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[+] Show/hide bicluster #20 rows and columns.
bicluster 20
Methanococcus maripaludis S2
21x38
[+] Show/hide bicluster #20 rows (genes).
bicluster 20 genes
Methanococcus maripaludis S2
21
[+] Show/hide bicluster #20 rows (short gene names).
bicluster 20 short names
Methanococcus maripaludis S2
21
short_name
[+] Show/hide bicluster #20 rows (long gene names).
bicluster 20 long names
Methanococcus maripaludis S2
21
long_name
[+] Show/hide bicluster #20 rows (NCBI RefSeq gene IDs).
bicluster 20 NCBI RefSeq IDs
Methanococcus maripaludis S2
42
[+] Show/hide bicluster #20 gene upstream sequences.
bicluster 20 upstream sequences
Methanococcus maripaludis S2
21
upstream
[+] Show/hide bicluster #20 columns (arrays; conditions).
bicluster 20 arrays
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #20 ratios.
bicluster 20 ratios
Methanococcus maripaludis S2
21x38
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0090m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m
MMP0044 -0.0674962808450264 -0.112493801408377 0.293160781363615 0.596679053441199 1.06342184586766 0.998015931268621 -0.32462496977846 -0.24748636309843 0.388907142011818 -0.13820667030172 -0.00964232583500377 0.0160705430583396 0.273199231991773 -0.157491321971728 -0.125350235855049 -0.163919539195064 2.04738718563246 1.95096392728243 1.43027833219222 0.376050707565147 0.131778453078385 -0.183204190865071 -0.0610680636216905 0.00964232583500377 -0.517471486478535 -0.388907142011818 -0.826025913198655 -0.755315523741961 -1.31457042217218 -0.517471486478535 -0.241058145875094 0.78745660985864 2.40736735013927 2.54878812905266 1.93810749283576 1.50098872164892 0.221773494205086 0.414620010905162
MMP0045 -0.076366734775088 0.120004868932282 -0.0155239062118147 0.407057251811813 0.651804569165918 0.52848673127179 -0.360014606796844 -0.365469373566493 0.469109942189828 -0.147278702780527 -0.152733469550176 -0.103640568623334 0.13091440247158 -0.180007303398422 -0.0981858018536846 -0.567295744043512 1.82734686783247 1.77279920013598 1.64733956443405 0.529112376655968 0.120004868932282 -0.0981858018536846 -0.0218190670785963 0.0381833673875441 -0.523657609886319 -0.0654572012357896 0.141823936010878 0.00545476676964916 -0.567295744043512 -1.79461826721457 -0.147278702780527 0.550931443734565 2.16554240755072 2.32373064387054 2.12190427339352 1.77279920013598 0.660026779127548 0.572750510813162
MMP0046 0.408151800128699 0.296963500386953 0.163960111830027 -0.0328912885003073 0.530363113327317 0.209459767836634 0.338659112790108 -0.0366013988382837 0.630528399612191 -0.293724341991071 -0.926107796772249 -0.523050210208421 -0.384064835531239 -0.391014104265098 0.0328912885003073 -0.37711556679738 1.54088260374773 1.58952748488475 1.1725713608532 0.700021086950782 0.213572275580644 0.428999606330277 0.137130319508194 0.0884854383711803 -0.0643984737737202 -0.668984853619462 -0.648137047417885 -0.891361453102954 -0.773223884627349 -1.01644829031242 -0.272876535789493 0.290014231653094 2.05512849005331 2.04817922131945 1.6659694409572 1.18646989832092 0.317811306588531 0.290014231653094
MMP0093 -0.461638645552988 -0.0419671495957262 -0.494580065262587 0.300288659539361 0.588559209340167 0.368738560825813 -1.12548264824902 0.30140043800567 0.423486691375055 0.0648583221024858 -0.0801191037736591 0.209835747978631 0.0419671495957261 -0.766854278976451 -0.957614049866115 -0.377704346361536 1.16363460242695 1.60619727089097 1.56041492587746 0.286139656334497 -0.179314184636285 -0.949983659030529 -0.759223888140864 -0.705811152291759 -1.92667368598561 0.324291610512429 0.186944575471871 -0.217466138814218 -1.17889538409813 -1.78169626010947 -0.629507243935893 0.438747473046228 2.02586876684824 2.14795502021762 1.75880508760271 0.934722877359356 -0.171683793800698 0.125901448787178
MMP0596 -0.105420683616641 0.0138668508196925 0.00402627934575764 0.432152836956922 0.618162112182216 0.452261947792089 -0.719751485963759 -0.00402627934575756 -0.0338481629548409 -0.528891430865625 -0.558713314474709 -0.475212040369275 -0.188921957722075 -0.749573369572842 0.109296878368759 0.473123858399577 0.890630228926744 1.39163787355934 1.12920529779941 0.25244191969236 0.0198312275415092 -0.230672594774791 -0.153135697391174 -0.373817636098392 -0.0994563068948243 0.0556174878724093 0.783271447934044 0.115261255090576 -0.982184061723693 -1.36390417191996 -0.427497026594741 0.50294574200866 1.45724601749933 1.84493050441741 1.71967859325926 1.44531726405569 0.66398391349771 0.425408844625043
MMP0901 -0.0444898760304347 0.519048553688405 -0.719780030311797 -0.550584483059583 -0.0433326721099451 -0.290429591882566 -0.415238842950724 0.215034400813768 0.467143698319565 0.118639669414493 -0.037074896692029 0.133469628091304 0.56353842971884 -0.548708471042028 -0.155714566106522 0.296599173536232 0.926872417300724 1.77218006187898 1.41626105363551 0.533878512365217 0.407823863612319 0.037074896692029 0.400408884273913 0.0963947313992753 -0.0593198347072463 -1.17156673546811 -0.867552582593477 -0.719252995825362 -0.785987809871014 -1.24571652885217 -0.548708471042028 0.237279338828985 1.89823471063188 2.22449380152174 2.02428935938478 1.39401611562029 0.170544524783333 -0.28176921485942
MMP1131 -0.153355951555327 -0.0645709269706641 0.0277204442330917 0.286971916955087 0.771823183026802 0.494956220645696 -0.306711903110654 0.419711025309316 0 -0.451996488794649 -0.234069610268657 -0.121070488069995 0.435853757051982 -0.484281952279981 -0.621495172092642 0.112999122198662 0.338997366595986 0.863636148232632 0.66992336732064 0.0968563904559961 0.145284585683994 -0.258283707882656 -0.0887850245846631 -0.104927756327329 -1.01699209978796 -0.411639659437983 0.121070488069995 0.104927756327329 -0.548852879250645 -0.597281074478643 -0.0645709269706641 0.581138342735977 1.33177536876995 2.07434102893258 2.01784146783325 1.71920093059393 0.99277800217396 0.710280196677305
MMP1208 0.131657215989412 0.585143182175162 0.206181358871411 0.352822614269793 0.741664134032896 0.794728011737115 -1.11177204613281 0.343771619527908 0.416914517299803 -0.124342926212222 -0.248685852424444 -0.190171534206928 0.0365714488859476 -0.768000426604901 -0.373028778636666 -0.16091437509817 1.22148639279065 1.83588673407457 1.47748653499228 0.519314574180457 0.351085909305097 -0.16091437509817 -0.0365714488859476 -0.102400056880653 -0.921600511925881 -0.680228949278626 -1.05325772791529 -0.78262900615928 -1.29462929056255 -1.58720088165013 -0.482743125294509 0.753371847050521 2.15771548427091 2.09188687627621 1.5360008532098 0.93622909148026 0.190171534206928 0.109714346657843
MMP1318 -0.281127172533924 -0.23731514564552 -0.755548071544455 0.0742431232626363 0.458474920362134 0.189314835026675 -0.865287531045973 -0.0109530067221008 -0.0912750560175077 -0.587811360752749 -0.624321383159752 -0.514791315938743 -0.200805123238517 -0.668133410048156 0.00365100224070031 0.230013141164119 1.12085768789499 1.57358196574183 1.2230857506346 0.59511336523415 0.23731514564552 -0.105879064980309 -0.0328590201663027 -0.0985770604989083 -0.310335190459526 0.142389087387312 0.755757463824964 0.244617150126921 -0.660831405566756 -1.25229376856021 0.164295100831514 1.34721982681841 2.20155435114228 2.58125858417512 2.3987084721401 1.91677617636766 1.09164966996939 0.887193544490175
MMP1443 0.131321256975332 0.320668185637439 -0.170939964009974 0.180799680035025 0.428929655882624 0.263816116754339 -0.748225766487358 0.485583252536694 0.338992081959579 -0.510015114299546 -0.461151390773841 -0.49779918341812 -0.0946734643310535 -0.369531909163144 -0.0519177062460616 -0.143537187856758 0.357315978281718 2.29354102298778 1.62166482450934 0.723793904724506 0.229048704026742 -0.125213291534619 -0.0335938099239222 -0.0213778790424959 -0.241264634908169 -0.638282388554522 -1.45674975761008 -1.38345417232152 -1.20632317454084 -0.0152699136017828 -0.167969049619611 0.809305420894489 2.3485127119542 2.49510388253131 1.98814275095212 1.37734620688081 0.235156669467455 0.0885654988903403
MMP1444 0.00784411992819054 0.154267691921081 -0.0619017312191569 0.271830848421135 0.418940796595982 0.203510122211754 -0.420967769479559 0.405279529623178 0.603997234470671 -0.0810559059246356 -0.29023243734305 -0.332067743626733 -0.0183029464991112 -0.29546185062851 -0.222250064632065 0.0392205996409527 1.68648578456097 1.82245052998293 1.19492093572769 0.572620754757909 0.185644171633843 -0.0915147324955563 -0.00784411992819054 -0.138579452064699 -0.499408968761464 -0.943909098025595 -0.938679684740134 -1.28905037486598 -1.30996802800782 -1.34134450772058 -0.185644171633843 0.541244275045147 2.1832800466797 2.44998012423818 2.11006826068325 1.68648578456097 0.671979607181656 0.384361876481336
MMP1445 0.0482040878441722 0.363668430699831 0.0102152349068757 0.291326942098961 0.430871601032675 0.42796991327163 -0.45420208781484 0.281881378848364 0.67913277355549 -0.0394248962823997 -0.343205374587849 -0.31983764548743 -0.0102152349068757 -0.781350295220708 -0.384098900513582 -0.378256968238478 1.80078377037561 1.85920309312666 1.28669373016639 0.492190940752136 0.287723311123469 -0.156263541784495 -0.115370015858762 -0.226366729085753 -0.483411749190364 -1.00918565394979 -0.606092326967564 -1.19028555447804 -1.28375647087972 -1.24870487722909 -0.115370015858762 0.527242534402765 2.40834472698651 2.62449622116538 2.2798222169342 1.90009661905239 0.8134972158829 0.538926398952975
MMP1473 -0.149454024333288 0.321900975487082 -0.64971604215691 0.0979855532777803 0.602221243203912 0.513279187427929 -0.436865609589611 -0.448362072999864 -0.137957560923035 -0.0229929268205058 -0.1954398779743 0.0229929268205058 0.229929268205058 -0.55183024369214 -0.47135499982037 -0.643801950974164 0.82774536553821 1.63249780425591 1.04617817033302 0.241425731615311 0.333397438897335 -0.712780731435681 -0.367886829128093 -0.321900975487082 -1.32209329217909 -0.563326707102393 -0.137957560923035 -0.55183024369214 -1.09216402397403 -1.37957560923035 -0.724277194845934 0.528837316871634 2.11534926748654 2.19582451135831 2.16133512112755 1.28760390194833 0.425369146179358 0.310404512076829
MMP1474 -0.355607490836926 0.0119867693540537 -0.433711481932536 0.0273188302729753 0.722893667081967 0.743461413004686 -0.67525467361169 -0.243730976865758 0.307660413420711 0.0199779489234228 -0.0599338467702684 0.0439514876315302 0.331633952128818 -0.651281134903583 -0.619316416626106 -1.1387430886351 0.299669233851342 1.02686657466393 0.715210571458536 0.13185446289459 -0.0119867693540537 -0.507439902654939 -0.115872103755852 -0.0918985650477448 -0.978919497247716 -1.28258432088374 0.155828001602698 -0.0998897446171139 -0.914990060692763 -1.22664606389816 -0.235739797296389 1.30655785959185 1.80201099289274 2.2255435100693 2.07371109825129 1.83397571117021 1.02686657466393 0.771148828444119
MMP1509 -0.466599973161107 0.163144706468319 -0.00121036027789519 0.279491673366022 0.678269988783316 0.627085537737927 -1.53716592853113 -0.430614562896568 -0.421618210330433 -0.51158173599178 -0.547567146256318 -0.223698453875471 0.442031636018493 -1.03337018482759 -0.520578088557914 0.12715929620378 0.51400245654757 2.16033497615021 1.68352829014507 0.828874796362283 0.684933155304128 0.00121036027789519 0.433035283452358 0.271100937261935 -1.20430088358415 0.0371957705424338 0.0911738859392417 -0.610541614219261 -1.06935559509213 -1.37523158234071 -0.601545261653126 0.792889386097744 1.74650275810802 2.547178136494 2.46621096339879 1.29668512980128 0.0551884756747031 -0.0257786974205088
MMP1705 -0.31128223328972 -0.11319353937808 0.125221645229909 0.717836610537101 0.567908154870368 0.618878149179284 -0.858384340283773 0.377311797926933 0.433908567615973 -0.50937092720136 -0.499938132253187 -0.471639747408667 -0.273551053497027 -0.490505337305013 0.207521488859813 -0.499938132253187 1.18853216346984 2.17897563302804 1.43378483212235 0.886682725128293 0.660295646372133 0.00943279494817334 0.122626334326253 0.245252668652507 -0.405610182771453 -0.330147823186067 -0.415042977719627 -0.707459621113 -1.2734273180034 -0.754623595853867 -0.443341362564147 0.499938132253187 2.24500519766525 2.61288420064401 2.22613960776891 1.54697837150043 0.726325211009347 0.631997261527613
MMP1706 -0.737897153058114 -0.291037442996763 -0.0121887888305826 0.142387014940435 0.259369780066381 0.729823084346146 -0.546385848746107 0.155822267064589 -0.386793095152767 -0.745876790737781 -0.857591718253119 -0.729917515378447 -0.338915269074765 -0.570324761785107 -0.0596279502864202 -0.450630196590103 0.993684223429622 1.73579052763865 1.54427922332664 0.562783788727605 0.347333571376596 -0.235179979239094 0.0121887888305827 0.123903716345921 -0.562345124105441 0.52288560032927 0.562783788727605 0.323394658337595 -0.466589471949437 -0.402752370512101 -0.450630196590103 0.28349646993926 1.52034031028764 1.87144436819299 1.73579052763865 1.34478828133497 0.68247835392261 0.395211397454598
MMP1707 -0.364359091504277 0.0628205330179786 0.301758279582581 0.49313622555706 0.850425502651564 0.973598266184535 -1.09307727451283 -0.213589812261128 -0.422991588987723 -0.850171213509979 -0.783162644957468 -0.548632655023681 -0.196837670123 -0.749658360681213 0.046068390879851 -0.163333385846745 1.05957299023657 1.92230831035015 1.49512868582789 0.490000157540234 0.188461599053936 -0.30572659402083 -0.0544444619489149 -0.0460683908798511 -0.665897649990574 0.573760868230872 0.490000157540234 0.096324817294234 -0.632393365714319 -0.397863375780532 -0.649145507852447 0.163333385846745 1.83854759965951 2.33273579273428 1.96418866569547 1.42812011727538 0.448119802194915 0.490000157540234
MMP1708 -0.0568885537330732 -0.181545451233768 -0.353748021987791 0.0817681126276453 0.0843066036900734 0.283191565386876 -0.958817870943982 -0.115550623145165 0.185092482591805 -0.174212692557257 -0.328200624763997 0.0531028264145986 0.141095930532736 -0.885490284178868 -1.12747132050375 -0.863492008149333 0.801044211418767 1.66630973524712 1.21901145597992 0.331747656122034 -0.0862195884391191 -0.650842006530501 -0.504186833000272 -0.364864418146554 -1.90474374021396 0.185092482591805 0.647056279212026 0.925701108919462 -0.540850626382829 -2.05139891374419 -0.416193728882135 0.720383865977141 2.15027180789687 1.98161835833711 1.71030628730619 0.793711452742256 0.0970993784736673 0.251087310680408
MMP1709 -0.274537502997731 0.0116680673691452 -0.91660913026679 -0.0670365616014673 0.141601783937292 -0.00393278168355406 -1.41162449877965 0.243726637936883 0.437108780076665 0.00393278168355396 -0.158508217713863 0.034873924425919 0.321079494792796 -0.986183786072128 -1.0093896431289 -0.553007787679017 0.792931921613863 1.69022506114245 1.27251963412052 0.498991065561395 -0.0966259322291324 -0.653566501591703 -0.382831502596009 -0.290008074368914 -1.76744764031684 0.52993220830376 0.638226207902037 0.344285351849569 -0.962977929015354 -1.93762392539985 -0.715448787076433 0.607285065159672 2.13113634522115 1.9996364885661 1.35760777666202 0.274667780679248 -0.297743360054505 0.174109066766562
MMP1710 -0.256984493958456 -0.0943360800606991 -0.0632335915715446 0.276171346633588 0.217318963339714 0.0296963799391352 -0.601799131421701 0.269996367070276 0.322043859517559 0.11385388972843 -0.10734795317252 0.0618063972811475 0.243972620846635 -0.439150717523944 -0.58228132175397 -0.263490430514366 0.972637515108586 1.90949237915967 1.31745215257183 0.536739765862598 0.34156166918529 -0.276502303626187 -0.0618063972811477 -0.0748182703929683 -1.22636904078909 -0.0487945241693271 -0.211442938067084 -0.139877635952071 -0.979143451664497 -1.07673250000315 -0.426138844412123 0.58228132175397 1.65576085347917 1.64925491692326 1.38251151813093 0.374091351964841 -0.191925128399353 0.100842016616609
[+] Show/hide bicluster #20 motif PSSM #1. bicluster 20 motif PSSM #1 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0.272727 0 0.727273 0
2 0 0.272727 0.727273 0
3 0.272727 0.181818 0 0.545455
4 0 0 1 0
5 1 0 0 0
6 0 0 0 1
7 0.090909 0 0 0.909091
8 0 0 0.090909 0.909091 [+] Show/hide bicluster #20 motif PSSM #2. bicluster 20 motif PSSM #2 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 0 1 0 0
4 1 0 0 0
5 1 0 0 0
6 0 0 1 0
7 0 0 0 1
8 0 0.5 0.5 0 |