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bicluster 11
Methanococcus maripaludis S2
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bicluster 11 genes
Methanococcus maripaludis S2
23
[+] Show/hide bicluster #11 rows (short gene names).
bicluster 11 short names
Methanococcus maripaludis S2
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short_name
[+] Show/hide bicluster #11 rows (long gene names).
bicluster 11 long names
Methanococcus maripaludis S2
23
long_name
[+] Show/hide bicluster #11 rows (NCBI RefSeq gene IDs).
bicluster 11 NCBI RefSeq IDs
Methanococcus maripaludis S2
46
[+] Show/hide bicluster #11 gene upstream sequences.
bicluster 11 upstream sequences
Methanococcus maripaludis S2
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upstream
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bicluster 11 arrays
Methanococcus maripaludis S2
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bicluster 11 ratios
Methanococcus maripaludis S2
23x38
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
MMP0044 -0.0674962808450264 -0.112493801408377 1.4486007568825 0.293160781363615 0.596679053441199 0.765031555515648 -0.0191621298497307 -0.32462496977846 0.388907142011818 -0.0353551947283471 -0.13820667030172 -0.286055666438445 -0.00964232583500377 0.0289269775050113 0.273199231991773 -0.157491321971728 -0.125350235855049 -0.163919539195064 2.04738718563246 2.40736735013927 1.95096392728243 1.43027833219222 -0.183204190865071 -0.0610680636216905 0.00964232583500377 -0.517471486478535 -0.826025913198655 -0.755315523741961 -0.716746220401946 -0.626751179275244 1.75168919335902 2.40736735013927 1.93810749283576 1.50098872164892 0.890308085432014 0.221773494205086 0.414620010905162 0.748887306518625
MMP0093 -0.461638645552988 -0.0419671495957262 1.0882664546816 -0.494580065262587 0.300288659539361 0.668264295737478 -0.797206722336318 -1.12548264824902 0.423486691375055 0.652398416442652 0.0648583221024858 -0.316661219676843 -0.0801191037736591 0.225096529649804 0.0419671495957261 -0.766854278976451 -0.957614049866115 -0.377704346361536 1.16363460242695 1.74354430593153 1.60619727089097 1.56041492587746 -0.949983659030529 -0.759223888140864 -0.705811152291759 -1.92667368598561 0.186944575471871 -0.217466138814218 -1.7053923517536 -1.16363460242695 1.16363460242695 2.02586876684824 1.75880508760271 0.934722877359356 0.606616071429133 -0.171683793800698 0.125901448787178 0.713441543127345
MMP0094 -0.0331615510307819 0.363729550495225 0.628385294202878 -0.756766967454803 -0.0308531427637353 0.170714647871463 0.673092490596154 -0.430052652556789 -0.0715703673074923 -0.430052652556789 -0.87815550911841 -0.929367264154024 -0.583687917663631 -0.50687028511021 -0.0715703673074923 -0.442855591315693 0.632591264432198 0.325320734218515 0.568576570637681 1.45197934500202 1.50319110003763 1.08069412099382 -1.13421428429648 -0.967776080430735 -0.814140815323893 0.0308531427637354 -0.21240269365543 -0.13558506110201 0.773423590780136 -0.430052652556789 1.50319110003763 2.62984971082114 2.57863795578552 1.87447632404583 1.13190587602943 0.568576570637681 0.466153060566453 0.78622652953904
MMP0150 -0.021812556922861 0.392626024611498 1.18340540847758 -0.598095931954046 0.0728910978130737 0.612225135669892 1.11273631766626 -0.828877163068717 0.245391265382186 0.419891720765074 -0.21812556922861 -0.381719746150067 -0.261750683074332 0.250844404612901 0.245391265382186 -0.55076706230224 -0.877955416145154 0.021812556922861 1.05790901075876 1.608676073061 1.49416014921598 1.0360964538359 -0.77979890999228 -0.485329391533657 -0.796158327684426 -1.5377852630617 -0.948846226144452 -1.50506642767741 -1.52142584536955 -1.64139490844529 1.47780073152383 2.00130209767249 1.84316105998175 1.28148771921808 0.703454960762267 0.0599845315378677 0.141781619998596 0.681642403839405
MMP0151 -0.194837822894151 0.176058273699534 1.21167903071617 -0.377578958800758 0.22519430218814 0.80288145638211 -0.101207774699948 -0.509395271903985 0.194837822894151 0.495310610008023 -0.0117372182466356 -0.345074216451087 -0.129109400712992 0.32629466725647 0.523479933799948 -0.401412864034938 -0.434277075125517 -0.190142935595497 1.00705332556133 1.40142385864829 1.25118746509136 0.894376030393633 -0.650241890863613 -0.504700384605331 -0.509395271903985 -1.04461242395057 -1.17137438101423 -1.56105002680254 -1.92255634879891 -1.64086311087966 1.51879604111465 1.94603078529218 1.75354040604736 1.27466190158463 0.842732270108436 0.166668499102226 0.274650906971273 0.903765804990942
MMP0159 0.00546072003650107 0.285777681910225 1.10691062066789 -0.371559550486817 0.374141309750955 0.660169562260775 -0.746355189195906 -0.577016083856952 0.314901522104898 0.777242485195326 0.271215761812889 -0.14743944098553 -0.092832240620519 0.198406161326207 0.445958802980925 -0.507846963394604 -0.413194482761918 -0.708073364732979 0.649825684343633 1.14493096765307 1.22502152818842 1.14129048762873 -0.387711122591579 -0.285777681910225 -0.303980082031896 -0.737197204927651 -1.21410008811542 -1.3196740088211 -1.98588185327424 -1.76381257178986 0.911940246095687 1.69100297130318 1.82934121222787 1.39976456935645 1.01751416680138 0.413194482761918 0.263934801764221 0.613420884100292
MMP0258 -0.237645138599893 0.0787751039326203 0.710542981331105 -0.871020968744855 -0.300366332450574 -0.0584262890022853 -0.151773234899656 -1.03502414978183 0.142059152439123 0.939438163621056 0.116745533036522 -0.294600782255745 0.110417128185872 0.142059152439123 0.654659945341794 -0.769231146054515 -0.383198450164849 -1.40840003597019 -0.262958758002494 1.30015724010812 2.54685299568622 1.59759226808868 -0.294600782255745 -0.370541640463548 -0.256630353151844 -0.978068506125974 -0.592035810236308 -0.661648263593461 -0.819858384859717 -1.30081715350914 0.452150990120986 1.86971367666665 1.81908643786144 1.29382883525747 1.19257435764707 0.07244669908197 0.281284059153429 0.711615588997647
MMP0259 -0.206718575739111 0.358124396241124 0.55534148706065 -0.450234338723932 -0.0979039825728363 0.139855392677619 0.0568622770504774 -0.771561547719346 0.181370813172479 0.784638477124159 0.100678960032445 -0.2489857369077 0.0968364908353009 0.212110566749635 0.500295756535469 -0.71392450976218 -0.63707512581929 -0.813828708887935 0.20826809755249 1.34948144910439 1.97580392823894 1.19578268121862 -0.168293883767667 -0.195191168147678 -0.245143267710556 -0.909890438816547 -0.932945253999414 -0.898363031225114 -2.17790527387422 -1.93582971445412 0.273590073903946 1.44938564823015 1.42248836385014 0.999816752164248 0.869172799461337 0.142946121201034 0.0737816756524342 0.411918965001146
MMP0572 -0.0229201162505653 0.0585736304181113 1.448540885276 -0.238038395327996 0.363303783072598 0.793918136050296 -0.577117489879919 -0.914257970439215 0.124787299586411 0.430388849593948 -0.0738537079184881 -0.425295490427156 -0.206281046255087 0.0738537079184881 0.374361898759233 -0.730897040434693 -0.623936497932055 -0.944818125439968 0.119693940419619 0.659590012099601 0.878604456271669 0.669776730433185 -0.639216575432431 -0.491509159595455 -0.516975955429417 -0.980471639607514 -1.63242161295693 -1.30135326711543 -1.93802316296446 -1.5865813804558 1.13327241461128 1.66298176795768 1.7139153596256 1.36247357711694 1.05177866794261 0.384548617092817 0.364175180425648 0.730897040434693
MMP0574 -0.379193625498547 -0.0208094629122549 1.2363967499204 -0.742832159834697 0.0208094629122549 0.754063650702029 0.832459636745398 -0.880931453119357 -0.0924862954295134 0.636228168495948 0.319655491544723 -0.456843527392244 -0.116378572935266 0.331601630297599 0.624282029743072 -0.630062539308952 -0.761470065590593 -1.05415046503606 0.474955295332116 1.25742738364552 1.80694976627784 1.53816164433812 -0.540466498662379 -0.247786099216907 -0.582277984297446 -1.28112710134072 -1.09596195067113 -0.80328155122566 -1.72910730457358 -1.37669621136373 0.952800845447173 1.91446501505372 1.86070739066578 1.46648481182086 1.05434302484662 0.134490340875138 0.212140242768835 0.516766780967184
MMP0575 -0.518125834066953 -0.322248994358715 0.81400949618916 -0.334567827817336 0.204674818566143 0.318039405196545 0.750384566282467 -0.593949126857239 -0.0315930386626191 0.61290495005481 0.233788486103381 -0.290655955696096 -0.132690762383 0.21483266290581 0.581311911392191 -0.568674695927144 -0.770870143367906 -1.06784470679653 0.587630519124715 1.47223560167805 2.03459168987267 1.66179383365376 -0.518125834066953 -0.404390894881524 -0.581311911392191 -1.20685407691205 -1.18157964598195 -0.985702806273716 -1.82607763469938 -1.47223560167805 1.18157964598195 1.95876839708238 1.95876839708238 1.459598386213 1.14998660731933 0.309611778893667 0.208514055173286 0.499170010869382
MMP0576 -0.359211128888169 -0.00402653484073792 0.738556860999806 -0.307058903406017 0.00402653484073793 0.306724184793233 0.274832166217587 -0.97159836000443 0.112327039071352 0.614484568586685 0.124574783693677 -0.340839511954681 -0.0101504071519005 0.308290953028555 0.626732313209011 -0.696024106002113 -0.849120913781178 -0.891988019959316 0.455263888496458 1.3983402244155 2.01072745553176 1.46570281983829 -0.530679553600722 -0.493936319733747 -0.738891212180251 -1.26554423094024 -1.54111848494255 -1.30228746480721 -1.85343597281185 -1.60848108036534 1.09827048116853 1.86375452006386 1.74127707384061 1.12276597041318 0.865563333344352 0.0388405713374003 0.0817076775155386 0.314414825339718
MMP0577 -0.138424661280189 0.162498515415874 0.9351763742975 -0.226962994524866 0.484234772797262 0.636511361230145 0.0974286992446412 -0.80647411354545 0.0180553906017638 0.686104842867025 0.090276953008819 -0.306941640229985 -0.0361107812035276 0.433329374442331 0.565735572188599 -0.511569400383308 -0.601846353392127 -0.680086379333103 0.571754035722521 1.49257895641247 1.84766830491383 1.52267127408208 -0.451384765044095 -0.33101549436567 -0.704160233468789 -1.23980348798778 -1.71526210716756 -1.34813583159836 -1.51063434701424 -1.46850510227679 1.20971117031818 1.95600064852441 1.76942827897285 1.14952653497896 0.788418722943686 -0.0180553906017638 0.108332343610583 0.300923176696063
MMP0578 -0.325969376921934 0.0133960017913124 0.917252365324251 -0.245614585440897 0.359476800667878 0.68752867537495 0.11382434919525 -0.468860062695933 0.0223266696521873 0.495652066278558 -0.0133960017913123 -0.250058700104497 -0.0714453428869992 0.330434710852372 0.544770739513369 -0.357226714434996 -0.352761380504559 -0.241128032243623 0.500117400208995 1.3351348452008 1.70129222749667 1.35746151485299 -0.317038709061059 -0.267920035826247 -0.486721398417682 -0.875205450365741 -1.67450022391405 -1.54500553993136 -2.12103361695779 -1.75487623466192 1.05381880758324 1.66556955605317 1.48249086490524 1.04488813972236 0.687661425287368 0.102702680400061 0.0803760107478742 0.236662698313185
MMP0625 -0.0388083899623903 0.385801053155527 0.865398104011155 -0.301820035138192 0.19420472133084 0.442835588876186 -0.471559732849173 -0.687136786981146 0.171213485128192 0.700833865791401 0.171213485128192 -0.253395957989725 0.0388083899623903 0.157516406317937 0.541034613005088 -0.709965251664905 -0.477114911890563 -0.276224422673484 0.64604555055038 1.50439582265972 1.76007462711782 1.36285934162041 -0.472549218953811 -0.436023675459797 -0.449720754270052 -0.814976189210196 -1.14827177359308 -1.15283746652983 -2.07510743975369 -1.99749065982891 0.586691542372606 1.65962938250928 1.84225709997935 1.36742503455716 0.924552819692239 0.116425169887171 0.0707682405196529 0.477114911890563
MMP0971 0.242760895999097 0.211436909418569 1.22534779192423 -0.114814149481609 0.314108393812202 0.6894008812586 0.0413612725584671 -0.501183785288459 0.36022584567608 0.485521791998194 0.0861409630964539 -0.297577872515022 -0.0626479731610574 -0.0156619932902643 0.164450929547776 -0.46985979870793 0.0156619932902644 -0.775268667868085 0.501183785288459 0.837916641029142 0.931888600770728 0.595155745030045 -0.524676775223855 -0.375887838966344 -0.618648734965441 -0.321070862450419 -1.48788936257511 -1.50355135586538 -1.80896022502553 -1.55053733573617 1.24512846657601 1.61318530889723 1.43307238605919 1.10417052696364 0.853578634319406 0.446366808772534 0.524676775223855 0.963212587351257
MMP1472 -0.864815587788195 -0.436374837874777 0.742861467538405 -0.982039896708876 0.0344624886007855 0.41063524426047 -0.0873458348486263 -0.150747671265832 -0.00793408796135959 0.785474708174599 0.325297606415743 -0.261824902724866 0.0396704398067979 0.420506661952058 0.690265652638284 0.00793408796135959 -0.166615847188551 -0.658529300792846 1.00762917109267 1.35672904139249 1.24565180993346 1.08697005070626 -0.896551939633633 -0.230088550879428 0.00793408796135959 -1.48367444877424 -0.57918842117925 -1.42020174508337 -1.72169708761503 -1.43606992100609 1.13457457847442 1.78516979130591 1.9438515505331 0.991760995169948 0.848947411865476 -0.119011319420394 0.166615847188551 0.214220374956709
MMP1473 -0.149454024333288 0.321900975487082 1.31410375595335 -0.64971604215691 0.0979855532777803 0.5638065809816 1.43280852300067 -0.436865609589611 -0.137957560923035 0.597816097333152 -0.0229929268205058 -0.47135499982037 -0.1954398779743 0.241425731615311 0.229929268205058 -0.55183024369214 -0.47135499982037 -0.643801950974164 0.82774536553821 1.5635190237944 1.63249780425591 1.04617817033302 -0.712780731435681 -0.367886829128093 -0.321900975487082 -1.32209329217909 -0.137957560923035 -0.55183024369214 -1.55202256038414 -1.20712865807656 1.12665341420479 2.11534926748654 2.16133512112755 1.28760390194833 1.18413573125605 0.425369146179358 0.310404512076829 0.344893902307588
MMP1509 -0.466599973161107 0.163144706468319 1.62491150242717 -0.00121036027789519 0.279491673366022 0.779826439270197 0.680436526393703 -1.53716592853113 -0.421618210330433 -0.421618210330433 -0.51158173599178 -0.772475960409685 -0.547567146256318 0.0731811808069724 0.442031636018493 -1.03337018482759 -0.520578088557914 0.12715929620378 0.51400245654757 0.981812789986572 2.16033497615021 1.68352829014507 0.00121036027789519 0.433035283452358 0.271100937261935 -1.20430088358415 0.0911738859392417 -0.610541614219261 -1.61813310162634 -1.45619875543592 0.882852911759091 1.74650275810802 2.46621096339879 1.29668512980128 0.675936802737994 0.0551884756747031 -0.0257786974205088 -0.160723985912528
MMP1584 0.34385950487243 0.811962790677851 0.381736981298892 -0.355261052023527 0.119034645836229 0.0555119005603792 0.0568539303901506 -1.43939110771965 0.603916885875441 0.306708450443428 -0.384301161936004 -0.837544025969825 -0.540335590537811 -0.220836522448396 0.336429293986629 -1.14218267228764 -0.651788753824816 -0.755811706226021 0.321568872215029 1.09431080433826 0.767381525363049 0.388440770187231 -1.32050773354685 -1.23134520291724 -1.06045035254383 -0.807823182426623 -0.666649175596417 -0.629498121167415 -0.926706556599429 -1.28335667911785 1.74816936228869 2.40202792023912 2.26085391340892 1.8150412602609 1.55498387925788 0.997718062822859 0.841683634221052 0.804532579792051
MMP1705 -0.31128223328972 -0.11319353937808 2.43576692093692 0.125221645229909 0.717836610537101 0.759720040636415 0.407899267419911 -0.858384340283773 0.433908567615973 -0.05659676968904 -0.50937092720136 -0.67916123626848 -0.499938132253187 -0.53766931204588 -0.273551053497027 -0.490505337305013 0.207521488859813 -0.499938132253187 1.18853216346984 2.09408047849448 2.17897563302804 1.43378483212235 0.00943279494817334 0.122626334326253 0.245252668652507 -0.405610182771453 -0.415042977719627 -0.707459621113 -0.867817135231947 -0.971577879661853 1.28286011295157 2.24500519766525 2.22613960776891 1.54697837150043 1.26399452305523 0.726325211009347 0.631997261527613 0.349013413082413
MMP1708 -0.0568885537330732 -0.181545451233768 0.744534050031678 -0.353748021987791 0.0817681126276453 0.264980681212035 -0.0531028264145986 -0.958817870943982 0.185092482591805 0.551730416417378 -0.174212692557257 -0.584847178441898 -0.328200624763997 0.0677683437676214 0.141095930532736 -0.885490284178868 -1.12747132050375 -0.863492008149333 0.801044211418767 1.71030628730619 1.66630973524712 1.21901145597992 -0.650842006530501 -0.504186833000272 -0.364864418146554 -1.90474374021396 0.647056279212026 0.925701108919462 -1.95607305094954 -1.69209373859513 1.38766490553968 2.15027180789687 1.71030628730619 0.793711452742256 0.896370074213416 0.0970993784736673 0.251087310680408 0.346413173475057
MMP1709 -0.274537502997731 0.0116680673691452 0.753079807114553 -0.91660913026679 -0.0670365616014673 0.200514176100611 -0.571634007522065 -1.41162449877965 0.437108780076665 0.645961493587629 0.00393278168355396 -0.537537216307834 -0.158508217713863 0.251461923622474 0.321079494792796 -0.986183786072128 -1.0093896431289 -0.553007787679017 0.792931921613863 1.77531320368395 1.69022506114245 1.27251963412052 -0.653566501591703 -0.382831502596009 -0.290008074368914 -1.76744764031684 0.638226207902037 0.344285351849569 -1.69009478346093 -1.48124206994997 1.43496063351794 2.13113634522115 1.35760777666202 0.274667780679248 0.630490922216446 -0.297743360054505 0.174109066766562 0.344285351849569
[+] Show/hide bicluster #11 motif PSSM #1. bicluster 11 motif PSSM #1 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0.4 0.6 0 0
2 0 0 0.2 0.8
3 0 1 0 0
4 0.6 0 0.4 0
5 0 1 0 0
6 0 1 0 0 [+] Show/hide bicluster #11 motif PSSM #2. bicluster 11 motif PSSM #2 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0.333333 0 0.666667 0
2 0 0.444444 0 0.555556
3 0 1 0 0
4 0 0.888889 0.111111 0
5 0 1 0 0
6 1 0 0 0 |