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bicluster 13
Methanococcus maripaludis S2
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bicluster 13 genes
Methanococcus maripaludis S2
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[+] Show/hide bicluster #13 rows (short gene names).
bicluster 13 short names
Methanococcus maripaludis S2
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short_name
[+] Show/hide bicluster #13 rows (long gene names).
bicluster 13 long names
Methanococcus maripaludis S2
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long_name
[+] Show/hide bicluster #13 rows (NCBI RefSeq gene IDs).
bicluster 13 NCBI RefSeq IDs
Methanococcus maripaludis S2
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[+] Show/hide bicluster #13 gene upstream sequences.
bicluster 13 upstream sequences
Methanococcus maripaludis S2
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upstream
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bicluster 13 arrays
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bicluster 13 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0022 -0.275528345243659 -0.546920918182429 -0.715723858928879 -0.945965528558501 -1.34700689285255 2.48861353738283 -0.555829535350178 0.785766021620805 0.632694718707661 -0.0816380282203434 -0.183685563495773 -0.0102047535275429 0 -0.204095070550858 -0.122457042330515 -0.204095070550858 -0.122457042330515 -0.704127993400462 -0.714332746928005 -0.724537500455548 -0.520442429904689 -0.24491408466103 -0.24491408466103 -0.265323591716116 0 -0.132661795858058 0.285733098771202 2.25525052958699 1.67357957851704 1.25518468388778 1.32661795858058 0.887813556896234 0.806175528675891 0.530647183432232 0.183685563495773 0.693923239872919 0.193890317023315 0.540851936959775
MMP0023 0.0556322884854095 -0.558004800659432 -0.784241381340392 -0.804794497677211 -1.15176163082424 3.01093049487818 1.02656471593933 -0.359081134769461 0.379311057855065 -0.298391365512651 -0.338851211683858 -0.298391365512651 -0.217471673170237 -0.156781903913427 0.146666942370625 -0.551265404082694 -0.591725250253901 -0.864829211909548 -0.87494417345235 -0.723219750310324 -0.480460673283082 -0.692874865681919 -1.12781821202239 -0.0657472500282112 -0.298391365512651 -1.25931271207882 0.187126788541832 2.76644198195627 1.10758828893679 1.1885079812792 0.885059134995151 0.611955173339505 0.460230750197479 -0.17701182699903 0.217471673170237 0.895174096537953 0.328736250141056 0.814254404195539
MMP0052 -0.2391429450528 -1.20670100169991 0.00893120583859791 -0.662789986324607 -0.940388549403531 1.97449532766312 1.37821282545102 -0.00893120583859754 -1.41651155417687 -0.57459433647921 -0.357537553791533 -0.153635727630382 -0.114170858050804 0.0897309681103467 0.359407576904128 -0.166790684156908 -0.515397032109844 0.102885924636873 -0.225987988526274 0.0305336637409801 0.405449924746968 0.260745402955183 0.188393142059291 0.65539409875096 0.65539409875096 -0.337805119001745 0.905338272754952 1.55650862081798 1.86565009919134 1.86565009919134 1.41838157728946 1.1092400989161 1.27367705549768 0.793521142279481 0.0305336637409801 -0.804806075693413 -0.245720423316063 0.648816620487697
MMP0154 -0.324980931335152 -0.649611354251318 -0.895034560982391 -0.818047388446488 -1.17462703525249 3.85109015345653 3.41837402115602 -0.0989072399715677 0.00470986857007467 -0.0329690799905227 0.07064802855112 0.00470986857007467 0.155425662812464 0.230783559933659 0.259042771354106 0.268462508494256 0.127166451392016 0.0518085542708213 -0.428598039876794 -0.0235493428503733 -0.014129605710224 -0.240203297073808 -0.654671731240378 -0.21194408565336 -0.183684874232912 -0.230783559933658 -0.0235493428503733 1.98285466800143 1.66258360523636 0.720609891221423 0.522795411278288 0.598153308399482 0.805387525482767 0.475696725577541 -0.296721719914704 -0.0235493428503733 -0.127166451392016 -0.146005925672314
MMP0226 0.322539729700619 -0.300546572609321 0.0424566933646404 0.00105652309636755 -1.78851760312682 2.01580263751841 0.643976898514905 -0.0757325814341338 -0.0508405619882117 -0.200192678663744 -0.374436814785198 -0.349544795339276 -0.262422727278549 -0.125516620325978 -0.162854649494861 0.57145992415984 0.671028001943528 0.683474011666489 0.671028001943528 0.633689972774645 0.758150070004255 0.422107807484307 0.21052564219397 0.807934108896099 0.870164157510904 0.110957564410282 1.48001863393599 1.95296700340851 1.64181676033449 0.770596079727216 1.33066651726046 1.35555853670638 1.18131440058493 0.434553817207268 -0.0508405619882117 -0.586018980075536 -0.747817106474029 -0.561126960629614
MMP0336 0.166497438996876 -1.27764872177863 -0.237464712761193 -1.31738729585575 -3.04887929174628 -0.266642128321929 0.905108775409895 0.475706968562502 0.249746158495314 -0.475706968562502 -0.237853484281251 0 -0.166497438996876 -0.202175461639063 -0.118926742140625 -0.130819416354688 0.368672900635939 0.130819416354688 -0.737345801271878 -0.808701846556254 -0.582741036489065 -0.297316855351564 -0.237853484281251 -0.499492316990627 -0.0832487194984378 0.261638832709376 0.523277665418753 2.16446670695938 2.0336472906047 1.01087730819532 0.915735914482817 0.832487194984379 0.97519928555313 0.963306611339067 0.273531506923439 0 0.309209529565626 0.261638832709376
MMP0337 -0.134186630768208 -0.641769243972044 -0.0974573904786918 -0.479687516204287 -1.44325751342837 0.542117454791523 1.56829846427885 0.581475399995569 -0.391377673073941 -0.134186630768208 -0.100639973076156 -0.0335466576920521 0.346648796151204 0.234826603844364 0.0559110961534201 0.626204276918305 0.0335466576920521 -0.290737699997784 -0.738026469225145 -0.760390907686513 -0.704479811533093 -0.089457753845472 -0.536746523072833 -0.480835426919413 -0.22364438461368 0.0894577538454722 1.28595521152866 2.22526162690612 2.18053274998338 1.54314625383439 2.29235494229022 2.09107499613791 1.78915507690944 1.35304852691277 0.693297592302409 -0.134186630768208 0.156551069229576 0.201279946152312
MMP0420 0.0491685024675125 -0.63863621867297 -0.253620158147633 -0.0952473791612227 -1.13725144543389 4.19062337708744 -0.796638967801935 0.172089758636294 -0.872740918798348 -0.479392899058247 -0.258134637954441 -0.0491685024675126 0.0491685024675125 0.319595266038832 0.344179517272588 0.110629130551903 0.233550386720685 0.356471642889466 0.184381884253172 0.19667400987005 0.503977150292004 0.245842512337563 0.270426763571319 0.356471642889466 0.590022029610151 -0.086044879318147 -0.0614606280843907 1.05712280305152 1.47505507402538 0.553145652759516 0.946493672499616 0.749819662629566 0.749819662629566 0.835864541947713 -0.491685024675125 -0.934201546882738 -0.602314155227029 -0.110629130551903
MMP0421 -0.315481283004893 -0.513513846493347 0.209701734904169 -0.283977814020941 -0.650655998511592 3.3853795238315 3.16292594991402 0.283398440665413 -0.6363097063997 -0.112289948188182 -0.0160414211697404 0.0267357019495673 0.29409272144524 0.315481283004893 0.229927036766278 0.999915252913815 0.796723918097104 -0.0909013866285286 0.0267357019495673 -0.122984228968009 0.122984228968009 -0.101595667408356 -0.197844194426798 0.29409272144524 0.561449740940912 0.892972445115546 -0.197844194426798 1.01060953369364 1.88754055763945 0.657698267959354 1.17102374539105 0.721863952638316 1.41699220332706 1.87684627685962 -0.0160414211697404 -0.507978337041778 -0.368952686904028 -0.262009879105759
MMP0422 -0.053521966830773 0.143775751746196 0.289989589647435 0.420695892596175 -0.422148318210062 4.05932588620754 2.37565141592395 -0.374653767815411 -0.802829502461596 -0.0669024585384663 -0.133804917076933 -0.307751309276945 -0.147185408784626 -0.0401414751230798 0.0133804917076933 0.816209994169289 -0.414795242938491 0.428175734646184 -0.0669024585384663 -0.0267609834153865 0.280990325861558 -0.388034259523104 -0.454936718061571 0.0802829502461596 0.227468359030785 0.267609834153865 -0.816209994169289 1.13734179515393 2.14087867323092 0.0936634419538529 0.628883110261583 0.240848850738479 0.267609834153865 0.120424425369239 0.240848850738479 -0.0401414751230798 0.347892784400025 -0.240848850738479
MMP0449 -0.713116812917254 -0.213410678230861 1.48294544957983 -0.26299467464425 -1.10557266709847 -0.156709915547412 1.75139905668077 0.023253809116867 0.0542588879393563 -0.480578721748584 -0.426319833809228 -0.193781742640558 -0.418568564103606 -0.550340149099185 -0.581345227921674 -0.751873161445366 0.124020315289957 -0.875893476735323 -0.550340149099185 -0.503832530865451 -0.395314754986739 -0.170527933523691 0.294548248813648 0.0155025394112447 0.046507618233734 0.0930152364674679 0.643355385566653 0.0387563485281116 -0.0155025394112446 0.046507618233734 0.674360464389142 0.736370622034121 0.736370622034121 1.67427425641442 -0.10076650617309 0.348807136753005 -0.0697614273506009 1.43398489554013
MMP0633 -0.456540221036163 -0.688511997263835 0.673522943921636 0.304476797859801 -0.0896305381901187 2.28835247692942 3.32030737200598 0.413571729644524 -0.295408378317517 0.0913080442072325 0.193358211262375 0.392087483948704 0.483395528155937 0.413571729644524 0.150389719870736 0.36523217682893 -0.424313852492433 -0.316892624013336 -1.32665217171685 -1.57909205864273 -0.843256643560912 -0.880854073528596 -0.821772397865093 -0.19872927268633 0.00537106142395486 -0.00537106142395478 0.467282343884072 0.515621896699666 1.22460200466171 0.853998766408822 1.22997306608566 0.999017424855603 1.10106759191075 0.440427036764298 0.703609046538086 -0.0805659213593228 0.18798714983842 -0.225584579806104
MMP0686 0.100869014760002 -0.0193204831951321 -0.682246513414649 -0.571356091352738 -0.505688710728728 3.45460678097777 2.63380285990685 -0.273744552116117 -0.166712104437226 -0.615229028044009 -0.556616020981759 -0.691680776386074 -0.416454482354639 -0.329809167566965 -0.365486650126596 0.681902302159697 0.414321182962469 0.376095308791436 0.105965797982806 0.100869014760002 0.190062721159078 0.223191812107306 0.0779334902573821 0.103417406371404 0.0193204831951321 0.472934190024719 0.498418106138741 3.16913251488822 0.737966917610545 0.539192371921175 0.870483281403458 0.771096008558773 0.57996663770361 0.220643420495904 -0.199841195385455 -0.189647628939846 -0.146324971546009 -0.47506748941689
MMP0687 0.254778419534807 0.816107894821505 -0.0129273508495213 -0.109755984735632 -0.0129273508495213 -0.399363076006733 1.95536226768988 -0.35032032686036 -0.0902340235852443 -0.429938582964987 -0.329088791899126 -0.270702070755733 -0.329088791899126 -0.207007465872031 -0.249470535794499 0.493633187848689 0.148620744728637 0.451170117926221 -0.323780908158817 -0.307857256937892 0 0.0159236512209254 -0.254778419534807 -0.159236512209254 -0.222931117092956 0.233546884573573 -0.360936094340977 3.48197173364236 0.83864563096874 0.891724468371825 1.20488960905003 1.04565309684077 0.897032352112133 0.307857256937892 -0.238854768313882 0.212315349612339 0.212315349612339 0
MMP0709 -0.0596576480946129 -1.44627321129714 -0.577968059895251 -0.837359633125925 -1.24064561761934 1.96296939154122 3.92585984109959 -0.544376038863343 -0.41760353666229 -0.0223716180354798 0.268459416425758 0.559290450886996 0.768092219218141 0.887407515407367 0.820292661300927 -0.0820292661300927 -0.46234677273325 0.395231918626811 -0.320659858508544 -0.365403094579504 0.156601326248359 0.201344562319319 0.0447432360709597 0.835207073324581 0.753177807194488 -0.842664279336407 0.283373828449411 0.559290450886996 0.171515738272012 1.11858090177399 1.21552457992774 1.15586693183313 1.33483987611696 0.872493103383714 -0.119315296189226 -0.096943678153746 -0.559290450886996 0.275916622437585
MMP1016 0.337022522399006 -0.979105661975188 0.260056448023495 -0.120676252008064 -0.467303173411754 0.866750699692808 1.89273013099657 -0.116165209848168 -1.19176900473861 -0.600903986745462 -0.293998370603388 -0.0731410580525503 -0.00430241517956178 0.101823825916295 0.13624314735279 -0.0645362276934268 -0.411597718844744 -0.0301169062569325 -0.583694326027215 -0.520592236726975 -0.121901763420917 -0.0846141651980483 0.00430241517956178 0.34562735275813 0.242369388448647 -0.339890799185381 0.933624093964906 1.23192487974786 2.1956658799697 2.49970321932539 2.34481627286117 1.92891613883686 1.7453464245089 1.15448140651574 0.311208031321635 0.0243803526841834 0.322681138467133 0.546406727804346
MMP1058 -0.897535715886054 0.0171051268811484 -0.123855114737072 -0.162199581195052 -0.425834805008197 2.01702123481612 2.27656275289902 0.398904762616024 -0.217584415972377 -0.253848485301106 0.117858225318371 0.625555195920583 0.698083334578042 0.634621213252766 0.68901731724586 -0.108792207986188 0.163188311979283 -0.253848485301106 -0.725281386574589 -0.634621213252766 -0.543961039930942 0.00906601733218237 0.0634621213252766 0.598357143924036 0.661819265249313 -0.453300866609118 1.50495887714227 1.11512013185843 0.779677490567683 0.979129871875696 1.70441125845028 2.02172186507667 2.04891991707321 2.41156061036051 -0.580225109259671 -1.50495887714227 -1.61375108512846 -0.00906601733218234
MMP1358 -0.0197001348655132 -0.0241192986687474 -0.395654563468804 -0.592838089121105 -0.290687704024263 1.84571422480873 1.0448229621226 -1.41840971031695 -0.719054922591231 0.0197001348655132 -0.0492503371637829 -0.206851416087888 0.0197001348655132 0.0197001348655132 0.226551550953402 -0.40385276474302 -1.46766004748073 -0.0689504720292961 -0.265951820684428 -0.157601078924105 -0.246251685818915 -0.709204855158474 -0.827405664351553 -0.236401618386158 -0.0689504720292961 -0.709204855158474 -0.650104450561935 0.177301213789619 2.06851416087888 0.955456540977389 0.453103101906803 -0.0394002697310264 0.206851416087888 0.147751011491349 0.0689504720292961 0.689504720292961 -1.96016341911856 0.40385276474302
MMP1397 0.0345620146621709 -1.45524378167061 -0.550182149255417 -0.925045589752546 -1.64595282422231 2.01539029800119 0.394415448687637 0.24884650556763 -0.214284490905459 -0.449306190608221 -0.338707743689274 -0.0967736410540782 0.0552992234594734 0.0276496117297367 0.0552992234594734 0.152072864513552 0.0622116263919075 -0.172810073310854 -0.705065099108285 -0.559904637527167 -0.338707743689274 -0.145160461581117 -0.324882937824406 -0.131335655716249 -0.0760364322567757 0.158985267445986 0.0207372087973025 1.46542942167604 3.11058131959537 1.51381624220308 1.17510849851381 0.988473619338086 1.14054648385164 0.8294883518921 0.0622116263919075 -0.214284490905459 -0.235021699702762 0.138248058648683
MMP1533 0.175145143053137 -1.1037778274066 0.677412674328337 0.353160428486629 -0.185648967032891 1.77421711732485 0.302047500290003 -0.486514286258714 -0.642198857861503 -0.0778422858013943 0.0875725715265685 0.223796571679009 0.457323429083191 0.74923200083842 0.836804572364989 0.0778422858013943 -0.214066285953834 -0.778422858013943 -1.20655542992161 -0.788153143739117 -0.389211429006971 -0.145954285877614 -0.389211429006971 0.165414857327963 0.54489600060976 -0.720041143662897 0.515705143434237 0.875725715265686 1.00221942969295 1.47900343022649 1.90713600213416 1.65414857327963 1.72226057335585 0.827074286639814 -0.145954285877614 -0.398941714732146 -0.184875428778311 0.467053714808366
MMP1534 0.308177522455753 -1.19989016259831 0.787767093117058 0.429235708058284 -0.237076049270244 2.74177224561395 -1.46819751417848 -0.296092129418272 -0.755337064842531 -0.0543842686686622 0.368604487643155 0.47737302498048 0.960788746479699 0.924532567367258 1.17832582115435 -0.187323592080948 -0.441116845868038 -0.47737302498048 -1.04538649774206 -1.40794828886648 -0.997044925592141 -0.175238199043467 -0.380689880680636 0.368604487643155 0.598226955355285 -0.71908088573009 -0.23566516423087 1.98804715466554 0.984959532554661 1.35960671671656 0.948703353442219 1.0816426768545 1.52880221924128 0.586141562317804 0.00604269651874025 0.259835950305831 0.441116845868038 0.864105602179856
MMP1606 -0.28779013641263 -1.71871673183549 -0.956432494095603 -1.34574162038452 -1.92799069215892 2.50692069228133 3.35574814859523 0.497637110880173 0.0839387897870171 -0.0659519062612278 0.0779431619450873 0.185864463099824 0.149890696048245 0.131903812522455 0.149890696048245 0.161881951732104 -0.0239825113677192 -0.185864463099824 -0.389715809725437 -0.245820741519122 -0.239825113677192 0.0359737670515787 -0.263807625044911 0.0119912556838596 -0.0419693948935086 0.0479650227354383 0.2817945085707 0.467658971670524 1.1271780342828 1.04323924449578 1.01925673312807 1.00726547744421 1.0672217558635 0.58757152850912 -0.191860090941754 -0.257811997202981 -0.359737670515788 -0.0119912556838596
MMP1613 0.291492975428865 -0.91760965706846 0.347471568814044 0.304283040440644 -0.184364351578175 2.31577179137244 2.10270837137024 0.801605682429379 -0.819823993393683 0.391693685732537 0.245947198018105 -0.0455457774107602 0.00910915548215204 0.218619731571649 0.409911996696841 -0.0182183109643041 -0.983788792072419 -0.655859194714946 0.227728887053801 0.0819823993393682 0.409911996696841 -0.13663733223228 -0.683186661161402 -0.00910915548215204 -0.300602130911017 -0.983788792072419 1.18419021267976 0.0819823993393682 1.39370078876926 1.96757758414484 1.41191909973356 1.53944727648369 1.53944727648369 1.35726416684065 0.200401420607345 -1.3299367003942 -0.992897947554571 -0.0182183109643041
MMP1635 0.294519998136056 -0.918269202368057 1.10424767740616 0.511904685169171 0.0386607565953257 1.19714297613558 3.48869173998316 -0.56286044088224 -0.863925327865764 -0.654488884746791 -0.641399107051855 -0.0916284438645506 0.0981733327120187 0.189801776576569 0.183256887729101 0.117807999254422 -0.798476439391085 -0.0261795553898716 -0.43850755278035 -0.805021328238553 -0.143987554644294 -0.15707733233923 -0.235615998508845 0.549770663187304 0.451597330475286 -0.268340442746184 1.01445777135753 0.903194660950571 0.431962663932882 0.857380439018296 1.26316354756131 1.69512621149419 1.9176524323081 1.4071511022056 0.418872886237946 -0.170167110034166 0.366513775458203 -0.0785386661696148
MMP1637 -0.245786257912937 -0.786639787629302 1.16251706411996 0.479465697640637 0.00684713281338926 0.948487867312558 3.01378187339502 -0.00684713281338926 -0.974259200289606 -0.758631209346112 -0.770286776424138 -0.362341928693204 -0.105919452976616 0.0106362178036508 -0.12923058713267 0.465203333846692 -0.170025071905763 0.505997818619786 0.0689140531937843 -0.0767805352815495 0.558447870470906 0.482686684463733 0.488514468002746 1.01884277005296 0.954737151123814 0.0514307025767443 0.61672570586104 0.476858900924719 0.383614364300505 0.307853178293332 0.913942666350721 1.21698741037941 1.49089323671304 0.983876068818881 0.185469723974051 -0.478897599473471 0.319508745371359 -0.25161404145195
[+] Show/hide bicluster #13 motif PSSM #1. bicluster 13 motif PSSM #1 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0 0.444444 0 0.555556
2 0 0.888889 0 0.111111
3 0.333333 0 0.666667 0
4 0.222222 0.777778 0 0
5 0.333333 0.111111 0.555556 0
6 0 0 1 0
7 0 0.111111 0.777778 0.111111
8 0.333333 0 0.333333 0.333333
9 0.444444 0 0.444444 0.111111
10 0 0.888889 0.111111 0
11 0.111111 0 0 0.888889 [+] Show/hide bicluster #13 motif PSSM #2. bicluster 13 motif PSSM #2 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0 0 1 0
2 0 0 1 0
3 0.5 0 0 0.5
4 0 0 0.5 0.5
5 0 1 0 0
6 0 0 0 1
7 0 0 0.5 0.5
8 0 0 1 0
9 0 0 1 0
10 0 0 1 0
11 0 0 1 0 |