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[+] Show/hide bicluster #6 rows and columns.
bicluster 6
Methanococcus maripaludis S2
17x38
[+] Show/hide bicluster #6 rows (genes).
bicluster 6 genes
Methanococcus maripaludis S2
17
[+] Show/hide bicluster #6 rows (short gene names).
bicluster 6 short names
Methanococcus maripaludis S2
17
short_name
[+] Show/hide bicluster #6 rows (long gene names).
bicluster 6 long names
Methanococcus maripaludis S2
17
long_name
[+] Show/hide bicluster #6 rows (NCBI RefSeq gene IDs).
bicluster 6 NCBI RefSeq IDs
Methanococcus maripaludis S2
34
[+] Show/hide bicluster #6 gene upstream sequences.
bicluster 6 upstream sequences
Methanococcus maripaludis S2
17
upstream
[+] Show/hide bicluster #6 columns (arrays; conditions).
bicluster 6 arrays
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #6 ratios.
bicluster 6 ratios
Methanococcus maripaludis S2
17x38
GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0110 -0.747552271980289 1.69562706556513 0.609116666058013 -0.318401893621234 -0.0692178029611378 0.276871211844551 -0.138435605922276 -0.51221174191242 -0.332245454213462 0.470681060135738 -1.23207689270825 -0.276871211844551 -0.235340530067869 0.581429544873558 0.318401893621234 0.706021590203606 0.553742423689103 0.692178029611379 -0.0276871211844551 0.4014632571746 0.733708711388061 1.0521106050093 2.35340530067869 2.92099128496002 1.57816590751394 2.68565075489215 0.706021590203606 -0.263027651252324 -0.304558333029007 -0.830613635533654 -0.51221174191242 -0.304558333029007 0.152279166514503 -0.51221174191242 -0.415306817766827 -0.816770074941427 -0.816770074941427 0.0276871211844552
MMP0195 0.279943977172232 1.35745602887689 -0.160818880503197 -0.553931699511012 -0.494369151176495 -0.113168841835583 0.256118957838425 -0.458631622175784 0.0774313128348726 0.744531854181468 -1.5307574921971 -1.13764467318928 -0.744531854181468 0.00595625483345171 -0.268031467505328 0.291856486839135 1.03043208618715 0.982782047519537 0.780269383182178 0.637319267179336 1.28059478919212 1.36398235686045 2.43610822688176 2.30507062054582 1.99534536920633 2.06682042720775 0.95895702818573 -0.0416937838341622 -0.875569460517406 -1.38780737619426 -1.11381965385548 -1.12573216352238 -0.780269383182178 -0.851744441183599 -0.851744441183599 -0.935132008851923 -1.05425710552096 0.303768996506039
MMP0196 -0.269138585393123 2.72971620097098 0.216660965992744 -0.377094041256649 -0.539027225051937 -0.0127443777172489 0.581010629532143 -0.566016089017819 -0.120699833580775 0.540527333583321 -1.14627666428427 -0.700960408847226 -0.57951052100076 0.216660965992744 0.0817166461633362 0.176177670043921 1.09379904488389 0.904876997122721 0.392088581770973 0.459560741685677 0.972349157037424 1.18826006876448 2.99651395447853 2.61866985895619 2.05190371567268 2.33528678731444 1.14777677281565 -0.0397332416831304 -0.458060633154293 -1.14627666428427 -0.862893592642515 -0.835904728676634 -0.431071769188412 -0.795421432727811 -0.9573546165231 -0.754938136778989 -0.660477112898404 0.122199942112158
MMP0197 -0.543035232702735 1.84978007760453 0.314719721347359 -0.437465392204262 -0.292306861518861 0.248738571035813 -0.186737021020388 -0.648605073201208 -0.252718171331934 0.736999083341251 -0.912529674447391 -0.872940984260463 -0.965314594696627 0.539055632406614 0.14316873053734 0.486270712157378 0.697410393154324 0.578644322593542 -0.0547747203972969 0.129972500475031 0.697410393154324 0.868961383964343 2.08301454969678 2.47890145156606 1.54196911714211 2.58447129206453 0.486270712157378 -0.371484241892716 -0.688193763388135 -1.08408066525741 -1.05768820513279 -0.556231462765044 0.0112064299142488 -0.477054082391189 -0.00198980014806032 -0.952118364634318 -1.11047312538203 -0.00198980014806032
MMP0339 -0.278897054077954 2.39363670336604 0.613660877441505 -0.240644571298549 -0.0876346401809271 -0.0493821574015217 0.690165843000316 -0.444657812788711 -0.495661123161251 0.435149291137613 -1.49022567542579 -0.661421881872008 -0.406405330009305 -0.100385467774062 0.549906739475829 0.180132739274911 0.664664187814046 0.5754083946621 0.651913360220911 0.690165843000316 0.957933222456154 1.20019894672572 2.16926184380399 2.37327508529415 1.9907502575001 1.82498949878934 0.62641170503464 -0.406405330009305 -0.610418571499468 -0.992943399293521 -0.86543512336217 -0.648671054278873 -0.431906985195576 -0.801680985396495 -0.916438433734711 -0.572166088720062 -0.610418571499468 0.0781261185298296
MMP0436 -0.0683165517129778 1.94800813891932 0.022772183904326 -0.235312567011368 -0.220131111075151 0.0379536398405433 -0.296038390756237 -0.857752260396277 -0.432671494182193 0.67557478916167 -1.38910321816388 -0.614848965416801 -0.614848965416801 0.569304597608149 -0.11386091952163 0.326401302628672 0.84257080446006 0.660393333225452 0.129042375457847 0.493397317927062 0.903296628204929 1.16138137912062 2.23926475059205 2.70988988461479 1.85972835218662 2.39107930995422 0.827389348523843 -0.326401302628672 -0.614848965416801 -0.903296628204929 -0.67557478916167 -0.387127126373541 0.220131111075151 -0.356764214501107 0.00759072796810866 -0.918478084141147 -0.933659540077364 -0.0227721839043259
MMP0437 -0.149108901420612 1.54078382011912 0.357861363409469 -0.298217802841224 -0.253485132415041 0.283306912699163 -0.432415814119776 -0.670990056392755 -0.477148484545959 0.656079166250694 -1.43144545363788 -0.626257385966571 -0.566613825398326 0.432415814119776 0.223663352130918 0.536792045114204 0.820098957813368 0.596435605682449 0.357861363409469 0.536792045114204 0.954296969091918 1.2674256620752 1.86386126775765 2.43047509315598 1.58055435505849 2.50502954386629 0.700811836676878 -0.387683143693592 -0.641168276108633 -0.924475188807796 -0.760455397245122 -0.268396022557102 0.223663352130918 -0.328039583125347 0.0149108901420612 -1.07358409022841 -1.01394052966016 -0.0149108901420612
MMP0461 -0.470538466323483 0.984221269672035 -0.346799285529946 -0.403044367708826 -0.189313055429081 0.440631864974378 0.114410388336872 -0.189313055429081 -0.0655738746355447 0.800600390919211 -0.639273712860123 -0.886752074447197 -0.661771745731675 0.440631864974378 0.508125963589034 0.654363177254123 0.980584653891628 1.23931203191448 0.778102358047659 0.530623996460586 1.1830669497356 1.38554924557957 2.08298826459768 2.36421367549208 2.28547056044165 2.70168416856536 0.924339571712748 -0.301803219786842 -0.76301289365366 -0.976744205933405 -0.954246173061853 -0.560530597809691 -0.211811088300633 -0.504285515630811 -0.211811088300633 -0.954246173061853 -0.920499123754525 0.305643667745065
MMP0515 -0.150873818127749 1.63221399982332 0.452621454383247 -0.63092687580695 -0.356610842847406 0.233168628015612 -0.0960106115358402 -0.438905652735269 -0.329179239551452 0.877811305470539 -1.20699054502199 -1.13841153678211 -0.836663900526607 0.0548632065919087 0.233168628015612 0.589779470863018 0.946390313710425 0.781800693934699 0.137158016479772 0.425189851087292 0.864095503822562 1.20699054502199 1.81048581753299 2.38654948674803 1.48130657798153 2.77059193289139 1.06983252854222 -0.425189851087292 -0.644642677454927 -1.06983252854222 -1.11097993348615 -0.425189851087292 0 -0.411474049439315 0 -0.932674512062448 -1.19327474337401 -0.0137158016479771
MMP0519 -0.151707047050163 1.11393354192434 0.248247895172994 -0.248247895172993 -0.0275830994636659 0.855076083373644 0.0689577486591649 -0.013791549731833 -0.468912690882321 0.717160586055314 -1.35157187371963 -0.786118334714479 -0.799909884446312 0.758535235250813 0.51028734007782 0.896450732569143 0.772326784982646 0.524078889809653 -0.151707047050163 0.0827492983909979 0.689577486591648 1.06194932935114 1.87565076352928 2.48247895172993 1.80669301487012 2.57901979985277 0.537870439541486 -0.413746491954989 -0.758535235250813 -0.758535235250813 -0.841284533641811 -0.344788743295824 -0.0413746491954988 -0.386163392491323 -0.013791549731833 -0.896450732569143 -0.855076083373644 -0.013791549731833
MMP0740 -0.336573763493723 2.02026067527509 0.323628618743964 -0.103561157998068 0.207122315996137 0.530750934740101 -0.0129451447497586 -0.220067460745896 -0.220067460745896 1.2168436064773 -0.996776145731409 -0.763763540235755 -0.401299487242515 0.0388354342492757 0.647257237487928 0.893214987733341 0.608421803238652 0.919105277232858 0.375409197742998 0.72492810598648 1.10033730372948 1.26862418547634 2.22656489695847 2.47252264720389 2.47252264720389 2.43368721295461 0.63431209273817 -0.297738329244447 -0.724928105986479 -1.07444701422996 -1.03561157998069 -0.569586368989377 0.0129451447497586 -0.440134921491791 -0.0906160132483099 -0.854379553484065 -0.919105277232858 0.0776708684985514
MMP0766 -0.614892751587317 1.92071012095464 0.0547924234087708 -0.29831430522553 -0.261786022953016 0.17655336431715 -0.35919477567972 -0.639244939768993 -0.639244939768993 0.663597127950668 -1.19934526794754 -0.700125410223182 -0.541836187042289 0.639244939768992 0.200905552498826 0.493131810678937 0.566188375223965 0.420075246133909 -0.200905552498826 0.0182641411362569 0.578364469314803 0.931471197949103 2.12472841885122 2.13690451294206 1.57680418476351 2.1490806070329 0.371370869770558 -0.432251340224747 -0.687949316132344 -0.967999480221617 -1.15064089158419 -0.566188375223965 -0.152201176135474 -0.505307904769775 -0.0182641411362569 -0.89494291567659 -0.821886351131562 -0.140025082044636
MMP0832 -0.327833860557299 1.89329530523103 0.060363946686565 -0.313456163992712 -0.370966950251062 0.204140912332441 -0.040279929265548 -0.241567681169774 -0.0977907155238983 0.836759561174294 -1.44929419259513 -1.56431576511183 -1.17611795786797 0.391050967672079 -0.0977907155238983 0.261651698590791 0.865514954303469 0.692982595528418 0.14663012607409 0.347917877978316 1.0668027062077 1.05242500964311 2.26015152106846 2.70586011457068 2.04448607259965 2.57646084548939 0.879892650868057 -0.457233129638588 -0.687276274671989 -1.16174026130338 -0.701653971236576 -0.716031667801164 -0.313456163992712 0.103497036380328 0.276029395155379 -0.428477736509412 -0.414100039944825 -0.0546576258301356
MMP0847 -0.236417152769258 2.14784178260156 -0.0424338479329437 -0.345532761739685 0.103053630694292 0.418276501053303 0.0788057175897526 -0.284912978978337 -0.236417152769258 0.309160892082876 -0.369780674844224 -0.406152544501033 -0.345532761739685 0.236417152769258 0.697127501755504 1.02447432866678 0.248541109321528 0.636507718994156 0.260665065873797 0.442524414157842 0.794119154173661 0.903234763144088 1.84890337422112 2.1762502011324 1.08509411142813 2.24899394044602 0.297036935530606 -0.563763979680538 -0.939606632800897 -1.2184576335031 -1.23058159005537 -0.927482676248627 -0.575887936232808 -0.709251458307774 -0.297036935530606 -1.06084619832359 -1.07297015487586 -0.115177587246562
MMP1172 -0.186376361123521 2.54785859785604 0.210424923849137 -0.342692018840023 0.234473486574752 0.607226208821794 0.306619174751599 -0.282570612025983 -0.486983395193716 0.63127477154741 -1.40082877876711 -0.547104802007755 -0.547104802007755 0.0420849847698273 0.474959113830908 1.78560578237696 0.559129083370563 0.655323334273025 0.114230672946674 0.390789144291254 0.883784680166374 1.24451312105061 1.86977575191661 1.89382431464223 2.14633422326119 2.25455275552646 0.511031957919332 -0.462934832468101 -0.751517585175488 -1.20844027696218 -1.2324888396878 -1.06414890060849 -0.595201927458986 -0.667347615635833 -0.270546330663176 -0.895808961529182 -1.08819746333411 -0.0541092661326352
MMP1276 -0.786322755471842 1.98653214241533 0.288296258949694 -0.0145509178418299 0.258988467647288 0.434835215461721 0.229680676344883 0.24921920387982 0.219911412577414 0.571604908206281 -0.737476436634499 -0.825399810541716 -0.786322755471842 -0.0731665004466409 0.171065093740072 0.337142577787036 0.874452084997804 1.30429969076642 0.591143435741217 0.659528282113497 0.893990612532741 0.991683250207426 2.22261048490846 2.12491784723377 2.0858407921639 2.73061220081682 1.08937588788211 -0.0145509178418299 -0.503014106215255 -0.727707172867031 -0.678860854029688 -0.542091161285129 -0.327167358400822 -0.483475578680318 -0.229474720726137 -0.844938338076653 -1.00124655835615 0.24921920387982
MMP1571 -0.564624690020785 2.10541879820411 0.579681348421339 -0.414058106015242 -0.188208230006928 0.15809491320582 -0.308661497211362 -0.670021298824664 -0.399001447614688 0.639907982023556 -1.1518343676424 -0.805531224429653 -0.670021298824664 -0.112924938004157 0.188208230006928 0.338774814012471 0.685077957225219 0.715191274026327 -0.00752832920027713 0.233378205208591 0.850701199631315 1.1518343676424 2.23591377248231 2.43165033168951 1.93478060447122 2.61233023249616 0.489341398018013 -0.489341398018013 -0.730247932426881 -0.986211125236304 -1.06149441723908 -0.534511373219676 0.00752832920027713 -0.429114764415796 0.0677549628024941 -1.03138110043797 -1.10666439244074 -0.0225849876008314
[+] Show/hide bicluster #6 motif PSSM #1. bicluster 6 motif PSSM #1 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0.857143 0.071429 0 0.071429
2 0.928571 0 0.071429 0
3 0 0 0 1
4 0 0 0 1
5 0.071429 0 0 0.928571
6 0 0 0 1
7 0.857143 0 0.071429 0.071429
8 0.285714 0 0.714286 0
9 0.857143 0 0.142857 0
10 0.239996 0.010004 0.510004 0.239996
11 0.097139 0.081433 0.581433 0.239996 [+] Show/hide bicluster #6 motif PSSM #2. bicluster 6 motif PSSM #2 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 0 1 0 0
4 0 0 0 1
5 0 0 0.5 0.5
6 0 1 0 0
7 0 1 0 0
8 0 0 1 0 |