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bicluster 12
Methanococcus maripaludis S2
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bicluster 12 genes
Methanococcus maripaludis S2
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bicluster 12 short names
Methanococcus maripaludis S2
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short_name
[+] Show/hide bicluster #12 rows (long gene names).
bicluster 12 long names
Methanococcus maripaludis S2
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long_name
[+] Show/hide bicluster #12 rows (NCBI RefSeq gene IDs).
bicluster 12 NCBI RefSeq IDs
Methanococcus maripaludis S2
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[+] Show/hide bicluster #12 gene upstream sequences.
bicluster 12 upstream sequences
Methanococcus maripaludis S2
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upstream
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bicluster 12 arrays
Methanococcus maripaludis S2
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bicluster 12 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0002 -0.83650367997492 -0.746418668285313 0.249771479372263 3.69631252711072 -0.109388942765951 0.205908598147673 0.28312432245305 -0.115823586458066 0.0836503679974921 0.0450425058448034 0.13512751753441 0.14799680491864 -0.0193039310763443 0.373209334142657 0.43112112737169 0.411817196295345 -0.398947908911116 -0.456859702140148 -0.727114737208969 -0.341036115682083 -0.186604667071328 0.0643464369211477 -0.212343241839787 0.495467564292837 1.12606264612008 0.842938323667035 -0.160866092302869 -0.0707810806132623 -0.456859702140148 -0.341036115682083 -0.28312432245305 -0.205908598147673 0.0193039310763443 -0.0707810806132623 0.0257385747684591
MMP0007 -0.38524220497146 -0.177333713399561 0.837297271298901 5.97897812427846 -0.580920785274423 0.189563624668496 0.116184157054885 0.495311406391877 0.0550346007102085 -0.0428046894412733 0.189563624668496 0.324092648626784 0.458621672585071 -0.12841406832382 0.0917243345170142 -0.373012293702524 -0.0428046894412733 -0.12841406832382 -0.911128389535675 -0.373012293702524 -0.0917243345170142 -0.556460962736553 -0.654300252888035 1.49816413044457 1.57154359805818 -0.752139543039516 -0.593150696543358 -0.421931938778265 0.287402914819978 -0.0672645119791437 0.226253358475302 -0.103954245785949 -0.201793535937431 -0.177333713399561 -0.15287389086169
MMP0078 -1.05862926234252 -1.19707103839698 0.966716755530063 5.15314357268502 0.932802439363919 0.251242926480432 -0.174731769071747 -0.249277340793379 0.261892293869237 0.29384039603565 0.166047987369996 0.166047987369996 0.176697354758801 0.325788498202064 0.112801150425974 0.0808530482595606 -0.32382291251501 -0.515511525513491 -0.196030503849356 -0.355771014681423 -0.164082401682943 0.134099885203583 -0.270576075570988 -0.515511525513491 -0.377069749459032 0.0382555787043426 -0.259926708182183 -0.32382291251501 0.155398619981192 0.379035335146086 0.4109834373125 0.50682774381174 0.29384039603565 0.19799608953641 -0.387719116847837
MMP0079 -0.762747415319885 -0.584587435099182 1.77820637792877 5.37185194179272 -1.94305728428204 0.785017412847473 0.12805248578363 0.0835124907284546 -0.462102448697448 -0.851827405430236 -0.450967449933655 -0.250537472185364 -0.272807469712952 -0.0835124907284546 0.150322483311218 0.584587435099182 -0.384157457350891 -0.116917487019836 -0.807287410375061 -0.417562453642273 -0.428697452406067 -1.27495735845441 -0.629127430154358 -0.484372446225036 -0.339617462295715 0.0278374969094849 -0.450967449933655 -1.0967973782337 0.406427454878479 0.150322483311218 0.283942468476746 0.0501074944370728 0.773882414083679 0.573452436335388 -0.896367400485412
MMP0214 -0.126766116112193 -0.153453719504233 1.13256592405389 3.58306635590293 0.927394217873409 0.860675209393308 -1.50117769080228 0.180141322896274 0.0333595042400507 0.246860331376375 0.233516529680355 0.113422314416172 0.260204133072395 1.10086363992167 0.647174382256983 0.193485124592294 0.0600471076320912 -0.0600471076320912 -0.340266943248517 -0.0200157025440304 0.433673555120659 0.900706614481368 0.00667190084801013 1.54120909589034 1.06083223483361 -0.113422314416172 -0.113422314416172 -0.300235538160456 -0.700549589041064 -0.406985951728618 -0.260204133072395 0.00667190084801013 0.0200157025440304 0.046703305936071 -0.313579339856476
MMP0289 -0.665627298718945 0.238812847631988 0.356976397928665 5.91696647801066 -0.401408828998448 -0.238812847631988 -0.29978634064441 -0.320110838315218 -0.21848834996118 -0.106703612771739 0.0254056220885094 0.309948589479814 0.655465049883541 0.492869068517081 0.0558923685947206 0.0152433732531056 -0.0660546174301243 -0.0355678709239131 -0.442057824340063 0.106703612771739 -0.188001603454969 0.106703612771739 -0.330273087150622 0.848547777756212 1.67168993342392 0.685951796389753 -0.147352608113354 0.198163852290373 -0.492869068517081 -0.279461842973603 0.0152433732531056 -0.0152433732531056 0.0863791151009318 0.228650598796584 0.0762168662655281
MMP0427 0.931208719074893 1.28041198872798 -0.200981194783112 4.52682042491465 -0.15132141684967 0.663486212340861 -0.407403814595266 -0.45396425054901 -0.0582005449421808 -0.337563160664649 -0.232802179768723 0.15132141684967 0 0 -0.779887302225223 -1.12909057187831 -1.33861253367016 -1.24549166176267 -1.68781580332324 -1.17565100783205 -0.931208719074892 -0.279362615722468 -0.488884577514319 0.849727956155839 1.12909057187831 0.45396425054901 -0.512164795491191 0.0465604359537447 -0.244442288757159 -0.291002724710904 0.0814807629190532 0.291002724710904 0.977769155028637 1.03596969997082 0.15132141684967
MMP0602 -0.424070200082492 -0.181744371463925 -0.145705085726188 4.32440390375996 0.510615138874837 0.45868817559943 0.164435383705456 0.164435383705456 0.00865449387923453 0.0259634816377036 0.0605814571546417 0.510615138874837 0.649087040942589 1.01257578387044 -0.147126395946987 0.354834249048615 -0.0086544938792345 -0.510615138874837 -0.770249955251873 -0.216362346980863 -0.250980322497801 1.27221060024748 -0.943339832836563 -1.08181173490432 -1.37606452679829 0.199053359222394 -1.01257578387044 -0.372143236807084 0.649087040942589 0.752940967493404 0.787558943010342 0.527924126633306 0.164435383705456 -0.0259634816377036 -0.510615138874837
MMP0605 -0.0588682629349555 0.31511834865182 0.0855374144234802 3.85846659929018 -0.564442756376337 0.301266992667125 0.391300806567645 0.439780552514079 -0.0657939409273031 -0.176604788804866 -0.0657939409273031 0.162753432820171 0.273564280697734 0.211233178766605 0.141976398843128 0.938429367963113 0.176604788804866 0.0380912289579124 -0.31511834865182 -0.0311655509655647 -0.176604788804866 0.169679110812519 -0.896875300009027 -0.176604788804866 -0.2250845347513 0.024239872973217 -0.910726655993722 -0.377449450582949 1.20160513167233 0.626773858307466 0.204307500774257 -0.128125042858432 -0.128125042858432 -0.356672416605906 -0.349746738613559
MMP0787 -0.0162694480865042 -0.775510358790031 0.0288710901037893 4.04130487357069 1.17682341159047 0.547738085578973 -0.0379620455351764 -0.580276981751981 -0.363351007265259 0.157271331502873 -0.439275098335612 -0.439275098335612 -0.482660293232956 0.309119513643579 0.341658409816587 -0.493506591957292 -0.211502825124554 -0.699586267719678 -0.688739968995342 -0.374197305989595 -0.47181399450862 0.72127886516835 -0.330812111092251 0.178963928951546 0.135578734054201 0.894819644757728 -0.374197305989595 -0.157271331502873 0.330812111092251 0.493506591957292 0.41758250088694 0.601969579200653 0.406736202162604 0.569430683027645 -0.319965812367915
MMP0808 -0.621748234606036 -0.571336215583925 -0.181689697295492 4.45076726126072 -0.0924220348738702 0.0168040063407037 0.184844069747741 0.184844069747741 0.117628044384926 -0.0168040063407036 0.176442066577389 0.201648076088444 0.378090142665833 0.142834053895981 -0.0672160253628147 -0.0672160253628147 -0.218452082429148 -0.420100158517592 -0.63855224094674 -0.537728202902518 -0.63855224094674 -0.0672160253628147 -0.520924196561814 0.579738218754277 1.21829045970102 0.478914180710055 -0.520924196561814 -0.487316183880407 0.436904164858296 0.403296152176889 0.100824038044222 -0.210050079258796 -0.403296152176888 -0.470512177539703 -0.445306168028648
MMP0809 -0.364139813191759 -0.308827436504403 -0.104898539578153 4.33389643994648 -0.0138280941718389 -0.0414842825155168 0.447108378222792 0.456327107670685 0.290389977608618 0.188983953681799 0.502420754910148 0.843513744482175 0.86195120337796 -0.00460936472394631 -0.253515059817047 0.308827436504403 0.00460936472394631 -0.382577272087544 -1.08320071012738 -0.603826778836967 -0.686795343868 -0.216640142025477 -0.354921083743866 0.391796001535436 1.65476193589673 0.327264895400188 -0.354921083743866 -0.539295672701718 0.465545837118577 0.391796001535436 0.106015388650765 -0.318046165952295 -0.493202025462255 -0.345702354295973 -0.437889648774899
MMP0812 -0.0122395389806217 -0.335535402305698 -0.298277936237528 3.20991512504725 0.208962893820746 0.413149754868163 -0.131348541258281 -0.386582117567552 -0.301504258797795 -0.199410828274087 -0.386582117567552 -0.233441971781989 -0.386582117567552 -0.386582117567552 1.02571033801041 0.37911861136026 0.157916178558892 0.532258757145822 0.0558227480351838 0.923616907486703 -0.250457543535941 -0.0803018259964271 0.532258757145822 0.2600096090826 1.40005291659734 0.00477603277332963 0.430165326622114 -0.0122395389806217 0.0728383197891351 0.345087467852357 0.447180898376065 0.63435218766953 -0.0122395389806217 0.123885035050989 -0.029255110734573
MMP0902 -0.106868734868432 0.120658249045004 -0.17104714022051 4.81686342584414 -0.31371144751701 0.0448159210738585 0.12755300613329 0.196500577016149 0.382659018399869 0.368869504223297 0.610186002313304 0.734291629902451 0.596396488136733 -0.00344737854414296 0.451606589282728 0.12755300613329 -0.341290475870153 -0.265448147899008 -0.65155454484302 -0.258553390810722 -0.375764261311583 -0.120658249045004 -0.658449301931306 0.796344443697024 1.18934559772932 1.67197859390934 -0.534343674342159 -0.237869119545864 -0.0103421356324289 -0.375764261311583 -0.424027560929584 -0.486080374724157 -0.182711062839577 -0.486080374724157 0.0310264068972867
MMP1026 -0.562047040563381 -0.688220865995977 0.772662664255698 4.19157016222539 -0.722631909295775 -0.149114520965795 0.206466259798793 0.607928431629779 0.0229406955331992 -0.194995912032193 0.0802924343661973 0.550576692796781 0.952038864627768 -0.229406955331992 -0.389991824064387 -1.02086095122737 -0.470284258430584 -0.699691213762576 -1.05527199452716 -0.722631909295775 -0.768513300362174 -0.906157473561369 -1.20438651549296 0.28675869416499 0.58498773609658 -0.378521476297787 -1.14703477665996 -0.57351738832998 2.12201433682093 1.57143764402415 1.16997547219316 0.470284258430584 0.217936607565393 -0.0229406955331992 -0.504695301730383
MMP1049 -0.253862654434248 -0.940785131138685 0.698441643980363 3.2268288770858 -0.104531681237631 1.04531681237632 0.80638725526173 0 0.238929557114587 -0.119464778557293 0.164264070516278 0.582390795466805 0.149330973196617 0.552524600827481 0.701855574024098 0.821320352581391 -0.373327432991541 0.164264070516278 -0.910918936499361 0 -0.26879575175391 -0.671989379384775 0.642123184745451 1.0901161043353 -0.0597323892786465 0.62719008742579 0.746654865983083 -0.0597323892786465 -0.507725308868496 -0.866119644540376 -0.418126724950526 0.0746654865983084 0.597323892786466 -0.0149330973196617 0.194130265155602
MMP1051 -0.00385749008447952 0.651915824277038 -0.00618874107209413 5.00714733606757 -0.181302033970537 -0.135012152956783 0.0347174107603157 -0.513046181235776 -0.374176538194513 -0.297026736504923 -0.212161954646373 0.0501473710982338 -0.0192874504223976 0.428181399377226 0.374176538194513 0.0732923116051109 -0.297026736504923 -0.466756300222021 -0.567051042418489 -0.297026736504923 -0.165872073632619 0.0655773314361518 -0.63648586393912 0.651915824277038 0.945085070697481 0.173587053801578 -0.574766022587448 -0.0810072917740697 0.273881795998046 0.343316617518677 0.335601637349718 0.212161954646373 0.189017014139496 -0.0578623512671928 0.0655773314361518
MMP1052 0.114601127260146 0.132937307621769 -0.49119795165732 3.45541636092966 0.371307652322872 0.0137521352712175 -0.0595925861752758 -0.371307652322872 0.169609668345016 0.41714810322693 0.41714810322693 0.334635291599625 0.334635291599625 0.0229202254520292 -0.63718226756641 -0.69219080865128 -0.0687606763560873 -0.169609668345016 -0.618846087204787 0.00458404509040583 -0.00458404509040583 -0.25212247997232 -0.41714810322693 0.52716518539667 0.69219080865128 1.18726767841511 -0.389643832684495 -0.0595925861752758 -0.0687606763560873 0.114601127260146 0.142105397802581 0.187945848706639 -0.077928766536899 -0.30713102105719 0.0137521352712175
MMP1197 0.331687473820535 -0.00676913211878644 1.85446564088564 3.29064493339042 0.0744604533066509 -0.0879987175442236 -0.331687473820535 -0.900294571798596 -0.426455323483546 -0.196304831444807 -0.20984309568238 0.196304831444807 -0.277534416870244 1.1981363850252 -0.859679779085878 -0.182766567207234 -0.967985892986461 -1.13044506383733 -1.41474861282637 -0.819064986373159 -0.710758872472576 -0.223381359919952 0.00676913211878644 -0.0473839248315051 -0.575376230096847 1.56366951943967 0.0203073963563593 -0.3993787950084 0.521223173146556 0.791988457898013 0.954447628748888 0.656605815522284 0.345225738058108 0.345225738058108 -0.0879987175442236
MMP1198 0.0801986327444123 -0.236894490029418 1.12485997361826 2.62185564504499 0.674748237945345 0.0207436722243193 -0.157621209335961 -0.712534174190165 -0.355804411069605 -0.454896011936427 -0.444986851849745 -0.355804411069605 -0.33598609089624 0.238745194131328 0.179290233611235 0.119835273091141 -0.573805932976614 -1.26744713904437 -1.25753797895769 -1.08908225748409 -0.890899055750444 0.536019996731794 -0.484623492196474 0.0603803125710479 1.06120548132595 -0.365713571156287 -0.474714332109791 -0.0486204483824563 0.991841360719176 1.17020624227946 1.20984288262618 0.932386400199083 0.555838316905159 0.615293277425252 -0.127893729075914
MMP1217 0.00489409080293193 -0.00489409080293193 0.989649038025994 5.25697018364152 -0.10277590686157 0.122352270073298 -0.347480447008166 -0.631337713578218 -0.562820442337171 -0.474726807884397 -0.464938626278533 -0.00489409080293193 0.35726862861403 0.778160437666175 0.171293178102617 0.269174994161256 -0.40620953664335 -0.455150444672669 -1.15989952029487 -0.425785899855077 -0.61176135036649 0.562820442337171 -1.03265315941864 0.944559524965861 2.09956495445779 0.278963175767119 -0.99350043299518 -0.415997718249213 0.396421355037486 0.543244079125443 0.562820442337171 0.396421355037486 0.464938626278532 0.386633173431622 -0.474726807884397
MMP1218 0.00414250626128305 0.078707618964378 0.924787347990367 5.79663978194988 -0.559238345273212 0.302402957073663 -0.318972982118795 -0.54266832022808 -0.451533182479852 -0.534383307705514 -0.236122856893134 -0.09527764400951 0.194697794280303 1.2468943846462 0.608948420408609 0.227837844370568 -0.178127769235171 -0.260977894460832 -0.700083558156836 -0.186412781757737 -0.335543007163927 0.840928771040459 -0.559238345273212 1.15575924689797 1.25517939716876 0.410108119867022 -0.526098295182947 -0.575808370318344 -0.0372825563515475 -0.0621375939192456 0.0704226064418119 -0.0289975438289814 0.343828019686493 0.318972982118795 -0.54266832022808
MMP1259 -0.197272139065363 -0.59181641719609 1.4430251245972 4.41619032767686 -0.577725550119993 0.133863237222925 -0.0986360695326817 -1.97272139065363 -0.472044047049262 -0.634089018424382 -0.464998613511214 -0.345226243364386 0.0563634683043895 0.380453411054629 -0.225453873217558 0.183181271989266 -0.190226705527315 -0.317044509212191 -0.75386138857121 -0.612952717810236 -0.718634220880967 0.154999537837071 -0.436816879359019 -0.464998613511214 -0.197272139065363 -0.0070454335380487 -0.450907746435116 -0.619998151348285 1.79658555220242 1.13431479962584 0.922951793484379 0.627043584886334 0.718634220880967 0.824315723951697 -0.521362081815603
MMP1576 1.27072470300007 0.501634291097022 1.04193713177671 4.24985199754404 1.28304986985749 0.00123251668574207 0.0677884177158138 -0.0899737180591711 -0.264991087434545 -0.205830286518926 -0.200900219775957 -0.218155453376346 -0.0209527836576151 1.78838171101174 0.5361447582978 0.361127388922426 0.186110019547053 0.0801135845732345 -0.119554118516981 -0.0603933176013614 0.052998217486909 1.87958794575666 0.868924263448159 -0.255130953948608 -0.27978128766345 -0.00123251668574207 0.876319363562612 -0.0209527836576151 0.363592422293911 0.205830286518926 0.0308129171435518 -0.0406730506294883 -0.0801135845732345 0.191040086290021 0.0308129171435518
MMP1603 -0.170644180475414 -0.380667787214385 0.827092692430627 4.55924934523407 -0.0787588525271141 -0.0262529508423713 -0.892600328640628 -1.05011803369486 -1.0107386074313 -0.892600328640628 -0.892600328640628 -0.616944344795728 -0.393794262635571 0.813841476113514 1.1026239353796 0.6431972956381 0.196897131317786 -0.210023606738971 -0.695703197322842 -0.446300164320314 -0.695703197322842 0.840094426955885 -0.249403033002528 1.1945092633279 1.48329172259399 0.105011803369486 -0.236276557581343 0.0656323771059286 -0.157517705054228 0.105011803369486 0.0918853279483 0.3675413117932 0.170644180475414 0.210023606738971 -0.0525059016847427
[+] Show/hide bicluster #12 motif PSSM #1. bicluster 12 motif PSSM #1 Methanococcus maripaludis S2 23x4
POSITION A C G T
1 0 0.571429 0.142857 0.285714
2 0.285714 0 0.714286 0
3 0 0.428571 0.571429 0
4 0 0.714286 0.142857 0.142857
5 0.714286 0.142857 0 0.142857
6 0 0.142857 0.142857 0.714286
7 0.142857 0 0 0.857143
8 0 0.142857 0 0.857143
9 0 0 0 1
10 1 0 0 0
11 0.142857 0 0.285714 0.571429
12 0.571429 0.142857 0.285714 0
13 0.857143 0 0.142857 0
14 0.571429 0.428571 0 0
15 0.285714 0.142857 0 0.571429
16 0 1 0 0
17 0 0 0 1
18 0.857143 0 0 0.142857
19 0.285714 0.142857 0 0.571429
20 0.571429 0.285714 0 0.142857
21 0.142857 0 0 0.857143
22 0.142857 0.285714 0.571429 0
23 1 0 0 0 [+] Show/hide bicluster #12 motif PSSM #2. bicluster 12 motif PSSM #2 Methanococcus maripaludis S2 21x4
POSITION A C G T
1 0 0.666667 0 0.333333
2 0 0 0.666667 0.333333
3 0 1 0 0
4 0 0 0 1
5 0.666667 0.333333 0 0
6 0 0 1 0
7 1 0 0 0
8 0 0 0 1
9 0 0 0.333333 0.666667
10 0 0 0 1
11 0 0 0 1
12 0 0 0.666667 0.333333
13 1 0 0 0
14 0 0 0 1
15 0 0 0 1
16 0 0 1 0
17 0.666667 0 0.333333 0
18 0 0 0 1
19 0 0 1 0
20 0 1 0 0
21 0.333333 0.666667 0 0 |