100061728322 -0.603624983496722 -0.71592730600774 -0.800154047891004 -0.852294411913977 -0.808175642356077 -0.884380789774268 -0.876359195309195 -0.884380789774268 -0.752024481100568 -0.695873319845059 -0.72795969770535
MMP0496 -0.379994758044821 -1.35472485199244 4.31501805252475 -0.391438985661311 -0.133089255124846 -0.117431695698393 0.0469726782793573 0.0313151188529049 0.234863391396786 0.45406922336712 0.22703461168356 -0.0313151188529049 0.626302377058097 0.845508209028431 0.446240443653894 0.720247733616812 1.17431695698393 0.955111125013598 1.08820038013844 0.57932969877874 0.0313151188529049 0.195719492830655 0.383610205948085 0.861165768454884 -0.0469726782793573 -0.587158478491966 -0.93162478587392 -1.1038579395649 -1.315234991822 -1.15865939755748 -1.15083061784425 -0.955111125013598 -1.08820038013844 -0.994255023579729 -1.00991258300618 -0.947282345300372 -0.618473597344871
MMP0528 -0.441861617708707 -0.397016280850589 5.04232518175193 0.294635497358583 0.612444573161099 0.857422402425538 0.897148536900853 1.10902125410253 0.546234349035575 -0.0231735784439335 0.0165525560313811 -0.0165525560313811 -0.115867892219667 0.374087766309212 0.31449856459624 0.188699138757744 0.413813900784526 0.466782080084946 0.718380931761938 -0.8905275144883 -0.797833200712567 0.228425273233058 -0.0496576680941432 0.897148536900853 -0.632307640398756 -0.360845721484107 -0.592581505923442 -0.374087766309212 -0.354224699071554 -0.400571855959421 -0.585960483510889 -0.8905275144883 -1.05605307480211 -1.26130476959124 -1.0295689851519 -0.96997978343893 -0.221804250820506
MMP0563 -0.340672664251664 -0.262079867026203 5.52429072766211 0.0162767854754734 0.0748732131871774 0.63479463354346 0.530623206500431 0.550155349070999 0.335301780794751 0.270194638892858 -0.0162767854754734 0.107426784138124 0.530623206500431 0.784541059917815 0.778030345727626 0.73896606058649 1.02543748495482 0.992883914003874 0.960330343052928 0.393898208506455 -0.54364463488081 -0.901733915341223 -0.686880347064975 0.478537492978916 -0.602241062592514 -0.517601778120052 -0.830116059249141 -0.64130534773365 -0.797562488298194 -0.953819628862738 -0.93428748629217 -0.992883914003874 -1.18169462551936 -1.02543748495482 -1.05799105590577 -1.01241605657444 -0.615262490972893
MMP0742 -0.651152255216029 -0.394203139092074 4.00096341121877 -0.0331353454009536 -0.112660174363242 -0.205439141485912 -0.145795519764196 -0.205439141485912 0.112660174363242 1.02719570742956 1.29227847063719 0.835010704104031 0.788621220542696 0.874773118585175 0.835010704104031 0.73560466790117 1.13322881271261 1.17961829627395 1.19287243443433 0.801875358703077 -0.132541381603814 0.91453553306632 0.742231736981361 0.357861730330299 -0.132541381603814 -0.265082763207629 -0.265082763207629 -0.377742937570871 -0.357861730330299 -0.304845177688773 -0.125914312523624 -0.0132541381603814 0.0265082763207629 0.125914312523624 -0.00662706908019073 -0.318099315849155 -0.245201555967057
MMP0799 -1.15205642710889 -1.09191219570038 3.01621157960637 -0.238438282238503 -0.0411100486618109 0.18910622384433 0.205550243309055 0.633094749391889 0.60020671046244 -0.0739980875912596 -0.090442107055984 0.0575540681265354 1.14285935279834 1.521071800487 1.57040385888118 0.879755041362754 2.12950052068181 2.3926048321174 1.30729954744559 -1.27441150851614 -0.485098574209369 0.172662204379606 -0.304214360097401 0.0739980875912598 -0.45221053527992 -0.106886126520708 -0.320658379562125 -0.386434457421023 -0.649538768856613 -0.583762690997715 -0.485098574209369 -0.33710239902685 -0.090442107055984 -0.304214360097401 -0.435766515815196 -0.731758866180235 0.0575540681265354
MMP0997 0.26191056013306 -0.531753848684645 3.81328760369137 -0.0368250659267619 0.068274436800824 0.702625006835182 0.725146328848236 0.69887145316634 0.0907957588138781 0.544975752743803 0.672596577484443 0.702625006835182 0.743914097192448 0.815231616900453 0.796463848556241 0.537468645406118 1.05170549803752 1.25815094982385 1.41204665024639 0.529961538068434 -0.449715969499421 -0.179460105342771 -0.359630681447204 1.07047326638173 -0.41593398647984 -0.179460105342771 -0.599858116253115 -0.802550014370602 -0.810057121708287 -0.967706375799666 -1.00148835881925 -1.07655943219609 -1.22670157894979 -1.1216020762222 -1.14036984456641 -1.15913761291063 -0.0818677099528702
MMP1019 -0.331321797603733 -1.05296864598909 5.54270133152602 0.156547166328524 -0.166983644083759 0.166983644083759 0.354840243677989 0.208729555104699 0.187856599594229 0.198293077349464 0.344403765922754 0.563569798782688 0.448768543475103 0.292221377146579 -0.135674210818055 0.605315709803628 0.584442754293158 0.740989920621682 0.459205021230338 0.177420121838994 -0.386149676943694 -0.333967288167519 -0.323530810412284 1.16888550858632 -0.427895587964633 -0.292221377146579 -0.636625143069333 -0.553133321027453 -0.688807531845508 -0.793172309397857 -0.615752187558863 -0.594879232048393 -0.887100609194972 -0.532260365516983 -0.814045264908327 -1.0749572087892 -0.386149676943694
MMP1224 0.53374366618956 0.044508089546518 2.91289869622091 -0.551624975778866 -0.655827075689622 -0.440476069207393 -0.655827075689622 -0.509944135814564 -0.176497416100143 1.17812988273969 1.46294895582909 1.35180004925762 0.907204422971725 0.89331080965029 1.01140652288248 0.886364002989573 0.955832069596744 0.601544929900172 0.55986408993587 0.518183249971567 -0.0931357361715377 0.580704509918021 0.226417370221449 1.33095962927547 -0.044508089546518 -0.655827075689622 -0.808656822225399 -0.766975982261096 -0.822550435546833 -1.18378438190412 -1.21851841520771 -1.32272051511846 -1.40608219504707 -1.48944387497567 -1.07263547533265 -0.871178082171853 -0.607199429064603
MMP1329 -0.381098808996927 -1.02620555744118 3.84927949895861 -0.211531631843802 0.112294569991155 0.796507996448886 0.665932915063823 0.707716941107043 0.101848563480349 0.55624984670037 0.0235035146493114 0.211531631843803 -0.00261150162770127 0.00261150162770127 0.112294569991155 -0.138409586268167 0.201085625332998 0.389113742527489 0.540580836934162 0.154078596034375 -0.342106713228866 -0.279430674164035 0.0705105439479343 1.79932462148617 -0.326437703462658 -0.707716941107043 -0.916637071323145 -0.613702882509798 -0.373444732761281 -0.477904797869332 -0.848738029002912 -1.34492333826615 -1.41804538384179 -1.61651950754708 -1.40759937733098 -1.16211822432706 -0.676378921574628
MMP1553 -0.842103921692136 -1.02091924225209 4.32667952704068 -0.00302758220493523 -0.0272482398444171 0.469275241764961 0.511661392634054 0.626709516421593 0.233123829780013 0.360282282387293 0.287620309468847 0.778088626668354 0.681205996110427 0.251289323009624 0.311840967108329 0.105965377172733 0.293675473878717 0.445054584125479 0.614599187601852 0.00302758220493523 -0.681205996110427 -0.311840967108329 -0.245234158599754 0.505606228224184 -0.656985338470945 -0.396613268846515 -0.596433694372241 -0.541937214683406 -0.475330406174831 -0.547992379093277 -0.608544023191982 -0.808364448717707 -1.09295717598162 -1.06268135393227 -1.0566261895224 -0.887081586046023 -0.46322007735509
Unanno_39 0.0994621808540812 -0.835608561541061 2.05170991924907 0.122442429317566 -0.0717765964965042 0.0211107636754424 0.206885484019336 0.0295550691456194 0.384215898893052 1.04287172556686 0.468658953594822 -0.240662705900044 -0.637545062998361 -0.426437426243937 -0.358882982482521 -0.0971095129070352 0.130886734787743 0.451770342654468 0.493991870005353 0.527769091886061 -0.0633322910263273 0.477103259064999 0.105553818377212 1.5410857483073 -0.00422215273508849 -0.291328538721105 -0.78109825599137 -0.924651448984378 -1.33842241702305 -1.39753255531429 -1.10198186385809 -0.78109825599137 -0.789542561461547 -0.527769091886061 -0.603767841117653 -0.797986866931724 -0.358882982482521
Unanno_52 1.19255278256591 0.786137322127489 4.22122658529386 0.0134205985260932 0.369468228166948 0.208004768213537 0.158323703612488 0.0672417518438969 -0.35090720854827 1.58665431089266 1.43761111708951 1.37964987505496 1.10640401974918 0.895259495194723 0.857998696743936 0.642714083472721 0.949080648512527 1.19748597151777 1.176785527934 1.26372739098584 -0.814597144824733 -1.25758663751742 -1.28242716981795 0.15004352617898 -0.711094926905879 -1.02988175809595 -0.748355725356667 -0.632433241287551 -0.657273773588076 -0.764916080223683 -0.839437677125257 -1.03816193552946 -1.21618575034988 -1.17064477446559 -0.942939895044111 -0.92223945146034 -0.963640338627881
Unanno_7 0.173224630952885 0.897073979360315 5.15622423184213 0.193193453683543 0.349309375852063 0.0019514490271065 0.0487862256776622 -0.0019514490271065 -0.0448833276234495 0.337600681689424 0.563968768833777 0.610803545484333 0.497619501912157 0.915229593712947 1.04792812755619 1.01280204506827 0.595191953267481 0.361018070014702 0.0956210023282182 0.165873167304052 -0.107329696490857 -0.513231094129009 -0.470299215532666 -0.216610842008821 -0.142455778978774 -0.0839123081655794 -0.411755744719471 -0.185387657575117 -0.337600681689424 -0.524939788291648 -0.337600681689424 -0.403949948611045 -0.528842686345861 -0.427367336936323 -0.427367336936323 -0.411755744719471 -0.142455778978774
[+] Show/hide bicluster #23 motif PSSM #1. bicluster 23 motif PSSM #1 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0.021182 0.302347 0.00823 0.668241
2 0 0 0.470588 0.529412
3 0 0 0.647059 0.352941
4 0 0 1 0
5 0.058824 0.058824 0.882353 0
6 0 0 0.764706 0.235294
7 0 0.176471 0.823529 0
8 0.529412 0 0 0.470588 [+] Show/hide bicluster #23 motif PSSM #2. bicluster 23 motif PSSM #2 Methanococcus maripaludis S2 21x4
POSITION A C G T
1 0 0 1 0
2 0 0 1 0
3 0 0.75 0.25 0
4 0 0.75 0 0.25
5 0.75 0 0 0.25
6 0 0 0 1
7 0 0.25 0.75 0
8 0 0.5 0.25 0.25
9 0 0.5 0.25 0.25
10 0.25 0.25 0.5 0
11 0 0 0.25 0.75
12 0 0 0.5 0.5
13 0.5 0.25 0 0.25
14 0.25 0 0.75 0
15 0 0 0.25 0.75
16 0 0.5 0 0.5
17 0 0 0 1
18 0.5 0 0.5 0
19 0 0 0.75 0.25
20 0 0 1 0
21 0 0 1 0 |