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News From Baliga Lab

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November 21, 2007 Firegoose paper published

Firegoose BMC Bioinformatics

The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications was published in BMC Bioinformatics.

The paper describes the Firegoose, a toolbar for the Firefox browser that allows data exchange between the Gaggle and popular bioinformatics websites and web services.

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October 30, 2007 New Gaggle API Released

On Monday, October 29th, 2007, we released a new version of the Gaggle API.

Gaggle users will not have to do anything special, except reinstall the Firegoose and R Goose if you use those. Instructions are provided on the Gaggle Homepage.

Goose developers should read about what's new in the new API, and how to get the source code.

To report a bug or feature request, use our issue tracking system.

To ask a question, use the Gaggle discussion groups.

Thanks! The Gaggle Team

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August 27, 2007 Gaggle Workshop brings together collaborators

Members of the Gaggle community met at the ISB in Seattle.

Participants represented Institute for Systems Biology, University of Washington, New York University, Ohio State University, University of Zurich, The University of Tennessee, Pacific Northwest National Laboratory, Oak Ridge National Laboratory, Battelle, Fred Hutchinson Cancer Research Center, and Dana-Farber Cancer Institute.

Please see the workshop 2007 website and wiki.

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July 26, 2007 Systems Biology and Sustainability

Right here in Seattle, at the Institute for Systems Biology, Dr. Nitin Baliga and his group are taking a systems level approach to understand how organisms respond to complex changes in their environment.

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May 17, 2007 With Repository Overload, Researchers try new ways to integrate

The problem is that there are many types, formats and dimensions of data, and, therefore as many or even more  types of software. Its a two-fold problem.

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May 15, 2007 Gaggle article appears in Genome Technology

Genome Technology gave the Gaggle framework a writeup in With Repository Overload, Researchers Try New Ways to Integrate.

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May 06, 2007 Highlights from "Managing the Data Explosion in Systems Biology"

At the December 2006 American Society for Cell Biology meeting, there was a Special Interest Subgroup entitled "Managing the Data Explosion in Systems Biology".

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November 11, 2006 Weaving a tapestry in eScience

It seems clear to me that the key to building effective eScience environments is doing just what this Gaggle of bioinformatics researchers have done: stitch together small best-of-breed modules into a cohesive whole, rather than build a monolithic application.

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April 18, 2006 Most influential publications in high-throughput screening (Gaggle)

Gaggle manuscript ranked in the top 100 (#49) "Most influential publications in high-throughput screening" in 2006

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March 28, 2006 Gaggle paper published in BMC Bioinformatics

BMC Bioinformatics published The Gaggle: An open-source software system for integrating bioinformatics software and data sources by Paul T Shannon, David J Reiss, Richard Bonneau and Nitin S Baliga.

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