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SEQUENCES


Derived Proteins (FASTA format)

Genome Sequence (FASTA format)

RAW ANNOTATION INPUT DATA


The following files are data products from protein domain matching software. The files were loaded into the database and used in combination to annotate the proteins.

PFAM Search Summary (tab-delimited text)

TMHMM / SignalP (tab-delimited text)

Rosetta results (Mammoth Summary)

GENE COORDINATES


The following files contain gene names, start/stop coordinates, and directional orientation.

Main Chromosome Coordinates

PNRC100 Coordinates (Nomenclature)

PNRC200 Coordinates

IMAGES


Halobacterium NRC-1 Genome Map (PDF format)

Microarray Design


Spotted Expression Microarray Platform

PUBLISHED DATASETS


A predictive model for transcriptional control of physiology in a free living cell.

RNA expression data

Lambdas (tab-delimited text)

Log10 Ratios (tab-delimited text)

The anatomy of microbial cell state transitions in response to oxygen.

Protein data

p-Values (tab-delimited text)

Log10 Ratios (tab-delimited text)

RNA expression data

Lambdas (tab-delimited text)

Log10 Ratios (tab-delimited text)

General transcription factor specified global gene regulation in archaea.

Protein - DNA interactions (chIP-chip)

Lambdas (tab-delimited text)

Log10 Ratios (tab-delimited text)

RNA expression data

Lambdas (tab-delimited text)

Log10 Ratios (tab-delimited text)

An integrated systems approach for understanding cellular responses to gamma radiation.

Lambdas (tab-delimited text)

Log10 Ratios (tab-delimited text)

A systems view of haloarchaeal strategies to withstand stress from transition metals.

Lambdas (tab-delimited text)

Log10 Ratios (tab-delimited text)

Systems Level Insights Into the Stress Response to UV Radiation in the Halophilic Archaeon Halobacterium NRC-1.

Lambdas (tab-delimited text)

Log10 Ratios (tab-delimited text)