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[+] Show/hide bicluster #2 rows and columns.
bicluster 2
Methanococcus maripaludis S2
15x40
[+] Show/hide bicluster #2 rows (genes).
bicluster 2 genes
Methanococcus maripaludis S2
15
[+] Show/hide bicluster #2 rows (short gene names).
bicluster 2 short names
Methanococcus maripaludis S2
15
short_name
[+] Show/hide bicluster #2 rows (long gene names).
bicluster 2 long names
Methanococcus maripaludis S2
15
long_name
[+] Show/hide bicluster #2 rows (NCBI RefSeq gene IDs).
bicluster 2 NCBI RefSeq IDs
Methanococcus maripaludis S2
28
[+] Show/hide bicluster #2 gene upstream sequences.
bicluster 2 upstream sequences
Methanococcus maripaludis S2
15
upstream
[+] Show/hide bicluster #2 columns (arrays; conditions).
bicluster 2 arrays
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #2 ratios.
bicluster 2 ratios
Methanococcus maripaludis S2
15x40
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
Antisense_10 -0.503138023858437 -0.417637444640663 -1.50662376017254 -0.709134326020016 -0.537876041034891 -1.16242430860941 -1.35249130697441 5.42369406905657 -0.272944156733662 0.0493272572410232 0.0887890630338418 0.141404804090933 0.31240596252648 0.167712674619479 -0.0822120954017053 0.4242144122728 0.0164424190803411 0.233482350940843 0.667562214661848 0.674139182293984 0.858294275993804 -0.200597512780161 0.00328848381606822 0.358444735951435 0.0887890630338418 -0.00328848381606822 0.345290800687163 1.13452691654353 1.0556033049579 1.35814381603617 1.36472078366831 -0.194020545148025 -0.614946473604756 -0.713600988086803 -0.891179114154486 -1.10821904601499 -1.1279499489114 -0.950371822843714 -0.917486984683032 0.0427502896088868
MMP0102 -0.336482761747126 -0.274171139201362 -1.6918080958855 -0.550872971484986 -0.955288281619375 -1.36692529071614 -1.45480496716997 4.70999623813978 0.274171139201362 0.317789274983397 0.454874844584078 0.535879953893571 0.39879438429289 0.355176248510855 0.062311622545764 0.118392082836952 0.0186934867637292 -0.39879438429289 0.218090678910174 0.454874844584078 0.48603065585696 0.0810051093094933 -0.180703705382716 0.211859516655598 -0.0186934867637292 0.230553003419327 0.648040874475946 1.50794126560749 1.56402172589868 1.27738826218816 1.41447383178884 -0.149547894109834 -0.579498089675606 -0.791357606331204 -1.17768966611494 -1.04060409651426 -0.928443175931885 -1.09045339455087 -1.15899617935121 -0.218090678910174
MMP0115 -0.692827010327361 -0.32095819967242 -1.65780706857241 -0.789910486407361 -0.959358548423449 -1.35016188299668 -1.19217472033077 4.5026927761484 -0.409498392685501 0.546735691855777 0.825637299846983 0.93188553146268 1.01599871482511 1.02042572447576 0.79022122264175 0.17929389085149 0.121742765392987 0.391790354082884 0.524600643602506 0.630848875218204 0.878761415654831 -0.0154945337772892 -0.219136977707376 0.0154945337772892 -0.227990997008684 -0.112888746091679 0.192574919803452 0.737097106833901 0.834491319148291 0.821210290196329 0.732670097183247 -0.307677170720457 -0.621994855916896 -0.754805145436518 -0.936312541113334 -0.985009647270529 -0.927458521812026 -1.04698778237969 -0.980582637619875 -0.347520257576344
MMP0182 -0.157769552061239 0.104187440040441 -2.05862210045488 -0.740367510756435 -1.05561593787477 -1.36288906650786 -1.73477109501945 4.74448916867502 -0.0744196000288865 0.0327446240127101 0.455447952176786 0.336376592130567 0.372098000144433 0.598333584232248 0.342330160132878 0.473308656183718 0.175630256068172 -0.175630256068172 0.389958704151366 0.00297678400115546 0.717404944278466 -0.110141008042752 0.360190864139811 0.431633680167542 0.247073072095903 0.407819408158298 0.765033488296954 1.36634385653036 1.86644356872447 1.56876516860893 1.27704033649569 -0.28874804811208 -0.514983632199895 -0.93768696036397 -1.07461902441712 -1.09247972842405 -1.03294404840095 -0.604287152234559 -0.360190864139811 -0.00297678400115546
MMP0305 -0.595670471145108 -0.486320336345523 -1.84818359391275 -0.102854046160059 -0.691300720784361 -1.02402907215241 -1.02125705774578 4.51168361731187 -0.181291012957207 0.244598985735914 0.630202092660766 0.618691552155547 0.54387303887162 0.394236012303767 0.152514661694158 0.175535742704597 0.434522904072035 -0.578404660387279 0.11222776992589 0.428767633819425 0.601425741397718 0.141004121188939 0.0604303376524022 0.492075606598133 1.0042946590804 0.964007767312131 1.02156046983823 1.51651371156267 1.49349263055223 1.41291884701569 1.20572911792174 -0.158269931946768 -0.693510065439473 -0.940986686301692 -1.02731574009084 -0.940986686301692 -0.779839119228619 -0.739552227460351 -0.515096687608572 -0.129493580683719
MMP0306 -0.743247152519452 -0.597300438933814 -1.83730402047208 -0.200668547353424 -0.803463944918944 -1.1252422968443 -1.06812765589641 4.70232227346623 0.0675679229563139 0.240541805724477 0.456759159184682 0.521624365222743 0.554056968241774 0.61351674044333 0.305407011762539 0.0945950921388394 0.694598247990907 -0.240541805724477 0.327028747108559 0.478380894530702 0.781085189374988 0.689192814154401 -0.132433128994375 0.35946135012759 0.327028747108559 0.386488519310115 0.743247152519453 1.46757528661114 1.40811551440958 1.3216285730255 1.19730359478588 -0.213514636541952 -0.808112358557514 -0.975680807489172 -1.27838510233346 -1.22973619780491 -1.07297861654626 -0.85676126308606 -0.705409115663917 -0.213514636541952
MMP0600 -0.499999140624141 -0.304347302988608 -1.96746962383718 -0.751163290456324 -1.17563121307401 -1.46046400069024 -1.74799622931897 5.0083159245423 0.19021706436788 0.184782291100226 0.391303675271067 0.347825489129837 0.364129808932799 0.342390715862184 0.0326086396059223 0.0326086396059223 0.565216419835986 -0.233695250509109 0.135869331691343 0.33695594259453 0.298912529720954 0 -0.288042983185647 0.951085321839399 0.989128734712975 0.744563937668558 0.896737589162862 1.18478057234851 1.16304147927789 1.18478057234851 0.961954868374706 -0.228260477241456 -0.543477326765371 -0.586955512906601 -1.04347646738951 -0.934781002036438 -0.961954868374706 -0.668477111921406 -0.679346658456714 -0.249999570312071
MMP0720 -0.371309616756634 -0.392991930143883 -1.81916038725527 -0.423274137433964 -0.884490160484854 -1.23776548055817 -1.53719282954004 4.18080891638323 0.382150773450258 0.490562340386502 0.73448836599305 0.588132750629121 0.653179690790867 0.571871015588685 0.165327639577771 0.615235642363182 0.479721183692878 -1.3361725624892 -0.523085810467375 -0.322524411635324 0.159907061230959 0.23579515808633 -0.0514954942947157 0.669441425831304 0.821217619542045 0.566450437241872 0.398412508490695 0.653179690790867 0.750750101033486 0.853741089622918 0.897105716397415 -0.430935978571568 -0.458038870305629 -0.701964895912177 -1.3361725624892 -1.43916355107863 -1.33075198414239 -0.891685138050603 -0.929629186478288 -0.420094821877944
MMP0785 -0.326720241481221 -0.234252248609177 -2.30602645426296 -0.544308826930394 -1.12412519668127 -1.39552268256814 -1.79032483865296 5.02550984722578 0.443846365785809 0.628782351529896 0.782895672983302 0.856870067280937 0.789060205841438 0.764402074408893 0.400694635778855 0.37603650434631 0.351378372913766 -0.47466903007649 -0.00616453285813624 0.388365570062583 0.542478891515989 0.271239445757994 -0.0739743942976348 0.314391175764948 0.413023701495128 0.413023701495128 0.511656227225308 0.955502593011117 0.949338060152981 0.782895672983302 1.10961591446452 -0.203429584318496 -0.462339964360218 -0.579466088664806 -1.09112231589011 -1.02947698730875 -0.949338060152981 -0.943173527294844 -0.918515395862299 -0.191100518602223
MMP0863 0.0357012283075782 0.00324556620977984 -2.1578160317454 -0.335003287215712 -0.935084533616509 -1.68826368841645 -1.4011196308794 4.44923290796247 -0.236926333313928 0.223944068474809 0.347275584446443 0.347275584446443 0.288855392670405 0.412186908642039 0.366748981705122 0.230435200894368 0.126577082181414 -0.613412013648389 0.165523876698772 0.275873127831286 0.360257849285562 -0.00324556620977979 0.0811391552444959 0.730252397200463 0.613412013648389 0.58744748397015 0.970424296724171 1.34690997705863 1.30796318254127 1.53515281722586 1.39234790399555 -0.165523876698772 -1.05480901817845 -1.23006959350656 -0.970424296724171 -0.983406561563291 -0.7886725889765 -1.0937558126958 -0.730252397200463 -0.107103684922735
MMP1012 -0.327155197348316 -0.296956256054625 -1.60298102365852 -0.242241703489265 -0.695417445243448 -1.45464968261852 -1.70358573641907 5.09102010732851 0.025165784411409 0.548614100168715 0.609011982756096 0.61907829652066 0.568746727697842 0.47814990381677 -0.0251657844114089 0.296956256054626 0.206359432173553 -0.0754973532342268 0.286889942290062 0.347287824877443 0.296956256054626 0.0654310394696633 -0.427818334993952 -0.145961549586172 -0.33722151111288 -0.508348845110461 0.0553647257050997 0.61907829652066 0.941200336986694 1.10226135721971 1.00159821957408 -0.508348845110461 -0.679476179108041 -0.76000668922455 -1.30358763251098 -1.07206241592602 -1.04186347463233 -0.961332964515822 -1.12239398474884 -0.427818334993952
MMP1059 -0.66881404484564 -0.414957619064813 -1.62460909811833 -0.418961901506536 -1.1681561272228 -1.05808424462437 -1.37860064374052 5.22292030155758 0.346611658277667 0.258738280122766 0.268501988806644 0.385666493013179 0.366139075645423 0.219683445387254 0.219683445387254 0.19039231933562 0.0927552324968406 -0.0829915238129626 0.434485036432569 0.52235841458747 0.756687423000541 0.0244092717096949 -0.0244092717096949 0.229447154071132 0.0537003977613288 0.219683445387254 0.541885831955226 1.55731153507853 1.48896557429139 1.25463656587832 1.67447603928507 -0.14157377591623 -0.532122123271348 -0.727396296948907 -0.815269675103809 -0.678577753529518 -0.414957619064813 -0.825033383787687 -0.893379344574833 -0.14157377591623
MMP1331 -0.197207482461299 -0.485965814823689 -1.57847025995017 -1.06375056278423 -1.08411582994099 -1.56816345203863 -1.46348100758943 4.35030596107993 -0.122955339853827 0.594815372018399 0.636066562355883 0.825822037908311 0.957825846988261 0.966076085055757 0.751569895300839 0.314307277723506 0.223554658981041 -0.494216052891186 0.0833006118335941 0.240055135116034 0.421560372600965 -0.221958196663789 -0.527217005161173 0.48756227714094 0.363808706128487 0.0585498976311036 0.190553706711053 0.784570847570827 0.916574656650776 0.825822037908311 1.06507894186572 -0.56021795743116 -0.84897628979355 -0.947979146603513 -1.28623890737088 -1.15423509829093 -1.26148819316839 -1.40174224031584 -1.53374604939579 -0.461215100621198
MMP1332 -0.334034810371394 -0.527990506716075 -2.56469307384958 -0.898002277730925 -1.35130844106948 -2.01553577252939 -2.09849323148259 3.7768898411304 0.404074367384751 0.382523734457564 0.630356013120212 0.732721519524348 0.738109177756145 0.684232595438178 0.436400316775531 0.495664557325294 0.258607595126241 -0.511827532020685 0.0215506329271867 0.344810126834987 0.544153481411465 0.1616297469539 -0.280158228053427 0.495664557325294 0.587254747265838 0.544153481411465 0.630356013120212 0.942840190564419 0.959003165259809 0.996716772882386 0.996716772882386 -0.587254747265838 -0.856637658855672 -0.985941456418792 -1.2930379756312 -1.20144778569066 -1.11524525398191 -1.24993670977683 -1.15834651983629 -0.538765823179668
MMP1338 -0.871068789673651 -0.17421375793473 -1.55883403815665 0.232769316530806 -0.668791789876245 -1.10529083117843 -1.70558237496098 5.07846123747184 0.460422074541787 0.0995507188198458 0.217767197418413 0.485309754246748 0.267542556828336 0.205323357565932 -0.0435534394836825 -0.33598367601698 0.591082392992834 0.00622191992624035 0.796405750558767 0.765296150927565 0.983063348345977 0.273764476754576 -0.236432957197134 0.360871355721941 0.423090554984345 0.398202875279383 0.528863193730431 1.05772638746086 1.04528254760838 1.0328387077559 0.989285268272218 -0.223989117344653 -1.00795102805094 -0.927066069009814 -1.18216478598567 -1.15727710628071 -1.0017291081247 -1.13861134650199 -1.05150446753462 -0.130660318451048
[+] Show/hide bicluster #2 motif PSSM #1. bicluster 2 motif PSSM #1 Methanococcus maripaludis S2 10x4
POSITION A C G T
1 0 0.1 0.4 0.5
2 0.7 0.1 0 0.2
3 0 0 1 0
4 0 0 1 0
5 0 0 0.9 0.1
6 0.1 0 0.8 0.1
7 0.1 0 0.9 0
8 0.7 0 0 0.3
9 0.4 0 0.5 0.1
10 0 0 0.5 0.5 [+] Show/hide bicluster #2 motif PSSM #2. bicluster 2 motif PSSM #2 Methanococcus maripaludis S2 15x4
POSITION A C G T
1 0 0 1 0
2 1 0 0 0
3 0 0 1 0
4 0 0.666667 0 0.333333
5 0 0 0 1
6 0.333333 0.333333 0 0.333333
7 0.333333 0 0 0.666667
8 0 0.333333 0.666667 0
9 1 0 0 0
10 0 0 1 0
11 0.333333 0.666667 0 0
12 0 1 0 0
13 0 0.666667 0.333333 0
14 1 0 0 0
15 1 0 0 0 |