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News From Baliga Lab

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August 11, 2010 Gaggle Genome Browser featured on OpenHelix blog

The OpenHelix blog features a screencast on the Gaggle Genome Browser:

Tip of the Week: Gaggle Genome Browser

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August 05, 2010 Introduction to Systems Biology Course 2010

The Introduction to Systems Biology course was held at ISB in Seattle the week of August 2, 2010. Topics covered included proteomics, DNA microarrays, and network inference integrating bench work with computational biology.

Data analysis was performed using Gaggle software tools.

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July 22, 2010 Gaggle Genome Browser paper published

 

The Gaggle Genome Browser joins heterogeneous data by their location on the genome to create information-rich visualizations yielding insight into genome organization, transcription and its regulation.

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July 13, 2010 Gaggle Tool Creator (GTC) published in Source Code for Biology and Medicine

 

A paper on the Gaggle Tool Creator (GTC) was published in Source Code for Biology and Medicine. GTC: A web server for integrating systems biology data with web tools and desktop applications.

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July 12, 2010 Dr. Baliga: VIZBI 2010 Talk Video

Nitin Baliga discusses visualization methods being used to explore biological networks or circuits.

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June 07, 2010 Our Recent Publication

Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis (BMC Sys Biol).

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March 19, 2010 Bob Fortner Refutes the Singularity

Robert Fortner presents hard data about life expectancy, medical progress, and more create a stark contrast to the claims of eternal life through the singularity. (Video)

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August 26, 2009 3rd Annual Gaggle Workshop

Thanks to all who participated in the third annual Gaggle Workshop (2009). It was the most successful workshop so far. We had two days of presentations and discussion and welcomed several new collaborators to the project.

Please visit the workshop wiki page where you will be able to see presentations from the workshop and other information.

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June 29, 2009 A Taskmaster Transcription Factor

"Researchers showed that a single transcription factor in a tiny, salt-loving archaeon coordinates the expression of more than 100 newly-obtained genes."

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June 29, 2009 Transcriptome structure paper published

Prevalence of transcription promoters within archaeal operons and coding sequences (Koide et al Molecular Systems Biology 5:285) provides an integrative analysis of transcriptome dynamics and protein–DNA interaction in H. salinarum using whole-genome tiling arrays and ChIP-chip.

Paper features Gaggle and our Genome Browser.

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