VNG00031 one-of-top-five-correct: 0.441712866319815 CThresh: 5.681097 75 best_is: cluster02 VNG00031 cluster00 -> 1e0cA1 7.3933143 144 / 92 conP: 0.245 CATH-ID: 3.40.250.10 Sulfurtransferase. Chain: a. Synonym: rhodanese. Engineered: yes VNG00031 cluster01 -> 1pfkA2 8.3627504 126 / 92 conP: 0.330 CATH-ID: 3.40.50.460 Phosphofructokinase (r-state) complex with fructose-1,6-bisphosphate a VNG00031 cluster02 -> 1bvyF0 9.1382993 152 / 92 conP: 0.336 CATH-ID: 3.40.50.360 Cytochrome p450 bm-3. Chain: a, b. Fragment: heme-binding domain. Engi VNG00031 cluster03 -> 1a6f00 6.5761849 113 / 92 conP: 0.245 CATH-ID: 3.30.230.10 Ribonuclease p protein. Chain: null. Synonym: rnase p protein. Enginee VNG00031 cluster04 -> 1scuA2 8.3627504 166 / 92 conP: 0.266 CATH-ID: 3.40.50.261 Succinyl-coa synthetase (succinate-coa ligase) (adp-forming) --end-- VNG00032 one-of-top-five-correct: 0.548372407417155 CThresh: 8.264111 25 best_is: cluster11 VNG00032 cluster00 -> 1quuA2 6.9486774 122 / 128 conP: 0.238 CATH-ID: 1.20.1040.10 Human skeletal muscle alpha-actinin 2. Chain: a. Fragment: spectrin-li VNG00032 cluster01 -> 1joyA0 8.5905865 67 / 128 conP: 0.404 CATH-ID: 1.20.15.210 Envz_ecoli. Chain: a, b. Fragment: residues 223-289. Engineered: yes VNG00032 cluster02 -> 1hwxA1 7.2132319 51 / 128 conP: 0.332 CATH-ID: 1.20.15.110 Glutamate dehydrogenase. Chain: a, b, c, d, e, f. Synonym: gdh. Ec: 1. VNG00032 cluster03 -> 1bf202 5.4292091 474 / 128 conP: 0.029 CATH-ID: 3.20.20.80 Isoamylase. Chain: null. Synonym: glycogen 6-glucanohydrolase. Ec: 3.2 VNG00032 cluster04 -> 1fewA0 8.2164582 173 / 128 conP: 0.254 CATH-ID: 1.20.1040.20 Second mitochondria-derived activator of caspases. Chain: a. Fragment: VNG00032 cluster11 -> 1qsdA0 10.662514 102 / 128 conP: 0.504 CATH-ID: 1.20.1040.50 Beta-tubulin binding post-chaperonin cofactor. Chain: a, b. Fragment: --end-- VNG00131 one-of-top-five-correct: 0.209460960314718 CThresh: 7.586021 25 best_is: cluster18 VNG00131 cluster00 -> 1aoa01 6.3304629 118 / 109 conP: 0.196 CATH-ID: 1.10.418.10 T-fimbrin. Chain: null. Fragment: abd1 VNG00131 cluster01 -> 1geo03 6.3518103 146 / 109 conP: 0.170 CATH-ID: 3.30.413.10 Sulfite reductase hemoprotein. Chain: null. Synonym: sirhp. Engineered VNG00131 cluster02 -> 3ecaA1 5.7358896 212 / 109 conP: 0.101 CATH-ID: 3.40.50.1170 Asparaginase type ii (eca) VNG00131 cluster03 -> 1fokA3 5.9188344 178 / 109 conP: 0.129 CATH-ID: 3.40.91.30 Foki restriction endonuclease. Chain: a. Synonym: r.Foki. Engineered: VNG00131 cluster04 -> 1deoA0 5.6153312 233 / 109 conP: 0.087 CATH-ID: 3.40.50.1110 Rhamnogalacturonan acetylesterase. Chain: a. Engineered: yes VNG00131 cluster18 -> 1nal10 6.6203106 291 / 109 conP: 0.080 CATH-ID: 3.20.20.70 N-acetylneuraminate lyase. Chain: 1, 2, 3, 4. Ec: 4.1.3.3 --end-- VNG0015h one-of-top-five-correct: 1 CThresh: best_is: --end-- VNG0016h one-of-top-five-correct: 1 CThresh: best_is: --end-- VNG0017h one-of-top-five-correct: 0.404821816274536 CThresh: 6.440728 75 best_is: cluster07 VNG0017h cluster00 -> 1kdxA0 6.0749720 81 / 97 conP: 0.244 CATH-ID: 1.10.246.20 Cbp. Chain: a. Fragment: kix, residues 586-666. Synonym: creb-binding VNG0017h cluster01 -> 1ckmA1 5.5208352 155 / 97 conP: 0.139 CATH-ID: 3.90.63.10 mRNA capping enzyme. Chain: a, b. Synonym: RNA guanylyltransferase. En VNG0017h cluster02 -> 1ii9A 8.7642388 544 / 97 conP: 0.024 NO-CATH VNG0017h cluster03 -> 1cr4A0 6.6655659 243 / 97 conP: 0.106 CATH-ID: 3.40.50.300 DNA primase/helicase. Chain: a. Fragment: helicase domain. Engineered: VNG0017h cluster04 -> 1ei1A2 7.0731521 173 / 97 conP: 0.181 CATH-ID: 3.30.970.10 DNA gyrase b. Chain: a, b. Fragment: n-terminal 43 kda fragment. Synon VNG0017h cluster07 -> 1f89A 8.9550273 271 / 97 conP: 0.158 NO-CATH --end-- VNG0018h one-of-top-five-correct: 0.463615649190424 CThresh: 5.806777 75 best_is: cluster09 VNG0018h cluster00 -> 1cii03 6.4466854 157 / 86 conP: 0.161 CATH-ID: 1.10.490.30 Colicin ia. Chain: null. Engineered: yes. Biological_unit: monomer VNG0018h cluster01 -> 1gln04 6.5165790 48 / 86 conP: 0.322 CATH-ID: 1.10.8.70 Glutamyl-tRNA synthetase. Chain: null VNG0018h cluster02 -> 1cf9A2 6.4075213 121 / 86 conP: 0.203 CATH-ID: 1.10.422.10 Catalase hpii. Chain: a, b, c, d. Engineered: yes. Mutation: yes VNG0018h cluster03 -> 1e5rA 6.7134951 260 / 86 conP: 0.082 NO-CATH VNG0018h cluster04 -> 2bct00 6.1604880 502 / 86 conP: 0.011 CATH-ID: 1.25.30.10 Beta-catenin. Chain: null. Fragment: armadillo repeat region. Engineer VNG0018h cluster09 -> 1cf9A2 9.5739693 121 / 86 conP: 0.388 CATH-ID: 1.10.422.10 Catalase hpii. Chain: a, b, c, d. Engineered: yes. Mutation: yes --end-- VNG00212 one-of-top-five-correct: 0.505361213886948 CThresh: 4.565367 75 best_is: cluster18 VNG00212 cluster00 -> 1he8A3 7.5068212 111 / 92 conP: 0.357 CATH-ID: 1.25.40.70 Phosphatidylinositol 3-kinase catalytic subunit, gamma isoform. Synony VNG00212 cluster01 -> 1fjgB2 6.0362253 62 / 92 conP: 0.345 CATH-TRUNC VNG00212 cluster02 -> 1he8A3 7.4146722 111 / 92 conP: 0.351 CATH-ID: 1.25.40.70 Phosphatidylinositol 3-kinase catalytic subunit, gamma isoform. Synony VNG00212 cluster03 -> 1fts01 6.6534932 84 / 92 conP: 0.347 CATH-ID: 1.20.120.140 Ftsy. Chain: null. Fragment: ng-domain residues 197 - 497. Engineered: VNG00212 cluster04 -> 1elrA0 6.9491676 128 / 92 conP: 0.293 CATH-ID: 1.25.40.10 Tpr2a-domain of hop. Chain: a. Fragment: middle domain. Engineered: ye VNG00212 cluster18 -> 1elkA0 9.3321865 153 / 92 conP: 0.405 CATH-ID: 1.25.40.90 Target of myb1. Chain: a, b. Fragment: vhs domain. Engineered: yes. Mu --end-- VNG0024h one-of-top-five-correct: 0.508472001365899 CThresh: 6.970968 42 best_is: cluster17 VNG0024h cluster00 -> 1hstA0 5.9877353 74 / 105 conP: 0.244 CATH-ID: 1.10.10.10 Histone h5 (globular domain) VNG0024h cluster01 -> 1e7aA3 7.8857519 92 / 105 conP: 0.331 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG0024h cluster02 -> 1cpq00 5.2615466 129 / 105 conP: 0.153 CATH-ID: 1.20.120.10 Cytochrome c'. Chain: null VNG0024h cluster03 -> 1c17M0 5.4557231 142 / 105 conP: 0.150 CATH-ID: 1.20.120.220 Atp synthase subunit c. Chain: a, b, c, d, e, f, g, h, i, j, k, l. Eng VNG0024h cluster04 -> 1ggqA0 7.0098632 162 / 105 conP: 0.194 CATH-ID: 1.20.120.240 Outer surface protein c. Chain: a, b, c, d. Fragment: residues 38-210. VNG0024h cluster17 -> 1j8mF1 10.161207 87 / 105 conP: 0.496 CATH-ID: 1.20.120.140 Signal recognition 54 kda protein. Chain: f. Fragment: g-domain, gtpas --end-- VNG0025h one-of-top-five-correct: 0.418138500898529 CThresh: 6.048481 75 best_is: cluster12 VNG0025h cluster00 -> 2occC2 7.5949393 191 / 86 conP: 0.161 CATH-ID: 1.20.120.80 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, VNG0025h cluster01 -> 2occA0 7.4980313 514 / 86 conP: 0.013 CATH-ID: 1.20.210.10 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, VNG0025h cluster02 -> 1rlr03 7.1991333 299 / 86 conP: 0.066 CATH-ID: 3.90.244.10 Ribonucleotide reductase protein r1. Chain: null. Synonym: ribonucleos VNG0025h cluster03 -> 1azsA0 7.3970363 190 / 86 conP: 0.155 CATH-ID: 3.50.6.10 Vc1. Chain: a. Fragment: c1a domain of adenylyl cyclase. Engineered: y VNG0025h cluster04 -> 1ekjA0 6.2096183 210 / 86 conP: 0.099 CATH-ID: 3.40.1050.10 Beta-carbonic anhydrase. Chain: a, b, c, d, e, f, g, h. Ec: 4.2.1.1 VNG0025h cluster12 -> 1a0b00 9.1781633 117 / 86 conP: 0.356 CATH-ID: 1.20.120.160 Aerobic respiration control sensor protein arcb. Chain: null. Fragment --end-- VNG00260 one-of-top-five-correct: 0.224279541156127 CThresh: 7.395506 25 best_is: cluster17 VNG00260 cluster00 -> 1d5aA3 4.6089956 163 / 104 conP: 0.097 CATH-ID: 3.30.70.510 DNA polymerase. Chain: a. Engineered: yes VNG00260 cluster01 -> 1mdl01 4.6753983 126 / 104 conP: 0.123 CATH-ID: 3.30.390.10 Mandelate racemase. Chain: null. Engineered: yes. Mutation: k166r VNG00260 cluster02 -> 1dfmA0 5.4124965 218 / 104 conP: 0.085 CATH-ID: 3.40.91.20 Endonuclease bglii. Chain: a, b. Fragment: bglii. Engineered: yes. Mut VNG00260 cluster03 -> 1qlmA2 5.1067499 198 / 104 conP: 0.089 CATH-ID: 3.30.1030.10 Methenyltetrahydromethanopterin cyclohydrolase. Chain: a. Engineered: VNG00260 cluster04 -> 1mml02 4.8596728 146 / 104 conP: 0.114 CATH-ID: 3.30.70.270 Mmlv reverse transcriptase. Chain: null. Engineered: yes VNG00260 cluster17 -> 1icxA 6.8866928 155 / 104 conP: 0.179 NO-CATH --end-- VNG00261 one-of-top-five-correct: 0.151505506222591 CThresh: 8.588316 25 best_is: cluster02 VNG00261 cluster00 -> 1qpg01 4.9359536 186 / 120 conP: 0.092 CATH-ID: 3.40.50.1260 3-phosphoglycerate kinase. Chain: null. Synonym: pgk. Engineered: yes. VNG00261 cluster01 -> 2dri02 4.7623713 146 / 120 conP: 0.108 CATH-ID: 3.40.50.2400 D-ribose-binding protein complexed with beta-d-ribose VNG00261 cluster02 -> 1grkA 5.7439705 412 / 120 conP: 0.033 NO-CATH VNG00261 cluster03 -> 1mat00 5.1536138 263 / 120 conP: 0.064 CATH-ID: 3.90.230.10 Methionine aminopeptidase VNG00261 cluster04 -> 1fokA3 5.2207944 178 / 120 conP: 0.103 CATH-ID: 3.40.91.30 Foki restriction endonuclease. Chain: a. Synonym: r.Foki. Engineered: --end-- VNG0030h one-of-top-five-correct: 0.182865828412923 CThresh: 9.535950 25 best_is: cluster18 VNG0030h cluster00 -> 1fna00 5.6749166 91 / 130 conP: 0.164 CATH-ID: 2.60.40.30 Fibronectin cell-adhesion module type iii-10 VNG0030h cluster01 -> 1csn01 5.7319448 82 / 130 conP: 0.173 CATH-ID: 3.30.200.20 Casein kinase-1. Heterogen: mg-atp VNG0030h cluster02 -> 1cb8A3 5.7566277 110 / 130 conP: 0.154 CATH-ID: 2.60.220.10 Chondroitinase ac. Chain: a. Ec: 4.2.2.5 VNG0030h cluster03 -> 1e8mA2 6.1372713 353 / 130 conP: 0.052 CATH-ID: 2.130.10.40 Prolyl endopeptidase. Chain: a. Synonym: prolyl endopeptidase, post-pr VNG0030h cluster04 -> 1ospO2 5.9364206 76 / 130 conP: 0.187 CATH-ID: 2.20.50.10 Fab 184.1. Chain: l, h. Outer surface protein a. Chain: o. Synonym: os VNG0030h cluster18 -> 1howA1 6.5641453 91 / 130 conP: 0.202 CATH-ID: 3.30.200.20 Serine/threonine-protein kinase ymr216c. Chain: a. Fragment: sky1pdelt --end-- VNG0032h one-of-top-five-correct: 0.160360769998173 CThresh: 9.805534 25 best_is: cluster18 VNG0032h cluster00 -> 1rypA0 4.6468366 243 / 126 conP: 0.054 CATH-ID: 3.60.20.10 20s proteasome. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, VNG0032h cluster01 -> 1apyB0 6.2224337 141 / 126 conP: 0.136 CATH-ID: 3.50.11.10 Aspartylglucosaminidase. Chain: a, b, c, d. Synonym: aga, glycosylaspa VNG0032h cluster02 -> 1fi8C 4.4717721 78 / 126 conP: 0.119 NO-CATH VNG0032h cluster03 -> 1gxpA 4.6335618 103 / 126 conP: 0.109 NO-CATH VNG0032h cluster04 -> 1a0i01 4.3921619 230 / 126 conP: 0.053 CATH-ID: 3.90.410.10 DNA ligase. Chain: null. Engineered: yes. Mutation: m2v VNG0032h cluster18 -> 1qckA0 6.3435945 89 / 126 conP: 0.178 CATH-ID: 1.10.150.40 Barrier-to-autointegration factor. Chain: a, b. Engineered: yes --end-- VNG00350 one-of-top-five-correct: 0.505991718739041 CThresh: 5.678778 75 best_is: cluster07 VNG00350 cluster00 -> 1kiyA 7.8140213 354 / 103 conP: 0.096 NO-CATH VNG00350 cluster01 -> 1ithA0 8.9379983 141 / 103 conP: 0.385 CATH-ID: 1.10.490.10 Hemoglobin (cyanomet) VNG00350 cluster02 -> 1flp00 7.2819594 142 / 103 conP: 0.279 CATH-ID: 1.10.490.10 Hemoglobin i (monomeric) (ferric) VNG00350 cluster03 -> 1hbg00 6.2444155 147 / 103 conP: 0.217 CATH-ID: 1.10.490.10 Hemoglobin (carbon monoxy) VNG00350 cluster04 -> 1hbg00 7.2402890 147 / 103 conP: 0.269 CATH-ID: 1.10.490.10 Hemoglobin (carbon monoxy) VNG00350 cluster07 -> 1dlwA0 9.5935607 116 / 103 conP: 0.473 CATH-ID: 1.10.490.10 Hemoglobin. Chain: a. Engineered: yes --end-- VNG0037h one-of-top-five-correct: 0.251612217979915 CThresh: 6.405350 75 best_is: cluster01 VNG0037h cluster00 -> 1kmjA 5.9636418 404 / 81 conP: 0.015 NO-CATH VNG0037h cluster01 -> 1ljwA 7.3743731 141 / 81 conP: 0.184 NO-CATH VNG0037h cluster02 -> 1cvl00 5.3590426 316 / 81 conP: 0.027 CATH-ID: 3.40.50.950 Triacylglycerol hydrolase. Chain: null. Other_details: chain break fro VNG0037h cluster03 -> 1bs2A2 5.1921525 125 / 81 conP: 0.121 CATH-ID: 1.20.1010.10 Arginyl-tRNA synthetase. Chain: a. Synonym: argrs, arginine - tRNA lig VNG0037h cluster04 -> 1fit00 6.3667079 124 / 81 conP: 0.163 CATH-ID: 3.30.428.10 Fragile histidine protein. Chain: null. Synonym: fhit, fragile histidi --end-- VNG0038h one-of-top-five-correct: 0.184388579606197 CThresh: 6.096533 75 best_is: cluster04 VNG0038h cluster00 -> 1doqA0 5.9943100 69 / 83 conP: 0.237 CATH-ID: 1.10.359.10 RNA polymerase alpha subunit. Chain: a. Fragment: c-terminal domain. E VNG0038h cluster01 -> 1eemA2 5.2541235 115 / 83 conP: 0.145 CATH-ID: 1.20.1050.10 Glutathione-s-transferase. Chain: a. Engineered: yes VNG0038h cluster02 -> 1qhaA2 5.3921504 261 / 83 conP: 0.049 CATH-ID: 3.40.367.20 Hexokinase. Chain: a, b. Engineered: yes. Other_details: complexed wit VNG0038h cluster03 -> 1sbp01 5.6182475 151 / 83 conP: 0.122 CATH-ID: 3.40.190.10 Sulfate-binding protein VNG0038h cluster04 -> 2azoA 6.1023505 218 / 83 conP: 0.083 NO-CATH --end-- VNG0039h one-of-top-five-correct: 0.50280251242925 CThresh: 6.924337 75 best_is: cluster04 VNG0039h cluster00 -> 1bi2B1 9.3581913 73 / 110 conP: 0.478 CATH-ID: 1.10.10.10 Diphtheria toxin repressor. Chain: a, b. Synonym: dtxr. Engineered: ye VNG0039h cluster01 -> 1bia01 8.5992039 64 / 110 conP: 0.438 CATH-ID: 1.10.10.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG0039h cluster02 -> 1bjaA0 9.2769042 95 / 110 conP: 0.438 CATH-ID: 1.10.10.10 Transcription regulatory protein mota. Chain: a, b. Fragment: n-termin VNG0039h cluster03 -> 1ecl02 6.3277160 166 / 110 conP: 0.175 CATH-ID: 1.10.460.10 Escherichia coli topoisomerase i. Domain: amino-terminal 67kda. Synony VNG0039h cluster04 -> 1bi2B1 9.9641165 73 / 110 conP: 0.522 CATH-ID: 1.10.10.10 Diphtheria toxin repressor. Chain: a, b. Synonym: dtxr. Engineered: ye --end-- VNG0041c one-of-top-five-correct: 0.181290807465895 CThresh: 7.485339 25 best_is: cluster01 VNG0041c cluster00 -> 1b3jA1 4.2379799 170 / 100 conP: 0.077 CATH-ID: 3.30.500.10 Mhc class i homolog mic-a. Chain: a. Fragment: extracellular domain, r VNG0041c cluster01 -> 1sfe01 6.2883315 81 / 100 conP: 0.219 CATH-ID: 3.30.160.70 Ada o6-methylguanine-DNA methyltransferase. Chain: null. Fragment: c-t VNG0041c cluster02 -> 1bbpA0 4.6922882 173 / 100 conP: 0.085 CATH-ID: 2.40.128.20 Bilin binding protein ( BBP ) VNG0041c cluster03 -> 1hocA1 4.5089882 181 / 100 conP: 0.077 CATH-ID: 3.30.500.10 Murine class i major histocompatibility complex consisting of h-2d==b= VNG0041c cluster04 -> 1b34B0 5.3663613 74 / 100 conP: 0.185 CATH-ID: 2.30.30.140 Small nuclear ribonucleoprotein sm d1. Chain: a. Small nuclear ribonuc --end-- VNG00421 one-of-top-five-correct: 0.228932577769391 CThresh: 7.393545 25 best_is: cluster16 VNG00421 cluster00 -> 1tlfA1 6.5080634 131 / 105 conP: 0.189 CATH-ID: 3.40.50.2300 Tryptic core fragment of the lactose repressor of escherichia coli VNG00421 cluster01 -> 1cfe00 5.4884711 135 / 105 conP: 0.145 CATH-ID: 3.40.33.10 Pathogenesis-related protein p14a. Chain: null. Fragment: residues 1 - VNG00421 cluster02 -> 1gtxA1 6.4511627 167 / 105 conP: 0.153 CATH-ID: 3.30.70.160 4-aminobutyrate aminotransferase. Chain: a, b, c, d. Synonym: gaba-at. VNG00421 cluster03 -> 1pxtA2 5.7062288 156 / 105 conP: 0.135 CATH-ID: 3.40.47.20 Peroxisomal 3-ketoacyl-coa thiolase VNG00421 cluster04 -> 1mbe00 6.3921978 52 / 105 conP: 0.276 CATH-ID: 1.10.10.60 Myb proto-oncogene protein. Domain: DNA-binding domain repeat 1. Other VNG00421 cluster16 -> 1efuA1 6.9357173 172 / 105 conP: 0.167 CATH-ID: 3.40.50.300 Elongation factor tu. Chain: a, c. Synonym: elongation factor for tran --end-- VNG0043h one-of-top-five-correct: 0.536834970333865 CThresh: 6.210790 75 best_is: cluster04 VNG0043h cluster00 -> 1g71A 8.7161114 344 / 129 conP: 0.201 NO-CATH VNG0043h cluster01 -> 1f5aA1 8.4011851 103 / 129 conP: 0.459 CATH-ID: 3.30.70.590 Poly(a) polymerase. Chain: a. Fragment: c-terminal deletion mutant mis VNG0043h cluster02 -> 1fjgC1 7.5293592 91 / 129 conP: 0.413 CATH-TRUNC VNG0043h cluster03 -> 1g71A 8.5412408 344 / 129 conP: 0.193 NO-CATH VNG0043h cluster04 -> 1qf6A2 9.5812735 106 / 129 conP: 0.539 CATH-ID: 3.30.980.10 Threonyl-tRNA synthetase. Chain: a. Synonym: thrrs. Threonine tRNA. Ch --end-- VNG00440 one-of-top-five-correct: 0.425776925362285 CThresh: 6.971868 53 best_is: cluster16 VNG00440 cluster00 -> 1cuk02 7.6584133 76 / 103 conP: 0.335 CATH-ID: 1.10.150.30 Ruva protein. Chain: null. Engineered: yes VNG00440 cluster01 -> 2end00 7.4879299 137 / 103 conP: 0.240 CATH-ID: 1.10.440.10 Endonuclease v VNG00440 cluster02 -> 1fbaA0 5.4832642 360 / 103 conP: 0.038 CATH-ID: 3.20.20.70 Fructose-1,6-bisphosphate aldolase VNG00440 cluster03 -> 1cf7A0 6.9764854 67 / 103 conP: 0.305 CATH-ID: 1.10.10.10 Transcription factor e2f-4. Chain: a. Fragment: DNA-binding domain. En VNG00440 cluster04 -> 1bi2B1 6.8541389 73 / 103 conP: 0.289 CATH-ID: 1.10.10.10 Diphtheria toxin repressor. Chain: a, b. Synonym: dtxr. Engineered: ye VNG00440 cluster16 -> 1a0p01 9.2955653 91 / 103 conP: 0.422 CATH-ID: 1.10.150.130 Site-specific recombinase xerd. Chain: null. Engineered: yes --end-- VNG00490 one-of-top-five-correct: 0.40881767334497 CThresh: 2.491415 100 best_is: cluster03 VNG00490 cluster00 -> 1gdj00 5.9113534 153 / 54 conP: 0.121 CATH-ID: 1.10.490.10 Leghemoglobin (deoxy) VNG00490 cluster01 -> 2bct00 5.6836457 502 / 54 conP: 0.001 CATH-ID: 1.25.30.10 Beta-catenin. Chain: null. Fragment: armadillo repeat region. Engineer VNG00490 cluster02 -> 1pdnC1 5.8610214 68 / 54 conP: 0.291 CATH-ID: 1.10.10.10 Prd paired domain. Chain: c. DNA. Chain: a, b VNG00490 cluster03 -> 1k62A 8.1884300 450 / 54 conP: 0.006 NO-CATH VNG00490 cluster04 -> 1vhbA0 6.1390610 135 / 54 conP: 0.157 CATH-ID: 1.10.490.10 Hemoglobin. Chain: a, b. Synonym: soluble cytochrome o. Engineered: ye --end-- VNG00492 one-of-top-five-correct: 0.434769723176852 CThresh: 6.062153 75 best_is: cluster12 VNG00492 cluster00 -> 1dbqA1 7.7659720 134 / 99 conP: 0.287 CATH-ID: 3.40.50.2200 Purine repressor. Chain: a, b. Fragment: corepressor-free corepressor- VNG00492 cluster01 -> 1pymA0 7.1786702 284 / 99 conP: 0.105 CATH-ID: 3.20.20.270 Phosphoenolpyruvate mutase. Chain: a, b. Synonym: phosphoenolpyruvate VNG00492 cluster02 -> 3crd00 7.1545369 100 / 99 conP: 0.301 CATH-ID: 1.10.533.10 Raidd. Chain: null. Fragment: card domain. Engineered: yes VNG00492 cluster03 -> 1chrA2 7.3682759 202 / 99 conP: 0.182 CATH-ID: 3.20.20.120 Chloromuconate cycloisomerase VNG00492 cluster04 -> 1i9cA 8.1266986 137 / 99 conP: 0.305 NO-CATH VNG00492 cluster12 -> 1tlfA1 9.0745110 131 / 99 conP: 0.375 CATH-ID: 3.40.50.2300 Tryptic core fragment of the lactose repressor of escherichia coli --end-- VNG00500 one-of-top-five-correct: 0.341548319893489 CThresh: 6.971060 53 best_is: cluster19 VNG00500 cluster00 -> 1c9bA2 7.7966257 106 / 111 conP: 0.322 CATH-ID: 1.10.472.10 General transcription factor iib. Chain: a, e, i, m, q. Fragment: c-te VNG00500 cluster01 -> 1qaxA2 7.0381593 260 / 111 conP: 0.126 CATH-ID: 3.90.770.10 3-hydroxy-3-methylglutaryl-coenzyme a reductase. Chain: a, b. Engineer VNG00500 cluster02 -> 1a0b00 7.8595880 117 / 111 conP: 0.311 CATH-ID: 1.20.120.160 Aerobic respiration control sensor protein arcb. Chain: null. Fragment VNG00500 cluster03 -> 1rmi_ 6.1515051 160 / 111 conP: 0.174 NO-CATH VNG00500 cluster04 -> 1azsA0 7.6940158 190 / 111 conP: 0.214 CATH-ID: 3.50.6.10 Vc1. Chain: a. Fragment: c1a domain of adenylyl cyclase. Engineered: y VNG00500 cluster19 -> 1brrA0 8.1349060 230 / 111 conP: 0.193 CATH-ID: 1.20.85.10 Bacteriorhodopsin. Chain: a, b, c. Synonym: br. Other_details: schiff --end-- VNG00511 one-of-top-five-correct: 0.511665389744993 CThresh: 3.000753 82 best_is: cluster03 VNG00511 cluster00 -> 1ddbA0 7.1396865 195 / 66 conP: 0.149 CATH-ID: 1.10.437.10 Bid. Chain: a. Engineered: yes. Biological_unit: monomer VNG00511 cluster01 -> 1b3uA0 7.1396865 588 / 66 conP: 0.003 CATH-ID: 1.25.30.30 Protein phosphatase pp2a. Chain: a, b. Fragment: 65 kd regulatory subu VNG00511 cluster02 -> 1ddbA0 8.8548983 195 / 66 conP: 0.223 CATH-ID: 1.10.437.10 Bid. Chain: a. Engineered: yes. Biological_unit: monomer VNG00511 cluster03 -> 1ddbA0 9.2837013 195 / 66 conP: 0.245 CATH-ID: 1.10.437.10 Bid. Chain: a. Engineered: yes. Biological_unit: monomer VNG00511 cluster04 -> 1ddbA0 8.2116939 195 / 66 conP: 0.193 CATH-ID: 1.10.437.10 Bid. Chain: a. Engineered: yes. Biological_unit: monomer --end-- VNG0055h one-of-top-five-correct: 0.208188635465233 CThresh: 6.860730 75 best_is: cluster18 VNG0055h cluster00 -> 1jftA 4.7264832 340 / 87 conP: 0.021 NO-CATH VNG0055h cluster01 -> 1dmuA0 6.1796227 299 / 87 conP: 0.044 CATH-ID: 3.40.600.20 Bgli restriction endonuclease. Chain: a. Engineered: yes. DNA (5'- d( VNG0055h cluster02 -> 1a8y02 5.5089962 102 / 87 conP: 0.155 CATH-ID: 3.40.30.10 Calsequestrin. Chain: null VNG0055h cluster03 -> 1el6A3 5.7852042 109 / 87 conP: 0.158 CATH-ID: 3.30.70.570 Baseplate structural protein gp11. Chain: a, b, c. Engineered: yes VNG0055h cluster04 -> 1dm0A 4.6534971 264 / 87 conP: 0.038 NO-CATH VNG0055h cluster18 -> 2trcP1 6.7712505 131 / 87 conP: 0.173 CATH-ID: 3.40.30.10 Transducin. Chain: b, g. Fragment: lys-c resistant fragment, the gamma --end-- VNG00562 one-of-top-five-correct: 0.368145675550649 CThresh: 1.735376 100 best_is: cluster01 VNG00562 cluster00 -> 1c3d00 7.4448570 294 / 51 conP: 0.031 CATH-ID: 1.50.10.40 C3d. Chain: null. Engineered: yes. Mutation: c17a. Biological_unit: mo VNG00562 cluster01 -> 1bgeA0 7.4448570 159 / 51 conP: 0.170 CATH-ID: 1.20.120.200 Granulocyte colony-stimulating factor (form ii rcg-csfii) VNG00562 cluster02 -> 1k92A 7.4448570 444 / 51 conP: 0.004 NO-CATH VNG00562 cluster03 -> 2occC1 6.9816067 70 / 51 conP: 0.378 CATH-ID: 1.20.15.40 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, VNG00562 cluster04 -> 1fjgT0 7.2132319 99 / 51 conP: 0.304 CATH-TRUNC --end-- VNG00563 one-of-top-five-correct: 0.434772215419968 CThresh: 5.588788 75 best_is: cluster03 VNG00563 cluster00 -> 2tpt01 7.6996910 107 / 102 conP: 0.357 CATH-ID: 1.20.970.10 Thymidine phosphorylase. Chain: null. Biological_unit: dimer. Other_de VNG00563 cluster01 -> 2sas00 6.5289834 185 / 102 conP: 0.188 CATH-ID: 1.10.238.10 Sarcoplasmic calcium-binding protein (iso type ii) VNG00563 cluster02 -> 2tpt01 7.7995183 107 / 102 conP: 0.364 CATH-ID: 1.20.970.10 Thymidine phosphorylase. Chain: null. Biological_unit: dimer. Other_de VNG00563 cluster03 -> 14psA0 8.7915516 226 / 102 conP: 0.252 CATH-ID: 1.20.190.20 14-3-3 protein zeta/delta. Chain: a, b. Engineered: yes. Biological_un VNG00563 cluster04 -> 1bkdS2 7.2805345 242 / 102 conP: 0.163 CATH-ID: 1.10.840.10 H-ras. Chain: r. Fragment: residues 1-166. Synonym: p21. Engineered: y --end-- VNG00592 one-of-top-five-correct: 0.468641303449066 CThresh: 2.271444 100 best_is: cluster13 VNG00592 cluster00 -> 1pgjA2 7.8193678 258 / 64 conP: 0.104 CATH-ID: 1.10.570.10 6-phosphogluconate dehydrogenase. Chain: a, b. Synonym: 6pgdh, 6-pgdh. VNG00592 cluster01 -> 1flp00 7.8777034 142 / 64 conP: 0.297 CATH-ID: 1.10.490.10 Hemoglobin i (monomeric) (ferric) VNG00592 cluster02 -> 1msk02 6.0482376 88 / 64 conP: 0.310 CATH-ID: 1.10.288.10 Cobalamin-dependent methionine synthase. Chain: null. Fragment: activa VNG00592 cluster03 -> 1d8bA0 5.7975549 81 / 64 conP: 0.311 CATH-ID: 1.10.150.80 Sgs1 recq helicase. Chain: a. Fragment: hrdc domain. Engineered: yes VNG00592 cluster04 -> 1qqiA0 7.5290686 104 / 64 conP: 0.366 CATH-ID: 1.10.10.10 Phosphate regulon transcriptional regulatory protein phob. Chain: a. F VNG00592 cluster13 -> 1ddbA0 8.5268940 195 / 64 conP: 0.222 CATH-ID: 1.10.437.10 Bid. Chain: a. Engineered: yes. Biological_unit: monomer --end-- VNG00601 one-of-top-five-correct: 0.495181988463826 CThresh: 2.520406 100 best_is: cluster18 VNG00601 cluster00 -> 1e5rA 7.4780739 260 / 73 conP: 0.129 NO-CATH VNG00601 cluster01 -> 1babA0 7.2700956 142 / 73 conP: 0.301 CATH-ID: 1.10.490.10 Hemoglobin thionville alpha chain mutant with val 1 replaced by glu an VNG00601 cluster02 -> 1mroA3 6.2309810 227 / 73 conP: 0.124 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: VNG00601 cluster03 -> 1dlwA0 6.8541389 116 / 73 conP: 0.329 CATH-ID: 1.10.490.10 Hemoglobin. Chain: a. Engineered: yes VNG00601 cluster04 -> 1acf00 8.3099873 125 / 73 conP: 0.406 CATH-ID: 3.30.450.30 Profilin i VNG00601 cluster18 -> 1babA0 8.7259440 142 / 73 conP: 0.396 CATH-ID: 1.10.490.10 Hemoglobin thionville alpha chain mutant with val 1 replaced by glu an --end-- VNG00621 one-of-top-five-correct: 0.494590781258832 CThresh: 3.006686 92 best_is: cluster00 VNG00621 cluster00 -> 1hd2A0 9.1221657 161 / 65 conP: 0.301 CATH-ID: 3.40.30.10 Peroxiredoxin 5 residues 54-214. Chain: a. Synonym: prdx5, prxv, aoeb1 VNG00621 cluster01 -> 8rucA2 8.5501982 313 / 65 conP: 0.066 CATH-ID: 3.20.20.110 Ribulose-1,5-bisphosphate carboxylase/oxygenase. Chain: a, c, e, g, i, VNG00621 cluster02 -> 1kv5A 7.8298290 249 / 65 conP: 0.103 NO-CATH VNG00621 cluster03 -> 1fdr02 7.8298290 152 / 65 conP: 0.246 CATH-ID: 3.40.50.80 Flavodoxin reductase. Chain: null. Synonym: ferredoxin reductase. Engi VNG00621 cluster04 -> 1hf2A 8.9067762 196 / 65 conP: 0.217 NO-CATH --end-- VNG0066h one-of-top-five-correct: 0.390670539403027 CThresh: 3.114769 75 best_is: cluster16 VNG0066h cluster00 -> 1bl0A1 6.4967938 56 / 75 conP: 0.414 CATH-ID: 1.10.10.60 DNA (5'- d( Gp Gp Gp Gp Ap Tp Tp Tp Ap Gp Cp Ap Ap Ap Ap Cp Gp Tp Gp G VNG0066h cluster01 -> 1e01A0 5.5025069 48 / 75 conP: 0.364 CATH-ID: 3.10.350.10 Membrane-bound lytic murein transglycosylase d. Synonym: mltd, murein VNG0066h cluster02 -> 1hhsA 5.7615593 664 / 75 conP: 0.002 NO-CATH VNG0066h cluster03 -> 1gln05 6.7789856 98 / 75 conP: 0.341 CATH-ID: 1.10.10.350 Glutamyl-tRNA synthetase. Chain: null VNG0066h cluster04 -> 2eiaA1 5.9538435 132 / 75 conP: 0.229 CATH-ID: 1.10.375.10 Eiav capsid protein p26. Chain: a, b. Engineered: yes VNG0066h cluster16 -> 1b9nA1 7.7858819 102 / 75 conP: 0.400 CATH-ID: 1.10.10.10 Mode. Chain: a, b. Engineered: yes --end-- VNG0067h one-of-top-five-correct: 0.303972959366841 CThresh: 5.944940 75 best_is: cluster05 VNG0067h cluster00 -> 1vhh00 5.9535469 157 / 88 conP: 0.144 CATH-ID: 3.30.70.540 Sonic hedgehog. Chain: null. Domain: amino-terminal domain (residues 3 VNG0067h cluster01 -> 1c3cA1 5.7506580 91 / 88 conP: 0.212 CATH-ID: 1.10.275.10 Adenylosuccinate lyase. Chain: a, b. Engineered: yes VNG0067h cluster02 -> 1b25A2 6.3001248 178 / 88 conP: 0.136 CATH-ID: 1.10.569.10 Formaldehyde ferredoxin oxidoreductase. Chain: a, b, c, d. Fragment: d VNG0067h cluster03 -> 1i4fA 5.3639700 275 / 88 conP: 0.053 NO-CATH VNG0067h cluster04 -> 1bu2A2 5.9227623 102 / 88 conP: 0.206 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG0067h cluster05 -> 1jkw02 7.7222776 101 / 88 conP: 0.305 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y --end-- VNG0068h one-of-top-five-correct: 0.36655000354394 CThresh: 1.193308 100 best_is: cluster06 VNG0068h cluster00 -> 1k1aA 6.4665934 228 / 52 conP: 0.068 NO-CATH VNG0068h cluster01 -> 1sw6A0 6.9271692 254 / 52 conP: 0.055 CATH-ID: 1.25.40.20 Regulatory protein swi6. Chain: a, b. Fragment: ankyrin-repeat domain. VNG0068h cluster02 -> 1qsaA2 6.2363054 70 / 52 conP: 0.363 CATH-ID: 1.10.1240.20 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein VNG0068h cluster03 -> 1k1aA 6.0060175 228 / 52 conP: 0.060 NO-CATH VNG0068h cluster04 -> 1ap700 6.0060175 168 / 52 conP: 0.125 CATH-ID: 1.25.40.20 P19-ink4d. Chain: null. Synonym: cyclin dependent kinase 4 inhibitor d VNG0068h cluster06 -> 1sw6A0 7.1574571 254 / 52 conP: 0.059 CATH-ID: 1.25.40.20 Regulatory protein swi6. Chain: a, b. Fragment: ankyrin-repeat domain. --end-- VNG0069h one-of-top-five-correct: 0.4657302761897 CThresh: 2.819196 100 best_is: cluster19 VNG0069h cluster00 -> 1whtA0 7.4449098 250 / 64 conP: 0.092 CATH-ID: 3.40.50.1570 Serine carboxypeptidase ii complexed with l-benzylsuccinate VNG0069h cluster01 -> 1whtA0 6.7957192 250 / 64 conP: 0.077 CATH-ID: 3.40.50.1570 Serine carboxypeptidase ii complexed with l-benzylsuccinate VNG0069h cluster02 -> 1dpe03 7.3150415 219 / 64 conP: 0.120 CATH-ID: 3.10.105.10 Dipeptide-binding protein. Chain: null. Synonym: dipeptide permease VNG0069h cluster03 -> 1whtA0 7.2285129 250 / 64 conP: 0.087 CATH-ID: 3.40.50.1570 Serine carboxypeptidase ii complexed with l-benzylsuccinate VNG0069h cluster04 -> 1cy5A0 7.6808178 92 / 64 conP: 0.378 CATH-ID: 1.10.533.10 Apoptotic protease activating factor 1. Chain: a. Fragment: caspase re VNG0069h cluster19 -> 1ddf00 8.7432908 127 / 64 conP: 0.360 CATH-ID: 1.10.533.10 Fas. Chain: null. Engineered: yes --end-- VNG0070h one-of-top-five-correct: 0.272490384712707 CThresh: 6.926424 32 best_is: cluster19 VNG0070h cluster00 -> 1jud02 5.4642065 75 / 96 conP: 0.200 CATH-ID: 1.10.164.10 L-2-haloacid dehalogenase. Chain: null. Engineered: yes VNG0070h cluster01 -> 1aqt02 5.0778183 47 / 96 conP: 0.215 CATH-ID: 1.20.15.20 Atp synthase. Chain: null. Fragment: epsilon chain. Engineered: yes. M VNG0070h cluster02 -> 1c3uA3 5.6703756 82 / 96 conP: 0.201 CATH-ID: 1.10.164.30 Adenylosuccinate lyase. Chain: a, b. Engineered: yes VNG0070h cluster03 -> 1a1w00 6.5024456 83 / 96 conP: 0.241 CATH-ID: 1.10.533.10 Fadd protein. Chain: null. Fragment: death effector domain. Synonym: f VNG0070h cluster04 -> 1ljwA 4.7800706 141 / 96 conP: 0.112 NO-CATH VNG0070h cluster19 -> 1bhmA0 7.5648090 198 / 96 conP: 0.157 CATH-ID: 3.40.91.20 Endonuclease bamhi. Chain: a, b. Synonym: r. Bamhi. Engineered: yes. D --end-- VNG0075h one-of-top-five-correct: 0.279497354637708 CThresh: 5.060783 75 best_is: cluster04 VNG0075h cluster00 -> 1azwA0 4.7743555 313 / 73 conP: 0.022 CATH-ID: 3.40.50.950 Proline iminopeptidase. Chain: a, b. Engineered: yes VNG0075h cluster01 -> 1jncA 6.6389511 123 / 73 conP: 0.195 NO-CATH VNG0075h cluster02 -> 1a7602 5.7519580 60 / 73 conP: 0.256 CATH-ID: 1.10.150.20 Flap endonuclease-1 protein. Chain: null VNG0075h cluster03 -> 1gtxA1 5.5206645 167 / 73 conP: 0.103 CATH-ID: 3.30.70.160 4-aminobutyrate aminotransferase. Chain: a, b, c, d. Synonym: gaba-at. VNG0075h cluster04 -> 1jhgA0 7.3384403 101 / 73 conP: 0.268 CATH-ID: 1.10.1270.10 Trp operon repressor. Chain: a. Engineered: yes. Mutation: chain a, v5 --end-- VNG0076h one-of-top-five-correct: 0.162418135659437 CThresh: 3.025896 75 best_is: cluster19 VNG0076h cluster00 -> 1bxeA0 5.0616836 108 / 38 conP: 0.079 CATH-ID: 3.90.470.10 Ribosomal protein l22. Chain: a. Engineered: yes. Mutation: yes VNG0076h cluster01 -> 1gr7A 4.8089997 126 / 38 conP: 0.054 NO-CATH VNG0076h cluster02 -> 1bob03 5.3143675 54 / 38 conP: 0.199 CATH-ID: 1.10.900.10 Histone acetyltransferase. Chain: null. Synonym: hat1. Engineered: yes VNG0076h cluster03 -> 1schA2 3.7982641 135 / 38 conP: 0.035 CATH-ID: 1.10.420.10 Peanut peroxidase, major cationic isozyme. Chain: a, b. Synonym: pnp. VNG0076h cluster04 -> 1hcrA0 4.8089997 52 / 38 conP: 0.182 CATH-ID: 1.10.10.60 Hin recombinase (DNA-binding domain) complexed with DNA VNG0076h cluster19 -> 1a8vA1 5.3143675 49 / 38 conP: 0.214 CATH-ID: 1.10.720.10 Transcription termination factor rho. Chain: a, b. Fragment: RNA-bindi --end-- VNG0079h one-of-top-five-correct: 0.182061614382253 CThresh: 6.990823 67 best_is: cluster05 VNG0079h cluster00 -> 1pot01 5.9188440 166 / 70 conP: 0.072 CATH-ID: 3.40.190.10 Spermidine/putrescine-binding protein. Chain: null. Synonym: potd. Oth VNG0079h cluster01 -> 1ysc01 5.2869505 349 / 70 conP: 0.010 CATH-ID: 3.40.50.950 Serine carboxypeptidase (cpy, cpd-y, or proteinasE C) VNG0079h cluster02 -> 1ytbA2 4.4444258 86 / 70 conP: 0.101 CATH-ID: 3.30.310.10 Tata-box binding protein (ytbp) complexed with DNA containing tata-box VNG0079h cluster03 -> 1br6A1 5.0763193 179 / 70 conP: 0.051 CATH-ID: 3.40.420.10 Ricin. Chain: a. Synonym: rta. Engineered: yes VNG0079h cluster04 -> 1i4nA 5.7082128 251 / 70 conP: 0.030 NO-CATH VNG0079h cluster05 -> 1k3fA 6.7613687 253 / 70 conP: 0.040 NO-CATH --end-- VNG00810 one-of-top-five-correct: 0.30826724292399 CThresh: 5.107498 75 best_is: cluster19 VNG00810 cluster00 -> 1dioB0 5.7319448 179 / 82 conP: 0.122 CATH-ID: 3.40.990.10 Diol dehydratase. Chain: a, l. Engineered: yes. Diol dehydratase. Chai VNG00810 cluster01 -> 1qdlB0 5.9327293 195 / 82 conP: 0.114 CATH-ID: 3.40.50.880 Anthranilate synthase (trpe-subunit). Chain: a. Fragment: aminodeoxyis VNG00810 cluster02 -> 1ithA0 6.4428972 141 / 82 conP: 0.191 CATH-ID: 1.10.490.10 Hemoglobin (cyanomet) VNG00810 cluster03 -> 1dlxA0 7.0401231 120 / 82 conP: 0.251 CATH-ID: 3.30.920.10 Frataxin. Chain: a. Fragment: c-terminal domain (91-130). Engineered: VNG00810 cluster04 -> 1pkyA1 5.7319448 128 / 82 conP: 0.177 CATH-ID: 3.40.50.50 Pyruvate kinase. Chain: a, b, c, d. Other_details: t state VNG00810 cluster19 -> 1d1dA1 7.5344570 140 / 82 conP: 0.245 CATH-ID: 1.10.375.10 Capsid protein. Chain: a. Engineered: yes. Mutation: yes --end-- VNG00851 one-of-top-five-correct: 0.245165538781962 CThresh: 7.993176 25 best_is: cluster03 VNG00851 cluster00 -> 1c0iA 6.2846672 363 / 117 conP: 0.053 NO-CATH VNG00851 cluster01 -> 1cf7B0 4.9288066 82 / 117 conP: 0.170 CATH-ID: 1.10.10.10 Transcription factor e2f-4. Chain: a. Fragment: DNA-binding domain. En VNG00851 cluster02 -> 1bmtA2 6.2236283 158 / 117 conP: 0.159 CATH-ID: 3.40.50.280 Methionine synthase (b12-binding domains) VNG00851 cluster03 -> 1l6wA 7.1801992 220 / 117 conP: 0.147 NO-CATH VNG00851 cluster04 -> 1skf00 5.0856618 262 / 117 conP: 0.068 CATH-ID: 3.40.710.10 D-alanyl-d-alanine transpeptidase. Chain: null. Ec: 3.4.16.4 --end-- VNG01062 one-of-top-five-correct: 0.414997653242312 CThresh: 4.817350 75 best_is: cluster18 VNG01062 cluster00 -> 1avpA0 6.8245863 204 / 86 conP: 0.154 CATH-ID: 3.40.395.10 Adenoviral proteinase. Chain: a. Fragment: main. Synonym: avp. Enginee VNG01062 cluster01 -> 1bh9A0 5.8969285 45 / 86 conP: 0.338 CATH-ID: 1.10.20.10 Tafii18. Chain: a. Fragment: residues 31 - 75. Synonym: transcription VNG01062 cluster02 -> 1qaxA2 6.4466854 260 / 86 conP: 0.094 CATH-ID: 3.90.770.10 3-hydroxy-3-methylglutaryl-coenzyme a reductase. Chain: a, b. Engineer VNG01062 cluster03 -> 1b65A 7.2073430 363 / 86 conP: 0.053 NO-CATH VNG01062 cluster04 -> 1cf7B0 7.6267428 82 / 86 conP: 0.383 CATH-ID: 1.10.10.10 Transcription factor e2f-4. Chain: a. Fragment: DNA-binding domain. En VNG01062 cluster18 -> 1mba00 8.5844543 146 / 86 conP: 0.327 CATH-ID: 1.10.490.10 Myoglobin (met) ( p H 7.0) --end-- VNG01130 one-of-top-five-correct: 0.217636000776331 CThresh: 6.994665 40 best_is: cluster01 VNG01130 cluster00 -> 1tsrA0 5.8767511 196 / 98 conP: 0.107 CATH-ID: 2.60.40.720 P53 tumor suppressor. Chain: a, b, c. Engineered: yes. DNA. Chain: e, VNG01130 cluster01 -> 1csn01 6.7358675 82 / 98 conP: 0.257 CATH-ID: 3.30.200.20 Casein kinase-1. Heterogen: mg-atp VNG01130 cluster02 -> 191400 4.9257852 171 / 98 conP: 0.098 CATH-ID: 3.30.720.10 Signal recognition particle 9/14 fusion protein. Chain: null. Fragment VNG01130 cluster03 -> 1mpyA2 5.2385462 158 / 98 conP: 0.115 CATH-ID: 3.10.180.10 Catechol 2,3-dioxygenase. Chain: a, b, c, d. Synonym: metapyrocatechas VNG01130 cluster04 -> 1cojA0 6.3715959 211 / 98 conP: 0.110 CATH-ID: 3.90.149.10 Superoxide dismutase. Chain: a. Engineered: yes. Biological_unit: homo --end-- VNG01131 one-of-top-five-correct: 0.445847207906368 CThresh: 4.929050 75 best_is: cluster15 VNG01131 cluster00 -> 1enh00 7.7330147 54 / 113 conP: 0.512 CATH-ID: 1.10.10.60 Engrailed homeodomain VNG01131 cluster01 -> 1bw6A0 7.6230167 56 / 113 conP: 0.501 CATH-ID: 1.10.10.60 Centromere protein b. Chain: a. Fragment: DNA-binding domain. Engineer VNG01131 cluster02 -> 1ba500 7.5609937 53 / 113 conP: 0.501 CATH-ID: 1.10.10.60 Htrf1. Chain: null. Fragment: DNA-binding domain. Synonym: telomeric r VNG01131 cluster03 -> 1mbe00 7.2265949 52 / 113 conP: 0.478 CATH-ID: 1.10.10.60 Myb proto-oncogene protein. Domain: DNA-binding domain repeat 1. Other VNG01131 cluster04 -> 1bw6A0 6.2715493 56 / 113 conP: 0.404 CATH-ID: 1.10.10.60 Centromere protein b. Chain: a. Fragment: DNA-binding domain. Engineer VNG01131 cluster15 -> 1colA0 8.3649118 197 / 113 conP: 0.341 CATH-ID: 1.10.490.30 Colicin A (c-terminal domain) (pore-forming domain) --end-- VNG0117h one-of-top-five-correct: 0.336489142501321 CThresh: 6.279420 75 best_is: cluster12 VNG0117h cluster00 -> 1fruA1 5.8970753 177 / 90 conP: 0.121 CATH-ID: 3.30.500.10 Fc (igg) receptor (neonatal) (orthorhombic crystal form) (fcrn) (extra VNG0117h cluster01 -> 1faeA1 4.5307615 425 / 90 conP: 0.013 CATH-ID: 1.50.10.10 Endo-1,4-beta-glucanase f. Chain: a. Fragment: catalytic module. Synon VNG0117h cluster02 -> 1bncA3 4.5490952 60 / 90 conP: 0.188 CATH-ID: 2.30.35.30 Biotin carboxylase. Chain: a, b. Ec: 6.3.4.14 VNG0117h cluster03 -> 1bx2B 6.2616333 191 / 90 conP: 0.120 NO-CATH VNG0117h cluster04 -> 1hw5A2 6.0813734 68 / 90 conP: 0.252 CATH-ID: 1.10.10.10 Catabolite gene activator. Chain: a, b. Synonym: camp receptor protein VNG0117h cluster12 -> 1znbA0 8.2376115 228 / 90 conP: 0.153 CATH-ID: 3.60.15.10 Metallo-beta-lactamase. Chain: a, b. Synonym: class b beta-lactamase. --end-- VNG0118h one-of-top-five-correct: 0.240578302024826 CThresh: 8.302255 25 best_is: cluster17 VNG0118h cluster00 -> 1bha00 5.8109547 67 / 126 conP: 0.228 CATH-ID: 1.20.15.140 Bacteriorhodopsin (proteolytic fragment 1 - 71, solubilized in sds mic VNG0118h cluster01 -> 1kj3I 5.0653743 278 / 126 conP: 0.069 NO-CATH VNG0118h cluster02 -> 5tmpA0 4.5695740 210 / 126 conP: 0.085 CATH-ID: 3.40.50.300 Thymidylate kinase. Chain: a. Engineered: yes VNG0118h cluster03 -> 1mnmA 4.9718840 85 / 126 conP: 0.173 NO-CATH VNG0118h cluster04 -> 1am9A0 4.5422160 80 / 126 conP: 0.160 CATH-ID: 4.10.280.10 Sterol regulatory element binding protein 1a. Chain: a, b, c, d. Fragm VNG0118h cluster17 -> 1tfe01 7.0471428 97 / 126 conP: 0.263 CATH-ID: 3.30.479.20 Elongation factor ts. Chain: null. Fragment: ef-ts dimerization domain --end-- VNG0119h one-of-top-five-correct: 0.312050898224738 CThresh: 3.246695 75 best_is: cluster12 VNG0119h cluster00 -> 1bi2B1 6.5183565 73 / 51 conP: 0.266 CATH-ID: 1.10.10.10 Diphtheria toxin repressor. Chain: a, b. Synonym: dtxr. Engineered: ye VNG0119h cluster01 -> 2a3dA0 7.4448570 73 / 51 conP: 0.322 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes VNG0119h cluster02 -> 2bct00 6.9816067 502 / 51 conP: 0.001 CATH-ID: 1.25.30.10 Beta-catenin. Chain: null. Fragment: armadillo repeat region. Engineer VNG0119h cluster03 -> 1fts01 5.3602307 84 / 51 conP: 0.183 CATH-ID: 1.20.120.140 Ftsy. Chain: null. Fragment: ng-domain residues 197 - 497. Engineered: VNG0119h cluster04 -> 1fohA1 6.7499816 253 / 51 conP: 0.032 CATH-ID: 3.50.50.60 Phenol hydroxylase. Chain: a, b, c, d. Engineered: yes. Biological_uni VNG0119h cluster12 -> 1bqg01 7.4448570 138 / 51 conP: 0.163 CATH-ID: 3.30.390.10 D-glucarate dehydratase. Chain: null. Engineered: yes. Biological_unit --end-- VNG0120h one-of-top-five-correct: 0.171807127282778 CThresh: 3.559357 75 best_is: cluster19 VNG0120h cluster00 -> 1hx0A 4.9487457 495 / 40 conP: 0.000 NO-CATH VNG0120h cluster01 -> 1wjbA0 4.6068526 55 / 40 conP: 0.158 CATH-ID: 1.10.10.200 HIV-1 integrase. Chain: a, b VNG0120h cluster02 -> 1qlmA1 4.7786218 118 / 40 conP: 0.062 CATH-ID: 3.10.340.11 Methenyltetrahydromethanopterin cyclohydrolase. Chain: a. Engineered: VNG0120h cluster03 -> 2ifeA0 3.9531217 91 / 40 conP: 0.077 CATH-ID: 3.30.110.10 Translation initiation factor if3. Chain: a. Fragment: ribosome-bindin VNG0120h cluster04 -> 2ifeA0 5.4465578 91 / 40 conP: 0.113 CATH-ID: 3.30.110.10 Translation initiation factor if3. Chain: a. Fragment: ribosome-bindin VNG0120h cluster19 -> 1b7yB1 5.6954638 70 / 40 conP: 0.165 CATH-ID: 3.30.56.10 Phenylalanyl-tRNA synthetase. Chain: a. Synonym: phers. Phenylalanyl-t --end-- VNG0125h one-of-top-five-correct: 0.258285437285577 CThresh: 8.383727 25 best_is: cluster00 VNG0125h cluster00 -> 1eo0A0 7.3203282 77 / 127 conP: 0.300 CATH-ID: 1.20.930.10 Transcription elongation factor s-ii. Chain: a. Fragment: domain i. En VNG0125h cluster01 -> 1chkA1 6.6258639 143 / 127 conP: 0.196 CATH-ID: 1.20.141.10 Chitosanase. Chain: a, b. Synonym: endochitosanase. Engineered: yes VNG0125h cluster02 -> 1rpa00 6.1331553 342 / 127 conP: 0.066 CATH-ID: 3.40.50.1240 Prostatic acid phosphatase complexed with tartaric acid VNG0125h cluster03 -> 1itf00 6.4845750 165 / 127 conP: 0.172 CATH-ID: 1.20.120.210 Interferon alpha-2a. Chain: null. Engineered: yes. Biological_unit: mo VNG0125h cluster04 -> 1iku01 5.9815145 94 / 127 conP: 0.210 CATH-ID: 1.10.238.10 Recoverin. Chain: null. Engineered: yes --end-- VNG0127c one-of-top-five-correct: 0.362096270108151 CThresh: 6.117272 75 best_is: cluster18 VNG0127c cluster00 -> 1ospO3 5.1383540 102 / 108 conP: 0.209 CATH-ID: 3.66.10.1 Fab 184.1. Chain: l, h. Outer surface protein a. Chain: o. Synonym: os VNG0127c cluster01 -> 2hhmA1 7.2993904 142 / 108 conP: 0.275 CATH-ID: 3.30.540.10 Human inositol monophosphatase dimer complex with gadolinium and sulfa VNG0127c cluster02 -> 1cb8A2 5.2683639 246 / 108 conP: 0.097 CATH-ID: 2.70.98.20 Chondroitinase ac. Chain: a. Ec: 4.2.2.5 VNG0127c cluster03 -> 1rypB0 5.6376414 250 / 108 conP: 0.105 CATH-ID: 3.60.20.10 20s proteasome. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, VNG0127c cluster04 -> 1nscA0 6.1915577 390 / 108 conP: 0.052 CATH-ID: 2.120.10.10 Neuraminidase (sialidase) complex with n-acetyl neuraminic acid (siali VNG0127c cluster18 -> 1ei5A1 8.0627374 321 / 108 conP: 0.129 CATH-ID: 3.40.710.10 D-aminopeptidase. Chain: a. Synonym: dap. Engineered: yes --end-- VNG01290 one-of-top-five-correct: 0.435776909337888 CThresh: 2.929464 100 best_is: cluster19 VNG01290 cluster00 -> 1a2vA1 8.3540866 100 / 59 conP: 0.368 CATH-ID: 3.10.30.70 Methylamine oxidase. Chain: a, b, c, d, e, f. Engineered: yes. Biologi VNG01290 cluster01 -> 1ofgA2 7.6888363 190 / 59 conP: 0.142 CATH-ID: 3.30.360.10 Glucose-fructose oxidoreductase. Chain: a, b, c, d, e, f. Ec: 1.1.99.2 VNG01290 cluster02 -> 1sesA2 6.5800857 318 / 59 conP: 0.026 CATH-ID: 3.40.690.10 Seryl-tRNA synthetase (serine-tRNA ligase) complexed with seryl-hydrox VNG01290 cluster03 -> 1g5hA 7.9105864 399 / 59 conP: 0.015 NO-CATH VNG01290 cluster04 -> 2polA3 7.9105864 119 / 59 conP: 0.290 CATH-ID: 3.10.150.10 Pol iii (beta subunit) VNG01290 cluster19 -> 1hw7A 8.5758367 229 / 59 conP: 0.118 NO-CATH --end-- VNG0130h one-of-top-five-correct: 0.414694007473019 CThresh: 3.939214 75 best_is: cluster04 VNG0130h cluster00 -> 1rypH0 7.5443605 205 / 59 conP: 0.095 CATH-ID: 3.60.20.10 20s proteasome. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, VNG0130h cluster01 -> 1drgA 7.6888363 313 / 59 conP: 0.030 NO-CATH VNG0130h cluster02 -> 1bia02 6.8018358 181 / 59 conP: 0.102 CATH-ID: 3.30.930.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG0130h cluster03 -> 1jf7A 7.8940737 281 / 59 conP: 0.045 NO-CATH VNG0130h cluster04 -> 1guxB0 8.7975869 141 / 59 conP: 0.244 CATH-ID: 1.10.472.10 Retinoblastoma protein. Chain: a, b. Fragment: pocket domain. Engineer --end-- VNG01330 one-of-top-five-correct: 0.184769866725921 CThresh: 6.998703 70 best_is: cluster14 VNG01330 cluster00 -> 2lbp02 4.8977625 145 / 88 conP: 0.097 CATH-ID: 3.40.50.3600 Leucine-binding protein ( LBP ) VNG01330 cluster01 -> 1mdl01 4.5078260 126 / 88 conP: 0.101 CATH-ID: 3.30.390.10 Mandelate racemase. Chain: null. Engineered: yes. Mutation: k166r VNG01330 cluster02 -> 1ebfA2 5.1941520 175 / 88 conP: 0.085 CATH-ID: 3.90.750.10 Homoserine dehydrogenase. Chain: a, b. Engineered: yes VNG01330 cluster03 -> 1iarB2 5.1680373 92 / 88 conP: 0.151 CATH-ID: 2.60.40.30 Interleukin-4. Chain: a. Engineered: yes. Interleukin-4 receptor alpha VNG01330 cluster04 -> 1eif02 4.7697299 60 / 88 conP: 0.170 CATH-ID: 2.40.50.130 Eukaryotic translation initiation factor 5a. Chain: null. Engineered: VNG01330 cluster14 -> 1f94A0 6.4045771 63 / 88 conP: 0.242 CATH-ID: 2.10.60.10 Bucandin. Chain: a --end-- VNG01332 one-of-top-five-correct: 0.321692528731781 CThresh: 4.988890 75 best_is: cluster17 VNG01332 cluster00 -> 1e2tA2 6.8797522 115 / 75 conP: 0.230 CATH-ID: 2.40.128.40 N-hydroxyarylamine o-acetyltransferase. Chain: a, b, c, d, e, f, g, h. VNG01332 cluster01 -> 1acf00 6.7789856 125 / 75 conP: 0.209 CATH-ID: 3.30.450.30 Profilin i VNG01332 cluster02 -> 1hn2A 5.5412725 159 / 75 conP: 0.118 NO-CATH VNG01332 cluster03 -> 1oacA1 6.8134434 80 / 75 conP: 0.288 CATH-ID: 3.30.457.10 Copper amine oxidase. Chain: a, b. Ec: 1.4.3.6 VNG01332 cluster04 -> 1k82A 5.9538435 260 / 75 conP: 0.056 NO-CATH VNG01332 cluster17 -> 1acf00 7.8104132 125 / 75 conP: 0.262 CATH-ID: 3.30.450.30 Profilin i --end-- VNG01340 one-of-top-five-correct: 0.430513741385386 CThresh: 4.499180 75 best_is: cluster16 VNG01340 cluster00 -> 1wer02 5.1592367 148 / 74 conP: 0.127 CATH-ID: 1.10.494.10 P120gap. Chain: null. Fragment: catalytic domain, residues 714 - 1047. VNG01340 cluster01 -> 1wer02 7.0233586 148 / 74 conP: 0.199 CATH-ID: 1.10.494.10 P120gap. Chain: null. Fragment: catalytic domain, residues 714 - 1047. VNG01340 cluster02 -> 1ash00 6.4019846 147 / 74 conP: 0.173 CATH-ID: 1.10.490.10 Hemoglobin (domain one) VNG01340 cluster03 -> 1bu2A2 6.6048498 102 / 74 conP: 0.254 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG01340 cluster04 -> 1eo0A0 6.4019846 77 / 74 conP: 0.289 CATH-ID: 1.20.930.10 Transcription elongation factor s-ii. Chain: a. Fragment: domain i. En VNG01340 cluster16 -> 1b3uA0 8.8874806 588 / 74 conP: 0.007 CATH-ID: 1.25.30.30 Protein phosphatase pp2a. Chain: a, b. Fragment: 65 kd regulatory subu --end-- VNG01370 one-of-top-five-correct: 0.387693781374101 CThresh: 6.848445 75 best_is: cluster14 VNG01370 cluster00 -> 1otgA0 8.1234905 125 / 111 conP: 0.323 CATH-ID: 3.30.457.20 5-carboxymethyl-2-hydroxymuconate isomerase. Chain: a, b, c. Engineere VNG01370 cluster01 -> 1tkiA1 7.1716524 84 / 111 conP: 0.319 CATH-ID: 3.30.200.20 Titin. Chain: a, b. Fragment: kinase. Engineered: yes VNG01370 cluster02 -> 2fbjH2 7.2700956 73 / 111 conP: 0.341 CATH-ID: 2.60.40.10 Ig A fab fragment (j539) (galactan-binding) VNG01370 cluster03 -> 1hka00 8.6037797 158 / 111 conP: 0.308 CATH-ID: 3.30.70.560 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase. Chain: null. Syno VNG01370 cluster04 -> 1hka00 7.0363064 158 / 111 conP: 0.220 CATH-ID: 3.30.70.560 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase. Chain: null. Syno VNG01370 cluster14 -> 1otgA0 8.6251283 125 / 111 conP: 0.355 CATH-ID: 3.30.457.20 5-carboxymethyl-2-hydroxymuconate isomerase. Chain: a, b, c. Engineere --end-- VNG0138h one-of-top-five-correct: 0.555131446175725 CThresh: 2.443989 100 best_is: cluster09 VNG0138h cluster00 -> 1vin02 6.1529411 113 / 82 conP: 0.334 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O VNG0138h cluster01 -> 1ctf00 6.3056058 68 / 82 conP: 0.435 CATH-ID: 3.30.70.70 L7(slash) L12 50 s ribosomal protein (c-terminal domain) VNG0138h cluster02 -> 1serA1 5.9021462 53 / 82 conP: 0.438 CATH-ID: 1.20.15.10 Seryl-tRNA synthetase complexed with tRNA-ser 2 (gga anticodon) VNG0138h cluster03 -> 1pbwA0 6.3342984 184 / 82 conP: 0.224 CATH-ID: 1.10.555.10 Phosphatidylinositol 3-kinase. Chain: a, b. Fragment: p85 alpha subuni VNG0138h cluster04 -> 1vhh00 6.3342984 157 / 82 conP: 0.267 CATH-ID: 3.30.70.540 Sonic hedgehog. Chain: null. Domain: amino-terminal domain (residues 3 VNG0138h cluster09 -> 1elrA0 9.1452821 128 / 82 conP: 0.511 CATH-ID: 1.25.40.10 Tpr2a-domain of hop. Chain: a. Fragment: middle domain. Engineered: ye --end-- VNG0140h one-of-top-five-correct: 0.282169854614346 CThresh: 5.835924 75 best_is: cluster14 VNG0140h cluster00 -> 1ejkA0 5.0237741 81 / 69 conP: 0.151 CATH-ID: 3.30.910.10 Dini protein. Chain: a. Engineered: yes VNG0140h cluster01 -> 4crxA2 4.8972666 111 / 69 conP: 0.112 CATH-ID: 1.10.150.130 Cre recombinase. Chain: a, b. Engineered: yes. Mutation: r173k. Biolog VNG0140h cluster02 -> 1af701 5.1230855 80 / 69 conP: 0.156 CATH-ID: 1.10.155.10 Chemotaxis receptor methyltransferase cher. Chain: null. Engineered: y VNG0140h cluster03 -> 2eiaA1 5.0125883 132 / 69 conP: 0.096 CATH-ID: 1.10.375.10 Eiav capsid protein p26. Chain: a, b. Engineered: yes VNG0140h cluster04 -> 1uxy03 5.3203619 150 / 69 conP: 0.088 CATH-ID: 3.30.465.10 Uridine diphospho-n-acetylenolpyruvylglucosamine reductase. Chain: nul VNG0140h cluster14 -> 1aorA2 7.8172812 186 / 69 conP: 0.121 CATH-ID: 1.10.569.10 Aldehyde ferredoxin oxidoreductase protein complexed with molybdopteri --end-- VNG0141h one-of-top-five-correct: 0.327785631865569 CThresh: 5.486765 75 best_is: cluster06 VNG0141h cluster00 -> 1mdl01 6.3998700 126 / 87 conP: 0.211 CATH-ID: 3.30.390.10 Mandelate racemase. Chain: null. Engineered: yes. Mutation: k166r VNG0141h cluster01 -> 1bix00 7.3628783 275 / 87 conP: 0.096 CATH-ID: 3.60.10.10 Ap endonuclease 1. Chain: null. Engineered: yes. Biological_unit: mono VNG0141h cluster02 -> 1ps1A0 6.5740413 304 / 87 conP: 0.063 CATH-ID: 1.10.615.10 Pentalenene synthase. Chain: a, b. Engineered: yes. Biological_unit: m VNG0141h cluster03 -> 1dkxA2 7.3651143 80 / 87 conP: 0.338 CATH-ID: 1.20.120.110 Substrate binding domain of dnak. Chain: a. Biological_unit: dimer. Su VNG0141h cluster04 -> 1jf7A 7.7581601 281 / 87 conP: 0.102 NO-CATH VNG0141h cluster06 -> 1cjl00.man 7.8390286 215 / 87 conP: 0.165 NO-CATH --end-- VNG0142c one-of-top-five-correct: 0.511557215140206 CThresh: 6.024544 75 best_is: cluster18 VNG0142c cluster00 -> 1enh00 6.5955648 54 / 133 conP: 0.415 CATH-ID: 1.10.10.60 Engrailed homeodomain VNG0142c cluster01 -> 1mbe00 7.2265949 52 / 133 conP: 0.463 CATH-ID: 1.10.10.60 Myb proto-oncogene protein. Domain: DNA-binding domain repeat 1. Other VNG0142c cluster02 -> 1sfe02 7.4672969 84 / 133 conP: 0.438 CATH-ID: 1.10.10.10 Ada o6-methylguanine-DNA methyltransferase. Chain: null. Fragment: c-t VNG0142c cluster03 -> 1idy00 6.6747465 54 / 133 conP: 0.421 CATH-ID: 1.10.10.60 MousE C-myb DNA-binding domain repeat 3. Chain: null. Engineered: yes. VNG0142c cluster04 -> 1ku3A 6.8818112 61 / 133 conP: 0.426 NO-CATH VNG0142c cluster18 -> 1bby00 9.1282202 69 / 133 conP: 0.577 CATH-ID: 1.10.10.10 Rap30. Chain: null. Fragment: DNA-binding domain. Synonym: transcripti --end-- VNG0143h one-of-top-five-correct: 0.158699751989252 CThresh: 9.983826 25 best_is: cluster16 VNG0143h cluster00 -> 1be3H0 3.9142920 64 / 136 conP: 0.116 CATH-ID: 1.10.287.20 Cytochrome bc1 complex. Chain: a, b, c, d, e, f, g, h, i, j, k. Synony VNG0143h cluster01 -> 1aj8A2 5.4036472 98 / 136 conP: 0.144 CATH-ID: 1.10.230.10 Citrate synthase. Chain: a, b. Engineered: yes. Biological_unit: dimer VNG0143h cluster02 -> 1xsm00 4.6959257 288 / 136 conP: 0.049 CATH-ID: 1.10.620.20 Ribonucleotide reductase r2. Chain: null. Synonym: r2. Engineered: yes VNG0143h cluster03 -> 1cjcA1 3.4821004 214 / 136 conP: 0.051 CATH-ID: 3.40.50.1140 Adrenodoxin reductase. Chain: a. Synonym: adr, nadph: adrenodoxin oxid VNG0143h cluster04 -> 1yub02 3.3652394 80 / 136 conP: 0.093 CATH-ID: 1.10.221.10 Rrna methyltransferase. Chain: null. Synonym: ermam. Engineered: yes. VNG0143h cluster16 -> 1pmt02 6.1628340 107 / 136 conP: 0.167 CATH-ID: 1.20.1050.10 Glutathione transferase. Chain: null. Synonym: pmgst, gst b1-1. Engine --end-- VNG0146h one-of-top-five-correct: 0.255364473832887 CThresh: 5.514391 75 best_is: cluster07 VNG0146h cluster00 -> 1httA2 5.0691876 98 / 77 conP: 0.160 CATH-ID: 3.40.50.800 Histidyl-tRNA synthetase. Chain: a, b, c, d. Synonym: histidine-tRNA l VNG0146h cluster01 -> 1dn1A3 6.0924333 120 / 77 conP: 0.174 CATH-ID: 1.25.40.60 Syntaxin binding protein 1. Chain: a. Synonym: nsec1. Engineered: yes. VNG0146h cluster02 -> 1ev7A 5.4784859 295 / 77 conP: 0.035 NO-CATH VNG0146h cluster03 -> 1a0p01 6.3031313 91 / 77 conP: 0.225 CATH-ID: 1.10.150.130 Site-specific recombinase xerd. Chain: null. Engineered: yes VNG0146h cluster04 -> 1jkrC 5.2123082 46 / 77 conP: 0.242 NO-CATH VNG0146h cluster07 -> 1fqvB0 7.1156790 137 / 77 conP: 0.195 CATH-ID: 3.30.710.10 Skp2. Chain: a, c, e, g, i, k, m, o. Fragment: 101-436. Synonym: cycli --end-- VNG01470 one-of-top-five-correct: 0.418076681657561 CThresh: 1.541688 100 best_is: cluster13 VNG01470 cluster00 -> 1jjuA 6.6736612 489 / 57 conP: 0.004 NO-CATH VNG01470 cluster01 -> 1hz6A0 6.4496071 67 / 57 conP: 0.395 CATH-ID: 3.10.20.210 Protein l. Chain: a, b, c. Fragment: b1 domain. Synonym: ig kappa ligh VNG01470 cluster02 -> 1elkA0 7.1217693 153 / 57 conP: 0.216 CATH-ID: 1.25.40.90 Target of myb1. Chain: a, b. Fragment: vhs domain. Engineered: yes. Mu VNG01470 cluster03 -> 1ihgA 7.3458234 364 / 57 conP: 0.022 NO-CATH VNG01470 cluster04 -> 1jjuA 5.6511388 489 / 57 conP: 0.003 NO-CATH VNG01470 cluster13 -> 1qjtA0 7.7939316 99 / 57 conP: 0.393 CATH-ID: 1.10.238.10 Epidermal growth factor receptor substrate substrate 15, eps15. Chain: --end-- VNG01471 one-of-top-five-correct: 0.655929539806206 CThresh: 5.646842 75 best_is: cluster12 VNG01471 cluster00 -> 1bob02 6.8299319 124 / 96 conP: 0.257 CATH-ID: 3.40.630.30 Histone acetyltransferase. Chain: null. Synonym: hat1. Engineered: yes VNG01471 cluster01 -> 1qsmB0 7.4951745 149 / 96 conP: 0.259 CATH-ID: 3.40.630.30 Hpa2 histone acetyltransferase. Chain: a, b, c, d. Engineered: yes VNG01471 cluster02 -> 1gytC 7.6669607 503 / 96 conP: 0.027 NO-CATH VNG01471 cluster03 -> 1u2fA0 5.7698338 90 / 96 conP: 0.246 CATH-ID: 3.30.70.330 Splicing factor u2af 65 kd subunit. Chain: a. Fragment: first RNA-bind VNG01471 cluster04 -> 1bhmA0 6.9125229 198 / 96 conP: 0.171 CATH-ID: 3.40.91.20 Endonuclease bamhi. Chain: a, b. Synonym: r. Bamhi. Engineered: yes. D VNG01471 cluster12 -> 1ej4A0 11.439150 179 / 96 conP: 0.467 CATH-ID: 3.30.760.10 Eukaryotic initiation factor 4e. Chain: a. Fragment: residues 28-217. --end-- VNG0148h one-of-top-five-correct: 0.166254817038702 CThresh: 1.413834 100 best_is: cluster09 VNG0148h cluster00 -> 1a5t02 4.4692423 40 / 35 conP: 0.250 CATH-ID: 1.10.8.10 Delta prime. Chain: null. Synonym: holb. Engineered: yes. Biological_u VNG0148h cluster01 -> 1floA2 4.7280758 264 / 35 conP: 0.004 CATH-ID: 1.10.443.10 Flp recombinase. Chain: a, b, c, d. Fragment: flp. Synonym: site-speci VNG0148h cluster02 -> 1aipC3 4.7280758 53 / 35 conP: 0.217 CATH-ID: 1.10.8.30 Elongation factor tu. Chain: a, b, e, f. Synonym: ef-tu. Engineered: y VNG0148h cluster03 -> 1gln04 4.7280758 48 / 35 conP: 0.235 CATH-ID: 1.10.8.70 Glutamyl-tRNA synthetase. Chain: null VNG0148h cluster04 -> 1bpb01 4.4692423 58 / 35 conP: 0.189 CATH-ID: 1.10.150.20 DNA polymerase beta (beta polymerase) (apo, 31kd domain) VNG0148h cluster09 -> 1ab401 4.7280758 271 / 35 conP: 0.004 CATH-ID: 3.90.199.10 Gyrase a. Chain: null. Fragment: 59kda fragment. Engineered: yes. Biol --end-- VNG01491 one-of-top-five-correct: 0.435213531077422 CThresh: 4.603566 75 best_is: cluster09 VNG01491 cluster00 -> 1tib00 8.4464180 269 / 70 conP: 0.089 CATH-ID: 3.40.50.950 Lipase (triacylglycerol acylhydrolase) VNG01491 cluster01 -> 1knyA2 6.7613687 128 / 70 conP: 0.198 CATH-ID: 1.20.30.20 Kanamycin nucleotidyltransferase. Chain: a, b. Synonym: kntase. Engine VNG01491 cluster02 -> 1qtwA0 6.1294751 285 / 70 conP: 0.041 CATH-ID: 3.20.20.150 Endonuclease iv. Chain: a. Engineered: yes VNG01491 cluster03 -> 1a6f00 7.5702812 113 / 70 conP: 0.266 CATH-ID: 3.30.230.10 Ribonuclease p protein. Chain: null. Synonym: rnase p protein. Enginee VNG01491 cluster04 -> 3pvaA0 7.1826310 334 / 70 conP: 0.034 CATH-ID: 3.60.60.10 Penicillin v acylase. Chain: a, b, c, d, e, f, g, h. Synonym: penicill VNG01491 cluster09 -> 1scuA2 9.0783115 166 / 70 conP: 0.248 CATH-ID: 3.40.50.261 Succinyl-coa synthetase (succinate-coa ligase) (adp-forming) --end-- VNG01493 one-of-top-five-correct: 0.265782455554996 CThresh: 4.026587 75 best_is: cluster05 VNG01493 cluster00 -> 1amx00 5.4316340 150 / 60 conP: 0.101 CATH-ID: 2.60.40.740 Collagen adhesin. Chain: null. Fragment: cbd (151 - 318). Synonym: cbd VNG01493 cluster01 -> 3vub00 5.9702728 101 / 60 conP: 0.188 CATH-ID: 2.30.30.150 Ccdb. Chain: null. Engineered: yes. Biological_unit: dimer VNG01493 cluster02 -> 1btn00 5.4316340 106 / 60 conP: 0.158 CATH-ID: 2.30.29.30 Beta-spectrin. Chain: null. Fragment: ph domain, residues 2199 - 2304. VNG01493 cluster03 -> 1cg2A1 6.0935382 279 / 60 conP: 0.029 CATH-ID: 3.40.630.10 Carboxypeptidase g2. Chain: a, b, c, d. Engineered: yes. Biological_un VNG01493 cluster04 -> 1bebA0 4.5490952 156 / 60 conP: 0.075 CATH-ID: 2.40.128.20 Beta-lactoglobulin. Chain: a, b. Biological_unit: predominantly dimeri VNG01493 cluster05 -> 1gsh02 6.9760770 105 / 60 conP: 0.228 CATH-ID: 3.30.470.20 Glutathione biosynthetic ligase. Chain: null. Synonym: glutathione syn --end-- VNG0151c one-of-top-five-correct: 0.421537922064581 CThresh: 6.605114 75 best_is: cluster07 VNG0151c cluster00 -> 1ospO2 6.2356770 76 / 92 conP: 0.240 CATH-ID: 2.20.50.10 Fab 184.1. Chain: l, h. Outer surface protein a. Chain: o. Synonym: os VNG0151c cluster01 -> 1bec01 7.2266912 112 / 92 conP: 0.243 CATH-ID: 2.60.40.10 14.3.D t cell antigen receptor. Chain: null. Domain: extracellular por VNG0151c cluster02 -> 1jfqH 7.1994270 220 / 92 conP: 0.123 NO-CATH VNG0151c cluster03 -> 1fus00 6.4238782 106 / 92 conP: 0.210 CATH-ID: 3.10.30.50 Ribonuclease f1 VNG0151c cluster04 -> 1ew4A0 7.5872015 106 / 92 conP: 0.271 CATH-ID: 3.30.920.10 Cyay protein. Chain: a. Engineered: yes VNG0151c cluster07 -> 1fil00 9.3321865 139 / 92 conP: 0.324 CATH-ID: 3.30.450.30 Profilin. Chain: null. Engineered: yes. Other_details: crystallized fr --end-- VNG01560 one-of-top-five-correct: 0.307367291162035 CThresh: 6.486662 75 best_is: cluster04 VNG01560 cluster00 -> 1ars02 5.3639700 271 / 88 conP: 0.048 CATH-ID: 3.40.640.10 Aspartate aminotransferase complexed with pyridoxal-5'-phosphate VNG01560 cluster01 -> 1gym00 6.7583493 296 / 88 conP: 0.059 CATH-ID: 3.20.20.190 Phosphatidylinositol-specific phospholipasE C. Chain: null. Engineered VNG01560 cluster02 -> 1g1bA 7.2373815 164 / 88 conP: 0.170 NO-CATH VNG01560 cluster03 -> 1kptA0 5.6776355 105 / 88 conP: 0.172 CATH-ID: 3.30.430.10 Kp4 toxin. Chain: a, b. Synonym: p4 toxin, kp4 killer toxin VNG01560 cluster04 -> 1qaxA1 8.0117369 110 / 88 conP: 0.282 CATH-ID: 3.30.70.420 3-hydroxy-3-methylglutaryl-coenzyme a reductase. Chain: a, b. Engineer --end-- VNG01602 one-of-top-five-correct: 0.308578959270092 CThresh: 6.992274 64 best_is: cluster17 VNG01602 cluster00 -> 1c7kA0 5.3916192 132 / 90 conP: 0.125 CATH-ID: 3.40.390.10 Zinc endoprotease. Chain: a. Synonym: ncnp. Ec: 3.4.24.- VNG01602 cluster01 -> 1eg3A3 4.9375100 82 / 90 conP: 0.156 CATH-ID: 1.10.238.60 Dystrophin. Chain: a. Fragment: ww domain. Engineered: yes VNG01602 cluster02 -> 1ckv00 7.0682014 141 / 90 conP: 0.178 CATH-ID: 3.90.56.10 Protein b. Chain: null. Biological_unit: monomer VNG01602 cluster03 -> 1bwoA0 7.0003419 90 / 90 conP: 0.240 CATH-ID: 1.10.110.10 Nonspecific lipid-transfer protein. Chain: a, b. Synonym: ns-ltp1 VNG01602 cluster04 -> 1itg00 5.1163245 142 / 90 conP: 0.109 CATH-ID: 3.30.420.10 HIV-1 integrase (catalytic domain comprising residues 50 - 212) mutant VNG01602 cluster17 -> 1a0p01 8.2110601 91 / 90 conP: 0.308 CATH-ID: 1.10.150.130 Site-specific recombinase xerd. Chain: null. Engineered: yes --end-- VNG01604 one-of-top-five-correct: 0.512161273348618 CThresh: 3.962873 75 best_is: cluster03 VNG01604 cluster00 -> 1ej4A0 9.4995738 179 / 70 conP: 0.274 CATH-ID: 3.30.760.10 Eukaryotic initiation factor 4e. Chain: a. Fragment: residues 28-217. VNG01604 cluster01 -> 4proC2 7.8653379 75 / 70 conP: 0.400 CATH-ID: 3.30.300.50 Alpha-lytic protease. Chain: a, b, c, d. Fragment: chain a, b, mature VNG01604 cluster02 -> 1ftrA1 8.6570492 147 / 70 conP: 0.290 CATH-ID: 3.30.70.520 Formylmethanofuran\:tetrahydromethanopterin formyltransferase. Chain: VNG01604 cluster03 -> 1fvqA0 9.6343843 72 / 70 conP: 0.534 CATH-ID: 3.30.70.100 Copper-transporting atpase. Chain: a. Fragment: ccc2a domain. Engineer VNG01604 cluster04 -> 1hka00 6.9719998 158 / 70 conP: 0.183 CATH-ID: 3.30.70.560 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase. Chain: null. Syno --end-- VNG01605 one-of-top-five-correct: 0.355757955719054 CThresh: 6.997054 56 best_is: cluster15 VNG01605 cluster00 -> 1xsm00 7.5856062 288 / 111 conP: 0.124 CATH-ID: 1.10.620.20 Ribonucleotide reductase r2. Chain: null. Synonym: r2. Engineered: yes VNG01605 cluster01 -> 1tmkA0 7.3928210 204 / 111 conP: 0.185 CATH-ID: 3.40.50.300 Thymidylate kinase. Chain: a, b. Engineered: yes. Biological_unit: dim VNG01605 cluster02 -> 1jgiA 6.7150736 628 / 111 conP: 0.013 NO-CATH VNG01605 cluster03 -> 1ia8A 6.6022992 272 / 111 conP: 0.105 NO-CATH VNG01605 cluster04 -> 1cuk03 7.1534013 48 / 111 conP: 0.361 CATH-ID: 1.10.8.10 Ruva protein. Chain: null. Engineered: yes VNG01605 cluster15 -> 1a6dA1 8.3180059 244 / 111 conP: 0.187 CATH-ID: 1.10.560.10 Thermosome. Chain: a, b. Biological_unit: hexadecamer --end-- VNG01631 one-of-top-five-correct: 0.27292469892651 CThresh: 4.340241 75 best_is: cluster05 VNG01631 cluster00 -> 2mysA4 6.1665527 94 / 69 conP: 0.233 CATH-ID: 1.10.183.10 Myosin. Chain: a, b, c. Fragment: subfragment-1. Biological_unit: hexa VNG01631 cluster01 -> 1e79A3 5.7434573 131 / 69 conP: 0.156 CATH-ID: 1.20.150.20 Atp synthase alpha chain heart isoform. Chain: a, b, c. Synonym: bovin VNG01631 cluster02 -> 1ekjA0 5.7434573 210 / 69 conP: 0.077 CATH-ID: 3.40.1050.10 Beta-carbonic anhydrase. Chain: a, b, c, d, e, f, g, h. Ec: 4.2.1.1 VNG01631 cluster03 -> 1vom04 5.7434573 102 / 69 conP: 0.199 CATH-ID: 1.10.183.10 Myosin. Chain: null. Fragment: truncated at residue 762. Engineered: y VNG01631 cluster04 -> 1jdfA 5.3294384 442 / 69 conP: 0.007 NO-CATH VNG01631 cluster05 -> 1rypG0 7.0127434 244 / 69 conP: 0.078 CATH-ID: 3.60.20.10 20s proteasome. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, --end-- VNG0167h one-of-top-five-correct: 0.291860273759936 CThresh: 3.314349 75 best_is: cluster15 VNG0167h cluster00 -> 1lla01 6.7499816 357 / 51 conP: 0.008 CATH-ID: 1.10.639.10 Hemocyanin (subunit type ii) VNG0167h cluster01 -> 1fjhA0 5.3602307 236 / 51 conP: 0.027 CATH-ID: 3.40.50.720 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase. Chain: a, b. S VNG0167h cluster02 -> 119l00 5.8234810 162 / 51 conP: 0.079 CATH-ID: 1.10.530.40 Lysozyme mutant with cys 54 replaced by thr, cys 97 replaced by ala, a VNG0167h cluster03 -> 1yrgA0 6.5183565 343 / 51 conP: 0.009 CATH-ID: 3.80.10.10 Gtpase-activating protein rna1_schpo. Chain: a, b. Synonym: rna1p. Ran VNG0167h cluster04 -> 1jehA 4.6357506 478 / 51 conP: 0.001 NO-CATH VNG0167h cluster15 -> 1cy5A0 7.2132319 92 / 51 conP: 0.252 CATH-ID: 1.10.533.10 Apoptotic protease activating factor 1. Chain: a. Fragment: caspase re --end-- VNG0170c one-of-top-five-correct: 0.548437159579296 CThresh: 4.939297 75 best_is: cluster03 VNG0170c cluster00 -> 1dceB0 6.2803302 329 / 120 conP: 0.129 CATH-ID: 1.50.10.40 Rab geranylgeranyltransferase alpha subunit. Chain: a, c. Rab geranylg VNG0170c cluster01 -> 2tct01 7.6144395 65 / 120 conP: 0.503 CATH-ID: 1.10.10.60 Tetracycline repressor. Chain: null. Synonym: tet repressor, class d. VNG0170c cluster02 -> 2tct01 7.8298290 65 / 120 conP: 0.519 CATH-ID: 1.10.10.60 Tetracycline repressor. Chain: null. Synonym: tet repressor, class d. VNG0170c cluster03 -> 2tct01 9.3375551 65 / 120 conP: 0.625 CATH-ID: 1.10.10.60 Tetracycline repressor. Chain: null. Synonym: tet repressor, class d. VNG0170c cluster04 -> 1uaaA2 6.8162340 74 / 120 conP: 0.433 CATH-ID: 1.10.10.160 Atp-dependent DNA helicase rep. Chain: a, b. Engineered: yes. DNA (5'- --end-- VNG01742 one-of-top-five-correct: 0.331214863096429 CThresh: 7.543888 25 best_is: cluster15 VNG01742 cluster00 -> 1hjrA0 7.2213650 158 / 117 conP: 0.218 CATH-ID: 3.30.420.10 Holliday junction resolvase (ruvc) VNG01742 cluster01 -> 1qrjB1 7.3095954 114 / 117 conP: 0.272 CATH-ID: 1.10.375.10 His tag. Chain: a. Engineered: yes. Htlv-i capsid protein. Chain: b. E VNG01742 cluster02 -> 1aua01 5.4517962 213 / 117 conP: 0.108 CATH-ID: 3.40.525.10 Phosphatidylinositol transfer protein sec14p. Chain: null. Engineered: VNG01742 cluster03 -> 1xib00 5.7473480 388 / 117 conP: 0.044 CATH-ID: 3.20.20.150 D-xylose isomerase (ph 7.4) VNG01742 cluster04 -> 1mroA3 7.2904416 227 / 117 conP: 0.159 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: VNG01742 cluster15 -> 1mml02 8.1313356 146 / 117 conP: 0.281 CATH-ID: 3.30.70.270 Mmlv reverse transcriptase. Chain: null. Engineered: yes --end-- VNG01760 one-of-top-five-correct: 0.404238410736797 CThresh: 3.958117 75 best_is: cluster08 VNG01760 cluster00 -> 1ibrB0 5.5668870 458 / 68 conP: 0.006 CATH-ID: 1.25.30.20 Ran. Chain: a, c. Engineered: yes. Importin beta subunit. Chain: b, d. VNG01760 cluster01 -> 1cy5A0 7.7776607 92 / 68 conP: 0.345 CATH-ID: 1.10.533.10 Apoptotic protease activating factor 1. Chain: a. Fragment: caspase re VNG01760 cluster02 -> 1nkl00 6.4018932 78 / 68 conP: 0.291 CATH-ID: 1.10.225.10 Nk-lysin. Chain: null. Other_details: active by membrane-binding VNG01760 cluster03 -> 2tpt01 6.4168118 107 / 68 conP: 0.234 CATH-ID: 1.20.970.10 Thymidine phosphorylase. Chain: null. Biological_unit: dimer. Other_de VNG01760 cluster04 -> 1thg00 5.6747251 544 / 68 conP: 0.003 CATH-ID: 3.40.50.950 Lipase triacylglycerol hydrolase VNG01760 cluster08 -> 1hyp00 8.4828487 75 / 68 conP: 0.435 CATH-ID: 1.10.110.10 Hydrophobic protein from soybean --end-- VNG01811 one-of-top-five-correct: 0.541379052179319 CThresh: 4.137027 75 best_is: cluster12 VNG01811 cluster00 -> 1e7aA5 8.0655558 112 / 76 conP: 0.348 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG01811 cluster01 -> 1bia02 7.0476996 181 / 76 conP: 0.174 CATH-ID: 3.30.930.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG01811 cluster02 -> 1c3qA0 7.9751366 272 / 76 conP: 0.106 CATH-ID: 3.90.77.20 His tag. Chain: x, y, z. Synonym: thz kinase. Engineered: yes. Hydroxy VNG01811 cluster03 -> 1k5hA 9.0920344 398 / 76 conP: 0.049 NO-CATH VNG01811 cluster04 -> 1c3qA0 8.1805971 272 / 76 conP: 0.112 CATH-ID: 3.90.77.20 His tag. Chain: x, y, z. Synonym: thz kinase. Engineered: yes. Hydroxy VNG01811 cluster12 -> 1e7aA5 9.8976969 112 / 76 conP: 0.475 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes --end-- VNG01901 one-of-top-five-correct: 0.466847592950641 CThresh: 3.376650 75 best_is: cluster05 VNG01901 cluster00 -> 1vnc01 7.2453751 176 / 79 conP: 0.231 CATH-ID: 1.20.144.10 Vanadium-containing chloroperoxidase. Chain: null. Ec: 1.11.1.10 VNG01901 cluster01 -> 1ad600 7.0405547 185 / 79 conP: 0.208 CATH-ID: 1.10.472.10 Retinoblastoma tumor suppressor. Chain: null. Fragment: domain a. Engi VNG01901 cluster02 -> 2sas00 7.4484410 185 / 79 conP: 0.228 CATH-ID: 1.10.238.10 Sarcoplasmic calcium-binding protein (iso type ii) VNG01901 cluster03 -> 1ad600 7.4394910 185 / 79 conP: 0.227 CATH-ID: 1.10.472.10 Retinoblastoma tumor suppressor. Chain: null. Fragment: domain a. Engi VNG01901 cluster04 -> 1efdN2 7.4484410 171 / 79 conP: 0.250 CATH-ID: 3.90.630.10 Ferrichrome-binding periplasmic protein. Chain: n. Engineered: yes VNG01901 cluster05 -> 2sas00 8.6668368 185 / 79 conP: 0.295 CATH-ID: 1.10.238.10 Sarcoplasmic calcium-binding protein (iso type ii) --end-- VNG0194h one-of-top-five-correct: 0.330490540162456 CThresh: 2.015851 100 best_is: cluster07 VNG0194h cluster00 -> 1g4aA0 7.0498917 173 / 54 conP: 0.142 CATH-ID: 3.60.20.10 Atp-dependent hsl protease atp-binding subunit hslu. Chain: e, f. Syno VNG0194h cluster01 -> 1a6q01 6.4500044 294 / 54 conP: 0.028 CATH-ID: 3.60.40.10 Phosphatase 2c. Chain: null. Engineered: yes VNG0194h cluster02 -> 2pii00 6.1390610 112 / 54 conP: 0.219 CATH-ID: 3.30.70.120 Pii. Chain: null. Synonym: glnb product. Engineered: yes VNG0194h cluster03 -> 1g4aA0 6.1390610 173 / 54 conP: 0.113 CATH-ID: 3.60.20.10 Atp-dependent hsl protease atp-binding subunit hslu. Chain: e, f. Syno VNG0194h cluster04 -> 1dceA1 6.2252623 317 / 54 conP: 0.020 CATH-ID: 1.25.40.120 Rab geranylgeranyltransferase alpha subunit. Chain: a, c. Rab geranylg VNG0194h cluster07 -> 1ap700 7.0498917 168 / 54 conP: 0.150 CATH-ID: 1.25.40.20 P19-ink4d. Chain: null. Synonym: cyclin dependent kinase 4 inhibitor d --end-- VNG0196h one-of-top-five-correct: 0.482482967329664 CThresh: 5.124926 75 best_is: cluster13 VNG0196h cluster00 -> 1azsC2 5.2856856 115 / 85 conP: 0.181 CATH-ID: 1.10.400.10 Vc1. Chain: a. Fragment: c1a domain of adenylyl cyclase. Engineered: y VNG0196h cluster01 -> 1azsC2 5.8717074 115 / 85 conP: 0.208 CATH-ID: 1.10.400.10 Vc1. Chain: a. Fragment: c1a domain of adenylyl cyclase. Engineered: y VNG0196h cluster02 -> 1trlA0 6.6655592 62 / 85 conP: 0.338 CATH-ID: 1.10.390.10 Thermolysin fragment 255 - 316 (nmr, 8 structures) VNG0196h cluster03 -> 1qgkA 5.8428570 876 / 85 conP: 0.000 NO-CATH VNG0196h cluster04 -> 1fq1A0 6.4386783 183 / 85 conP: 0.150 CATH-ID: 3.90.190.10 Cyclin-dependent kinase inhibitor 3. Chain: a. Engineered: yes. Mutati VNG0196h cluster13 -> 2a3dA0 9.4947419 73 / 85 conP: 0.513 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes --end-- VNG01970 one-of-top-five-correct: 0.296658416275782 CThresh: 6.270199 75 best_is: cluster16 VNG01970 cluster00 -> 1ba500 6.9488945 53 / 84 conP: 0.313 CATH-ID: 1.10.10.60 Htrf1. Chain: null. Fragment: DNA-binding domain. Synonym: telomeric r VNG01970 cluster01 -> 1bob03 6.3667687 54 / 84 conP: 0.276 CATH-ID: 1.10.900.10 Histone acetyltransferase. Chain: null. Synonym: hat1. Engineered: yes VNG01970 cluster02 -> 1c4kA3 5.5072573 180 / 84 conP: 0.094 CATH-ID: 3.30.70.160 Ornithine decarboxylase. Chain: a. Engineered: yes. Mutation: yes VNG01970 cluster03 -> 1lylA2 6.2709937 342 / 84 conP: 0.033 CATH-ID: 3.40.690.10 Lysyl-tRNA synthetase (lysu). Chain: a, b, c. Lysine. Chain: x, y, z VNG01970 cluster04 -> 1ba500 6.9488945 53 / 84 conP: 0.313 CATH-ID: 1.10.10.60 Htrf1. Chain: null. Fragment: DNA-binding domain. Synonym: telomeric r VNG01970 cluster16 -> 1evyA 7.8655688 346 / 84 conP: 0.049 NO-CATH --end-- VNG0199h one-of-top-five-correct: 0.405665104594935 CThresh: 8.495285 25 best_is: cluster13 VNG0199h cluster00 -> 1hwxA1 6.7499816 51 / 121 conP: 0.279 CATH-ID: 1.20.15.110 Glutamate dehydrogenase. Chain: a, b, c, d, e, f. Synonym: gdh. Ec: 1. VNG0199h cluster01 -> 1a1w00 6.0467787 83 / 121 conP: 0.208 CATH-ID: 1.10.533.10 Fadd protein. Chain: null. Fragment: death effector domain. Synonym: f VNG0199h cluster02 -> 1hw7A 4.5865844 229 / 121 conP: 0.069 NO-CATH VNG0199h cluster03 -> 1bhmA0 5.4898276 198 / 121 conP: 0.103 CATH-ID: 3.40.91.20 Endonuclease bamhi. Chain: a, b. Synonym: r. Bamhi. Engineered: yes. D VNG0199h cluster04 -> 1pjcA2 7.0207366 176 / 121 conP: 0.169 CATH-ID: 3.40.50.720 L-alanine dehydrogenase. Chain: a. Engineered: yes. Biological_unit: h VNG0199h cluster13 -> 1ns1A0 9.3498790 73 / 121 conP: 0.419 CATH-ID: 1.10.287.10 Nonstructural protein 1. Chain: a, b. Fragment: RNA-binding domain, re --end-- VNG0205h one-of-top-five-correct: 0.370395504133393 CThresh: 6.884072 75 best_is: cluster07 VNG0205h cluster00 -> 1dik05 7.5299106 89 / 94 conP: 0.287 CATH-ID: 1.20.80.30 Pyruvate phosphate dikinase. Chain: null. Synonym: ppdk. Engineered: y VNG0205h cluster01 -> 1mioB2 5.7535576 104 / 94 conP: 0.177 CATH-ID: 3.40.50.10 Nitrogenase molybdenum-iron protein VNG0205h cluster02 -> 1avpA0 5.9418820 204 / 94 conP: 0.097 CATH-ID: 3.40.395.10 Adenoviral proteinase. Chain: a. Fragment: main. Synonym: avp. Enginee VNG0205h cluster03 -> 1hx8A 7.6368015 270 / 94 conP: 0.097 NO-CATH VNG0205h cluster04 -> 1jfgA 6.8617976 354 / 94 conP: 0.044 NO-CATH VNG0205h cluster07 -> 1dkxA2 8.8271612 80 / 94 conP: 0.385 CATH-ID: 1.20.120.110 Substrate binding domain of dnak. Chain: a. Biological_unit: dimer. Su --end-- VNG0207h one-of-top-five-correct: 0.43978097910891 CThresh: 5.596066 75 best_is: cluster02 VNG0207h cluster00 -> 1mbe00 6.6968813 52 / 117 conP: 0.413 CATH-ID: 1.10.10.60 Myb proto-oncogene protein. Domain: DNA-binding domain repeat 1. Other VNG0207h cluster01 -> 1idy00 6.5262976 54 / 117 conP: 0.398 CATH-ID: 1.10.10.60 MousE C-myb DNA-binding domain repeat 3. Chain: null. Engineered: yes. VNG0207h cluster02 -> 1ekrA0 8.5090209 143 / 117 conP: 0.407 CATH-ID: 3.30.70.640 Molybdenum cofactor biosynthesis protein c. Chain: a. Engineered: yes. VNG0207h cluster03 -> 1mbe00 6.9271692 52 / 117 conP: 0.429 CATH-ID: 1.10.10.60 Myb proto-oncogene protein. Domain: DNA-binding domain repeat 1. Other VNG0207h cluster04 -> 1mbe00 6.6968813 52 / 117 conP: 0.413 CATH-ID: 1.10.10.60 Myb proto-oncogene protein. Domain: DNA-binding domain repeat 1. Other --end-- VNG0210h one-of-top-five-correct: 0.420076865821428 CThresh: 2.392391 100 best_is: cluster11 VNG0210h cluster00 -> 1aisB1 6.7108836 99 / 66 conP: 0.329 CATH-ID: 1.10.472.10 Tata-binding protein. Chain: a. Fragment: residues 1 - 181. Synonym: t VNG0210h cluster01 -> 1bu2A2 6.7108836 102 / 66 conP: 0.322 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG0210h cluster02 -> 1vin01 7.5684895 139 / 66 conP: 0.292 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O VNG0210h cluster03 -> 1df0A 6.9252851 624 / 66 conP: 0.002 NO-CATH VNG0210h cluster04 -> 1rthA3 6.7702453 94 / 66 conP: 0.345 CATH-ID: 3.90.840.10 HIV-1 reverse transcriptase. Chain: a, b. Synonym: HIV-1 rt. Engineere VNG0210h cluster11 -> 1fnnA1 7.9972924 101 / 66 conP: 0.411 CATH-ID: 1.10.8.60 Cell division control protein 6. Chain: a, b. Synonym: cdc6p. Engineer --end-- VNG02130 one-of-top-five-correct: 0.281425440925986 CThresh: 6.949003 75 best_is: cluster02 VNG02130 cluster00 -> 1lmb30 6.4871374 87 / 96 conP: 0.234 CATH-ID: 1.10.260.10 Lambda repressor/operator complex VNG02130 cluster01 -> 1aci00 6.8641407 76 / 96 conP: 0.270 CATH-ID: 1.10.10.250 L11 ribosomal protein. Chain: null. Fragment: c-terminal domain, 76 re VNG02130 cluster02 -> 1jud02 7.6972042 75 / 96 conP: 0.321 CATH-ID: 1.10.164.10 L-2-haloacid dehalogenase. Chain: null. Engineered: yes VNG02130 cluster03 -> 1gejA0 7.0767699 399 / 96 conP: 0.036 CATH-ID: 1.10.630.10 Cytochrome p450 55a1. Chain: a. Engineered: yes VNG02130 cluster04 -> 1babA0 5.3542454 142 / 96 conP: 0.129 CATH-ID: 1.10.490.10 Hemoglobin thionville alpha chain mutant with val 1 replaced by glu an --end-- VNG0216h one-of-top-five-correct: 0.417811787214936 CThresh: 4.537349 75 best_is: cluster15 VNG0216h cluster00 -> 1ah100.man 5.5668870 128 / 68 conP: 0.144 NO-CATH VNG0216h cluster01 -> 1joeA 6.6990343 148 / 68 conP: 0.160 NO-CATH VNG0216h cluster02 -> 1f3vA0 7.4661194 158 / 68 conP: 0.176 CATH-ID: 3.30.70.680 Tumor necrosis factor receptor type 1 associated death domain protein. VNG0216h cluster03 -> 1ap800 8.1166614 213 / 68 conP: 0.128 CATH-ID: 3.30.760.10 Translation initiation factor eif4e. Chain: null. Engineered: yes VNG0216h cluster04 -> 4rhn00 5.5668870 115 / 68 conP: 0.162 CATH-ID: 3.30.428.10 Histidine triad nucleotide-binding protein. Chain: null. Synonym: hint VNG0216h cluster15 -> 2ifeA0 8.8990398 91 / 68 conP: 0.392 CATH-ID: 3.30.110.10 Translation initiation factor if3. Chain: a. Fragment: ribosome-bindin --end-- VNG02222 one-of-top-five-correct: 0.565299120992707 CThresh: 4.909440 75 best_is: cluster10 VNG02222 cluster00 -> 1thm00 7.7295335 279 / 109 conP: 0.192 CATH-ID: 3.40.50.200 Thermitase VNG02222 cluster01 -> 1f06A1 8.6878408 168 / 109 conP: 0.390 CATH-ID: 3.40.50.720 Meso-diaminopimelate d-dehydrogenase. Chain: a, b. Engineered: yes VNG02222 cluster02 -> 1moq01 8.5612476 218 / 109 conP: 0.309 CATH-ID: 3.40.50.1940 Glucosamine 6-phosphate synthase. Chain: null. Synonym: l-glutamine\:d VNG02222 cluster03 -> 1ybvA0 7.4897792 270 / 109 conP: 0.191 CATH-ID: 3.40.50.720 Trihydroxynaphthalene reductase. Chain: a, b. Synonym: naphthol reduct VNG02222 cluster04 -> 1jfrA0 7.8247685 260 / 109 conP: 0.217 CATH-ID: 3.40.50.950 Lipase. Chain: a, b. Engineered: yes VNG02222 cluster10 -> 1e79E2 9.7615704 276 / 109 conP: 0.304 CATH-ID: 3.40.50.300 Atp synthase alpha chain heart isoform. Chain: a, b, c. Synonym: bovin --end-- VNG0227h one-of-top-five-correct: 0.175306609148694 CThresh: 6.976274 55 best_is: cluster06 VNG0227h cluster00 -> 1e8cA 5.4551646 482 / 86 conP: 0.008 NO-CATH VNG0227h cluster01 -> 1qqjA 4.4817321 416 / 86 conP: 0.010 NO-CATH VNG0227h cluster02 -> 1jehA 5.3742703 478 / 86 conP: 0.008 NO-CATH VNG0227h cluster03 -> 1gcyA2 5.5958156 56 / 86 conP: 0.208 CATH-ID: 2.60.40.1180 Glucan 1,4-alpha-maltotetrahydrolase. Chain: a. Engineered: yes VNG0227h cluster04 -> 1fruA1 6.0117153 177 / 86 conP: 0.100 CATH-ID: 3.30.500.10 Fc (igg) receptor (neonatal) (orthorhombic crystal form) (fcrn) (extra VNG0227h cluster06 -> 1hnr00 6.2644251 47 / 86 conP: 0.255 CATH-ID: 4.10.430.10 H-ns (DNA-binding domain) (nmr, minimized average structure) --end-- VNG0233h one-of-top-five-correct: 0.715645521188148 CThresh: 2.441446 100 best_is: cluster03 VNG0233h cluster00 -> 1otgA0 10.544158 125 / 78 conP: 0.597 CATH-ID: 3.30.457.20 5-carboxymethyl-2-hydroxymuconate isomerase. Chain: a, b, c. Engineere VNG0233h cluster01 -> 1e8gA3 10.067138 231 / 78 conP: 0.333 CATH-ID: 3.40.462.10 Vanillyl-alcohol oxidase. Chain: a, b. Synonym: aryl-alcohol oxidase, VNG0233h cluster02 -> 1otgA0 9.9326050 125 / 78 conP: 0.554 CATH-ID: 3.30.457.20 5-carboxymethyl-2-hydroxymuconate isomerase. Chain: a, b, c. Engineere VNG0233h cluster03 -> 1bia02 11.155712 181 / 78 conP: 0.517 CATH-ID: 3.30.930.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG0233h cluster04 -> 1e8gA3 10.411055 231 / 78 conP: 0.355 CATH-ID: 3.40.462.10 Vanillyl-alcohol oxidase. Chain: a, b. Synonym: aryl-alcohol oxidase, --end-- VNG0237h one-of-top-five-correct: 0.183609716596381 CThresh: 3.916410 75 best_is: cluster08 VNG0237h cluster00 -> 1qmpA0 5.7666012 125 / 43 conP: 0.078 CATH-ID: 3.40.50.3000 Spo0a. Chain: a, b, c, d. Fragment: receiver domain. Engineered: yes. VNG0237h cluster01 -> 1cr4A0 4.5483231 243 / 43 conP: 0.009 CATH-ID: 3.40.50.300 DNA primase/helicase. Chain: a. Fragment: helicase domain. Engineered: VNG0237h cluster02 -> 1eulA4 5.2792900 156 / 43 conP: 0.043 CATH-ID: 3.40.50.1000 Calcium-transporting atpase sarcoplasmic reticulum type, fast twitch s VNG0237h cluster03 -> 1g2iA0 5.0356344 162 / 43 conP: 0.036 CATH-ID: 3.40.50.1090 Protease i. Chain: a, b, c. Engineered: yes VNG0237h cluster04 -> 1ad202 4.7919787 93 / 43 conP: 0.097 CATH-ID: 3.40.50.790 Ribosomal protein l1. Chain: null. Synonym: tl2. Engineered: yes. Muta VNG0237h cluster08 -> 1uroA0 6.0102569 357 / 43 conP: 0.002 CATH-ID: 3.20.20.210 Uroporphyrinogen decarboxylase. Chain: a. Synonym: uro-d, urod. Engine --end-- VNG0238h one-of-top-five-correct: 0.476452153618104 CThresh: 4.928962 75 best_is: cluster09 VNG0238h cluster00 -> 1bu2A1 6.0920640 112 / 71 conP: 0.185 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG0238h cluster01 -> 1qqeA0 8.2743531 281 / 71 conP: 0.075 CATH-ID: 1.25.40.10 Vesicular transport protein sec17. Chain: a. Engineered: yes. Mutation VNG0238h cluster02 -> 1ayx00 7.9806556 492 / 71 conP: 0.009 CATH-ID: 1.50.10.30 Glucoamylase. Chain: null. Engineered: yes VNG0238h cluster03 -> 1bu2A1 6.9320001 112 / 71 conP: 0.224 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG0238h cluster04 -> 1aoa01 6.0930756 118 / 71 conP: 0.176 CATH-ID: 1.10.418.10 T-fimbrin. Chain: null. Fragment: abd1 VNG0238h cluster09 -> 1e7aA6 9.6585045 78 / 71 conP: 0.470 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes --end-- VNG0239c one-of-top-five-correct: 0.253211734624103 CThresh: 6.948806 31 best_is: cluster05 VNG0239c cluster00 -> 1bowA0 4.9176650 143 / 104 conP: 0.129 CATH-ID: 3.20.80.10 Multidrug-efflux transporter 1 regulator bmrr. Chain: a. Fragment: mul VNG0239c cluster01 -> 1b0zA2 6.1032205 184 / 104 conP: 0.136 CATH-ID: 3.40.50.1890 Phosphoglucose isomerase. Chain: a. Synonym: glucose-6-phosphate isome VNG0239c cluster02 -> 3daaA2 4.8389603 159 / 104 conP: 0.115 CATH-ID: 3.20.10.10 D-amino acid aminotransferase. Chain: a, b. Engineered: yes. Biologica VNG0239c cluster03 -> 1colA0 5.1693300 197 / 104 conP: 0.100 CATH-ID: 1.10.490.30 Colicin A (c-terminal domain) (pore-forming domain) VNG0239c cluster04 -> 1qmmA5 6.2199194 194 / 104 conP: 0.133 CATH-ID: 1.10.1070.11 Phosphatidylinositol 3-kinase catalytic subunit. Chain: a. Fragment: p VNG0239c cluster05 -> 1bebA0 7.1203219 156 / 104 conP: 0.204 CATH-ID: 2.40.128.20 Beta-lactoglobulin. Chain: a, b. Biological_unit: predominantly dimeri --end-- VNG02400 one-of-top-five-correct: 0.371311866783542 CThresh: 6.994962 33 best_is: cluster09 VNG02400 cluster00 -> 1ho1C0 6.8532064 242 / 111 conP: 0.132 CATH-ID: 3.20.20.320 Pyridoxine 5'-phosphate synthase. Chain: a, b, c, d. Synonym: pyridoxa VNG02400 cluster01 -> 1b7eA1 7.0381593 246 / 111 conP: 0.136 CATH-ID: 3.90.350.10 Transposase inhibitor protein from tn5. Chain: a. Engineered: yes VNG02400 cluster02 -> 1smaA3 6.7697739 81 / 111 conP: 0.292 CATH-ID: 2.60.40.1180 Maltogenic amylase. Chain: a, b. Fragment: n-domain, barrel, c-domain VNG02400 cluster03 -> 1schA1 5.7313955 158 / 111 conP: 0.158 CATH-ID: 1.10.520.10 Peanut peroxidase, major cationic isozyme. Chain: a, b. Synonym: pnp. VNG02400 cluster04 -> 1ad600 6.1208067 185 / 111 conP: 0.150 CATH-ID: 1.10.472.10 Retinoblastoma tumor suppressor. Chain: null. Fragment: domain a. Engi VNG02400 cluster09 -> 1ivyA0 8.5011059 452 / 111 conP: 0.061 CATH-ID: 3.40.50.950 Human protective protein. Chain: a, b. Synonym: protective protein/cat --end-- VNG02401 one-of-top-five-correct: 0.374025158191717 CThresh: 6.912118 75 best_is: cluster01 VNG02401 cluster00 -> 1e25A0 6.1891715 270 / 113 conP: 0.101 CATH-ID: 3.40.710.10 Extended-spectrum beta-lactamase per-1. Chain: a. Engineered: yes. Mut VNG02401 cluster01 -> 1av401 8.4497663 87 / 113 conP: 0.401 CATH-ID: 3.10.30.70 Amine oxidase. Chain: null. Synonym: agao. Biological_unit: dimer VNG02401 cluster02 -> 1fsz01 5.7691899 212 / 113 conP: 0.125 CATH-ID: 3.40.50.1440 Ftsz. Chain: null. Synonym: sulb. Engineered: yes VNG02401 cluster03 -> 1fsz01 5.8311511 212 / 113 conP: 0.127 CATH-ID: 3.40.50.1440 Ftsz. Chain: null. Synonym: sulb. Engineered: yes VNG02401 cluster04 -> 1auoA0 6.0750166 218 / 113 conP: 0.131 CATH-ID: 3.40.50.950 Carboxylesterase. Chain: a, b. Engineered: yes. Biological_unit: dimer --end-- VNG02430 one-of-top-five-correct: 0.131052302585522 CThresh: 8.651814 25 best_is: cluster07 VNG02430 cluster00 -> 1hdmB1 4.2066614 84 / 112 conP: 0.118 CATH-ID: 3.10.320.10 Class ii histocompatibility antigen, m alpha chain. Chain: a. Fragment VNG02430 cluster01 -> 1gtxA1 4.6369871 167 / 112 conP: 0.083 CATH-ID: 3.30.70.160 4-aminobutyrate aminotransferase. Chain: a, b, c, d. Synonym: gaba-at. VNG02430 cluster02 -> 1hlm00 4.9518403 158 / 112 conP: 0.095 CATH-ID: 1.10.490.10 Hemoglobin (cyano-met) (sea cucumber) VNG02430 cluster03 -> 1a0i01 5.3673824 230 / 112 conP: 0.070 CATH-ID: 3.90.410.10 DNA ligase. Chain: null. Engineered: yes. Mutation: m2v VNG02430 cluster04 -> 1dm9A0 3.5359119 104 / 112 conP: 0.089 CATH-ID: 3.10.290.10 Hypothetical 15.5 kd protein in mrca-pcka intergenic region. Chain: a, VNG02430 cluster07 -> 1euhA1 5.4927076 274 / 112 conP: 0.056 CATH-ID: 3.40.605.10 NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrog --end-- VNG02470 one-of-top-five-correct: 0.363784192809372 CThresh: 6.018209 75 best_is: cluster06 VNG02470 cluster00 -> 1lmb30 7.6609070 87 / 117 conP: 0.406 CATH-ID: 1.10.260.10 Lambda repressor/operator complex VNG02470 cluster01 -> 1tc3C0 5.8234810 51 / 117 conP: 0.333 CATH-ID: 1.10.10.60 DNA. Chain: a, b. Engineered: yes. Tc3 transposase. Chain: c. Fragment VNG02470 cluster02 -> 1fadA0 5.7635258 95 / 117 conP: 0.274 CATH-ID: 1.10.533.10 Fadd protein. Chain: a. Fragment: death domain (residues 89-183). Engi VNG02470 cluster03 -> 1kdxA0 5.9636418 81 / 117 conP: 0.303 CATH-ID: 1.10.246.20 Cbp. Chain: a. Fragment: kix, residues 586-666. Synonym: creb-binding VNG02470 cluster04 -> 1octC1 6.4525499 71 / 117 conP: 0.347 CATH-ID: 1.10.260.10 Oct-1 (pou domain) VNG02470 cluster06 -> 1octC1 7.8328626 71 / 117 conP: 0.442 CATH-ID: 1.10.260.10 Oct-1 (pou domain) --end-- VNG02550 one-of-top-five-correct: 0.32333009725056 CThresh: 4.458191 75 best_is: cluster15 VNG02550 cluster00 -> 1l0bA 4.8826068 190 / 63 conP: 0.058 NO-CATH VNG02550 cluster01 -> 1u2fA0 6.6220014 90 / 63 conP: 0.236 CATH-ID: 3.30.70.330 Splicing factor u2af 65 kd subunit. Chain: a. Fragment: first RNA-bind VNG02550 cluster02 -> 1pfkA1 6.4045771 189 / 63 conP: 0.088 CATH-ID: 3.40.50.450 Phosphofructokinase (r-state) complex with fructose-1,6-bisphosphate a VNG02550 cluster03 -> 1ay200 5.9697284 158 / 63 conP: 0.107 CATH-ID: 3.30.700.10 Type 4 pilin. Chain: null. Synonym: fimbriae. Biological_unit: fiber-f VNG02550 cluster04 -> 1sacA0 5.7523041 204 / 63 conP: 0.064 CATH-ID: 2.60.120.60 Serum amyloid p component (sap) VNG02550 cluster15 -> 119l00 7.8634976 162 / 63 conP: 0.166 CATH-ID: 1.10.530.40 Lysozyme mutant with cys 54 replaced by thr, cys 97 replaced by ala, a --end-- VNG0258h one-of-top-five-correct: 0.289321623767547 CThresh: 7.876953 25 best_is: cluster18 VNG0258h cluster00 -> 1hy1A3 6.4750260 72 / 115 conP: 0.255 CATH-ID: 1.10.40.30 Delta crystallin ii. Chain: a, b, c, d. Synonym: delta-2-crystallin, a VNG0258h cluster01 -> 1gkxA 5.3057594 308 / 115 conP: 0.055 NO-CATH VNG0258h cluster02 -> 1vin02 6.1486661 113 / 115 conP: 0.195 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O VNG0258h cluster03 -> 1ec5A0 6.9175592 48 / 115 conP: 0.310 CATH-ID: 1.20.15.30 Four-helix bundle model. Chain: a, b, c. Engineered: yes. Other_detail VNG0258h cluster04 -> 1tfe02 5.2590331 45 / 115 conP: 0.221 CATH-ID: 1.20.12.10 Elongation factor ts. Chain: null. Fragment: ef-ts dimerization domain VNG0258h cluster18 -> 1hb6A 7.7914025 86 / 115 conP: 0.315 NO-CATH --end-- VNG0261h one-of-top-five-correct: 0.218521691203212 CThresh: 4.634601 75 best_is: cluster04 VNG0261h cluster00 -> 1ab401 5.1286056 271 / 51 conP: 0.012 CATH-ID: 3.90.199.10 Gyrase a. Chain: null. Fragment: 59kda fragment. Engineered: yes. Biol VNG0261h cluster01 -> 1g3sA 5.5918559 212 / 51 conP: 0.029 NO-CATH VNG0261h cluster02 -> 1i9tA0 4.4337301 189 / 51 conP: 0.029 CATH-ID: 3.90.190.10 mRNA capping enzyme. Chain: a. Fragment: tpase domain (residues 1-210) VNG0261h cluster03 -> 1a36A4 4.4337301 96 / 51 conP: 0.096 CATH-ID: 1.10.132.10 Topoisomerase i. Chain: a. Fragment: core domain and c-terminal domain VNG0261h cluster04 -> 1knyA2 6.7499816 128 / 51 conP: 0.118 CATH-ID: 1.20.30.20 Kanamycin nucleotidyltransferase. Chain: a, b. Synonym: kntase. Engine --end-- VNG02621 one-of-top-five-correct: 0.302671316721589 CThresh: 3.001925 97 best_is: cluster10 VNG02621 cluster00 -> 1e8xA3 6.1374138 185 / 51 conP: 0.069 CATH-ID: 1.25.40.110 Phosphatidylinositol 3-kinase catalytic subunit. Chain: a. Fragment: p VNG02621 cluster01 -> 1d5rA1 5.8234810 174 / 51 conP: 0.073 CATH-ID: 3.90.190.10 Phosphoinositide phosphotase pten. Chain: a. Fragment: residues 7-353. VNG02621 cluster02 -> 1a36A4 5.3602307 96 / 51 conP: 0.167 CATH-ID: 1.10.132.10 Topoisomerase i. Chain: a. Fragment: core domain and c-terminal domain VNG02621 cluster03 -> 1dik05 6.2867313 89 / 51 conP: 0.224 CATH-ID: 1.20.80.30 Pyruvate phosphate dikinase. Chain: null. Synonym: ppdk. Engineered: y VNG02621 cluster04 -> 1a36A4 6.0551062 96 / 51 conP: 0.197 CATH-ID: 1.10.132.10 Topoisomerase i. Chain: a. Fragment: core domain and c-terminal domain VNG02621 cluster10 -> 1gca02 7.2132319 161 / 51 conP: 0.123 CATH-ID: 3.40.50.2500 Glucose/galactose-binding protein complex with galactose --end-- VNG02641 one-of-top-five-correct: 0.333251111340706 CThresh: 6.992578 36 best_is: cluster09 VNG02641 cluster00 -> 1tfe02 5.8969285 45 / 99 conP: 0.263 CATH-ID: 1.20.12.10 Elongation factor ts. Chain: null. Fragment: ef-ts dimerization domain VNG02641 cluster01 -> 1utg00 4.8656881 70 / 99 conP: 0.182 CATH-ID: 1.10.210.10 Uteroglobin (oxidized) VNG02641 cluster02 -> 1qqtA3 5.8514305 138 / 99 conP: 0.155 CATH-ID: 1.10.730.10 Methionyl-tRNA synthetase. Chain: a. Fragment: truncated fragment, res VNG02641 cluster03 -> 1hy1A3 7.5192609 72 / 99 conP: 0.321 CATH-ID: 1.10.40.30 Delta crystallin ii. Chain: a, b, c, d. Synonym: delta-2-crystallin, a VNG02641 cluster04 -> 1fz1F2 7.6860523 73 / 99 conP: 0.330 CATH-ID: 1.20.88.10 Methane monooxygenase component a, alpha chain. Chain: a, b. Synonym: VNG02641 cluster09 -> 1qaxA2 8.3163042 260 / 99 conP: 0.136 CATH-ID: 3.90.770.10 3-hydroxy-3-methylglutaryl-coenzyme a reductase. Chain: a, b. Engineer --end-- VNG02642 one-of-top-five-correct: 0.21306370208604 CThresh: 5.629035 75 best_is: cluster10 VNG02642 cluster00 -> 1jweA0 4.5701080 114 / 63 conP: 0.091 CATH-ID: 1.10.860.10 Dnab helicase. Chain: a. Fragment: n-terminal domain. Engineered: yes. VNG02642 cluster01 -> 1h8vA0 6.6220014 217 / 63 conP: 0.055 CATH-ID: 2.60.120.180 Endo-beta-1,4-glucanase. Chain: a, b, c, d, e, f. Fragment: residues 1 VNG02642 cluster02 -> 1bpb02 5.3174554 114 / 63 conP: 0.111 CATH-ID: 3.30.460.10 DNA polymerase beta (beta polymerase) (apo, 31kd domain) VNG02642 cluster03 -> 1lddA 5.8308778 74 / 63 conP: 0.184 NO-CATH VNG02642 cluster04 -> 1fts01 4.6651824 84 / 63 conP: 0.126 CATH-ID: 1.20.120.140 Ftsy. Chain: null. Fragment: ng-domain residues 197 - 497. Engineered: VNG02642 cluster10 -> 1c4xA0 6.8394257 281 / 63 conP: 0.029 CATH-ID: 3.40.50.950 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Chain: a. Synonym --end-- VNG02711 one-of-top-five-correct: 0.503451487001558 CThresh: 4.844864 75 best_is: cluster18 VNG02711 cluster00 -> 1c5200 7.5924436 131 / 108 conP: 0.372 CATH-ID: 1.10.1250.10 Cytochrome-c552. Chain: null. Other_details: oxidized state (fe+++) VNG02711 cluster01 -> 1mroA3 8.8018472 227 / 108 conP: 0.311 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: VNG02711 cluster02 -> 1hbg00 7.9996163 147 / 108 conP: 0.375 CATH-ID: 1.10.490.10 Hemoglobin (carbon monoxy) VNG02711 cluster03 -> 1rdr03 7.1728400 81 / 108 conP: 0.421 CATH-ID: 1.20.960.20 Poliovirus 3d polymerase. Chain: null. Engineered: yes VNG02711 cluster04 -> 1ecmA0 6.7571881 91 / 108 conP: 0.376 CATH-ID: 1.20.59.10 Endo-oxabicyclic transition state analogue. Chain: a, b. Domain: chori VNG02711 cluster18 -> 1ecmA0 9.0737013 91 / 108 conP: 0.541 CATH-ID: 1.20.59.10 Endo-oxabicyclic transition state analogue. Chain: a, b. Domain: chori --end-- VNG02741 one-of-top-five-correct: 0.352082280981925 CThresh: 3.444346 75 best_is: cluster11 VNG02741 cluster00 -> 1a6f00 7.2775994 113 / 54 conP: 0.217 CATH-ID: 3.30.230.10 Ribonuclease p protein. Chain: null. Synonym: rnase p protein. Enginee VNG02741 cluster01 -> 1de6A0 7.5053070 416 / 54 conP: 0.006 CATH-ID: 3.20.20.310 L-rhamnose isomerase. Chain: a, b, c, d. Engineered: yes VNG02741 cluster02 -> 1a6f00 7.1915739 113 / 54 conP: 0.213 CATH-ID: 3.30.230.10 Ribonuclease p protein. Chain: null. Synonym: rnase p protein. Enginee VNG02741 cluster03 -> 1a6f00 6.8143219 113 / 54 conP: 0.195 CATH-ID: 3.30.230.10 Ribonuclease p protein. Chain: null. Synonym: rnase p protein. Enginee VNG02741 cluster04 -> 2chsA0 6.8221840 114 / 54 conP: 0.194 CATH-ID: 3.30.70.130 Chorismate mutase VNG02741 cluster11 -> 1uroA0 7.9607224 357 / 54 conP: 0.014 CATH-ID: 3.20.20.210 Uroporphyrinogen decarboxylase. Chain: a. Synonym: uro-d, urod. Engine --end-- VNG0282h one-of-top-five-correct: 0.204386015630811 CThresh: 4.125019 75 best_is: cluster16 VNG0282h cluster00 -> 1znbA0 5.5918559 228 / 51 conP: 0.026 CATH-ID: 3.60.15.10 Metallo-beta-lactamase. Chain: a, b. Synonym: class b beta-lactamase. VNG0282h cluster01 -> 1ik3A 5.1286056 836 / 51 conP: 0.000 NO-CATH VNG0282h cluster02 -> 1paz00 5.5918559 120 / 51 conP: 0.107 CATH-ID: 2.60.40.420 Pseudoazurin (oxidized cu ++ at p H 6.8) VNG0282h cluster03 -> 1gajA0 4.5252285 253 / 51 conP: 0.014 CATH-ID: 3.40.50.300 High-affinity branched chain amino acid transport atp-binding protein. VNG0282h cluster04 -> 1gg4A 5.5918559 430 / 51 conP: 0.002 NO-CATH VNG0282h cluster16 -> 1gg4A 6.2867313 430 / 51 conP: 0.002 NO-CATH --end-- VNG0285c one-of-top-five-correct: 0.497086628851934 CThresh: 6.323512 75 best_is: cluster01 VNG0285c cluster00 -> 1hz6A0 7.0965607 67 / 128 conP: 0.406 CATH-ID: 3.10.20.210 Protein l. Chain: a, b, c. Fragment: b1 domain. Synonym: ig kappa ligh VNG0285c cluster01 -> 1mnmA 9.2191779 85 / 128 conP: 0.533 NO-CATH VNG0285c cluster02 -> 1be3B1 6.7550033 215 / 128 conP: 0.216 CATH-ID: 3.30.830.10 Cytochrome bc1 complex. Chain: a, b, c, d, e, f, g, h, i, j, k. Synony VNG0285c cluster03 -> 1dqaA3 9.1869616 117 / 128 conP: 0.487 CATH-ID: 3.30.70.420 Hmg-coa reductase. Chain: a, b, c, d. Fragment: catalytic portion. Eng VNG0285c cluster04 -> 1sesA2 6.0576550 318 / 128 conP: 0.114 CATH-ID: 3.40.690.10 Seryl-tRNA synthetase (serine-tRNA ligase) complexed with seryl-hydrox --end-- VNG02860 one-of-top-five-correct: 0.318064243482305 CThresh: 7.326520 25 best_is: cluster02 VNG02860 cluster00 -> 1eemA2 7.2530516 115 / 106 conP: 0.249 CATH-ID: 1.20.1050.10 Glutathione-s-transferase. Chain: a. Engineered: yes VNG02860 cluster01 -> 1mdl01 6.1948627 126 / 106 conP: 0.185 CATH-ID: 3.30.390.10 Mandelate racemase. Chain: null. Engineered: yes. Mutation: k166r VNG02860 cluster02 -> 1hbg00 8.1190145 147 / 106 conP: 0.256 CATH-ID: 1.10.490.10 Hemoglobin (carbon monoxy) VNG02860 cluster03 -> 1rypB0 6.3269154 250 / 106 conP: 0.094 CATH-ID: 3.60.20.10 20s proteasome. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, VNG02860 cluster04 -> 1a7602 5.4153240 60 / 106 conP: 0.219 CATH-ID: 1.10.150.20 Flap endonuclease-1 protein. Chain: null --end-- VNG0287h one-of-top-five-correct: 0.224245925153725 CThresh: 6.900653 75 best_is: cluster08 VNG0287h cluster00 -> 1yrnA0 6.6258584 49 / 90 conP: 0.285 CATH-ID: 1.10.10.60 Mating-type protein a-1. Chain: a. Domain: homeodomain. Synonym: mat a VNG0287h cluster01 -> 1d0nA6 4.8624524 127 / 90 conP: 0.115 CATH-ID: 3.40.20.10 Horse plasma gelsolin. Chain: a, b VNG0287h cluster02 -> 1qqgA1 5.5244352 103 / 90 conP: 0.160 CATH-ID: 2.30.29.30 Insulin receptor substrate 1. Chain: a, b. Fragment: ph-ptb (n-termina VNG0287h cluster03 -> 2pia03 6.4228475 96 / 90 conP: 0.207 CATH-ID: 3.10.20.30 Phthalate dioxygenase reductase VNG0287h cluster04 -> 1fsz01 5.7018876 212 / 90 conP: 0.079 CATH-ID: 3.40.50.1440 Ftsz. Chain: null. Synonym: sulb. Engineered: yes VNG0287h cluster08 -> 1dj2A2 6.9805284 99 / 90 conP: 0.230 CATH-ID: 1.10.300.10 Adenylosuccinate synthetase. Chain: a, b. Engineered: yes --end-- VNG0293h one-of-top-five-correct: 0.481718653172334 CThresh: 3.985770 75 best_is: cluster00 VNG0293h cluster00 -> 1ddbA0 8.9014314 195 / 88 conP: 0.312 CATH-ID: 1.10.437.10 Bid. Chain: a. Engineered: yes. Biological_unit: monomer VNG0293h cluster01 -> 1c9bA2 7.1451597 106 / 88 conP: 0.357 CATH-ID: 1.10.472.10 General transcription factor iib. Chain: a, e, i, m, q. Fragment: c-te VNG0293h cluster02 -> 1yrnA0 6.1399515 49 / 88 conP: 0.395 CATH-ID: 1.10.10.60 Mating-type protein a-1. Chain: a. Domain: homeodomain. Synonym: mat a VNG0293h cluster03 -> 1bia01 7.0121161 64 / 88 conP: 0.427 CATH-ID: 1.10.10.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG0293h cluster04 -> 1pdnC1 6.6292930 68 / 88 conP: 0.393 CATH-ID: 1.10.10.10 Prd paired domain. Chain: c. DNA. Chain: a, b --end-- VNG02961 one-of-top-five-correct: 0.322899834116917 CThresh: 8.426929 25 best_is: cluster12 VNG02961 cluster00 -> 8abp02 4.1295990 167 / 128 conP: 0.095 CATH-ID: 3.40.50.2600 L- Arabinose-binding protein (mutant with met 108 replaced by leu) ( M VNG02961 cluster01 -> 1e7aA2 8.1425828 90 / 128 conP: 0.336 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG02961 cluster02 -> 1cf7B0 5.1661440 82 / 128 conP: 0.183 CATH-ID: 1.10.10.10 Transcription factor e2f-4. Chain: a. Fragment: DNA-binding domain. En VNG02961 cluster03 -> 1qo0D2 5.4474831 46 / 128 conP: 0.228 CATH-ID: 1.10.15.10 Amic. Chain: a, b. Fragment: amide receptor. Engineered: yes. Other_de VNG02961 cluster04 -> 1jkw02 5.0908451 101 / 128 conP: 0.165 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y VNG02961 cluster12 -> 1t7pA4 8.1779003 101 / 128 conP: 0.325 CATH-ID: 1.10.473.10 DNA polymerase. Chain: a. Engineered: yes. Mutation: del(118-123). Thi --end-- VNG02970 one-of-top-five-correct: 0.459827109270111 CThresh: 6.865915 75 best_is: cluster10 VNG02970 cluster00 -> 1vhrA0 8.6152348 178 / 84 conP: 0.185 CATH-ID: 3.90.190.10 Human vh1-related dual-specificity phosphatase vhr. Chain: a, b. Synon VNG02970 cluster01 -> 1dtwA0 7.5615109 382 / 84 conP: 0.030 CATH-ID: 3.40.50.970 Branched-chain alpha-keto acid dehydrogenase alpha subunit. Chain: a. VNG02970 cluster02 -> 1nzyA 5.3112533 269 / 84 conP: 0.039 NO-CATH VNG02970 cluster03 -> 1fezA1 6.0716718 178 / 84 conP: 0.098 CATH-ID: 3.40.50.1000 Phosphonoacetaldehyde hydrolase. Chain: a, b, c, d. Engineered: yes VNG02970 cluster04 -> 8abp01 6.6696375 138 / 84 conP: 0.153 CATH-ID: 3.40.50.3100 L- Arabinose-binding protein (mutant with met 108 replaced by leu) ( M VNG02970 cluster10 -> 1thfD0 10.058110 253 / 84 conP: 0.155 CATH-ID: 3.20.20.90 Hisf protein. Chain: d. Fragment: cyclase subunit. Synonym: imidazoleg --end-- VNG02980 one-of-top-five-correct: 0.612926332300481 CThresh: 4.417105 75 best_is: cluster01 VNG02980 cluster00 -> 1esc00 8.5429284 302 / 82 conP: 0.113 CATH-ID: 3.40.50.1110 Esterase. Chain: null VNG02980 cluster01 -> 1gai00 10.692208 472 / 82 conP: 0.053 CATH-ID: 1.50.10.30 Glucoamylase-471. Chain: null. Fragment: residues 1-471. Synonym: gluc VNG02980 cluster02 -> 1a8rA1 6.9394743 85 / 82 conP: 0.339 CATH-ID: 1.10.286.10 Gtp cyclohydrolase i. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, VNG02980 cluster03 -> 1jkw02 6.9277893 101 / 82 conP: 0.308 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y VNG02980 cluster04 -> 1ecmA0 9.0779726 91 / 82 conP: 0.474 CATH-ID: 1.20.59.10 Endo-oxabicyclic transition state analogue. Chain: a, b. Domain: chori --end-- VNG02981 one-of-top-five-correct: 0.59639438928053 CThresh: 5.925058 75 best_is: cluster04 VNG02981 cluster00 -> 1ecmA0 8.7874429 91 / 117 conP: 0.486 CATH-ID: 1.20.59.10 Endo-oxabicyclic transition state analogue. Chain: a, b. Domain: chori VNG02981 cluster01 -> 1fjgT0 7.7659720 99 / 117 conP: 0.401 CATH-TRUNC VNG02981 cluster02 -> 1fjgT0 7.8516864 99 / 117 conP: 0.407 CATH-TRUNC VNG02981 cluster03 -> 1cbzA1 9.1503697 315 / 117 conP: 0.215 CATH-ID: 3.40.605.10 Aldehyde dehydrogenase. Chain: a, b, c, d. Synonym: aldh. Engineered: VNG02981 cluster04 -> 2a3dA0 10.389771 73 / 117 conP: 0.625 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes --end-- VNG0311h one-of-top-five-correct: 0.181410964544513 CThresh: 9.434535 25 best_is: cluster10 VNG0311h cluster00 -> 1dekA2 5.9906695 121 / 132 conP: 0.161 CATH-ID: 1.10.238.70 Deoxynucleoside monophosphate kinase. Chain: a, b. Engineered: yes VNG0311h cluster01 -> 1cpy02 6.0573320 72 / 132 conP: 0.202 CATH-ID: 1.20.1030.10 Serine carboxypeptidase. Chain: null. Mutation: e65a, e145a VNG0311h cluster02 -> 1a0oF0 5.3203619 69 / 132 conP: 0.172 CATH-ID: 3.30.70.400 Chey. Chain: a, c, e, g. Engineered: yes. Chea. Chain: b, d, f, h. Fra VNG0311h cluster03 -> 1e7aA5 5.0686973 112 / 132 conP: 0.134 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG0311h cluster04 -> 1qrjB2 5.4127960 81 / 132 conP: 0.167 CATH-ID: 1.10.1200.30 His tag. Chain: a. Engineered: yes. Htlv-i capsid protein. Chain: b. E VNG0311h cluster10 -> 1cuk03 6.4458751 48 / 132 conP: 0.244 CATH-ID: 1.10.8.10 Ruva protein. Chain: null. Engineered: yes --end-- VNG0312h one-of-top-five-correct: 0.272368237709008 CThresh: 6.960268 31 best_is: cluster00 VNG0312h cluster00 -> 1ocrE0 7.5329298 109 / 98 conP: 0.266 CATH-ID: 1.25.40.40 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, VNG0312h cluster01 -> 1rdr03 5.7953092 81 / 98 conP: 0.211 CATH-ID: 1.20.960.20 Poliovirus 3d polymerase. Chain: null. Engineered: yes VNG0312h cluster02 -> 1rypL0 4.5453988 212 / 98 conP: 0.068 CATH-ID: 3.60.20.10 20s proteasome. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, VNG0312h cluster03 -> 1dpsA0 5.8767511 159 / 98 conP: 0.136 CATH-TRUNC VNG0312h cluster04 -> 1tib00 4.8493663 269 / 98 conP: 0.051 CATH-ID: 3.40.50.950 Lipase (triacylglycerol acylhydrolase) --end-- VNG0319h one-of-top-five-correct: 0.542949999600901 CThresh: 4.546865 75 best_is: cluster02 VNG0319h cluster00 -> 1az902 5.2147154 266 / 79 conP: 0.055 CATH-ID: 3.90.230.10 Aminopeptidase p. Chain: null. Synonym: ampp. Biological_unit: homotet VNG0319h cluster01 -> 1abv00 5.4177814 105 / 79 conP: 0.204 CATH-ID: 1.10.520.20 Delta subunit of the f1f0-atp synthase. Chain: null. Fragment: n-termi VNG0319h cluster02 -> 1gxpA 10.032577 103 / 79 conP: 0.497 NO-CATH VNG0319h cluster03 -> 1seiA1 7.3487334 72 / 79 conP: 0.375 CATH-ID: 3.30.70.350 Ribosomal protein s8. Chain: a, b. Engineered: yes VNG0319h cluster04 -> 6mhtA1 7.2453751 229 / 79 conP: 0.126 CATH-ID: 3.40.50.150 Cytosine-specific methyltransferase hhai. Chain: a. Engineered: yes. B --end-- VNG03200 one-of-top-five-correct: 0.320150591251295 CThresh: 6.956687 30 best_is: cluster00 VNG03200 cluster00 -> 1j6vA 7.7954149 146 / 114 conP: 0.279 NO-CATH VNG03200 cluster01 -> 1iqrA 5.9157371 415 / 114 conP: 0.041 NO-CATH VNG03200 cluster02 -> 1diqC0 6.1948600 74 / 114 conP: 0.275 CATH-ID: 1.10.1250.10 P-cresol methylhydroxylase. Chain: a, b. Fragment: flavoprotein subuni VNG03200 cluster03 -> 14psA0 4.9740228 226 / 114 conP: 0.095 CATH-ID: 1.20.190.20 14-3-3 protein zeta/delta. Chain: a, b. Engineered: yes. Biological_un VNG03200 cluster04 -> 1hryA0 7.2509063 73 / 114 conP: 0.341 CATH-ID: 1.10.30.10 Human sry. Chain: a. DNA. Chain: b. Engineered: yes --end-- VNG03211 one-of-top-five-correct: 0.352723206963207 CThresh: 3.023152 75 best_is: cluster13 VNG03211 cluster00 -> 1a1w00 7.2242911 83 / 69 conP: 0.383 CATH-ID: 1.10.533.10 Fadd protein. Chain: null. Fragment: death effector domain. Synonym: f VNG03211 cluster01 -> 3ygsP0 7.1066059 97 / 69 conP: 0.342 CATH-ID: 1.10.533.10 Apoptotic protease activating factor 1. Chain: c. Fragment: caspase re VNG03211 cluster02 -> 1cipA2 5.9550050 119 / 69 conP: 0.230 CATH-ID: 1.10.400.10 Guanine nucleotide-binding protein alpha-1 subunit. Chain: a. Synonym: VNG03211 cluster03 -> 1lmb30 6.5738063 87 / 69 conP: 0.331 CATH-ID: 1.10.260.10 Lambda repressor/operator complex VNG03211 cluster04 -> 1b7yB4 6.3100448 74 / 69 conP: 0.343 CATH-ID: 3.30.56.20 Phenylalanyl-tRNA synthetase. Chain: a. Synonym: phers. Phenylalanyl-t VNG03211 cluster13 -> 1c9bA2 7.4358388 106 / 69 conP: 0.343 CATH-ID: 1.10.472.10 General transcription factor iib. Chain: a, e, i, m, q. Fragment: c-te --end-- VNG0323h one-of-top-five-correct: 0.34814028571255 CThresh: 3.331777 75 best_is: cluster13 VNG0323h cluster00 -> 1jy8A 7.3458234 155 / 57 conP: 0.160 NO-CATH VNG0323h cluster01 -> 1fcfA 7.3458234 387 / 57 conP: 0.011 NO-CATH VNG0323h cluster02 -> 1jy8A 7.5698775 155 / 57 conP: 0.169 NO-CATH VNG0323h cluster03 -> 1yagA3 5.7774449 108 / 57 conP: 0.178 CATH-ID: 3.30.420.70 Actin. Chain: a. Gelsolin. Chain: g. Fragment: subdomain 1. Synonym: a VNG0323h cluster04 -> 1aoa01 5.7774449 118 / 57 conP: 0.161 CATH-ID: 1.10.418.10 T-fimbrin. Chain: null. Fragment: abd1 VNG0323h cluster13 -> 1cy5A0 7.7939316 92 / 57 conP: 0.320 CATH-ID: 1.10.533.10 Apoptotic protease activating factor 1. Chain: a. Fragment: caspase re --end-- VNG0331h one-of-top-five-correct: 0.459141317447824 CThresh: 8.390144 25 best_is: cluster11 VNG0331h cluster00 -> 1aj600 5.7624244 194 / 128 conP: 0.127 CATH-ID: 3.30.565.10 Gyrase. Chain: null. Fragment: n-terminal 24 kda. Engineered: yes. Mut VNG0331h cluster01 -> 1jkw01 6.9810603 176 / 128 conP: 0.186 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y VNG0331h cluster02 -> 1qgxA1 6.0929673 219 / 128 conP: 0.122 CATH-ID: 3.30.540.10 3',5'-adenosine bisphosphatase. Chain: a. Synonym: pap phosphatase. En VNG0331h cluster03 -> 1toaA1 6.0593923 143 / 128 conP: 0.173 CATH-ID: 3.40.50.2010 Periplasmic binding protein troa. Chain: a, b. Fragment: soluble fract VNG0331h cluster04 -> 1bhmA0 6.6956881 198 / 128 conP: 0.157 CATH-ID: 3.40.91.20 Endonuclease bamhi. Chain: a, b. Synonym: r. Bamhi. Engineered: yes. D VNG0331h cluster11 -> 1ash00 9.7399070 147 / 128 conP: 0.372 CATH-ID: 1.10.490.10 Hemoglobin (domain one) --end-- VNG03372 one-of-top-five-correct: 0.477138980019428 CThresh: 2.225098 100 best_is: cluster04 VNG03372 cluster00 -> 1ash00 8.1711498 147 / 64 conP: 0.305 CATH-ID: 1.10.490.10 Hemoglobin (domain one) VNG03372 cluster01 -> 1ihp02 6.5793224 137 / 64 conP: 0.236 CATH-ID: 1.10.910.10 Phytase. Chain: null. Synonym: myo-inositol-hexakisphosphate-3-phospho VNG03372 cluster02 -> 1dceA1 7.8777034 317 / 64 conP: 0.059 CATH-ID: 1.25.40.120 Rab geranylgeranyltransferase alpha subunit. Chain: a, c. Rab geranylg VNG03372 cluster03 -> 1qqiA0 8.1711498 104 / 64 conP: 0.413 CATH-ID: 1.10.10.10 Phosphate regulon transcriptional regulatory protein phob. Chain: a. F VNG03372 cluster04 -> 1qqiA0 8.5992039 104 / 64 conP: 0.443 CATH-ID: 1.10.10.10 Phosphate regulon transcriptional regulatory protein phob. Chain: a. F --end-- VNG0343h one-of-top-five-correct: 0.262591298407972 CThresh: 6.863499 75 best_is: cluster04 VNG0343h cluster00 -> 1uroA0 5.0423650 357 / 93 conP: 0.025 CATH-ID: 3.20.20.210 Uroporphyrinogen decarboxylase. Chain: a. Synonym: uro-d, urod. Engine VNG0343h cluster01 -> 1dn1A3 6.3441181 120 / 93 conP: 0.183 CATH-ID: 1.25.40.60 Syntaxin binding protein 1. Chain: a. Synonym: nsec1. Engineered: yes. VNG0343h cluster02 -> 1ft1A0 6.2018678 315 / 93 conP: 0.047 CATH-ID: 1.25.40.120 Protein farnesyltransferase. Chain: a, b. Engineered: yes VNG0343h cluster03 -> 1ounA0 5.3996615 125 / 93 conP: 0.141 CATH-ID: 3.10.30.90 Nuclear transport factor 2. Chain: a, b. Synonym: pp15, b2. Engineered VNG0343h cluster04 -> 1k40A 7.4662826 126 / 93 conP: 0.228 NO-CATH --end-- VNG03451 one-of-top-five-correct: 0.288066412660368 CThresh: 5.615289 75 best_is: cluster16 VNG03451 cluster00 -> 1ew6A0 5.4307910 137 / 72 conP: 0.114 CATH-ID: 1.10.490.10 Dehaloperoxidase. Chain: a, b VNG03451 cluster01 -> 1mbe00 6.0173181 52 / 72 conP: 0.259 CATH-ID: 1.10.10.60 Myb proto-oncogene protein. Domain: DNA-binding domain repeat 1. Other VNG03451 cluster02 -> 1sfe02 5.4720526 84 / 72 conP: 0.179 CATH-ID: 1.10.10.10 Ada o6-methylguanine-DNA methyltransferase. Chain: null. Fragment: c-t VNG03451 cluster03 -> 1ho1C0 4.7152587 242 / 72 conP: 0.036 CATH-ID: 3.20.20.320 Pyridoxine 5'-phosphate synthase. Chain: a, b, c, d. Synonym: pyridoxa VNG03451 cluster04 -> 1a79A 7.3104139 171 / 72 conP: 0.137 NO-CATH VNG03451 cluster16 -> 1dn1A3 7.7281079 120 / 72 conP: 0.228 CATH-ID: 1.25.40.60 Syntaxin binding protein 1. Chain: a. Synonym: nsec1. Engineered: yes. --end-- VNG03452 one-of-top-five-correct: 0.635255886538866 CThresh: 5.414268 75 best_is: cluster05 VNG03452 cluster00 -> 1gab00 7.3320112 53 / 146 conP: 0.532 CATH-ID: 1.10.8.40 Protein pab. Chain: null. Fragment: albumin-binding domain, residues 2 VNG03452 cluster01 -> 1idy00 6.1390610 54 / 146 conP: 0.445 CATH-ID: 1.10.10.60 MousE C-myb DNA-binding domain repeat 3. Chain: null. Engineered: yes. VNG03452 cluster02 -> 1gxpA 6.2122336 103 / 146 conP: 0.393 NO-CATH VNG03452 cluster03 -> 1bw6A0 6.0463047 56 / 146 conP: 0.436 CATH-ID: 1.10.10.60 Centromere protein b. Chain: a. Fragment: DNA-binding domain. Engineer VNG03452 cluster04 -> 1volA1 7.4698335 97 / 146 conP: 0.489 CATH-ID: 1.10.472.10 Transcription factor iib. Chain: a. Fragment: residues 113 - 316. Engi VNG03452 cluster05 -> 1jhgA0 9.9477480 101 / 146 conP: 0.657 CATH-ID: 1.10.1270.10 Trp operon repressor. Chain: a. Engineered: yes. Mutation: chain a, v5 --end-- VNG0346h one-of-top-five-correct: 0.263566475935494 CThresh: 3.078012 75 best_is: cluster16 VNG0346h cluster00 -> 1aisB2 4.3940020 94 / 52 conP: 0.137 CATH-ID: 1.10.472.10 Tata-binding protein. Chain: a. Fragment: residues 1 - 181. Synonym: t VNG0346h cluster01 -> 1bhdA0 5.0848658 108 / 52 conP: 0.138 CATH-ID: 1.10.418.10 Utrophin. Chain: a, b. Fragment: 2nd calponin homology domain from act VNG0346h cluster02 -> 1d2tA 5.5454416 222 / 52 conP: 0.038 NO-CATH VNG0346h cluster03 -> 3ygsP0 6.6968813 97 / 52 conP: 0.228 CATH-ID: 1.10.533.10 Apoptotic protease activating factor 1. Chain: c. Fragment: caspase re VNG0346h cluster04 -> 1e5rA 5.3151537 260 / 52 conP: 0.022 NO-CATH VNG0346h cluster16 -> 1dgnA0 6.6968813 89 / 52 conP: 0.247 CATH-ID: 1.10.533.10 Iceberg (protease inhibitor). Chain: a. Fragment: residues 2-90. Engin --end-- VNG03491 one-of-top-five-correct: 0.171298966823516 CThresh: 7.024285 25 best_is: cluster05 VNG03491 cluster00 -> 3bcl00 4.8711051 344 / 86 conP: 0.020 CATH-ID: 2.50.10.10 Bacteriochlorophyll-a protein VNG03491 cluster01 -> 1d2mA3 5.6159093 177 / 86 conP: 0.089 CATH-ID: 3.40.50.300 Excinuclease abc subunit b. Chain: a. Synonym: uvrb. Engineered: yes VNG03491 cluster02 -> 1eso00 4.0326853 140 / 86 conP: 0.077 CATH-ID: 2.60.40.200 Cu, zn superoxide dismutase. Chain: null. Synonym: sod. Engineered: ye VNG03491 cluster03 -> 1gof02 4.5542201 388 / 86 conP: 0.013 CATH-ID: 2.130.20.10 Galactose oxidase (ph 4.5) VNG03491 cluster04 -> 1chmA1 4.1616246 155 / 86 conP: 0.071 CATH-ID: 3.40.350.10 Creatine amidinohydrolase VNG03491 cluster05 -> 1kit03 6.2096183 187 / 86 conP: 0.096 CATH-ID: 2.60.120.200 Sialidase. Chain: null. Synonym: neuraminidase. Engineered: yes --end-- VNG03492 one-of-top-five-correct: 0.311406804363264 CThresh: 2.829952 100 best_is: cluster09 VNG03492 cluster00 -> 1sacA0 5.4064474 204 / 50 conP: 0.043 CATH-ID: 2.60.120.60 Serum amyloid p component (sap) VNG03492 cluster01 -> 1av401 5.6394429 87 / 50 conP: 0.199 CATH-ID: 3.10.30.70 Amine oxidase. Chain: null. Synonym: agao. Biological_unit: dimer VNG03492 cluster02 -> 1ge8A0 5.6394429 238 / 50 conP: 0.029 CATH-ID: 3.70.10.10 Proliferation cell nuclear antigen. Chain: a. Engineered: yes. Mutatio VNG03492 cluster03 -> 1av401 5.8724385 87 / 50 conP: 0.209 CATH-ID: 3.10.30.70 Amine oxidase. Chain: null. Synonym: agao. Biological_unit: dimer VNG03492 cluster04 -> 1htp00 5.8724385 131 / 50 conP: 0.125 CATH-ID: 2.40.50.100 H-protein complexed with lipoic acid charged in methylamine VNG03492 cluster09 -> 1dkxA1 7.2704119 135 / 50 conP: 0.168 CATH-ID: 2.60.34.10 Substrate binding domain of dnak. Chain: a. Biological_unit: dimer. Su --end-- VNG0352h one-of-top-five-correct: 0.496146651403203 CThresh: 4.148354 75 best_is: cluster03 VNG0352h cluster00 -> 1qnrA0 8.1479500 344 / 71 conP: 0.047 CATH-ID: 3.20.20.80 Endo-1,4-b-d-mannanase. Chain: a. Fragment: catalytic domain. Engineer VNG0352h cluster01 -> 1qnrA0 9.2390423 344 / 71 conP: 0.064 CATH-ID: 3.20.20.80 Endo-1,4-b-d-mannanase. Chain: a. Fragment: catalytic domain. Engineer VNG0352h cluster02 -> 1gkxA 7.7709245 308 / 71 conP: 0.060 NO-CATH VNG0352h cluster03 -> 1dar04 9.5203403 119 / 71 conP: 0.405 CATH-ID: 3.30.230.10 Elongation factor g. Chain: null. Synonym: ef-g VNG0352h cluster04 -> 1qd1B1 5.2541512 180 / 71 conP: 0.098 CATH-ID: 3.30.990.10 Formiminotransferase-cyclodeaminase. Chain: a, b. Fragment: formiminot --end-- VNG03540 one-of-top-five-correct: 0.347350200593713 CThresh: 8.520777 25 best_is: cluster16 VNG03540 cluster00 -> 1qspA0 6.2546592 165 / 121 conP: 0.147 CATH-ID: 1.20.120.160 Ypd1. Chain: a, b. Engineered: yes. Biological_unit: monomer VNG03540 cluster01 -> 1zymA2 6.1393254 126 / 121 conP: 0.173 CATH-ID: 1.10.274.10 Enzyme i. Chain: a, b. Fragment: amino-terminal domain residues 1 - 25 VNG03540 cluster02 -> 1ktpA 6.4918898 162 / 121 conP: 0.158 NO-CATH VNG03540 cluster03 -> 1i1dA0 6.3609402 156 / 121 conP: 0.158 CATH-ID: 3.40.630.30 Glucosamine-phosphate n-acetyltransferase. Chain: a, b, c, d. Synonym: VNG03540 cluster04 -> 1ea1A0 6.0802907 447 / 121 conP: 0.031 CATH-ID: 1.10.630.10 Cytochrome p450 51-like rv0764c. Chain: a. Synonym: cyp51, 14alpha-ste VNG03540 cluster16 -> 1grj01 8.6803559 74 / 121 conP: 0.370 CATH-ID: 1.20.15.150 Grea transcript cleavage factor from escherichia coli --end-- VNG03541 one-of-top-five-correct: 0.727877788530159 CThresh: 3.974595 75 best_is: cluster04 VNG03541 cluster00 -> 1jgjA0 9.2643326 217 / 99 conP: 0.356 CATH-ID: 1.20.85.10 Sensory rhodopsin ii. Chain: a. Engineered: yes VNG03541 cluster01 -> 1e7aA5 9.6353134 112 / 99 conP: 0.564 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG03541 cluster02 -> 1e7aA1 8.7971275 103 / 99 conP: 0.520 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG03541 cluster03 -> 1jgjA0 7.9370929 217 / 99 conP: 0.274 CATH-ID: 1.20.85.10 Sensory rhodopsin ii. Chain: a. Engineered: yes VNG03541 cluster04 -> 1jgjA0 11.539601 217 / 99 conP: 0.516 CATH-ID: 1.20.85.10 Sensory rhodopsin ii. Chain: a. Engineered: yes --end-- VNG03610 one-of-top-five-correct: 0.193196292643004 CThresh: 3.000624 84 best_is: cluster04 VNG03610 cluster00 -> 1af800 3.3300449 86 / 43 conP: 0.089 CATH-ID: 1.10.1200.10 Actinorhodin polyketide synthase acyl carrier protein. Chain: null. Sy VNG03610 cluster01 -> 1fknA2 3.0863893 239 / 43 conP: 0.007 CATH-ID: 2.40.70.10 Memapsin 2. Chain: a, b. Fragment: protease domain. Synonym: beta-secr VNG03610 cluster02 -> 1akhB0 5.0356344 78 / 43 conP: 0.154 CATH-ID: 1.10.10.60 Mating-type protein a-1. Chain: a. Engineered: yes. Mating-type protei VNG03610 cluster04 -> 1bor00 5.7666012 56 / 43 conP: 0.243 CATH-ID: 3.30.40.10 Transcription factor pml. Chain: null. Fragment: ring finger domain, r VNG03610 cluster05 -> 1lml02 3.5737006 124 / 43 conP: 0.053 CATH-ID: 3.90.132.10 Leishmanolysin. Chain: null. Synonym: gp63 protein, psp. Ec: 3.4.24.36 --end-- VNG03611 one-of-top-five-correct: 0.177357803800663 CThresh: 6.770172 75 best_is: cluster11 VNG03611 cluster00 -> 1prcC2 5.7320065 156 / 86 conP: 0.112 CATH-ID: 1.10.468.10 Photosynthetic reaction center VNG03611 cluster01 -> 1phb00 4.6263943 405 / 86 conP: 0.012 CATH-ID: 1.10.630.10 Cytochrome p450-cam (camphor 5-monoxygenase) complex with camphor (min VNG03611 cluster02 -> 1mml02 5.8138123 146 / 86 conP: 0.123 CATH-ID: 3.30.70.270 Mmlv reverse transcriptase. Chain: null. Engineered: yes VNG03611 cluster03 -> 1bwzA2 5.0222003 137 / 86 conP: 0.108 CATH-ID: 3.10.310.10 Diaminopimelate epimerase. Chain: a. Synonym: dap epimerase. Engineere VNG03611 cluster04 -> 1e15A 5.2930204 496 / 86 conP: 0.007 NO-CATH VNG03611 cluster11 -> 1qd1B1 6.2096183 180 / 86 conP: 0.107 CATH-ID: 3.30.990.10 Formiminotransferase-cyclodeaminase. Chain: a, b. Fragment: formiminot --end-- VNG0367h one-of-top-five-correct: 0.281497084201011 CThresh: 6.971778 26 best_is: cluster10 VNG0367h cluster00 -> 1dq3A3 5.5879949 87 / 113 conP: 0.225 CATH-ID: 3.10.28.10 Endonuclease. Chain: a. Engineered: yes VNG0367h cluster01 -> 1vig00 5.8833445 71 / 113 conP: 0.259 CATH-ID: 3.30.70.210 Vigilin. Chain: null. Fragment: kh6, residues 432 to 501. Engineered: VNG0367h cluster02 -> 2tct01 5.5334654 65 / 113 conP: 0.246 CATH-ID: 1.10.10.60 Tetracycline repressor. Chain: null. Synonym: tet repressor, class d. VNG0367h cluster03 -> 1pfkA2 6.3893146 126 / 113 conP: 0.223 CATH-ID: 3.40.50.460 Phosphofructokinase (r-state) complex with fructose-1,6-bisphosphate a VNG0367h cluster04 -> 1vig00 6.0930756 71 / 113 conP: 0.270 CATH-ID: 3.30.70.210 Vigilin. Chain: null. Fragment: kh6, residues 432 to 501. Engineered: VNG0367h cluster10 -> 1ospO2 7.3214059 76 / 113 conP: 0.338 CATH-ID: 2.20.50.10 Fab 184.1. Chain: l, h. Outer surface protein a. Chain: o. Synonym: os --end-- VNG0370h one-of-top-five-correct: 0.669035991017769 CThresh: 6.919359 75 best_is: cluster11 VNG0370h cluster00 -> 1mba00 7.1786702 146 / 99 conP: 0.205 CATH-ID: 1.10.490.10 Myoglobin (met) ( p H 7.0) VNG0370h cluster01 -> 1zymA2 6.6098532 126 / 99 conP: 0.201 CATH-ID: 1.10.274.10 Enzyme i. Chain: a, b. Fragment: amino-terminal domain residues 1 - 25 VNG0370h cluster02 -> 1ljwA 4.9034022 141 / 99 conP: 0.122 NO-CATH VNG0370h cluster03 -> 1jud02 6.8456211 75 / 99 conP: 0.279 CATH-ID: 1.10.164.10 L-2-haloacid dehalogenase. Chain: null. Engineered: yes VNG0370h cluster04 -> 1dciA2 5.7523041 63 / 99 conP: 0.235 CATH-ID: 1.10.12.10 Dienoyl-coa isomerase. Chain: a, b, c. Synonym: delta3,5,delta2,4-dien VNG0370h cluster11 -> 1mba00 12.108418 146 / 99 conP: 0.516 CATH-ID: 1.10.490.10 Myoglobin (met) ( p H 7.0) --end-- VNG03710 one-of-top-five-correct: 0.314249739859508 CThresh: 4.582833 75 best_is: cluster13 VNG03710 cluster00 -> 1p35A 5.1419246 299 / 68 conP: 0.025 NO-CATH VNG03710 cluster01 -> 1e96B0 5.7793682 185 / 68 conP: 0.090 CATH-ID: 1.25.40.10 Ras-related c3 botulinum toxin substrate 1. Chain: a. Synonym: rac1. E VNG03710 cluster02 -> 1g4wR0 5.7793682 341 / 68 conP: 0.019 CATH-ID: 3.90.190.10 Protein tyrosine phosphatase sptp. Chain: r. Fragment: sptp residues 1 VNG03710 cluster03 -> 1hxiA0 6.2043306 108 / 68 conP: 0.198 CATH-ID: 1.25.40.10 Peroxisome targeting signal 1 receptor pex5. Chain: a. Fragment: first VNG03710 cluster04 -> 1fapB0 6.1937977 95 / 68 conP: 0.219 CATH-ID: 1.20.120.150 Fk506-binding protein. Chain: a. Synonym: fkbp12. Engineered: yes. Fra VNG03710 cluster13 -> 1ahjB1 7.6916990 110 / 68 conP: 0.271 --end-- VNG0373h one-of-top-five-correct: 0.487720172981703 CThresh: 6.992503 42 best_is: cluster04 VNG0373h cluster00 -> 1qqtA3 5.4369021 138 / 121 conP: 0.184 CATH-ID: 1.10.730.10 Methionyl-tRNA synthetase. Chain: a. Fragment: truncated fragment, res VNG0373h cluster01 -> 1aj300 8.5445721 98 / 121 conP: 0.410 CATH-ID: 1.20.1040.10 Alpha spectrin. Chain: null. Fragment: 16th repeat, residues 1772 - 18 VNG0373h cluster02 -> 1fftC0 6.9556703 185 / 121 conP: 0.210 CATH-ID: 1.20.120.80 Ubiquinol oxidase. Chain: a, f. Engineered: yes. Ubiquinol oxidase. Ch VNG0373h cluster03 -> 2fha00 7.8319341 172 / 121 conP: 0.269 CATH-ID: 1.20.120.190 Ferritin. Chain: null. Engineered: yes. Mutation: k86q. Biological_uni VNG0373h cluster04 -> 1hx1B0 9.5793734 112 / 121 conP: 0.463 CATH-ID: 1.20.1040.80 Heat shock cognate 71 kda. Chain: a. Fragment: atpase domain. Synonym: --end-- VNG03740 one-of-top-five-correct: 0.530654912126161 CThresh: 3.394679 75 best_is: cluster04 VNG03740 cluster00 -> 1ap800 7.0682813 213 / 84 conP: 0.192 CATH-ID: 3.30.760.10 Translation initiation factor eif4e. Chain: null. Engineered: yes VNG03740 cluster01 -> 1ap800 6.0716718 213 / 84 conP: 0.151 CATH-ID: 3.30.760.10 Translation initiation factor eif4e. Chain: null. Engineered: yes VNG03740 cluster02 -> 1tdj03 6.9739864 161 / 84 conP: 0.263 CATH-ID: 3.40.1020.10 Biosynthetic threonine deaminase. Chain: null. Synonym: threonine dehy VNG03740 cluster03 -> 1a1601 7.7646507 172 / 84 conP: 0.290 CATH-ID: 3.40.350.10 Aminopeptidase p. Chain: null. Synonym: ampp. Biological_unit: homotet VNG03740 cluster04 -> 1qm9A1 9.2608220 98 / 84 conP: 0.538 CATH-ID: 3.30.70.330 Polypyrimidine tract-binding protein. Chain: a. Fragment: RNA binding --end-- VNG03741 one-of-top-five-correct: 0.333233764956755 CThresh: 2.639410 100 best_is: cluster15 VNG03741 cluster00 -> 1qu6A2 5.3532424 76 / 59 conP: 0.258 CATH-ID: 3.30.160.20 Protein kinase pkr. Chain: a. Fragment: dsrna-binding n-terminal domai VNG03741 cluster01 -> 1qftA0 6.2296896 175 / 59 conP: 0.121 CATH-ID: 2.40.128.20 Female-specific histamine binding protein 2. Chain: a. Engineered: yes VNG03741 cluster02 -> 1aorA2 5.4713351 186 / 59 conP: 0.089 CATH-ID: 1.10.569.10 Aldehyde ferredoxin oxidoreductase protein complexed with molybdopteri VNG03741 cluster03 -> 1asu00 5.6930852 162 / 59 conP: 0.121 CATH-ID: 3.30.420.10 Avian sarcoma virus integrase. Chain: null. Domain: catalytic core dom VNG03741 cluster04 -> 1bcpF0 5.9148353 98 / 59 conP: 0.239 CATH-ID: 2.40.50.110 Pertussis toxin. Chain: a, b, c, d, e, f, g, h, i, j, k, l. Ec: 2.4.2. VNG03741 cluster15 -> 1ospO1 7.2526993 73 / 59 conP: 0.384 CATH-ID: 2.30.70.11 Fab 184.1. Chain: l, h. Outer surface protein a. Chain: o. Synonym: os --end-- VNG03800 one-of-top-five-correct: 0.599014157949112 CThresh: 7.372280 25 best_is: cluster03 VNG03800 cluster00 -> 1gai00 7.6351241 472 / 138 conP: 0.081 CATH-ID: 1.50.10.30 Glucoamylase-471. Chain: null. Fragment: residues 1-471. Synonym: gluc VNG03800 cluster01 -> 2a3dA0 9.9738140 73 / 138 conP: 0.568 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes VNG03800 cluster02 -> 1ec5A0 7.1534013 48 / 138 conP: 0.399 CATH-ID: 1.20.15.30 Four-helix bundle model. Chain: a, b, c. Engineered: yes. Other_detail VNG03800 cluster03 -> 2a3dA0 10.597749 73 / 138 conP: 0.612 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes VNG03800 cluster04 -> 1dg3A1 9.1767509 300 / 138 conP: 0.249 CATH-ID: 1.20.1000.10 Interferon-induced guanylate-binding protein 1. Chain: a. Fragment: fu --end-- VNG03820 one-of-top-five-correct: 0.668993304151383 CThresh: 2.813879 100 best_is: cluster16 VNG03820 cluster00 -> 1e8cA 8.7214087 482 / 72 conP: 0.021 NO-CATH VNG03820 cluster01 -> 2dri01 8.5634959 125 / 72 conP: 0.402 CATH-ID: 3.40.50.2900 D-ribose-binding protein complexed with beta-d-ribose VNG03820 cluster02 -> 2scuB3 8.3546489 146 / 72 conP: 0.341 CATH-ID: 3.40.50.261 Succinyl-coa ligase. Chain: a, d. Synonym: scs. Engineered: yes. Biolo VNG03820 cluster03 -> 1dbqA1 9.6077308 134 / 72 conP: 0.455 CATH-ID: 3.40.50.2200 Purine repressor. Chain: a, b. Fragment: corepressor-free corepressor- VNG03820 cluster04 -> 2scuB3 8.5634959 146 / 72 conP: 0.354 CATH-ID: 3.40.50.261 Succinyl-coa ligase. Chain: a, d. Synonym: scs. Engineered: yes. Biolo VNG03820 cluster16 -> 1pea02 10.860813 176 / 72 conP: 0.443 CATH-ID: 3.40.50.3800 Amidase operon. Chain: null. Fragment: amide receptor/negative regulat --end-- VNG0383h one-of-top-five-correct: 0.287404141706775 CThresh: 8.470076 25 best_is: cluster16 VNG0383h cluster00 -> 1b4fA0 5.9961719 74 / 121 conP: 0.215 CATH-ID: 1.10.150.50 Ephb2. Chain: a, b, c, d, e, f, g, h. Fragment: sam domain. Engineered VNG0383h cluster01 -> 1b4fA0 5.0908901 74 / 121 conP: 0.174 CATH-ID: 1.10.150.50 Ephb2. Chain: a, b, c, d, e, f, g, h. Fragment: sam domain. Engineered VNG0383h cluster02 -> 1bpb01 6.0517180 58 / 121 conP: 0.234 CATH-ID: 1.10.150.20 DNA polymerase beta (beta polymerase) (apo, 31kd domain) VNG0383h cluster03 -> 1doqA0 6.7795450 69 / 121 conP: 0.261 CATH-ID: 1.10.359.10 RNA polymerase alpha subunit. Chain: a. Fragment: c-terminal domain. E VNG0383h cluster04 -> 1doqA0 6.7070805 69 / 121 conP: 0.257 CATH-ID: 1.10.359.10 RNA polymerase alpha subunit. Chain: a. Fragment: c-terminal domain. E VNG0383h cluster16 -> 1doqA0 7.8981877 69 / 121 conP: 0.328 CATH-ID: 1.10.359.10 RNA polymerase alpha subunit. Chain: a. Fragment: c-terminal domain. E --end-- VNG0389c one-of-top-five-correct: 0.334719009913114 CThresh: 5.355040 75 best_is: cluster04 VNG0389c cluster00 -> 1bia01 6.5494957 64 / 95 conP: 0.343 CATH-ID: 1.10.10.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG0389c cluster01 -> 1e6uA1 5.3544371 220 / 95 conP: 0.105 CATH-ID: 3.40.50.720 Gdp-fucose synthetase. Chain: a. Synonym: gdp-4-keto 6-deoxy-mannose 3 VNG0389c cluster02 -> 1bia01 7.3960771 64 / 95 conP: 0.400 CATH-ID: 1.10.10.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG0389c cluster03 -> 1bia01 6.7611410 64 / 95 conP: 0.357 CATH-ID: 1.10.10.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG0389c cluster04 -> 1qqeA0 7.6828107 281 / 95 conP: 0.128 CATH-ID: 1.25.40.10 Vesicular transport protein sec17. Chain: a. Engineered: yes. Mutation --end-- VNG0396c one-of-top-five-correct: 0.237927580916474 CThresh: 8.640760 25 best_is: cluster08 VNG0396c cluster00 -> 4jdwA0 6.1970753 360 / 136 conP: 0.069 CATH-ID: 3.75.10.10 L-arginine\:glycine amidinotransferase. Chain: a. Fragment: residues 6 VNG0396c cluster01 -> 2pgd01 5.2968002 180 / 136 conP: 0.127 CATH-ID: 3.40.50.720 6-phosphogluconate dehydrogenase (6-pgdh) VNG0396c cluster02 -> 1d5kA0 4.6794425 89 / 136 conP: 0.162 CATH-ID: 3.30.70.60 Translation elongation factor 1beta. Chain: a. Engineered: yes VNG0396c cluster03 -> 1reqB1 6.2047690 437 / 136 conP: 0.048 CATH-ID: 3.20.20.240 Methylmalonyl-coa mutase. Chain: a, b, c, d. Engineered: yes. Other_de VNG0396c cluster04 -> 1ez0A2 5.4426978 185 / 136 conP: 0.129 CATH-ID: 3.40.309.10 Aldehyde dehydrogenase. Chain: a, b, c, d. Synonym: aldh. Engineered: VNG0396c cluster08 -> 1kh0A 6.9330855 65 / 136 conP: 0.296 NO-CATH --end-- VNG04010 one-of-top-five-correct: 0.591325158791487 CThresh: 3.458529 75 best_is: cluster15 VNG04010 cluster00 -> 1fbnA0 8.5722719 225 / 100 conP: 0.330 CATH-ID: 3.40.50.150 Mj fibrillarin homologue. Chain: a. Engineered: yes VNG04010 cluster01 -> 1b5tA0 8.3292037 275 / 100 conP: 0.244 CATH-ID: 3.20.20.220 Methylenetetrahydrofolate reductase. Chain: a, b, c. Engineered: yes VNG04010 cluster02 -> 1fvqA0 7.0296720 72 / 100 conP: 0.480 CATH-ID: 3.30.70.100 Copper-transporting atpase. Chain: a. Fragment: ccc2a domain. Engineer VNG04010 cluster03 -> 1qd1B1 8.1968527 180 / 100 conP: 0.377 CATH-ID: 3.30.990.10 Formiminotransferase-cyclodeaminase. Chain: a, b. Fragment: formiminot VNG04010 cluster04 -> 1nal10 7.1164023 291 / 100 conP: 0.169 CATH-ID: 3.20.20.70 N-acetylneuraminate lyase. Chain: 1, 2, 3, 4. Ec: 4.1.3.3 VNG04010 cluster15 -> 1f74A0 9.6007337 293 / 100 conP: 0.292 CATH-ID: 3.20.20.70 N-acetyl-neuraminate lyase. Chain: a, c. Synonym: nal. Engineered: yes --end-- VNG04011 one-of-top-five-correct: 0.306771625773258 CThresh: 3.023746 88 best_is: cluster17 VNG04011 cluster00 -> 2scuB2 5.9085977 84 / 71 conP: 0.304 CATH-ID: 2.30.35.30 Succinyl-coa ligase. Chain: a, d. Synonym: scs. Engineered: yes. Biolo VNG04011 cluster01 -> 1d1dA2 6.5032412 80 / 71 conP: 0.350 CATH-ID: 1.10.1200.30 Capsid protein. Chain: a. Engineered: yes. Mutation: yes VNG04011 cluster02 -> 1c3jA2 5.1593851 166 / 71 conP: 0.135 CATH-ID: 3.40.50.110 Beta-glucosyltransferase. Chain: a. Engineered: yes VNG04011 cluster03 -> 1il600 5.8833445 166 / 71 conP: 0.162 CATH-ID: 1.20.120.200 Interleukin-6. Chain: null VNG04011 cluster04 -> 1dik05 5.5747142 89 / 71 conP: 0.274 CATH-ID: 1.20.80.30 Pyruvate phosphate dikinase. Chain: null. Synonym: ppdk. Engineered: y VNG04011 cluster17 -> 1pdo00 6.8207014 129 / 71 conP: 0.267 CATH-ID: 3.40.50.510 Mannose permease. Chain: null. Fragment: iia ==man== domain, residues --end-- VNG04013 one-of-top-five-correct: 0.585483870883316 CThresh: 2.871604 100 best_is: cluster19 VNG04013 cluster00 -> 1egzA0 9.1282202 291 / 69 conP: 0.119 CATH-ID: 3.20.20.80 Endoglucanase z. Chain: a, b, c. Fragment: catalytic domain. Synonym: VNG04013 cluster01 -> 1egzA0 7.6473864 291 / 69 conP: 0.081 CATH-ID: 3.20.20.80 Endoglucanase z. Chain: a, b, c. Fragment: catalytic domain. Synonym: VNG04013 cluster02 -> 1c4xA0 7.0127434 281 / 69 conP: 0.075 CATH-ID: 3.40.50.950 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Chain: a. Synonym VNG04013 cluster03 -> 1qhwA0 7.0127434 300 / 69 conP: 0.063 CATH-ID: 3.60.21.10 Purple acid phosphatase. Chain: a. Synonym: tartrate-resistant acid ph VNG04013 cluster04 -> 1aw500 8.9166725 321 / 69 conP: 0.086 CATH-ID: 3.20.20.230 5-aminolevulinate dehydratase. Chain: null. Synonym: porphobilinogen s VNG04013 cluster19 -> 1egzA0 9.9744109 291 / 69 conP: 0.147 CATH-ID: 3.20.20.80 Endoglucanase z. Chain: a, b, c. Fragment: catalytic domain. Synonym: --end-- VNG0402h one-of-top-five-correct: 0.215939489012287 CThresh: 3.997741 75 best_is: cluster14 VNG0402h cluster00 -> 1qc7A0 5.6882556 101 / 49 conP: 0.133 CATH-ID: 1.10.220.30 Flig. Chain: a, b. Fragment: flig-c. Engineered: yes VNG0402h cluster01 -> 1cjsA2 4.8479248 91 / 49 conP: 0.122 CATH-ID: 3.40.50.790 50s ribosomal protein l1p. Chain: a. Engineered: yes VNG0402h cluster02 -> 1bpoA2 5.2194542 155 / 49 conP: 0.058 CATH-ID: 1.25.40.30 Clathrin. Chain: a, b, c. Fragment: terminal domain and linker. Engine VNG0402h cluster03 -> 1dh0A1 4.0474508 270 / 49 conP: 0.008 CATH-ID: 3.90.77.20 Adenosine kinase. Chain: a. Engineered: yes VNG0402h cluster04 -> 1idy00 4.2818515 54 / 49 conP: 0.166 CATH-ID: 1.10.10.60 MousE C-myb DNA-binding domain repeat 3. Chain: null. Engineered: yes. VNG0402h cluster14 -> 1cjsA2 6.4651275 91 / 49 conP: 0.181 CATH-ID: 3.40.50.790 50s ribosomal protein l1p. Chain: a. Engineered: yes --end-- VNG04071 one-of-top-five-correct: 0.321378385792308 CThresh: 6.151548 75 best_is: cluster09 VNG04071 cluster00 -> 1mun02 6.4963391 112 / 96 conP: 0.234 CATH-ID: 1.10.340.10 Adenine glycosylase. Chain: null. Fragment: catalytic domain. Engineer VNG04071 cluster01 -> 1ezfA 5.1450293 323 / 96 conP: 0.043 NO-CATH VNG04071 cluster02 -> 1jncA 6.1580850 123 / 96 conP: 0.204 NO-CATH VNG04071 cluster03 -> 1bip00 7.7659888 122 / 96 conP: 0.291 CATH-ID: 1.10.120.10 Bifunctional trypsin/alpha-amylase inhibitor (rbi) (nmr, 20 structures VNG04071 cluster04 -> 1be3H0 6.1465287 64 / 96 conP: 0.282 CATH-ID: 1.10.287.20 Cytochrome bc1 complex. Chain: a, b, c, d, e, f, g, h, i, j, k. Synony VNG04071 cluster09 -> 1bq7A0 7.8555702 186 / 96 conP: 0.209 CATH-ID: 3.40.30.10 Disulfide oxidoreductase. Chain: a, b, c, d, e, f. Synonym: dsba. Engi --end-- VNG04080 one-of-top-five-correct: 0.41156131113596 CThresh: 5.966735 75 best_is: cluster03 VNG04080 cluster00 -> 1elwA0 8.0922094 117 / 104 conP: 0.355 CATH-ID: 1.25.40.10 Tpr1-domain of hop. Chain: a, b. Fragment: n-terminal domain. Engineer VNG04080 cluster01 -> 1qsaA2 6.9719998 70 / 104 conP: 0.353 CATH-ID: 1.10.1240.20 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein VNG04080 cluster02 -> 1a1700 7.5974454 159 / 104 conP: 0.264 CATH-ID: 1.25.40.10 Serine/threonine protein phosphatase 5. Chain: null. Fragment: protein VNG04080 cluster03 -> 1qsaA2 8.6570492 70 / 104 conP: 0.470 CATH-ID: 1.10.1240.20 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein VNG04080 cluster04 -> 1hxiA0 7.8080656 108 / 104 conP: 0.350 CATH-ID: 1.25.40.10 Peroxisome targeting signal 1 receptor pex5. Chain: a. Fragment: first --end-- VNG04101 one-of-top-five-correct: 0.61884189188591 CThresh: 2.891650 100 best_is: cluster11 VNG04101 cluster00 -> 1cei00 6.5507375 85 / 70 conP: 0.345 CATH-ID: 1.10.1200.20 Colicin e7 immunity protein. Chain: null. Synonym: imme7 VNG04101 cluster01 -> 1mmd06 5.2764638 66 / 70 conP: 0.306 CATH-ID: 3.30.70.320 Myosin. Chain: null. Fragment: motor domain. Engineered: yes. Mutation VNG04101 cluster02 -> 1i6kA 6.5507375 316 / 70 conP: 0.050 NO-CATH VNG04101 cluster03 -> 1pah00 6.5507375 308 / 70 conP: 0.054 CATH-ID: 1.10.800.10 Phenylalanine hydroxylase. Chain: null. Fragment: catalytic domain. En VNG04101 cluster04 -> 1a8vA1 6.1570570 49 / 70 conP: 0.402 CATH-ID: 1.10.720.10 Transcription termination factor rho. Chain: a, b. Fragment: RNA-bindi VNG04101 cluster11 -> 1cy5A0 10.342098 92 / 70 conP: 0.594 CATH-ID: 1.10.533.10 Apoptotic protease activating factor 1. Chain: a. Fragment: caspase re --end-- VNG04121 one-of-top-five-correct: 0.484258280240562 CThresh: 5.682806 75 best_is: cluster09 VNG04121 cluster00 -> 1adeA2 6.5091885 100 / 108 conP: 0.305 CATH-ID: 1.10.300.10 Adenylosuccinate synthetase. Chain: a, b. Domain: c-terminal. Ec: 6.3. VNG04121 cluster01 -> 1isfA 4.5998604 250 / 108 conP: 0.087 NO-CATH VNG04121 cluster02 -> 1pysB6 7.0410521 96 / 108 conP: 0.344 CATH-ID: 3.30.70.380 Phenylalanyl-tRNA synthetase. Chain: a, b. Biological_unit: tetramer o VNG04121 cluster03 -> 1adeA2 7.1294701 100 / 108 conP: 0.344 CATH-ID: 1.10.300.10 Adenylosuccinate synthetase. Chain: a, b. Domain: c-terminal. Ec: 6.3. VNG04121 cluster04 -> 1lxl00 5.8756572 221 / 108 conP: 0.143 CATH-ID: 1.10.437.10 Bcl-xl. Chain: null. Synonym: apoptosis regulator bcl-x. Engineered: y VNG04121 cluster09 -> 1babA0 9.2434888 142 / 108 conP: 0.424 CATH-ID: 1.10.490.10 Hemoglobin thionville alpha chain mutant with val 1 replaced by glu an --end-- VNG04140 one-of-top-five-correct: 0.228108971378141 CThresh: 6.386102 75 best_is: cluster20 VNG04140 cluster00 -> 1fjgT0 4.7812703 99 / 66 conP: 0.103 CATH-TRUNC VNG04140 cluster01 -> 1iizA 5.2153665 120 / 66 conP: 0.094 NO-CATH VNG04140 cluster02 -> 1a1700 5.2100733 159 / 66 conP: 0.064 CATH-ID: 1.25.40.10 Serine/threonine protein phosphatase 5. Chain: null. Fragment: protein VNG04140 cluster03 -> 1hbq00 7.2293493 176 / 66 conP: 0.093 CATH-ID: 2.40.128.20 Retinol binding protein (apo form) (apo brbp) VNG04140 cluster04 -> 1buoA0 4.7812703 121 / 66 conP: 0.083 CATH-ID: 3.30.710.10 Promyelocytic leukemia zinc finger protein plzf. Chain: a. Fragment: b VNG04140 cluster20 -> 1jlaA 7.3540880 546 / 66 conP: 0.002 NO-CATH --end-- VNG04142 one-of-top-five-correct: 0.437677266869378 CThresh: 3.787652 75 best_is: cluster11 VNG04142 cluster00 -> 1d2mA3 8.0324927 177 / 67 conP: 0.192 CATH-ID: 3.40.50.300 Excinuclease abc subunit b. Chain: a. Synonym: uvrb. Engineered: yes VNG04142 cluster01 -> 1bfd01 7.3988883 162 / 67 conP: 0.188 CATH-ID: 3.40.50.70 Benzoylformate decarboxylase. Chain: null. Engineered: yes. Biological VNG04142 cluster02 -> 1dioB0 6.5540825 179 / 67 conP: 0.132 CATH-ID: 3.40.990.10 Diol dehydratase. Chain: a, l. Engineered: yes. Diol dehydratase. Chai VNG04142 cluster03 -> 1fzrA 8.7363935 129 / 67 conP: 0.325 NO-CATH VNG04142 cluster04 -> 1d2mA3 7.1876869 177 / 67 conP: 0.157 CATH-ID: 3.40.50.300 Excinuclease abc subunit b. Chain: a. Synonym: uvrb. Engineered: yes VNG04142 cluster11 -> 1nsj00 8.8040188 205 / 67 conP: 0.181 CATH-ID: 3.20.20.90 Phosphoribosyl anthranilate isomerase. Chain: null. Synonym: prai. Eng --end-- VNG0420h one-of-top-five-correct: 0.379380523181536 CThresh: 4.489640 75 best_is: cluster07 VNG0420h cluster00 -> 1c3rA0 8.0272833 372 / 61 conP: 0.017 CATH-ID: 3.40.800.20 Hdlp (histone deacetylase-like protein). Chain: a, b. Engineered: yes. VNG0420h cluster01 -> 1qh5A0 7.5881983 260 / 61 conP: 0.052 CATH-ID: 3.60.15.10 Hydroxyacylglutathione hydrolase. Chain: a, b. Synonym: glyoxalase ii. VNG0420h cluster02 -> 1qhaA2 7.8077408 261 / 61 conP: 0.055 CATH-ID: 3.40.367.20 Hexokinase. Chain: a, b. Engineered: yes. Other_details: complexed wit VNG0420h cluster03 -> 1mup00 7.5881983 157 / 61 conP: 0.152 CATH-ID: 2.40.128.20 Major urinary protein complex with 2-(sec-butyl) thiazoline VNG0420h cluster04 -> 1bqcA0 7.9542094 302 / 61 conP: 0.036 CATH-ID: 3.20.20.80 Beta-mannanase. Chain: a. Ec: 3.2.1.78 VNG0420h cluster07 -> 1l1lA 8.5976482 717 / 61 conP: 0.000 NO-CATH --end-- VNG0424c one-of-top-five-correct: 0.16518958446772 CThresh: 8.527659 25 best_is: cluster13 VNG0424c cluster00 -> 1a5t02 5.6954638 40 / 129 conP: 0.245 CATH-ID: 1.10.8.10 Delta prime. Chain: null. Synonym: holb. Engineered: yes. Biological_u VNG0424c cluster01 -> 1a5t02 5.6954638 40 / 129 conP: 0.245 CATH-ID: 1.10.8.10 Delta prime. Chain: null. Synonym: holb. Engineered: yes. Biological_u VNG0424c cluster02 -> 1a5t02 5.6954638 40 / 129 conP: 0.245 CATH-ID: 1.10.8.10 Delta prime. Chain: null. Synonym: holb. Engineered: yes. Biological_u VNG0424c cluster03 -> 1a5t02 5.6954638 40 / 129 conP: 0.245 CATH-ID: 1.10.8.10 Delta prime. Chain: null. Synonym: holb. Engineered: yes. Biological_u VNG0424c cluster04 -> 1gtmA2 5.7018858 238 / 129 conP: 0.100 CATH-ID: 3.40.50.720 Glutamate dehydrogenase. Chain: a, b, c. Biological_unit: homohexamer VNG0424c cluster13 -> 1oacA1 5.7927602 80 / 129 conP: 0.211 CATH-ID: 3.30.457.10 Copper amine oxidase. Chain: a, b. Ec: 1.4.3.6 --end-- VNG0433c one-of-top-five-correct: 0.30030301410552 CThresh: 8.937856 25 best_is: cluster10 VNG0433c cluster00 -> 1bqg02 6.7387599 260 / 110 conP: 0.077 CATH-ID: 3.20.20.120 D-glucarate dehydratase. Chain: null. Engineered: yes. Biological_unit VNG0433c cluster01 -> 1poxA3 5.5316404 190 / 110 conP: 0.084 CATH-ID: 3.40.50.970 Pyruvate oxidase mutant with pro 178 replaced by ser, ser 188 replaced VNG0433c cluster02 -> 1jpsH 5.4697880 213 / 110 conP: 0.072 NO-CATH VNG0433c cluster03 -> 1ijrA 6.0449989 104 / 110 conP: 0.155 NO-CATH VNG0433c cluster04 -> 1c3qA0 6.3082973 272 / 110 conP: 0.064 CATH-ID: 3.90.77.20 His tag. Chain: x, y, z. Synonym: thz kinase. Engineered: yes. Hydroxy VNG0433c cluster10 -> 1guyA 8.5309986 296 / 110 conP: 0.100 NO-CATH --end-- VNG0435h one-of-top-five-correct: 0.234574481337323 CThresh: 6.172090 75 best_is: cluster00 VNG0435h cluster00 -> 1eg9A1 6.8783939 318 / 87 conP: 0.053 CATH-ID: 3.90.380.10 Naphthalene 1,2-dioxygenase alpha subunit. Chain: a. Engineered: yes. VNG0435h cluster01 -> 1qasA2 6.1437864 291 / 87 conP: 0.053 CATH-ID: 3.20.20.190 PhospholipasE C delta-1. Chain: a, b. Synonym: plc-delta-1. Engineered VNG0435h cluster02 -> 1kit03 5.9824135 187 / 87 conP: 0.110 CATH-ID: 2.60.120.200 Sialidase. Chain: null. Synonym: neuraminidase. Engineered: yes VNG0435h cluster03 -> 1bovA0 6.8302173 69 / 87 conP: 0.291 CATH-ID: 2.40.50.70 Verotoxin-1 (b-oligomer, also called shiga-like toxin-1) VNG0435h cluster04 -> 1sacA0 5.3907857 204 / 87 conP: 0.084 CATH-ID: 2.60.120.60 Serum amyloid p component (sap) --end-- VNG04360 one-of-top-five-correct: 0.451418156500607 CThresh: 5.920652 75 best_is: cluster15 VNG04360 cluster00 -> 1pjr02 7.9369549 72 / 105 conP: 0.421 CATH-ID: 1.10.10.160 Pcra. Chain: null. Engineered: yes VNG04360 cluster01 -> 1jf7A 8.0767485 281 / 105 conP: 0.158 NO-CATH VNG04360 cluster02 -> 1h97A0 7.6181083 147 / 105 conP: 0.287 CATH-ID: 1.10.490.10 Globin-3. Chain: a, b. Engineered: yes. Synonym: myoglobin, hemoglobin VNG04360 cluster03 -> 1hx8A 6.4511627 270 / 105 conP: 0.112 NO-CATH VNG04360 cluster04 -> 1cii03 7.8607136 157 / 105 conP: 0.288 CATH-ID: 1.10.490.30 Colicin ia. Chain: null. Engineered: yes. Biological_unit: monomer VNG04360 cluster15 -> 1mroA3 9.0584315 227 / 105 conP: 0.263 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: --end-- VNG04391 one-of-top-five-correct: 0.557195696557531 CThresh: 4.992416 75 best_is: cluster02 VNG04391 cluster00 -> 1cpy02 7.5192609 72 / 98 conP: 0.423 CATH-ID: 1.20.1030.10 Serine carboxypeptidase. Chain: null. Mutation: e65a, e145a VNG04391 cluster01 -> 1pbwA0 5.6865579 184 / 98 conP: 0.162 CATH-ID: 1.10.555.10 Phosphatidylinositol 3-kinase. Chain: a, b. Fragment: p85 alpha subuni VNG04391 cluster02 -> 1dowA 9.9595869 200 / 98 conP: 0.372 NO-CATH VNG04391 cluster03 -> 2bct00 5.6865579 502 / 98 conP: 0.020 CATH-ID: 1.25.30.10 Beta-catenin. Chain: null. Fragment: armadillo repeat region. Engineer VNG04391 cluster04 -> 1flp00 5.6865579 142 / 98 conP: 0.208 CATH-ID: 1.10.490.10 Hemoglobin i (monomeric) (ferric) --end-- VNG04510 one-of-top-five-correct: 0.794165884364241 CThresh: 1.781246 100 best_is: cluster17 VNG04510 cluster00 -> 1e2aA0 11.059085 102 / 90 conP: 0.751 CATH-ID: 1.20.1040.30 Enzyme iia. Chain: a, b, c. Synonym: enzyme iii, lactose-specific iia VNG04510 cluster01 -> 1e2aA0 11.428062 102 / 90 conP: 0.770 CATH-ID: 1.20.1040.30 Enzyme iia. Chain: a, b, c. Synonym: enzyme iii, lactose-specific iia VNG04510 cluster02 -> 1br0A0 10.386392 120 / 90 conP: 0.683 CATH-ID: 1.20.1040.20 Syntaxin 1-a. Chain: a. Fragment: n-terminal. Engineered: yes. Mutatio VNG04510 cluster03 -> 1e2aA0 10.690108 102 / 90 conP: 0.730 CATH-ID: 1.20.1040.30 Enzyme iia. Chain: a, b, c. Synonym: enzyme iii, lactose-specific iia VNG04510 cluster04 -> 1e2aA0 10.690108 102 / 90 conP: 0.730 CATH-ID: 1.20.1040.30 Enzyme iia. Chain: a, b, c. Synonym: enzyme iii, lactose-specific iia VNG04510 cluster17 -> 1br0A0 11.752706 120 / 90 conP: 0.762 CATH-ID: 1.20.1040.20 Syntaxin 1-a. Chain: a. Fragment: n-terminal. Engineered: yes. Mutatio --end-- VNG04511 one-of-top-five-correct: 0.889746066067625 CThresh: 3.594155 75 best_is: cluster02 VNG04511 cluster00 -> 2occC2 14.025743 191 / 115 conP: 0.794 CATH-ID: 1.20.120.80 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, VNG04511 cluster01 -> 1brrA0 11.867854 230 / 115 conP: 0.620 CATH-ID: 1.20.85.10 Bacteriorhodopsin. Chain: a, b, c. Synonym: br. Other_details: schiff VNG04511 cluster02 -> 1fftC0 14.025743 185 / 115 conP: 0.800 CATH-ID: 1.20.120.80 Ubiquinol oxidase. Chain: a, f. Engineered: yes. Ubiquinol oxidase. Ch VNG04511 cluster03 -> 1ez3A0 12.424343 124 / 115 conP: 0.785 CATH-ID: 1.20.1040.20 Syntaxin-1a. Chain: a, b, c. Fragment: n-terminal domain. Synonym: syn VNG04511 cluster04 -> 1fftC0 11.792128 185 / 115 conP: 0.677 CATH-ID: 1.20.120.80 Ubiquinol oxidase. Chain: a, f. Engineered: yes. Ubiquinol oxidase. Ch --end-- VNG04531 one-of-top-five-correct: 0.570321446102158 CThresh: 6.977629 59 best_is: cluster01 VNG04531 cluster00 -> 1bia02 7.2826050 181 / 110 conP: 0.200 CATH-ID: 3.30.930.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG04531 cluster01 -> 1fjgC1 10.732772 91 / 110 conP: 0.546 CATH-TRUNC VNG04531 cluster02 -> 1jvpP 5.5878412 281 / 110 conP: 0.075 NO-CATH VNG04531 cluster03 -> 1occH0 5.6535742 75 / 110 conP: 0.235 CATH-ID: 1.10.10.140 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, VNG04531 cluster04 -> 1gm6A 7.0287534 158 / 110 conP: 0.212 NO-CATH --end-- VNG04532 one-of-top-five-correct: 0.342228290326507 CThresh: 3.100806 75 best_is: cluster10 VNG04532 cluster00 -> 1af701 5.7663582 80 / 74 conP: 0.311 CATH-ID: 1.10.155.10 Chemotaxis receptor methyltransferase cher. Chain: null. Engineered: y VNG04532 cluster01 -> 1bwoA0 6.8162340 90 / 74 conP: 0.357 CATH-ID: 1.10.110.10 Nonspecific lipid-transfer protein. Chain: a, b. Synonym: ns-ltp1 VNG04532 cluster02 -> 1a81A2 6.1373296 45 / 74 conP: 0.412 CATH-ID: 1.10.930.10 Syk kinase. Chain: a, c, e, g, i, k. Fragment: tandem sh2 domain. Engi VNG04532 cluster03 -> 1ffvB3 5.5734860 166 / 74 conP: 0.159 CATH-ID: 3.30.176.10 Cuts, iron-sulfur protein of carbon monoxide dehydrogenase. Chain: a, VNG04532 cluster04 -> 1fadA0 5.0694599 95 / 74 conP: 0.243 CATH-ID: 1.10.533.10 Fadd protein. Chain: a. Fragment: death domain (residues 89-183). Engi VNG04532 cluster10 -> 1bwoA0 7.2304833 90 / 74 conP: 0.385 CATH-ID: 1.10.110.10 Nonspecific lipid-transfer protein. Chain: a, b. Synonym: ns-ltp1 --end-- VNG04551 one-of-top-five-correct: 0.467734421527929 CThresh: 3.762421 75 best_is: cluster01 VNG04551 cluster00 -> 1d8jA0 6.9571678 81 / 75 conP: 0.356 CATH-ID: 1.10.10.10 General transcription factor tfiie-beta. Chain: a. Fragment: central c VNG04551 cluster01 -> 1fafA0 8.9426223 79 / 75 conP: 0.499 CATH-ID: 1.20.15.80 Large t antigen. Chain: a. Fragment: n-terminal domain. Engineered: ye VNG04551 cluster02 -> 1gdj00 6.0623002 153 / 75 conP: 0.179 CATH-ID: 1.10.490.10 Leghemoglobin (deoxy) VNG04551 cluster03 -> 1e7aA4 7.2686445 86 / 75 conP: 0.366 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG04551 cluster04 -> 1uox00 5.9538435 295 / 75 conP: 0.053 CATH-ID: 3.10.270.10 Urate oxidase. Chain: null. Synonym: uricase. Biological_unit: tetrame --end-- VNG04581 one-of-top-five-correct: 0.893164611736854 CThresh: 2.694052 100 best_is: cluster12 VNG04581 cluster00 -> 1e2aA0 10.985862 102 / 117 conP: 0.776 CATH-ID: 1.20.1040.30 Enzyme iia. Chain: a, b, c. Synonym: enzyme iii, lactose-specific iia VNG04581 cluster01 -> 1e2aA0 13.105056 102 / 117 conP: 0.864 CATH-ID: 1.20.1040.30 Enzyme iia. Chain: a, b, c. Synonym: enzyme iii, lactose-specific iia VNG04581 cluster02 -> 2occC2 11.431046 191 / 117 conP: 0.698 CATH-ID: 1.20.120.80 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, VNG04581 cluster03 -> 1e2aA0 12.353504 102 / 117 conP: 0.837 CATH-ID: 1.20.1040.30 Enzyme iia. Chain: a, b, c. Synonym: enzyme iii, lactose-specific iia VNG04581 cluster04 -> 2occC2 9.5296993 191 / 117 conP: 0.572 CATH-ID: 1.20.120.80 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, VNG04581 cluster12 -> 1e2aA0 13.668719 102 / 117 conP: 0.882 CATH-ID: 1.20.1040.30 Enzyme iia. Chain: a, b, c. Synonym: enzyme iii, lactose-specific iia --end-- VNG04582 one-of-top-five-correct: 0.815292515579991 CThresh: 4.754621 75 best_is: cluster02 VNG04582 cluster00 -> 1dnpA3 8.4401229 181 / 101 conP: 0.329 CATH-ID: 1.10.579.10 DNA photolyase. Chain: a, b. Synonym: DNA cyclobutane dipyrimidine pho VNG04582 cluster01 -> 1di1A0 10.786028 290 / 101 conP: 0.312 CATH-ID: 1.10.615.10 Aristolochene synthase. Chain: a, b. Synonym: sesquiterpene cyclase, a VNG04582 cluster02 -> 14psA0 13.219032 226 / 101 conP: 0.588 CATH-ID: 1.20.190.20 14-3-3 protein zeta/delta. Chain: a, b. Engineered: yes. Biological_un VNG04582 cluster03 -> 1fftC0 6.3671384 185 / 101 conP: 0.208 CATH-ID: 1.20.120.80 Ubiquinol oxidase. Chain: a, f. Engineered: yes. Ubiquinol oxidase. Ch VNG04582 cluster04 -> 1e7aA5 8.7273321 112 / 101 conP: 0.462 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes --end-- VNG0462c one-of-top-five-correct: 0.57056183057014 CThresh: 3.986036 75 best_is: cluster01 VNG0462c cluster00 -> 1bi2B1 8.4211293 73 / 93 conP: 0.527 CATH-ID: 1.10.10.10 Diphtheria toxin repressor. Chain: a, b. Synonym: dtxr. Engineered: ye VNG0462c cluster01 -> 1bi2B1 9.7658357 73 / 93 conP: 0.621 CATH-ID: 1.10.10.10 Diphtheria toxin repressor. Chain: a, b. Synonym: dtxr. Engineered: ye VNG0462c cluster02 -> 1qba03 8.1343726 484 / 93 conP: 0.044 CATH-ID: 3.20.20.80 Chitobiase. Chain: null. Synonym: beta-n-acetylhexosaminidase, n-acety VNG0462c cluster03 -> 1bia01 7.6613066 64 / 93 conP: 0.489 CATH-ID: 1.10.10.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG0462c cluster04 -> 1bby00 8.5724182 69 / 93 conP: 0.545 CATH-ID: 1.10.10.10 Rap30. Chain: null. Fragment: DNA-binding domain. Synonym: transcripti --end-- VNG0471c one-of-top-five-correct: 0.614127645527971 CThresh: 1.495804 100 best_is: cluster00 VNG0471c cluster00 -> 1lmb30 9.7683340 87 / 65 conP: 0.618 CATH-ID: 1.10.260.10 Lambda repressor/operator complex VNG0471c cluster01 -> 1r6900 7.4383519 63 / 65 conP: 0.517 CATH-ID: 1.10.260.10 434 repressor (amino-terminal domain) (r1-69) VNG0471c cluster02 -> 1b0nA0 9.3375551 103 / 65 conP: 0.546 CATH-ID: 1.10.260.10 Sinr protein. Chain: a. Engineered: yes. Sini protein. Chain: b. Engin VNG0471c cluster03 -> 1b0nA0 6.1067133 103 / 65 conP: 0.321 CATH-ID: 1.10.260.10 Sinr protein. Chain: a. Engineered: yes. Sini protein. Chain: b. Engin VNG0471c cluster04 -> 1b0nA0 7.1836606 103 / 65 conP: 0.392 CATH-ID: 1.10.260.10 Sinr protein. Chain: a. Engineered: yes. Sini protein. Chain: b. Engin --end-- VNG0472h one-of-top-five-correct: 0.556967443325415 CThresh: 8.920425 25 best_is: cluster03 VNG0472h cluster00 -> 1d5aA5 7.4133326 54 / 137 conP: 0.326 CATH-ID: 1.20.15.250 DNA polymerase. Chain: a. Engineered: yes VNG0472h cluster01 -> 1di1A0 7.5262113 290 / 137 conP: 0.130 CATH-ID: 1.10.615.10 Aristolochene synthase. Chain: a, b. Synonym: sesquiterpene cyclase, a VNG0472h cluster02 -> 1r2fA0 9.5456176 283 / 137 conP: 0.217 CATH-ID: 1.10.620.20 Ribonucleotide reductase r2. Chain: a, b. Engineered: yes VNG0472h cluster03 -> 1cunA1 10.850402 102 / 137 conP: 0.505 CATH-ID: 1.20.1040.10 Alpha spectrin. Chain: a, b, c. Fragment: repeats 16 and 17 (residues VNG0472h cluster04 -> 8abp02 7.3589058 167 / 137 conP: 0.211 CATH-ID: 3.40.50.2600 L- Arabinose-binding protein (mutant with met 108 replaced by leu) ( M --end-- VNG04730 one-of-top-five-correct: 0.29971716004495 CThresh: 4.271733 75 best_is: cluster19 VNG04730 cluster00 -> 1dluA1 5.8913239 203 / 65 conP: 0.075 CATH-ID: 3.40.47.10 Biosynthetic thiolase. Chain: a, b, c, d. Engineered: yes VNG04730 cluster01 -> 1uaaA4 5.4605450 162 / 65 conP: 0.100 CATH-ID: 1.10.486.10 Atp-dependent DNA helicase rep. Chain: a, b. Engineered: yes. DNA (5'- VNG04730 cluster02 -> 1jweA0 5.4605450 114 / 65 conP: 0.157 CATH-ID: 1.10.860.10 Dnab helicase. Chain: a. Fragment: n-terminal domain. Engineered: yes. VNG04730 cluster03 -> 1hndA 5.2451555 317 / 65 conP: 0.019 NO-CATH VNG04730 cluster04 -> 1e5dA1 5.9933863 143 / 65 conP: 0.137 CATH-ID: 3.40.50.360 Rubredoxin:oxygen oxidoreductase. Chain: a, b VNG04730 cluster19 -> 1tlfA1 7.4318940 131 / 65 conP: 0.215 CATH-ID: 3.40.50.2300 Tryptic core fragment of the lactose repressor of escherichia coli --end-- VNG04810 one-of-top-five-correct: 0.443770156609954 CThresh: 4.342186 75 best_is: cluster09 VNG04810 cluster00 -> 1h80A 6.0135677 433 / 80 conP: 0.018 NO-CATH VNG04810 cluster01 -> 9gafA2 7.0065206 143 / 80 conP: 0.237 CATH-ID: 3.50.11.10 Glycosylasparaginase. Chain: a, c. Synonym: glycoasparaginase,aspartyl VNG04810 cluster02 -> 9gafA2 8.6248678 143 / 80 conP: 0.331 CATH-ID: 3.50.11.10 Glycosylasparaginase. Chain: a, c. Synonym: glycoasparaginase,aspartyl VNG04810 cluster03 -> 1rypA0 6.8042272 243 / 80 conP: 0.109 CATH-ID: 3.60.20.10 20s proteasome. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, VNG04810 cluster04 -> 1dykA2 5.6160581 175 / 80 conP: 0.136 CATH-ID: 2.60.120.60 Laminin alpha 2 chain. Chain: a. Fragment: laminin g-like domain 4-5 p VNG04810 cluster09 -> 1qd9A0 8.8271612 124 / 80 conP: 0.382 CATH-ID: 3.30.70.130 Purine regulatory protein yabj. Chain: a, b, c. Engineered: yes --end-- VNG04820 one-of-top-five-correct: 0.379640828467527 CThresh: 4.234668 75 best_is: cluster12 VNG04820 cluster00 -> 1e7aA5 6.8748386 112 / 78 conP: 0.278 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG04820 cluster01 -> 1bvsA3 5.9527819 44 / 78 conP: 0.352 CATH-ID: 1.10.8.10 Ruva. Chain: a, b, c, d, e, f, g, h. Engineered: yes. Biological_unit: VNG04820 cluster02 -> 1qspA0 5.3604191 165 / 78 conP: 0.134 CATH-ID: 1.20.120.160 Ypd1. Chain: a, b. Engineered: yes. Biological_unit: monomer VNG04820 cluster03 -> 1qo0D2 5.8426196 46 / 78 conP: 0.341 CATH-ID: 1.10.15.10 Amic. Chain: a, b. Fragment: amide receptor. Engineered: yes. Other_de VNG04820 cluster04 -> 1bgf00 6.3705462 124 / 78 conP: 0.230 CATH-ID: 1.10.532.10 Stat-4. Chain: null. Fragment: n-terminal domain. Engineered: yes. Bio VNG04820 cluster12 -> 1qsmB0 8.0979451 149 / 78 conP: 0.282 CATH-ID: 3.40.630.30 Hpa2 histone acetyltransferase. Chain: a, b, c, d. Engineered: yes --end-- VNG04821 one-of-top-five-correct: 0.216026514722137 CThresh: 4.878860 75 best_is: cluster09 VNG04821 cluster00 -> 1pbwA0 6.4562639 184 / 67 conP: 0.099 CATH-ID: 1.10.555.10 Phosphatidylinositol 3-kinase. Chain: a, b. Fragment: p85 alpha subuni VNG04821 cluster01 -> 1bt4A1 4.9622380 242 / 67 conP: 0.037 CATH-ID: 3.40.640.10 Phosphoserine aminotransferase. Chain: a. Fragment: one complete subun VNG04821 cluster02 -> 1gweA 5.3891025 498 / 67 conP: 0.003 NO-CATH VNG04821 cluster03 -> 1qsaA2 4.6074290 70 / 67 conP: 0.175 CATH-ID: 1.10.1240.20 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein VNG04821 cluster04 -> 1e68A0 5.7663233 70 / 67 conP: 0.228 CATH-ID: 1.20.225.10 Bacteriocin as-48. Chain: a. Fragment: bacteriocin as-48 residue 36-10 VNG04821 cluster09 -> 1bdfA2 6.4562639 120 / 67 conP: 0.176 CATH-ID: 2.170.120.12 RNA polymerase alpha subunit. Chain: a, b, c, d. Fragment: n-terminal --end-- VNG04831 one-of-top-five-correct: 0.283938096633868 CThresh: 6.095769 75 best_is: cluster03 VNG04831 cluster00 -> 1jjuA 6.6655659 489 / 97 conP: 0.021 NO-CATH VNG04831 cluster01 -> 4monA 5.7107765 44 / 97 conP: 0.291 NO-CATH VNG04831 cluster02 -> 4monA 5.7107765 44 / 97 conP: 0.291 NO-CATH VNG04831 cluster03 -> 1ospO2 7.3214059 76 / 97 conP: 0.341 CATH-ID: 2.20.50.10 Fab 184.1. Chain: l, h. Outer surface protein a. Chain: o. Synonym: os VNG04831 cluster04 -> 4monA 5.7107765 44 / 97 conP: 0.291 NO-CATH --end-- VNG04840 one-of-top-five-correct: 0.269624032216516 CThresh: 6.998792 51 best_is: cluster15 VNG04840 cluster00 -> 1dj0A1 5.0878243 138 / 114 conP: 0.156 CATH-ID: 3.30.70.660 Pseudouridine synthase i. Chain: a, b. Engineered: yes VNG04840 cluster01 -> 1hndA 5.5088674 317 / 114 conP: 0.065 NO-CATH VNG04840 cluster02 -> 1d4tA0 4.4318696 104 / 114 conP: 0.158 CATH-ID: 3.30.505.10 T cell signal transduction molecule sap. Chain: a. Fragment: sh2 domai VNG04840 cluster03 -> 1hndA 4.5625130 317 / 114 conP: 0.050 NO-CATH VNG04840 cluster04 -> 2ilk01 4.7564856 106 / 114 conP: 0.170 CATH-ID: 1.20.120.200 Interleukin-10. Chain: null. Engineered: yes VNG04840 cluster15 -> 1broA0 7.1480476 277 / 114 conP: 0.125 CATH-ID: 3.40.50.950 Bromoperoxidase a2. Chain: a, b. Synonym: haloperoxidase a2, chloroper --end-- VNG0485h one-of-top-five-correct: 0.29106495688856 CThresh: 7.096756 25 best_is: cluster10 VNG0485h cluster00 -> 2gsaA1 5.1658968 178 / 128 conP: 0.152 CATH-ID: 3.30.70.160 Glutamate semialdehyde aminotransferase. Chain: a, b. Synonym: glutama VNG0485h cluster01 -> 1tml00 5.0843533 286 / 128 conP: 0.088 CATH-ID: 3.20.20.40 Endo-1,4-beta-d-glucanase VNG0485h cluster02 -> 1auk_ 5.3603067 480 / 128 conP: 0.035 NO-CATH VNG0485h cluster03 -> 1f3mA0 5.9990186 70 / 128 conP: 0.291 CATH-ID: 3.90.810.10 Serine/threonine-protein kinase pak-alpha. Chain: a, b. Fragment: pak1 VNG0485h cluster04 -> 1b3jA1 6.4063292 170 / 128 conP: 0.211 CATH-ID: 3.30.500.10 Mhc class i homolog mic-a. Chain: a. Fragment: extracellular domain, r VNG0485h cluster10 -> 1b3jA1 7.1647294 170 / 128 conP: 0.250 CATH-ID: 3.30.500.10 Mhc class i homolog mic-a. Chain: a. Fragment: extracellular domain, r --end-- VNG04870 one-of-top-five-correct: 0.221209418670352 CThresh: 5.636951 75 best_is: cluster07 VNG04870 cluster00 -> 1ipiA 6.8831284 114 / 67 conP: 0.178 NO-CATH VNG04870 cluster01 -> 1abmA0 6.4562639 198 / 67 conP: 0.074 CATH-ID: 3.90.149.10 Manganese superoxide dismutase VNG04870 cluster02 -> 1mnmA 4.7488057 85 / 67 conP: 0.137 NO-CATH VNG04870 cluster03 -> 2phy00 6.5276455 125 / 67 conP: 0.149 CATH-ID: 3.30.450.20 Photoactive yellow protein. Chain: null. Synonym: pyp VNG04870 cluster04 -> 1httA2 6.3428811 98 / 67 conP: 0.180 CATH-ID: 3.40.50.800 Histidyl-tRNA synthetase. Chain: a, b, c, d. Synonym: histidine-tRNA l VNG04870 cluster07 -> 9gafA2 6.8831284 143 / 67 conP: 0.138 CATH-ID: 3.50.11.10 Glycosylasparaginase. Chain: a, c. Synonym: glycoasparaginase,aspartyl --end-- VNG0496h one-of-top-five-correct: 0.149041949874546 CThresh: 10.000094 25 best_is: cluster02 VNG0496h cluster00 -> 1bgh00 5.6442498 85 / 126 conP: 0.148 CATH-ID: 2.40.50.10 Gene v protein (single-stranded DNA binding protein) VNG0496h cluster01 -> 1molA0 5.6769700 94 / 126 conP: 0.143 CATH-ID: 3.10.30.10 Monellin (single-chain, fused) VNG0496h cluster02 -> 4monA 6.1947873 44 / 126 conP: 0.204 NO-CATH VNG0496h cluster03 -> 1kffA 5.2304354 120 / 126 conP: 0.113 NO-CATH VNG0496h cluster04 -> 1bgh00 4.6512143 85 / 126 conP: 0.115 CATH-ID: 2.40.50.10 Gene v protein (single-stranded DNA binding protein) --end-- VNG04990 one-of-top-five-correct: 0.442687653226523 CThresh: 3.726897 75 best_is: cluster07 VNG04990 cluster00 -> 1bqv00 6.7108836 110 / 66 conP: 0.244 CATH-ID: 1.20.800.10 Ets-1. Chain: null. Fragment: pointed domain and map kinase phosphoryl VNG04990 cluster01 -> 1amx00 4.9956718 150 / 66 conP: 0.114 CATH-ID: 2.60.40.740 Collagen adhesin. Chain: null. Fragment: cbd (151 - 318). Synonym: cbd VNG04990 cluster02 -> 1d7uA1 5.2100733 141 / 66 conP: 0.131 CATH-ID: 3.30.70.160 2,2-dialkylglycine decarboxylase (pyruvate). Chain: a. Synonym: dgd. E VNG04990 cluster03 -> 1dusA0 8.2116939 192 / 66 conP: 0.173 CATH-ID: 3.40.50.150 Mj0882. Chain: a. Engineered: yes VNG04990 cluster04 -> 1ako00 7.9972924 268 / 66 conP: 0.081 CATH-ID: 3.60.10.10 Exonuclease iii. Chain: null. Engineered: yes. Biological_unit: monome VNG04990 cluster07 -> 1glaG2 8.8548983 254 / 66 conP: 0.115 CATH-ID: 3.40.367.10 Glycerol kinase complex with glycerol and the (escherichia coli) gluco --end-- VNG04992 one-of-top-five-correct: 0.282828698927499 CThresh: 6.179591 75 best_is: cluster16 VNG04992 cluster00 -> 1eu8A1 7.0160320 190 / 86 conP: 0.137 CATH-ID: 3.40.190.10 Trehalose/maltose binding protein. Chain: a. Engineered: yes VNG04992 cluster01 -> 1hyhA1 6.4285971 141 / 86 conP: 0.167 CATH-ID: 3.40.50.720 L-2-hydroxyisocaproate dehydrogenase. Chain: a, b, c, d. Synonym: l-hi VNG04992 cluster02 -> 2hgsA4 7.0012303 122 / 86 conP: 0.216 CATH-ID: 3.40.50.1760 Glutathione synthetase. Chain: a. Engineered: yes. Biological_unit: ho VNG04992 cluster03 -> 1moq02 7.4986861 148 / 86 conP: 0.205 CATH-ID: 3.40.50.1940 Glucosamine 6-phosphate synthase. Chain: null. Synonym: l-glutamine\:d VNG04992 cluster04 -> 1httA1 6.8033273 267 / 86 conP: 0.074 CATH-ID: 3.40.690.10 Histidyl-tRNA synthetase. Chain: a, b, c, d. Synonym: histidine-tRNA l VNG04992 cluster16 -> 2lbp02 7.5949393 145 / 86 conP: 0.213 CATH-ID: 3.40.50.3600 Leucine-binding protein ( LBP ) --end-- VNG05041 one-of-top-five-correct: 0.313115503209723 CThresh: 5.356267 75 best_is: cluster09 VNG05041 cluster00 -> 1ayj00 5.8724385 50 / 72 conP: 0.266 CATH-ID: 3.30.30.10 Antifungal protein 1. Chain: null. Synonym: rs-afp1 VNG05041 cluster01 -> 1vdeA2 6.2661790 94 / 72 conP: 0.209 CATH-ID: 3.10.28.10 Pi-scei. Chain: a, b. Engineered: yes VNG05041 cluster02 -> 1jwbB 6.0573320 240 / 72 conP: 0.057 NO-CATH VNG05041 cluster03 -> 2yhx_ 4.8042500 457 / 72 conP: 0.005 NO-CATH VNG05041 cluster04 -> 1apyA0 5.7493496 161 / 72 conP: 0.106 CATH-ID: 3.30.426.10 Aspartylglucosaminidase. Chain: a, b, c, d. Synonym: aga, glycosylaspa VNG05041 cluster09 -> 1cbf02 7.9369549 121 / 72 conP: 0.247 CATH-ID: 3.30.950.10 Cobalt-precorrin-4 transmethylase. Chain: null. Synonym: precorrin-4 m --end-- VNG0506h one-of-top-five-correct: 0.218256379023883 CThresh: 2.691485 100 best_is: cluster11 VNG0506h cluster00 -> 1soxB1 5.3333745 84 / 42 conP: 0.156 CATH-ID: 3.10.120.10 Sulfite oxidase. Chain: a, b. Biological_unit: dimer VNG0506h cluster01 -> 1a1700 5.0880204 159 / 42 conP: 0.047 CATH-ID: 1.25.40.10 Serine/threonine protein phosphatase 5. Chain: null. Fragment: protein VNG0506h cluster02 -> 1g4aA0 4.3519581 173 / 42 conP: 0.031 CATH-ID: 3.60.20.10 Atp-dependent hsl protease atp-binding subunit hslu. Chain: e, f. Syno VNG0506h cluster03 -> 1qckA0 5.3333745 89 / 42 conP: 0.145 CATH-ID: 1.10.150.40 Barrier-to-autointegration factor. Chain: a, b. Engineered: yes VNG0506h cluster04 -> 2kinB 3.8612499 100 / 42 conP: 0.085 NO-CATH VNG0506h cluster11 -> 1bq7A0 6.0694368 186 / 42 conP: 0.040 CATH-ID: 3.40.30.10 Disulfide oxidoreductase. Chain: a, b, c, d, e, f. Synonym: dsba. Engi --end-- VNG0508h one-of-top-five-correct: 0.211987290615378 CThresh: 4.667376 75 best_is: cluster12 VNG0508h cluster00 -> 1bu2A1 4.8481476 112 / 64 conP: 0.125 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG0508h cluster01 -> 3ecaA2 5.2809413 114 / 64 conP: 0.136 CATH-ID: 3.40.50.40 Asparaginase type ii (eca) VNG0508h cluster02 -> 1eh6A1 4.6446874 71 / 64 conP: 0.174 CATH-ID: 2.30.37.60 O6-alkylguanine-DNA alkyltransferase. Chain: a. Synonym: agt, o6-methy VNG0508h cluster03 -> 1befA2 5.2809413 85 / 64 conP: 0.178 CATH-ID: 2.40.10.10 Dengue virus ns3 serine protease. Chain: a. Fragment: protease domain, VNG0508h cluster04 -> 3ecaA2 5.2809413 114 / 64 conP: 0.136 CATH-ID: 3.40.50.40 Asparaginase type ii (eca) VNG0508h cluster12 -> 1b37A2 6.3629255 218 / 64 conP: 0.065 CATH-ID: 3.90.660.10 Polyamine oxidase. Chain: a, b, c. Fragment: fad-binding domain. Ec: 1 --end-- VNG0509h one-of-top-five-correct: 0.281644535856976 CThresh: 1.552352 100 best_is: cluster11 VNG0509h cluster00 -> 1lla01 5.9527819 357 / 44 conP: 0.004 CATH-ID: 1.10.639.10 Hemocyanin (subunit type ii) VNG0509h cluster01 -> 1ap700 5.9527819 168 / 44 conP: 0.075 CATH-ID: 1.25.40.20 P19-ink4d. Chain: null. Synonym: cyclin dependent kinase 4 inhibitor d VNG0509h cluster02 -> 1i9tA0 4.2587442 189 / 44 conP: 0.034 CATH-ID: 3.90.190.10 mRNA capping enzyme. Chain: a. Fragment: tpase domain (residues 1-210) VNG0509h cluster03 -> 1mdl02 5.4687711 230 / 44 conP: 0.026 CATH-ID: 3.20.20.120 Mandelate racemase. Chain: null. Engineered: yes. Mutation: k166r VNG0509h cluster04 -> 1aisB1 5.4687711 99 / 44 conP: 0.175 CATH-ID: 1.10.472.10 Tata-binding protein. Chain: a. Fragment: residues 1 - 181. Synonym: t VNG0509h cluster11 -> 1a1700 6.4367926 159 / 44 conP: 0.097 CATH-ID: 1.25.40.10 Serine/threonine protein phosphatase 5. Chain: null. Fragment: protein --end-- VNG05100 one-of-top-five-correct: 0.356215915383497 CThresh: 3.413457 75 best_is: cluster00 VNG05100 cluster00 -> 1dceA1 8.0189588 317 / 53 conP: 0.022 CATH-ID: 1.25.40.120 Rab geranylgeranyltransferase alpha subunit. Chain: a, c. Rab geranylg VNG05100 cluster01 -> 1hyp00 7.3320112 75 / 53 conP: 0.312 CATH-ID: 1.10.110.10 Hydrophobic protein from soybean VNG05100 cluster02 -> 1dceA1 6.1870985 317 / 53 conP: 0.013 CATH-ID: 1.25.40.120 Rab geranylgeranyltransferase alpha subunit. Chain: a, c. Rab geranylg VNG05100 cluster03 -> 1aua02 6.4160811 83 / 53 conP: 0.238 CATH-ID: 1.10.8.20 Phosphatidylinositol transfer protein sec14p. Chain: null. Engineered: VNG05100 cluster04 -> 1fz1F2 6.4160811 73 / 53 conP: 0.263 CATH-ID: 1.20.88.10 Methane monooxygenase component a, alpha chain. Chain: a, b. Synonym: --end-- VNG0511h one-of-top-five-correct: 0.535348115328704 CThresh: 2.814845 100 best_is: cluster07 VNG0511h cluster00 -> 1bjaA0 7.3978421 95 / 75 conP: 0.405 CATH-ID: 1.10.10.10 Transcription regulatory protein mota. Chain: a, b. Fragment: n-termin VNG0511h cluster01 -> 1bjaA0 6.5712883 95 / 75 conP: 0.349 CATH-ID: 1.10.10.10 Transcription regulatory protein mota. Chain: a, b. Fragment: n-termin VNG0511h cluster02 -> 1gln05 7.6972042 98 / 75 conP: 0.419 CATH-ID: 1.10.10.350 Glutamyl-tRNA synthetase. Chain: null VNG0511h cluster03 -> 1bgxT6 7.1785851 144 / 75 conP: 0.288 CATH-ID: 1.10.473.10 Taq DNA polymerase. Chain: t. Engineered: yes. Biological_unit: monome VNG0511h cluster04 -> 1gln05 7.3978421 98 / 75 conP: 0.399 CATH-ID: 1.10.10.350 Glutamyl-tRNA synthetase. Chain: null VNG0511h cluster07 -> 1c9bA2 9.2544118 106 / 75 conP: 0.512 CATH-ID: 1.10.472.10 General transcription factor iib. Chain: a, e, i, m, q. Fragment: c-te --end-- VNG05121 one-of-top-five-correct: 0.298972843387475 CThresh: 5.100916 75 best_is: cluster05 VNG05121 cluster00 -> 1j51A 7.3203282 405 / 77 conP: 0.024 NO-CATH VNG05121 cluster01 -> 1bf5A3 6.2010838 121 / 77 conP: 0.191 CATH-ID: 1.10.238.10 Stat-1. Chain: a. Engineered: yes. Biological_unit: dimer. DNA. Chain: VNG05121 cluster02 -> 1qazA0 7.3203282 351 / 77 conP: 0.039 CATH-ID: 1.50.40.20 Alginate lyase a1-iii. Chain: a. Engineered: yes. Biological_unit: mon VNG05121 cluster03 -> 1cpt00 6.9110299 412 / 77 conP: 0.020 CATH-ID: 1.10.630.10 Cytochrome p450-terp VNG05121 cluster04 -> 1aipC3 6.6450636 53 / 77 conP: 0.332 CATH-ID: 1.10.8.30 Elongation factor tu. Chain: a, b, e, f. Synonym: ef-tu. Engineered: y VNG05121 cluster05 -> 1cpt00 7.5249773 412 / 77 conP: 0.024 CATH-ID: 1.10.630.10 Cytochrome p450-terp --end-- VNG0516h one-of-top-five-correct: 0.249591233403198 CThresh: 6.809231 75 best_is: cluster17 VNG0516h cluster00 -> 1broA0 4.9288066 277 / 82 conP: 0.031 CATH-ID: 3.40.50.950 Bromoperoxidase a2. Chain: a, b. Synonym: haloperoxidase a2, chloroper VNG0516h cluster01 -> 1qrjB1 5.4747389 114 / 82 conP: 0.132 CATH-ID: 1.10.375.10 His tag. Chain: a. Engineered: yes. Htlv-i capsid protein. Chain: b. E VNG0516h cluster02 -> 1a8vA1 5.1649976 49 / 82 conP: 0.196 CATH-ID: 1.10.720.10 Transcription termination factor rho. Chain: a, b. Fragment: RNA-bindi VNG0516h cluster03 -> 1ehyA0 5.1295911 282 / 82 conP: 0.032 CATH-ID: 3.40.50.950 Soluble epoxide hydrolase. Chain: a, b, c, d. Engineered: yes. Biologi VNG0516h cluster04 -> 1ie8A0 4.3767064 250 / 82 conP: 0.034 CATH-ID: 1.10.565.10 Vitamin d3 receptor. Chain: a. Synonym: 1,25-dihydroxyvitamin d3 recep VNG0516h cluster17 -> 1bob03 7.5053070 54 / 82 conP: 0.314 CATH-ID: 1.10.900.10 Histone acetyltransferase. Chain: null. Synonym: hat1. Engineered: yes --end-- VNG0518h one-of-top-five-correct: 0.192227502635843 CThresh: 0.832254 100 best_is: cluster03 VNG0518h cluster00 -> 1a3c00 4.9255682 166 / 36 conP: 0.037 CATH-ID: 3.40.50.90 Pyrimidine operon regulatory protein pyrr. Chain: null. Synonym: pyrr. VNG0518h cluster01 -> 1a4iA2 4.9255682 89 / 36 conP: 0.147 CATH-ID: 3.40.50.2050 Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyc VNG0518h cluster02 -> 1a3c00 4.9255682 166 / 36 conP: 0.037 CATH-ID: 3.40.50.90 Pyrimidine operon regulatory protein pyrr. Chain: null. Synonym: pyrr. VNG0518h cluster03 -> 1a1s02 4.9255682 160 / 36 conP: 0.042 CATH-ID: 3.40.50.1370 Ornithine carbamoyltransferase. Chain: null. Synonym: ornithine transc VNG0518h cluster04 -> 1a3c00 4.9255682 166 / 36 conP: 0.037 CATH-ID: 3.40.50.90 Pyrimidine operon regulatory protein pyrr. Chain: null. Synonym: pyrr. --end-- VNG0520h one-of-top-five-correct: 0.266283937015658 CThresh: 4.497588 75 best_is: cluster18 VNG0520h cluster00 -> 1dm0A 4.3284604 264 / 60 conP: 0.019 NO-CATH VNG0520h cluster01 -> 1bi103 4.8800014 74 / 60 conP: 0.172 CATH-ID: 2.30.30.120 Diphtheria toxin repressor. Chain: null. Synonym: dtxr. Engineered: ye VNG0520h cluster02 -> 1jxpA1 4.3284604 88 / 60 conP: 0.131 CATH-ID: 2.40.10.120 Ns3 serine protease. Chain: a, b. Synonym: hydrolase. Engineered: yes. VNG0520h cluster03 -> 1ospO1 5.2109993 73 / 60 conP: 0.188 CATH-ID: 2.30.70.11 Fab 184.1. Chain: l, h. Outer surface protein a. Chain: o. Synonym: os VNG0520h cluster04 -> 1quqB0 4.3284604 114 / 60 conP: 0.100 CATH-ID: 2.40.50.10 Replication protein a 32 kd subunit. Chain: a, c. Fragment: central do VNG0520h cluster18 -> 1bpoA1 7.1967117 332 / 60 conP: 0.020 CATH-ID: 2.130.30.10 Clathrin. Chain: a, b, c. Fragment: terminal domain and linker. Engine --end-- VNG05270 one-of-top-five-correct: 0.294401700872515 CThresh: 6.967478 50 best_is: cluster11 VNG05270 cluster00 -> 1qsaA1 5.5878412 363 / 110 conP: 0.046 CATH-ID: 1.25.20.10 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein VNG05270 cluster01 -> 1qgkA 5.8323514 876 / 110 conP: 0.002 NO-CATH VNG05270 cluster02 -> 1fcdC2 5.0437711 96 / 110 conP: 0.184 CATH-ID: 1.10.1250.10 FlavocytochromE C sulfide dehydrogenase (fcsd) VNG05270 cluster03 -> 1qsaA2 5.1904112 70 / 110 conP: 0.218 CATH-ID: 1.10.1240.20 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein VNG05270 cluster04 -> 1bg602 4.9875701 146 / 110 conP: 0.139 CATH-ID: 1.10.1040.10 N-(1-d-carboxylethyl)-l-norvaline dehydrogenase. Chain: null. Engineer VNG05270 cluster11 -> 1a6s00 7.5600876 87 / 110 conP: 0.331 CATH-ID: 1.10.150.90 Gag polyprotein. Chain: null. Fragment: m-domain. Engineered: yes. Mut --end-- VNG0532h one-of-top-five-correct: 0.236615703859849 CThresh: 8.554848 25 best_is: cluster12 VNG0532h cluster00 -> 1f3cA0 5.0350392 89 / 124 conP: 0.162 CATH-ID: 3.30.740.10 Dynein. Chain: a, b. Fragment: 8kda light chain. Synonym: protein inhi VNG0532h cluster01 -> 1mdc00 5.2215840 131 / 124 conP: 0.139 CATH-ID: 2.40.128.20 Fatty acid binding protein (manduca sexta) (mfb2) VNG0532h cluster02 -> 1ew4A0 7.0941953 106 / 124 conP: 0.241 CATH-ID: 3.30.920.10 Cyay protein. Chain: a. Engineered: yes VNG0532h cluster03 -> 1ebmA1 5.3597038 89 / 124 conP: 0.175 CATH-ID: 3.30.310.40 8-oxoguanine DNA glycosylase. Chain: a. Fragment: core fragment (resid VNG0532h cluster04 -> 1dpuA0 6.5738063 69 / 124 conP: 0.252 CATH-ID: 1.10.10.10 Replication protein a (rpa32) c-terminal domain. Chain: a. Fragment: c VNG0532h cluster12 -> 1shcA0 7.1475237 195 / 124 conP: 0.163 CATH-ID: 2.30.29.30 Shc. Chain: a. Fragment: ptb domain. Engineered: yes. Trka receptor ph --end-- VNG05340 one-of-top-five-correct: 0.607297073546751 CThresh: 4.599920 75 best_is: cluster05 VNG05340 cluster00 -> 1a6q02 6.5896480 69 / 102 conP: 0.396 CATH-ID: 1.10.920.10 Phosphatase 2c. Chain: null. Engineered: yes VNG05340 cluster01 -> 1flp00 7.0926468 142 / 102 conP: 0.315 CATH-ID: 1.10.490.10 Hemoglobin i (monomeric) (ferric) VNG05340 cluster02 -> 1a6q02 6.8972041 69 / 102 conP: 0.417 CATH-ID: 1.10.920.10 Phosphatase 2c. Chain: null. Engineered: yes VNG05340 cluster03 -> 1elkA0 8.3218778 153 / 102 conP: 0.378 CATH-ID: 1.25.40.90 Target of myb1. Chain: a, b. Fragment: vhs domain. Engineered: yes. Mu VNG05340 cluster04 -> 1jp6A 7.8441978 152 / 102 conP: 0.347 NO-CATH VNG05340 cluster05 -> 1cpcA0 10.254924 162 / 102 conP: 0.499 CATH-ID: 1.10.490.20 C-phycocyanin --end-- VNG05341 one-of-top-five-correct: 0.480623666554861 CThresh: 3.557503 75 best_is: cluster07 VNG05341 cluster00 -> 1cy5A0 5.5731961 92 / 62 conP: 0.211 CATH-ID: 1.10.533.10 Apoptotic protease activating factor 1. Chain: a. Fragment: caspase re VNG05341 cluster01 -> 1bgvA3 7.3209771 76 / 62 conP: 0.347 CATH-ID: 1.10.285.10 Glutamate dehydrogenase. Chain: a. Biological_unit: homohexamer VNG05341 cluster02 -> 1qm9A2 4.9177782 89 / 62 conP: 0.187 CATH-ID: 3.30.70.330 Polypyrimidine tract-binding protein. Chain: a. Fragment: RNA binding VNG05341 cluster03 -> 1a1w00 6.6655592 83 / 62 conP: 0.289 CATH-ID: 1.10.533.10 Fadd protein. Chain: null. Fragment: death effector domain. Synonym: f VNG05341 cluster04 -> 1dgnA0 8.1948677 89 / 62 conP: 0.371 CATH-ID: 1.10.533.10 Iceberg (protease inhibitor). Chain: a. Fragment: residues 2-90. Engin VNG05341 cluster07 -> 1lddA 9.2872308 74 / 62 conP: 0.489 NO-CATH --end-- VNG0535c one-of-top-five-correct: 0.447838706345096 CThresh: 5.436194 75 best_is: cluster17 VNG0535c cluster00 -> 1k8tA 7.1068021 498 / 95 conP: 0.024 NO-CATH VNG0535c cluster01 -> 1bu2A1 7.4277577 112 / 95 conP: 0.317 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG0535c cluster02 -> 1az902 7.8748136 266 / 95 conP: 0.145 CATH-ID: 3.90.230.10 Aminopeptidase p. Chain: null. Synonym: ampp. Biological_unit: homotet VNG0535c cluster03 -> 1blwC0 7.6828107 137 / 95 conP: 0.293 CATH-ID: 1.20.120.200 Erythropoietin receptor. Chain: a, b. Fragment: extracellular domains. VNG0535c cluster04 -> 1lre00 7.2674407 81 / 95 conP: 0.357 CATH-ID: 1.20.81.10 Receptor-associated protein. Chain: null. Fragment: n-terminal domain, VNG0535c cluster17 -> 1bgf00 9.0268308 124 / 95 conP: 0.402 CATH-ID: 1.10.532.10 Stat-4. Chain: null. Fragment: n-terminal domain. Engineered: yes. Bio --end-- VNG05401 one-of-top-five-correct: 0.39633618241264 CThresh: 3.579278 75 best_is: cluster09 VNG05401 cluster00 -> 1e5rA 5.6025348 260 / 67 conP: 0.049 NO-CATH VNG05401 cluster01 -> 1mroB2 5.8159671 295 / 67 conP: 0.037 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: VNG05401 cluster02 -> 1ceo00 6.4562639 332 / 67 conP: 0.030 CATH-ID: 3.20.20.80 Cellulase celc. Chain: null. Synonym: 1,4-beta-d-glucan-glucanohydrola VNG05401 cluster03 -> 1rdr02 6.1142307 94 / 67 conP: 0.254 CATH-ID: 3.30.70.620 Poliovirus 3d polymerase. Chain: null. Engineered: yes VNG05401 cluster04 -> 1fj7A0 5.6025348 101 / 67 conP: 0.215 CATH-ID: 3.30.70.330 Nucleolin rbd1. Chain: a. Synonym: protein c23. Engineered: yes VNG05401 cluster09 -> 1hy1A3 8.2436941 72 / 67 conP: 0.442 CATH-ID: 1.10.40.30 Delta crystallin ii. Chain: a, b, c, d. Synonym: delta-2-crystallin, a --end-- VNG05420 one-of-top-five-correct: 0.430222993477017 CThresh: 3.510239 75 best_is: cluster14 VNG05420 cluster00 -> 1fsz01 6.1294751 212 / 70 conP: 0.102 CATH-ID: 3.40.50.1440 Ftsz. Chain: null. Synonym: sulb. Engineered: yes VNG05420 cluster01 -> 1qorA2 6.1294751 146 / 70 conP: 0.180 CATH-ID: 3.40.50.720 Quinone oxidoreductase complexed with NADPH VNG05420 cluster02 -> 1qf6A5 6.4415647 102 / 70 conP: 0.272 CATH-ID: 3.40.50.800 Threonyl-tRNA synthetase. Chain: a. Synonym: thrrs. Threonine tRNA. Ch VNG05420 cluster03 -> 1dl5A 7.3932622 317 / 70 conP: 0.054 NO-CATH VNG05420 cluster04 -> 1fl2A2 5.5061781 94 / 70 conP: 0.236 CATH-ID: 3.40.50.2070 Alkyl hydroperoxide reductase subunit f. Chain: a. Fragment: c-termina VNG05420 cluster14 -> 1qf6A5 8.5268204 102 / 70 conP: 0.406 CATH-ID: 3.40.50.800 Threonyl-tRNA synthetase. Chain: a. Synonym: thrrs. Threonine tRNA. Ch --end-- VNG0543h one-of-top-five-correct: 0.132883318700286 CThresh: 9.978867 25 best_is: cluster09 VNG0543h cluster00 -> 1hcz02 4.3625845 59 / 131 conP: 0.127 CATH-ID: 2.40.50.100 Cytochrome f. Chain: null VNG0543h cluster01 -> 1ei5A3 5.5227944 102 / 131 conP: 0.139 CATH-ID: 2.40.128.50 D-aminopeptidase. Chain: a. Synonym: dap. Engineered: yes VNG0543h cluster02 -> 1gcyA2 4.9200819 56 / 131 conP: 0.148 CATH-ID: 2.60.40.1180 Glucan 1,4-alpha-maltotetrahydrolase. Chain: a. Engineered: yes VNG0543h cluster03 -> 1dlxA0 4.7638914 120 / 131 conP: 0.106 CATH-ID: 3.30.920.10 Frataxin. Chain: a. Fragment: c-terminal domain (91-130). Engineered: VNG0543h cluster04 -> 1qqnA3 4.4851250 89 / 131 conP: 0.114 CATH-ID: 3.30.420.50 D206s mutant of bovine 70 kilodalton heat shock protein. Chain: a. Fra VNG0543h cluster09 -> 1rypD0 5.7056605 241 / 131 conP: 0.075 CATH-ID: 3.60.20.10 20s proteasome. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, --end-- VNG0544h one-of-top-five-correct: 0.24317640911594 CThresh: 9.707276 25 best_is: cluster00 VNG0544h cluster00 -> 1jkw01 7.5409586 176 / 134 conP: 0.178 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y VNG0544h cluster01 -> 1fjhA0 5.7208100 236 / 134 conP: 0.086 CATH-ID: 3.40.50.720 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase. Chain: a, b. S VNG0544h cluster02 -> 1bucA3 5.8934040 141 / 134 conP: 0.139 CATH-ID: 1.20.140.10 Butyryl-coa dehydrogenase (bcad) (bacterial short-chain acyl-coa dehyd VNG0544h cluster03 -> 1ytfD1 5.9581160 53 / 134 conP: 0.207 CATH-ID: 1.20.15.160 Yeast tata-box binding protein. Chain: a. Fragment: c-terminal 180 ami VNG0544h cluster04 -> 1evyA 5.4617865 346 / 134 conP: 0.047 NO-CATH --end-- VNG0548c one-of-top-five-correct: 0.352784691710279 CThresh: 4.544190 75 best_is: cluster14 VNG0548c cluster00 -> 1chkA1 6.5800857 143 / 59 conP: 0.127 CATH-ID: 1.20.141.10 Chitosanase. Chain: a, b. Synonym: endochitosanase. Engineered: yes VNG0548c cluster01 -> 1e7aA1 4.3625845 103 / 59 conP: 0.110 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG0548c cluster02 -> 1b3uA0 5.2495850 588 / 59 conP: 0.001 CATH-ID: 1.25.30.30 Protein phosphatase pp2a. Chain: a, b. Fragment: 65 kd regulatory subu VNG0548c cluster03 -> 1d2nA2 5.4713351 67 / 59 conP: 0.206 CATH-ID: 1.10.8.60 N-ethylmaleimide-sensitive fusion protein. Chain: a. Fragment: d2. Eng VNG0548c cluster04 -> 1azsC2 6.0105778 115 / 59 conP: 0.147 CATH-ID: 1.10.400.10 Vc1. Chain: a. Fragment: c1a domain of adenylyl cyclase. Engineered: y VNG0548c cluster14 -> 1in4A 8.3540866 298 / 59 conP: 0.037 NO-CATH --end-- VNG05491 one-of-top-five-correct: 0.48011067507966 CThresh: 4.197572 75 best_is: cluster04 VNG05491 cluster00 -> 1ybvA0 6.8400102 270 / 119 conP: 0.221 CATH-ID: 3.40.50.720 Trihydroxynaphthalene reductase. Chain: a, b. Synonym: naphthol reduct VNG05491 cluster01 -> 1ab8A0 6.7951248 177 / 119 conP: 0.326 CATH-ID: 3.50.6.10 Adenylyl cyclase. Chain: a, b. Fragment: c2 domain. Engineered: yes. B VNG05491 cluster02 -> 1yrgA0 7.5278763 343 / 119 conP: 0.184 CATH-ID: 3.80.10.10 Gtpase-activating protein rna1_schpo. Chain: a, b. Synonym: rna1p. Ran VNG05491 cluster03 -> 1b4uB0 7.1985002 298 / 119 conP: 0.211 CATH-ID: 3.40.830.10 Protocatechuate 4,5-dioxygenase. Chain: a, b, c, d. Fragment: chain a, VNG05491 cluster04 -> 1i40A 8.2739700 175 / 119 conP: 0.429 NO-CATH --end-- VNG05622 one-of-top-five-correct: 0.367274827705112 CThresh: 6.759148 75 best_is: cluster11 VNG05622 cluster00 -> 1gai00 6.2874507 472 / 90 conP: 0.014 CATH-ID: 1.50.10.30 Glucoamylase-471. Chain: null. Fragment: residues 1-471. Synonym: gluc VNG05622 cluster01 -> 1ec5A0 5.9741910 48 / 90 conP: 0.255 CATH-ID: 1.20.15.30 Four-helix bundle model. Chain: a, b, c. Engineered: yes. Other_detail VNG05622 cluster02 -> 1kpsB 6.8730138 156 / 90 conP: 0.161 NO-CATH VNG05622 cluster03 -> 1jflA 5.5066999 228 / 90 conP: 0.069 NO-CATH VNG05622 cluster04 -> 1kpsB 7.0682014 156 / 90 conP: 0.169 NO-CATH VNG05622 cluster11 -> 1f9gA 8.8248907 721 / 90 conP: 0.004 NO-CATH --end-- VNG05631 one-of-top-five-correct: 0.260303807940774 CThresh: 3.556600 75 best_is: cluster01 VNG05631 cluster00 -> 1prcC2 6.5944764 156 / 54 conP: 0.113 CATH-ID: 1.10.468.10 Photosynthetic reaction center VNG05631 cluster01 -> 1eswA0 6.8221840 500 / 54 conP: 0.002 CATH-ID: 3.20.20.80 Amylomaltase. Chain: a. Engineered: yes VNG05631 cluster02 -> 1dn1A2 5.0005227 107 / 54 conP: 0.132 CATH-ID: 3.90.830.10 Syntaxin binding protein 1. Chain: a. Synonym: nsec1. Engineered: yes. VNG05631 cluster03 -> 1chkA2 5.2282304 95 / 54 conP: 0.159 CATH-ID: 3.30.386.10 Chitosanase. Chain: a, b. Synonym: endochitosanase. Engineered: yes VNG05631 cluster04 -> 1dxxA1 5.9113534 113 / 54 conP: 0.154 CATH-ID: 1.10.418.10 Dystrophin. Chain: a, b, c, d. Fragment: actin-binding. Engineered: ye --end-- VNG0565c one-of-top-five-correct: 0.389684162965149 CThresh: 8.591056 25 best_is: cluster12 VNG0565c cluster00 -> 1vcbB0 5.1941520 88 / 117 conP: 0.157 CATH-ID: 3.30.710.10 Elongin b. Chain: a, d, g, j. Fragment: residues 1-120. Engineered: ye VNG0565c cluster01 -> 1mla02 6.8391218 232 / 117 conP: 0.113 CATH-ID: 3.40.366.10 Malonyl-coenzyme a acyl carrier protein transacylase. Chain: null. Syn VNG0565c cluster02 -> 1ns1A0 6.8541389 73 / 117 conP: 0.248 CATH-ID: 1.10.287.10 Nonstructural protein 1. Chain: a, b. Fragment: RNA-binding domain, re VNG0565c cluster03 -> 1aca00 6.6283210 86 / 117 conP: 0.222 CATH-ID: 1.20.80.10 Acyl-coenzyme a binding protein (acbp) complex with palmitoyl-coenzyme VNG0565c cluster04 -> 1uaaA2 7.4376079 74 / 117 conP: 0.279 CATH-ID: 1.10.10.160 Atp-dependent DNA helicase rep. Chain: a, b. Engineered: yes. DNA (5'- VNG0565c cluster12 -> 1uaaA2 9.3017299 74 / 117 conP: 0.399 CATH-ID: 1.10.10.160 Atp-dependent DNA helicase rep. Chain: a, b. Engineered: yes. DNA (5'- --end-- VNG0568c one-of-top-five-correct: 0.347872141147301 CThresh: 4.185519 75 best_is: cluster01 VNG0568c cluster00 -> 1tplA2 5.2495850 244 / 59 conP: 0.031 CATH-ID: 3.40.640.10 Tyrosine phenol-lyase VNG0568c cluster01 -> 1fchA0 8.1323365 302 / 59 conP: 0.036 CATH-ID: 1.25.40.140 Peroxisomal targeting signal 1 receptor. Chain: a, b. Fragment: c-term VNG0568c cluster02 -> 1bg602 7.2453360 146 / 59 conP: 0.156 CATH-ID: 1.10.1040.10 N-(1-d-carboxylethyl)-l-norvaline dehydrogenase. Chain: null. Engineer VNG0568c cluster03 -> 1rnl02 6.5800857 76 / 59 conP: 0.259 CATH-ID: 1.10.10.60 Nitrate/nitrite response regulator protein narl. Chain: null. Fragment VNG0568c cluster04 -> 1fjgT0 7.9825841 99 / 59 conP: 0.285 CATH-TRUNC --end-- VNG0570h one-of-top-five-correct: 0.135120261489858 CThresh: 2.396329 100 best_is: cluster00 VNG0570h cluster00 -> 1ad3A2 4.5284006 195 / 34 conP: 0.011 CATH-ID: 3.40.309.10 Aldehyde dehydrogenase (class 3). Chain: a, b. Synonym: aldh. Engineer VNG0570h cluster01 -> 1dcqA0 4.2673726 276 / 34 conP: 0.002 CATH-ID: 1.25.40.50 Pyk2-associated protein beta. Chain: a. Fragment: arf-gap domain. Engi VNG0570h cluster02 -> 1bi2B1 3.5675125 73 / 34 conP: 0.092 CATH-ID: 1.10.10.10 Diphtheria toxin repressor. Chain: a, b. Synonym: dtxr. Engineered: ye VNG0570h cluster03 -> 1k8tA 4.5284006 498 / 34 conP: 0.000 NO-CATH VNG0570h cluster04 -> 1b37A1 4.5284006 239 / 34 conP: 0.004 CATH-ID: 3.50.50.60 Polyamine oxidase. Chain: a, b, c. Fragment: fad-binding domain. Ec: 1 --end-- VNG05710 one-of-top-five-correct: 0.364594773479494 CThresh: 6.765574 75 best_is: cluster03 VNG05710 cluster00 -> 1k3fA 6.4203465 253 / 111 conP: 0.117 NO-CATH VNG05710 cluster01 -> 2trcP1 6.2951335 131 / 111 conP: 0.216 CATH-ID: 3.40.30.10 Transducin. Chain: b, g. Fragment: lys-c resistant fragment, the gamma VNG05710 cluster02 -> 1ez3A0 6.5760343 124 / 111 conP: 0.238 CATH-ID: 1.20.1040.20 Syntaxin-1a. Chain: a, b, c. Fragment: n-terminal domain. Synonym: syn VNG05710 cluster03 -> 1es8A0 8.3180059 192 / 111 conP: 0.252 CATH-ID: 3.40.91.20 Restriction endonuclease bglii. Chain: a. Engineered: yes VNG05710 cluster04 -> 1mnmA 5.6763668 85 / 111 conP: 0.236 NO-CATH --end-- VNG05711 one-of-top-five-correct: 0.469550285149627 CThresh: 4.510721 75 best_is: cluster02 VNG05711 cluster00 -> 1dq3A3 7.3700772 87 / 105 conP: 0.434 CATH-ID: 3.10.28.10 Endonuclease. Chain: a. Engineered: yes VNG05711 cluster01 -> 1reqB1 5.8924623 437 / 105 conP: 0.046 CATH-ID: 3.20.20.240 Methylmalonyl-coa mutase. Chain: a, b, c, d. Engineered: yes. Other_de VNG05711 cluster02 -> 1qupA1 8.6188349 68 / 105 conP: 0.556 CATH-ID: 3.30.70.100 Superoxide dismutase 1 copper chaperone. Chain: a, b. Engineered: yes VNG05711 cluster03 -> 1b4bA0 6.8207014 71 / 105 conP: 0.422 CATH-ID: 3.30.70.220 Arginine repressor. Chain: a, b, c. Fragment: oligomerization domain, VNG05711 cluster04 -> 1dorA1 6.9691776 267 / 105 conP: 0.171 CATH-ID: 3.20.20.90 Dihydroorotate dehydrogenase a. Chain: a, b. Biological_unit: homodime --end-- VNG05730 one-of-top-five-correct: 0.241341237798595 CThresh: 6.997266 65 best_is: cluster15 VNG05730 cluster00 -> 1mrp01 4.9014269 156 / 88 conP: 0.090 CATH-ID: 3.40.190.10 Ferric iron binding protein. Chain: null. Synonym: fbp, hita, hfbp, ma VNG05730 cluster01 -> 1ecl02 5.7570212 166 / 88 conP: 0.105 CATH-ID: 1.10.460.10 Escherichia coli topoisomerase i. Domain: amino-terminal 67kda. Synony VNG05730 cluster02 -> 1jilA 5.0301100 323 / 88 conP: 0.026 NO-CATH VNG05730 cluster03 -> 1ffyA3 5.1674443 254 / 88 conP: 0.047 CATH-ID: 1.10.730.10 Isoleucyl-tRNA synthetase. Chain: a. Synonym: isoleucine--tRNA ligase, VNG05730 cluster04 -> 1ef4A0 4.3772538 55 / 88 conP: 0.160 CATH-ID: 1.10.10.60 DNA-directed RNA polymerase. Chain: a. Fragment: subunit rpb10. Synony VNG05730 cluster15 -> 1ytfD1 7.3320112 53 / 88 conP: 0.311 CATH-ID: 1.20.15.160 Yeast tata-box binding protein. Chain: a. Fragment: c-terminal 180 ami --end-- VNG0574c one-of-top-five-correct: 0.386252209967736 CThresh: 6.001786 75 best_is: cluster01 VNG0574c cluster00 -> 2cyp01 8.0648907 170 / 84 conP: 0.201 CATH-ID: 1.10.520.10 Cytochrome c peroxidase (ferrocytochrome c (colon) h2 O2 reductase) VNG0574c cluster01 -> 1flp00 8.8393247 142 / 84 conP: 0.284 CATH-ID: 1.10.490.10 Hemoglobin i (monomeric) (ferric) VNG0574c cluster02 -> 1ezfA 7.1716524 323 / 84 conP: 0.052 NO-CATH VNG0574c cluster03 -> 1guxB0 8.0648907 141 / 84 conP: 0.243 CATH-ID: 1.10.472.10 Retinoblastoma protein. Chain: a, b. Fragment: pocket domain. Engineer VNG0574c cluster04 -> 2yhx_ 6.9739864 457 / 84 conP: 0.017 NO-CATH --end-- VNG05750 one-of-top-five-correct: 0.398250807189681 CThresh: 4.593096 75 best_is: cluster14 VNG05750 cluster00 -> 1h6pA 6.3401063 188 / 70 conP: 0.107 NO-CATH VNG05750 cluster01 -> 1tfe01 6.9719998 97 / 70 conP: 0.264 CATH-ID: 3.30.479.20 Elongation factor ts. Chain: null. Fragment: ef-ts dimerization domain VNG05750 cluster02 -> 2tpt01 7.2756669 107 / 70 conP: 0.262 CATH-ID: 1.20.970.10 Thymidine phosphorylase. Chain: null. Biological_unit: dimer. Other_de VNG05750 cluster03 -> 2tpt01 6.9510503 107 / 70 conP: 0.244 CATH-ID: 1.20.970.10 Thymidine phosphorylase. Chain: null. Biological_unit: dimer. Other_de VNG05750 cluster04 -> 1ec5A0 6.9175592 48 / 70 conP: 0.366 CATH-ID: 1.20.15.30 Four-helix bundle model. Chain: a, b, c. Engineered: yes. Other_detail VNG05750 cluster14 -> 1e7aA3 8.6570492 92 / 70 conP: 0.380 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes --end-- VNG05751 one-of-top-five-correct: 0.308058767618997 CThresh: 7.852848 25 best_is: cluster00 VNG05751 cluster00 -> 1moq01 8.2303354 218 / 106 conP: 0.165 CATH-ID: 3.40.50.1940 Glucosamine 6-phosphate synthase. Chain: null. Synonym: l-glutamine\:d VNG05751 cluster01 -> 1hf2A 5.4024586 196 / 106 conP: 0.092 NO-CATH VNG05751 cluster02 -> 1dtwA0 5.2421294 382 / 106 conP: 0.027 CATH-ID: 3.40.50.970 Branched-chain alpha-keto acid dehydrogenase alpha subunit. Chain: a. VNG05751 cluster03 -> 1k3fA 6.5407656 253 / 106 conP: 0.088 NO-CATH VNG05751 cluster04 -> 1ccwB1 5.3116931 417 / 106 conP: 0.022 CATH-ID: 3.20.20.290 Glutamate mutase. Chain: a, c. Fragment: b12-binding subunit. Synonym: --end-- VNG0576c one-of-top-five-correct: 0.181599572374071 CThresh: 8.864663 25 best_is: cluster03 VNG0576c cluster00 -> 1erjA0 4.5850020 350 / 125 conP: 0.036 CATH-ID: 2.130.10.20 Transcriptional repressor tup1. Chain: a, b, c. Fragment: c-terminal w VNG0576c cluster01 -> 1fi2A0 4.9381344 201 / 125 conP: 0.086 CATH-ID: 2.60.120.10 Oxalate oxidase. Chain: a. Synonym: germin. Ec: 1.2.3.4 VNG0576c cluster02 -> 1jacA0 4.4883501 133 / 125 conP: 0.108 CATH-ID: 2.100.10.30 Jacalin. Chain: a, b, c, d, e, f, g, h. Synonym: jackfruit agglutinin. VNG0576c cluster03 -> 1ei5A2 6.3503005 82 / 125 conP: 0.217 CATH-ID: 2.40.128.50 D-aminopeptidase. Chain: a. Synonym: dap. Engineered: yes VNG0576c cluster04 -> 1dm0A 4.7580695 264 / 125 conP: 0.059 NO-CATH --end-- VNG0579h one-of-top-five-correct: 0.225382048721105 CThresh: 6.292433 75 best_is: cluster01 VNG0579h cluster00 -> 1poc00 5.8428570 134 / 85 conP: 0.146 CATH-ID: 1.20.90.10 Phospholipase a2 complex with the transition-state analogue VNG0579h cluster01 -> 1bjaA0 6.8363931 95 / 85 conP: 0.239 CATH-ID: 1.10.10.10 Transcription regulatory protein mota. Chain: a, b. Fragment: n-termin VNG0579h cluster02 -> 1qjtA0 6.2766107 99 / 85 conP: 0.205 CATH-ID: 1.10.238.10 Epidermal growth factor receptor substrate substrate 15, eps15. Chain: VNG0579h cluster03 -> 1dofA 6.4686599 385 / 85 conP: 0.025 NO-CATH VNG0579h cluster04 -> 1cpt00 6.6372854 412 / 85 conP: 0.021 CATH-ID: 1.10.630.10 Cytochrome p450-terp --end-- VNG0581h one-of-top-five-correct: 0.32322325867307 CThresh: 6.862871 75 best_is: cluster18 VNG0581h cluster00 -> 1jkw02 5.6000737 101 / 94 conP: 0.175 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y VNG0581h cluster01 -> 1a0b00 6.4794084 117 / 94 conP: 0.195 CATH-ID: 1.20.120.160 Aerobic respiration control sensor protein arcb. Chain: null. Fragment VNG0581h cluster02 -> 1evyA 6.9446266 346 / 94 conP: 0.048 NO-CATH VNG0581h cluster03 -> 1a36A5 6.0573320 72 / 94 conP: 0.231 CATH-ID: 1.20.15.30 Topoisomerase i. Chain: a. Fragment: core domain and c-terminal domain VNG0581h cluster04 -> 1mhdA0 5.9709422 123 / 94 conP: 0.167 CATH-ID: 3.90.520.10 Smad3. Chain: a, b. Fragment: mh1 domain, residues 1 - 144. Synonym: s VNG0581h cluster18 -> 1rpo00 8.2468258 61 / 94 conP: 0.380 CATH-ID: 1.20.15.200 Rop (cole1 repressor of primer) mutant with ala inserted on either sid --end-- VNG0585h one-of-top-five-correct: 0.595013312575488 CThresh: 7.704043 25 best_is: cluster04 VNG0585h cluster00 -> 1grj01 8.4732312 74 / 127 conP: 0.415 CATH-ID: 1.20.15.150 Grea transcript cleavage factor from escherichia coli VNG0585h cluster01 -> 1f02T0 7.7828909 66 / 127 conP: 0.378 CATH-ID: 4.10.820.10 Intimin. Chain: i. Fragment: c-terminal domain (282 residues). Enginee VNG0585h cluster02 -> 1ytfD1 7.1030287 53 / 127 conP: 0.349 CATH-ID: 1.20.15.160 Yeast tata-box binding protein. Chain: a. Fragment: c-terminal 180 ami VNG0585h cluster03 -> 2lisA0 5.8064981 131 / 127 conP: 0.193 CATH-ID: 1.20.150.10 Sperm lysin. Chain: a VNG0585h cluster04 -> 1ez3A0 10.953157 124 / 127 conP: 0.524 CATH-ID: 1.20.1040.20 Syntaxin-1a. Chain: a, b, c. Fragment: n-terminal domain. Synonym: syn --end-- VNG05860 one-of-top-five-correct: 0.268370772417479 CThresh: 3.507079 75 best_is: cluster02 VNG05860 cluster00 -> 1asu00 6.7499816 162 / 51 conP: 0.097 CATH-ID: 3.30.420.10 Avian sarcoma virus integrase. Chain: null. Domain: catalytic core dom VNG05860 cluster01 -> 1d0nA3 6.3658409 121 / 51 conP: 0.145 CATH-ID: 3.40.20.10 Horse plasma gelsolin. Chain: a, b VNG05860 cluster02 -> 1asu00 6.9816067 162 / 51 conP: 0.103 CATH-ID: 3.30.420.10 Avian sarcoma virus integrase. Chain: null. Domain: catalytic core dom VNG05860 cluster03 -> 1asu00 6.5183565 162 / 51 conP: 0.092 CATH-ID: 3.30.420.10 Avian sarcoma virus integrase. Chain: null. Domain: catalytic core dom VNG05860 cluster04 -> 1alo05 6.5183565 93 / 51 conP: 0.206 CATH-ID: 3.30.176.10 Aldehyde oxidoreductase. Chain: null. Synonym: molybdenum iron sulfur --end-- VNG05911 one-of-top-five-correct: 0.501889530978895 CThresh: 2.970218 100 best_is: cluster07 VNG05911 cluster00 -> 4crxA2 6.2840991 111 / 63 conP: 0.237 CATH-ID: 1.10.150.130 Cre recombinase. Chain: a, b. Engineered: yes. Mutation: r173k. Biolog VNG05911 cluster01 -> 1abv00 7.9265474 105 / 63 conP: 0.348 CATH-ID: 1.10.520.20 Delta subunit of the f1f0-atp synthase. Chain: null. Fragment: n-termi VNG05911 cluster02 -> 1ezfA 7.2742744 323 / 63 conP: 0.038 NO-CATH VNG05911 cluster03 -> 1aw500 6.8394257 321 / 63 conP: 0.034 CATH-ID: 3.20.20.230 5-aminolevulinate dehydratase. Chain: null. Synonym: porphobilinogen s VNG05911 cluster04 -> 2dpmA1 6.6220014 155 / 63 conP: 0.174 CATH-ID: 3.40.50.150 Adenine-specific methyltransferase dpnii 1. Chain: a. Synonym: m.Dpnii VNG05911 cluster07 -> 1chuA3 9.2310934 102 / 63 conP: 0.446 CATH-ID: 1.20.1040.60 L-aspartate oxidase. Chain: a. Engineered: yes. Biological_unit: homod --end-- VNG0594h one-of-top-five-correct: 0.493860207778469 CThresh: 6.890139 41 best_is: cluster11 VNG0594h cluster00 -> 1qu6A1 5.4456427 85 / 107 conP: 0.211 CATH-ID: 3.30.160.20 Protein kinase pkr. Chain: a. Fragment: dsrna-binding n-terminal domai VNG0594h cluster01 -> 1qstA0 7.0723493 160 / 107 conP: 0.207 CATH-ID: 3.40.630.30 Tgcn5 histone acetyl transferase. Chain: a. Engineered: yes. Biologica VNG0594h cluster02 -> 2pgd01 7.0679906 180 / 107 conP: 0.187 CATH-ID: 3.40.50.720 6-phosphogluconate dehydrogenase (6-pgdh) VNG0594h cluster03 -> 1gca01 6.7000706 148 / 107 conP: 0.203 CATH-ID: 3.40.50.3300 Glucose/galactose-binding protein complex with galactose VNG0594h cluster04 -> 1f89A 5.2862845 271 / 107 conP: 0.070 NO-CATH VNG0594h cluster11 -> 1i72A 9.9189944 251 / 107 conP: 0.247 NO-CATH --end-- VNG0596h one-of-top-five-correct: 0.232164247068454 CThresh: 3.205039 75 best_is: cluster17 VNG0596h cluster00 -> 1dv8A0 4.4744651 128 / 50 conP: 0.084 CATH-ID: 3.10.100.10 Asialoglycoprotein receptor 1. Chain: a. Fragment: carbohydrate recogn VNG0596h cluster01 -> 2vik00 4.4744651 126 / 50 conP: 0.086 CATH-ID: 3.40.20.10 Villin 14t. Chain: null. Fragment: residues 1 - 126. Synonym: villin d VNG0596h cluster02 -> 1dv8A0 4.0084740 128 / 50 conP: 0.074 CATH-ID: 3.10.100.10 Asialoglycoprotein receptor 1. Chain: a. Fragment: carbohydrate recogn VNG0596h cluster03 -> 1hw5A2 3.5403010 68 / 50 conP: 0.140 CATH-ID: 1.10.10.10 Catabolite gene activator. Chain: a, b. Synonym: camp receptor protein VNG0596h cluster04 -> 1mwpA0 5.7184226 96 / 50 conP: 0.170 CATH-ID: 3.90.570.10 Amyloid a4 protein. Chain: a. Fragment: heparin binding domain. Engine VNG0596h cluster17 -> 1et0A1 6.3384296 108 / 50 conP: 0.172 CATH-ID: 3.30.470.10 4-amino-4-deoxychorismate lyase. Chain: a. Synonym: adc lyase. Enginee --end-- VNG0597h one-of-top-five-correct: 0.270896392795279 CThresh: 8.341102 25 best_is: cluster00 VNG0597h cluster00 -> 5eat02 7.3645934 371 / 132 conP: 0.088 CATH-ID: 1.10.615.10 5-epi-aristolochene synthase. Chain: null. Synonym: 5-epi-aristolochen VNG0597h cluster01 -> 1qqcA4 6.2586237 138 / 132 conP: 0.195 CATH-ID: 3.90.710.10 DNA polymerase ii. Chain: a. Engineered: yes. Biological_unit: monomer VNG0597h cluster02 -> 1ec5A0 5.0308228 48 / 132 conP: 0.215 CATH-ID: 1.20.15.30 Four-helix bundle model. Chain: a, b, c. Engineered: yes. Other_detail VNG0597h cluster03 -> 1r2fA0 4.4716182 283 / 132 conP: 0.063 CATH-ID: 1.10.620.20 Ribonucleotide reductase r2. Chain: a, b. Engineered: yes VNG0597h cluster04 -> 1qmgA2 5.8607610 293 / 132 conP: 0.087 CATH-ID: 1.10.572.10 Acetohydroxy-acid isomeroreductase. Chain: a, b, c, d. Synonym: keto-a --end-- VNG05980 one-of-top-five-correct: 0.542968534365084 CThresh: 4.279553 75 best_is: cluster16 VNG05980 cluster00 -> 1eno00 9.1377617 297 / 87 conP: 0.163 CATH-ID: 3.40.50.720 Enoyl acyl carrier protein reductase. Chain: null. Engineered: yes. Mu VNG05980 cluster01 -> 1cbzA1 5.7046244 315 / 87 conP: 0.059 CATH-ID: 3.40.605.10 Aldehyde dehydrogenase. Chain: a, b, c, d. Synonym: aldh. Engineered: VNG05980 cluster02 -> 1dfmA0 7.3700772 218 / 87 conP: 0.181 CATH-ID: 3.40.91.20 Endonuclease bglii. Chain: a, b. Fragment: bglii. Engineered: yes. Mut VNG05980 cluster03 -> 1fiy02 9.5321802 374 / 87 conP: 0.105 CATH-ID: 3.20.20.60 Phosphoenolpyruvate carboxylase. Chain: null. Synonym: pepc. Engineere VNG05980 cluster04 -> 1seiA1 6.3869696 72 / 87 conP: 0.351 CATH-ID: 3.30.70.350 Ribosomal protein s8. Chain: a, b. Engineered: yes VNG05980 cluster16 -> 1eg7A 9.7293895 549 / 87 conP: 0.030 NO-CATH --end-- VNG0599c one-of-top-five-correct: 0.51106774095336 CThresh: 3.144965 75 best_is: cluster02 VNG0599c cluster00 -> 1ash00 6.5761849 147 / 92 conP: 0.308 CATH-ID: 1.10.490.10 Hemoglobin (domain one) VNG0599c cluster01 -> 1ihgA 7.9749759 364 / 92 conP: 0.113 NO-CATH VNG0599c cluster02 -> 1ihgA 8.7505248 364 / 92 conP: 0.138 NO-CATH VNG0599c cluster03 -> 1jmsA 7.3933143 360 / 92 conP: 0.100 NO-CATH VNG0599c cluster04 -> 1mroA3 7.0055398 227 / 92 conP: 0.215 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: --end-- VNG06001 one-of-top-five-correct: 0.497013949233272 CThresh: 3.094857 75 best_is: cluster07 VNG06001 cluster00 -> 2bce00 5.7343046 532 / 79 conP: 0.009 CATH-ID: 3.40.50.950 Cholesterol esterase. Chain: null. Synonym: bile salt activated lipase VNG06001 cluster01 -> 1chkA1 7.8545729 143 / 79 conP: 0.339 CATH-ID: 1.20.141.10 Chitosanase. Chain: a, b. Synonym: endochitosanase. Engineered: yes VNG06001 cluster02 -> 1k5hA 7.0423091 398 / 79 conP: 0.041 NO-CATH VNG06001 cluster03 -> 1fz1F2 7.2509063 73 / 79 conP: 0.445 CATH-ID: 1.20.88.10 Methane monooxygenase component a, alpha chain. Chain: a, b. Synonym: VNG06001 cluster04 -> 1bu2A1 7.5457409 112 / 79 conP: 0.382 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG06001 cluster07 -> 1lxl00 8.8699028 221 / 79 conP: 0.256 CATH-ID: 1.10.437.10 Bcl-xl. Chain: null. Synonym: apoptosis regulator bcl-x. Engineered: y --end-- VNG0601h one-of-top-five-correct: 0.637707144401208 CThresh: 4.087274 75 best_is: cluster08 VNG0601h cluster00 -> 1e7aA4 5.2670955 86 / 79 conP: 0.244 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG0601h cluster01 -> 1dioA 9.0729687 551 / 79 conP: 0.015 NO-CATH VNG0601h cluster02 -> 1ede00 9.4791006 310 / 79 conP: 0.130 CATH-ID: 3.40.50.950 Haloalkane dehalogenase at ph 8.2 VNG0601h cluster03 -> 1d2zA0 7.0423091 102 / 79 conP: 0.318 CATH-ID: 1.10.533.10 Death domain of pelle. Chain: a, c. Engineered: yes. Death domain of t VNG0601h cluster04 -> 1el6A3 5.8437457 109 / 79 conP: 0.237 CATH-ID: 3.30.70.570 Baseplate structural protein gp11. Chain: a, b, c. Engineered: yes VNG0601h cluster08 -> 1dorA1 10.900562 267 / 79 conP: 0.247 CATH-ID: 3.20.20.90 Dihydroorotate dehydrogenase a. Chain: a, b. Biological_unit: homodime --end-- VNG0604h one-of-top-five-correct: 0.592276969199412 CThresh: 5.433597 75 best_is: cluster16 VNG0604h cluster00 -> 1mtyD0 8.1688631 512 / 92 conP: 0.025 CATH-ID: 1.10.620.20 Methane monooxygenase hydroxylase. Chain: d, e, b, c, g, h. Biological VNG0604h cluster01 -> 1a9100 8.0878221 79 / 92 conP: 0.407 CATH-ID: 1.20.20.10 F1fo atpase subunit c. Chain: null. Synonym: proteolipid, dccd-binding VNG0604h cluster02 -> 1au1A0 7.1994270 166 / 92 conP: 0.215 CATH-ID: 1.20.120.210 Interferon-beta. Chain: a, b. Engineered: yes VNG0604h cluster03 -> 2occC2 7.1994270 191 / 92 conP: 0.185 CATH-ID: 1.20.120.80 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, VNG0604h cluster04 -> 1ec5A0 7.1534013 48 / 92 conP: 0.399 CATH-ID: 1.20.15.30 Four-helix bundle model. Chain: a, b, c. Engineered: yes. Other_detail VNG0604h cluster16 -> 2occC2 10.689397 191 / 92 conP: 0.383 CATH-ID: 1.20.120.80 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, --end-- VNG0608c one-of-top-five-correct: 0.689610034743336 CThresh: 6.998707 66 best_is: cluster18 VNG0608c cluster00 -> 2dri02 11.395922 146 / 136 conP: 0.593 CATH-ID: 3.40.50.2400 D-ribose-binding protein complexed with beta-d-ribose VNG0608c cluster01 -> 1onrA0 7.2703323 316 / 136 conP: 0.156 CATH-ID: 3.20.20.70 Transaldolase b. Chain: a, b. Engineered: yes VNG0608c cluster02 -> 1d9eA0 8.9890277 266 / 136 conP: 0.281 CATH-ID: 3.20.20.280 3-deoxy-d-manno-octulosonate 8-phosphate synthase. Chain: a, b, c, d. VNG0608c cluster03 -> 1hvxA 8.7195079 483 / 136 conP: 0.106 NO-CATH VNG0608c cluster04 -> 1reqA2 9.3187243 164 / 136 conP: 0.421 CATH-ID: 3.40.50.280 Methylmalonyl-coa mutase. Chain: a, b, c, d. Engineered: yes. Other_de VNG0608c cluster18 -> 1a04A1 11.560512 124 / 136 conP: 0.631 CATH-ID: 3.40.50.3000 Nitrate/nitrite response regulator protein narl. Chain: a, b. Fragment --end-- VNG0612h one-of-top-five-correct: 0.369082032102747 CThresh: 3.236712 75 best_is: cluster14 VNG0612h cluster00 -> 1tgoA2 6.4045771 196 / 63 conP: 0.105 CATH-ID: 3.30.420.10 Thermostable b DNA polymerase. Chain: a. Engineered: yes VNG0612h cluster01 -> 1tgoA2 7.0568501 196 / 63 conP: 0.125 CATH-ID: 3.30.420.10 Thermostable b DNA polymerase. Chain: a. Engineered: yes VNG0612h cluster02 -> 2tpt01 7.2742744 107 / 63 conP: 0.289 CATH-ID: 1.20.970.10 Thymidine phosphorylase. Chain: null. Biological_unit: dimer. Other_de VNG0612h cluster03 -> 1aa7A2 7.7091231 78 / 63 conP: 0.389 CATH-ID: 1.10.10.180 Influenza virus matrix protein. Chain: a, b. Biological_unit: dimer VNG0612h cluster04 -> 1b4uA0 6.4045771 132 / 63 conP: 0.194 CATH-ID: 1.10.700.10 Protocatechuate 4,5-dioxygenase. Chain: a, b, c, d. Fragment: chain a, VNG0612h cluster14 -> 1ocrE0 7.8634976 109 / 63 conP: 0.321 CATH-ID: 1.25.40.40 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, --end-- VNG06152 one-of-top-five-correct: 0.299545286802034 CThresh: 5.084438 75 best_is: cluster06 VNG06152 cluster00 -> 2hgf00 5.3231093 97 / 77 conP: 0.186 CATH-ID: 3.50.4.10 Hepatocyte growth factor. Chain: null. Fragment: amino terminal domain VNG06152 cluster01 -> 1jqlA 6.0924333 366 / 77 conP: 0.024 NO-CATH VNG06152 cluster02 -> 1wit00 5.4784859 93 / 77 conP: 0.199 CATH-ID: 2.60.40.10 Twitchin 18th igsf module. Chain: null. Engineered: yes VNG06152 cluster03 -> 1i8iA 5.8877842 106 / 77 conP: 0.199 NO-CATH VNG06152 cluster04 -> 1atiA1 6.6062896 306 / 77 conP: 0.047 CATH-ID: 3.40.690.10 Glycyl-tRNA synthetase. Chain: a, b. Synonym: glycine-tRNA ligase. Oth VNG06152 cluster06 -> 1pea02 7.5249773 176 / 77 conP: 0.174 CATH-ID: 3.40.50.3800 Amidase operon. Chain: null. Fragment: amide receptor/negative regulat --end-- VNG06201 one-of-top-five-correct: 0.0393263971453918 CThresh: 4.110780 75 best_is: --end-- VNG0624h one-of-top-five-correct: 0.375501172031109 CThresh: 7.343503 25 best_is: cluster15 VNG0624h cluster00 -> 1cii03 5.9413983 157 / 108 conP: 0.150 CATH-ID: 1.10.490.30 Colicin ia. Chain: null. Engineered: yes. Biological_unit: monomer VNG0624h cluster01 -> 1bcfA0 6.0069190 158 / 108 conP: 0.152 CATH-ID: 1.20.120.190 Bacterioferritin (cytochrome b1) VNG0624h cluster02 -> 1ifa_ 5.7434997 158 / 108 conP: 0.142 NO-CATH VNG0624h cluster03 -> 1vin02 5.7566277 113 / 108 conP: 0.182 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O VNG0624h cluster04 -> 1qazA0 7.6583914 351 / 108 conP: 0.076 CATH-ID: 1.50.40.20 Alginate lyase a1-iii. Chain: a. Engineered: yes. Biological_unit: mon VNG0624h cluster15 -> 1jzsA 8.7765005 821 / 108 conP: 0.005 NO-CATH --end-- VNG06271 one-of-top-five-correct: 0.429166348695442 CThresh: 2.792495 100 best_is: cluster04 VNG06271 cluster00 -> 1ayx00 7.3932622 492 / 70 conP: 0.012 CATH-ID: 1.50.10.30 Glucoamylase. Chain: null. Engineered: yes VNG06271 cluster01 -> 1c3uA3 6.1254090 82 / 70 conP: 0.329 CATH-ID: 1.10.164.30 Adenylosuccinate lyase. Chain: a, b. Engineered: yes VNG06271 cluster02 -> 1bo1A1 6.5507375 166 / 70 conP: 0.193 CATH-ID: 3.30.800.10 Phosphatidylinositol phosphate kinase iibeta. Chain: a, b. Synonym: pi VNG06271 cluster03 -> 1pjr02 7.2429142 72 / 70 conP: 0.428 CATH-ID: 1.10.10.160 Pcra. Chain: null. Engineered: yes VNG06271 cluster04 -> 1g71A 8.1895121 344 / 70 conP: 0.061 NO-CATH --end-- VNG06360 one-of-top-five-correct: 0.204833038559477 CThresh: 6.966165 32 best_is: cluster18 VNG06360 cluster00 -> 1qckA0 5.6443591 89 / 91 conP: 0.180 CATH-ID: 1.10.150.40 Barrier-to-autointegration factor. Chain: a, b. Engineered: yes VNG06360 cluster01 -> 1cc8A0 6.0573320 72 / 91 conP: 0.220 CATH-ID: 3.30.70.100 Metallochaperone atx1. Chain: a. Engineered: yes VNG06360 cluster02 -> 1sbp02 4.5077193 158 / 91 conP: 0.085 CATH-ID: 3.40.190.10 Sulfate-binding protein VNG06360 cluster03 -> 1jli00 5.4460356 112 / 91 conP: 0.148 CATH-ID: 1.20.120.200 Interleukin 3. Chain: null. Synonym: multi-csf. Engineered: yes. Mutat VNG06360 cluster04 -> 3rubL1 5.0913179 122 / 91 conP: 0.127 CATH-ID: 3.30.70.150 Ribulose 1,5-bisphosphate carboxylase(slash)oxygenase (form III ) VNG06360 cluster18 -> 1sbp02 6.6719242 158 / 91 conP: 0.148 CATH-ID: 3.40.190.10 Sulfate-binding protein --end-- VNG06370 one-of-top-five-correct: 0.342642571917473 CThresh: 6.585631 75 best_is: cluster09 VNG06370 cluster00 -> 1iawA 6.3512883 304 / 97 conP: 0.063 NO-CATH VNG06370 cluster01 -> 1jud02 7.8104132 75 / 97 conP: 0.350 CATH-ID: 1.10.164.10 L-2-haloacid dehalogenase. Chain: null. Engineered: yes VNG06370 cluster02 -> 1pprM1 8.1108969 155 / 97 conP: 0.248 CATH-ID: 1.40.10.10 Peridinin-chlorophyll protein. Chain: m, n, o. Synonym: pcp VNG06370 cluster03 -> 1e68A0 6.4415647 70 / 97 conP: 0.273 CATH-ID: 1.20.225.10 Bacteriocin as-48. Chain: a. Fragment: bacteriocin as-48 residue 36-10 VNG06370 cluster04 -> 1fnnA3 6.1789345 104 / 97 conP: 0.214 CATH-ID: 1.10.10.10 Cell division control protein 6. Chain: a, b. Synonym: cdc6p. Engineer VNG06370 cluster09 -> 1jkw01 8.2922053 176 / 97 conP: 0.229 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y --end-- VNG06371 one-of-top-five-correct: 0.193422370879532 CThresh: 5.894286 75 best_is: cluster14 VNG06371 cluster00 -> 1qr4A1 5.5096109 87 / 76 conP: 0.178 CATH-ID: 2.60.40.30 Tenascin. Chain: a, b. Fragment: fniii domains 5-6. Engineered: yes VNG06371 cluster01 -> 1dr9A1 4.3926488 105 / 76 conP: 0.117 CATH-ID: 2.60.40.10 T lymphocyte activation antigen. Chain: a. Fragment: extracellular reg VNG06371 cluster02 -> 1bp3B2 5.5096109 103 / 76 conP: 0.157 CATH-ID: 2.60.40.30 Growth hormone. Chain: a. Engineered: yes. Mutation: yes. Prolactin re VNG06371 cluster03 -> 1lcl00 4.2768481 141 / 76 conP: 0.084 CATH-ID: 2.60.120.60 Lysophospholipase. Chain: null. Synonym: charcot-leyden crystal protei VNG06371 cluster04 -> 2sli02 4.8932295 383 / 76 conP: 0.012 CATH-ID: 2.120.10.10 Intramolecular trans-sialidase. Chain: null. Fragment: devoid of n-ter VNG06371 cluster14 -> 1jpsH 6.3314528 213 / 76 conP: 0.079 NO-CATH --end-- VNG06460 one-of-top-five-correct: 0.515299791058309 CThresh: 3.052378 75 best_is: cluster09 VNG06460 cluster00 -> 1tys00 8.7270750 264 / 64 conP: 0.106 CATH-ID: 3.30.572.10 Thymidylate synthase mutant with cys 146 replaced by ser (c146s) VNG06460 cluster01 -> 1jkxA 7.6613066 209 / 64 conP: 0.138 NO-CATH VNG06460 cluster02 -> 1fmtA1 7.2285129 202 / 64 conP: 0.132 CATH-ID: 3.40.50.170 Methionyl-tRNA fmet formyltransferase. Chain: a, b. Synonym: 10-formyl VNG06460 cluster03 -> 1a6f00 6.3629255 113 / 64 conP: 0.239 CATH-ID: 3.30.230.10 Ribonuclease p protein. Chain: null. Synonym: rnase p protein. Enginee VNG06460 cluster04 -> 1crkA2 6.5793224 279 / 64 conP: 0.052 CATH-ID: 3.30.590.10 Creatine kinase. Chain: a, b, c, d. Biological_unit: octamer VNG06460 cluster09 -> 1b5dA0 9.3924813 246 / 64 conP: 0.149 CATH-ID: 3.30.572.10 Deoxycytidylate hydroxymethylase. Chain: a, b. Synonym: deoxycytidylat --end-- VNG06472 one-of-top-five-correct: 0.360701996316539 CThresh: 3.481176 75 best_is: cluster00 VNG06472 cluster00 -> 1a3aA0 7.8298290 145 / 65 conP: 0.240 CATH-ID: 3.40.930.10 Mannitol-specific eii. Chain: a, b, c, d. Fragment: iia domain, residu VNG06472 cluster01 -> 1a6jA0 6.4195216 150 / 65 conP: 0.166 CATH-ID: 3.40.930.10 Nitrogen regulatory iia protein. Chain: a, b. Synonym: iia-nitrogen, e VNG06472 cluster02 -> 1efuB2 6.3221028 86 / 65 conP: 0.279 CATH-ID: 3.50.13.10 Elongation factor tu. Chain: a, c. Synonym: elongation factor for tran VNG06472 cluster03 -> 1e79A3 5.4605450 131 / 65 conP: 0.156 CATH-ID: 1.20.150.20 Atp synthase alpha chain heart isoform. Chain: a, b, c. Synonym: bovin VNG06472 cluster04 -> 1mroA3 6.5374922 227 / 65 conP: 0.083 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: --end-- VNG0652h one-of-top-five-correct: 0.292198450139534 CThresh: 3.021920 75 best_is: cluster05 VNG0652h cluster00 -> 1in4A 6.4458751 298 / 48 conP: 0.013 NO-CATH VNG0652h cluster01 -> 1b25A2 5.7383489 178 / 48 conP: 0.057 CATH-ID: 1.10.569.10 Formaldehyde ferredoxin oxidoreductase. Chain: a, b, c, d. Fragment: d VNG0652h cluster02 -> 1b0pA6 6.2100330 385 / 48 conP: 0.003 CATH-ID: 3.40.50.970 Pyruvate-ferredoxin oxidoreductase. Chain: a, b. Biological_unit: homo VNG0652h cluster03 -> 1d2zA0 6.9175592 102 / 48 conP: 0.205 CATH-ID: 1.10.533.10 Death domain of pelle. Chain: a, c. Engineered: yes. Death domain of t VNG0652h cluster04 -> 1ej5A0 5.0308228 107 / 48 conP: 0.122 CATH-ID: 1.10.850.10 Wiskott-aldrich syndrome protein. Chain: a. Synonym: wasp. Engineered: VNG0652h cluster05 -> 1c9bA2 7.1534013 106 / 48 conP: 0.207 CATH-ID: 1.10.472.10 General transcription factor iib. Chain: a, e, i, m, q. Fragment: c-te --end-- VNG06541 one-of-top-five-correct: 0.230295362809029 CThresh: 5.544515 75 best_is: cluster18 VNG06541 cluster00 -> 1be3B2 5.7319448 204 / 82 conP: 0.092 CATH-ID: 3.30.830.10 Cytochrome bc1 complex. Chain: a, b, c, d, e, f, g, h, i, j, k. Synony VNG06541 cluster01 -> 1qftA0 5.7319448 175 / 82 conP: 0.115 CATH-ID: 2.40.128.20 Female-specific histamine binding protein 2. Chain: a. Engineered: yes VNG06541 cluster02 -> 1bebA0 6.3503005 156 / 82 conP: 0.155 CATH-ID: 2.40.128.20 Beta-lactoglobulin. Chain: a, b. Biological_unit: predominantly dimeri VNG06541 cluster03 -> 1gcuA2 6.3503005 148 / 82 conP: 0.164 CATH-ID: 3.30.360.10 Biliverdin reductase a. Chain: a. Engineered: yes VNG06541 cluster04 -> 1jjcA0 6.1335139 266 / 82 conP: 0.063 CATH-ID: 3.40.690.10 Phenylalanyl-tRNA synthetase alpha chain. Chain: a. Fragment: alpha ch VNG06541 cluster18 -> 1mpgA1 6.6419725 112 / 82 conP: 0.224 CATH-ID: 3.30.310.20 3-methyladenine DNA glycosylase ii. Chain: a, b. Synonym: alka. Engine --end-- VNG0656h one-of-top-five-correct: 0.243710811251534 CThresh: 6.757725 75 best_is: cluster07 VNG0656h cluster00 -> 2hvm00 6.7745971 273 / 78 conP: 0.048 CATH-ID: 3.20.20.80 Hevamine. Chain: null. Synonym: chitinase/lysozyme. Ec: 3.2.1.14, 3.2. VNG0656h cluster01 -> 1dekA2 6.0733971 121 / 78 conP: 0.138 CATH-ID: 1.10.238.70 Deoxynucleoside monophosphate kinase. Chain: a, b. Engineered: yes VNG0656h cluster02 -> 2end00 5.9664954 137 / 78 conP: 0.118 CATH-ID: 1.10.440.10 Endonuclease v VNG0656h cluster03 -> 1csc02 6.4671364 112 / 78 conP: 0.162 CATH-ID: 1.10.230.10 Citrate synthase l-malate - carboxymethyl coenzyme A complex VNG0656h cluster04 -> 1hwxA1 5.3602307 51 / 78 conP: 0.196 CATH-ID: 1.20.15.110 Glutamate dehydrogenase. Chain: a, b, c, d, e, f. Synonym: gdh. Ec: 1. VNG0656h cluster07 -> 1abv00 7.4863919 105 / 78 conP: 0.217 CATH-ID: 1.10.520.20 Delta subunit of the f1f0-atp synthase. Chain: null. Fragment: n-termi --end-- VNG0659h one-of-top-five-correct: 0.477445316808095 CThresh: 5.182291 75 best_is: cluster08 VNG0659h cluster00 -> 1a7602 6.2252623 60 / 74 conP: 0.280 CATH-ID: 1.10.150.20 Flap endonuclease-1 protein. Chain: null VNG0659h cluster01 -> 1aa7A1 7.7057378 79 / 74 conP: 0.333 CATH-ID: 1.20.91.10 Influenza virus matrix protein. Chain: a, b. Biological_unit: dimer VNG0659h cluster02 -> 1dpe03 6.8162340 219 / 74 conP: 0.093 CATH-ID: 3.10.105.10 Dipeptide-binding protein. Chain: null. Synonym: dipeptide permease VNG0659h cluster03 -> 1colA0 8.4732312 197 / 74 conP: 0.169 CATH-ID: 1.10.490.30 Colicin A (c-terminal domain) (pore-forming domain) VNG0659h cluster04 -> 1qj2A2 5.5734860 82 / 74 conP: 0.207 CATH-ID: 1.10.150.120 Carbon monoxide dehydrogenase. Chain: a, g. Carbon monoxide dehydrogen VNG0659h cluster08 -> 2hmqA0 9.7159792 113 / 74 conP: 0.392 CATH-ID: 1.20.120.50 Hemerythrin (met) --end-- VNG0660h one-of-top-five-correct: 0.428313367101295 CThresh: 8.678880 25 best_is: cluster13 VNG0660h cluster00 -> 2ng101 5.5334008 89 / 127 conP: 0.183 CATH-ID: 1.20.120.140 Signal sequence recognition protein ffh. Chain: null. Fragment: ng gtp VNG0660h cluster01 -> 1bmtA1 7.9545061 87 / 127 conP: 0.313 CATH-ID: 1.10.1240.10 Methionine synthase (b12-binding domains) VNG0660h cluster02 -> 1kdxA0 5.8751760 81 / 127 conP: 0.205 CATH-ID: 1.10.246.20 Cbp. Chain: a. Fragment: kix, residues 586-666. Synonym: creb-binding VNG0660h cluster03 -> 1bg8A0 6.8441284 76 / 127 conP: 0.260 CATH-ID: 1.10.890.10 Hdea. Chain: a, b, c. Synonym: 10k-s protein, hypothetical protein a VNG0660h cluster04 -> 1fts01 7.4669250 84 / 127 conP: 0.287 CATH-ID: 1.20.120.140 Ftsy. Chain: null. Fragment: ng-domain residues 197 - 497. Engineered: VNG0660h cluster13 -> 1jdfA 9.5516024 442 / 127 conP: 0.093 NO-CATH --end-- VNG06660 one-of-top-five-correct: 0.628676754057468 CThresh: 6.987192 32 best_is: cluster02 VNG06660 cluster00 -> 1c17M0 9.9727243 142 / 122 conP: 0.452 CATH-ID: 1.20.120.220 Atp synthase subunit c. Chain: a, b, c, d, e, f, g, h, i, j, k, l. Eng VNG06660 cluster01 -> 1am300 7.1826310 70 / 122 conP: 0.358 CATH-ID: 1.10.1200.30 HIV capsid. Chain: null. Fragment: c-terminal domain, residues 151 - 2 VNG06660 cluster02 -> 1ffyA3 11.130136 254 / 122 conP: 0.377 CATH-ID: 1.10.730.10 Isoleucyl-tRNA synthetase. Chain: a. Synonym: isoleucine--tRNA ligase, VNG06660 cluster03 -> 1fpoA 10.346859 171 / 122 conP: 0.438 NO-CATH VNG06660 cluster04 -> 2a3dA0 7.8940306 73 / 122 conP: 0.402 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes --end-- VNG06741 one-of-top-five-correct: 0.609300604873714 CThresh: 3.134951 75 best_is: cluster08 VNG06741 cluster00 -> 1qrjB2 7.3743731 81 / 101 conP: 0.510 CATH-ID: 1.10.1200.30 His tag. Chain: a. Engineered: yes. Htlv-i capsid protein. Chain: b. E VNG06741 cluster01 -> 1d1dA2 9.0294546 80 / 101 conP: 0.628 CATH-ID: 1.10.1200.30 Capsid protein. Chain: a. Engineered: yes. Mutation: yes VNG06741 cluster02 -> 1fftC0 6.6240080 185 / 101 conP: 0.290 CATH-ID: 1.20.120.80 Ubiquinol oxidase. Chain: a, f. Engineered: yes. Ubiquinol oxidase. Ch VNG06741 cluster03 -> 1d1dA2 8.6248678 80 / 101 conP: 0.600 CATH-ID: 1.10.1200.30 Capsid protein. Chain: a. Engineered: yes. Mutation: yes VNG06741 cluster04 -> 1qrjB2 7.3743731 81 / 101 conP: 0.510 CATH-ID: 1.10.1200.30 His tag. Chain: a. Engineered: yes. Htlv-i capsid protein. Chain: b. E VNG06741 cluster08 -> 1d1dA2 9.6363348 80 / 101 conP: 0.668 CATH-ID: 1.10.1200.30 Capsid protein. Chain: a. Engineered: yes. Mutation: yes --end-- VNG0676c one-of-top-five-correct: 0.2928722098475 CThresh: 7.371396 25 best_is: cluster09 VNG0676c cluster00 -> 1av401 6.6827657 87 / 126 conP: 0.296 CATH-ID: 3.10.30.70 Amine oxidase. Chain: null. Synonym: agao. Biological_unit: dimer VNG0676c cluster01 -> 1qmhA2 5.2858508 91 / 126 conP: 0.215 CATH-ID: 3.30.360.20 RNA 3'-terminal phosphate cyclase. Chain: a, b. Engineered: yes VNG0676c cluster02 -> 1de4C1 5.2212008 307 / 126 conP: 0.075 CATH-ID: 3.40.630.10 Hemochromatosis protein. Chain: a, d, g. Fragment: ectodomain. Synonym VNG0676c cluster03 -> 1di2A0 5.5319096 69 / 126 conP: 0.250 CATH-ID: 3.30.160.20 Double stranded RNA binding protein a. Chain: a, b. Fragment: second d VNG0676c cluster04 -> 1b9hA2 4.8210281 139 / 126 conP: 0.155 CATH-ID: 3.30.70.160 3-amino-5-hydroxybenzoic acid synthase. Chain: a. Synonym: ahba syntha VNG0676c cluster09 -> 1ospO2 7.3587552 76 / 126 conP: 0.351 CATH-ID: 2.20.50.10 Fab 184.1. Chain: l, h. Outer surface protein a. Chain: o. Synonym: os --end-- VNG0677h one-of-top-five-correct: 0.361655424043705 CThresh: 6.993651 61 best_is: cluster07 VNG0677h cluster00 -> 1hp800 6.8180843 68 / 94 conP: 0.272 CATH-ID: 1.10.810.10 Hu-p8. Chain: null. Engineered: synthetic gene. Mutation: n-terminal i VNG0677h cluster01 -> 1avpA0 7.9077387 204 / 94 conP: 0.157 CATH-ID: 3.40.395.10 Adenoviral proteinase. Chain: a. Fragment: main. Synonym: avp. Enginee VNG0677h cluster02 -> 2tpsA0 5.3085446 226 / 94 conP: 0.069 CATH-ID: 3.20.20.90 Thiamin phosphate synthase. Chain: a, b. Biological_unit: monomer. Oth VNG0677h cluster03 -> 1eal00 5.9106584 127 / 94 conP: 0.156 CATH-ID: 2.40.128.20 Ileal lipid binding protein. Chain: null. Synonym: gastrotropin. Engin VNG0677h cluster04 -> 1ijqA0 5.8298407 308 / 94 conP: 0.045 CATH-ID: 2.130.10.20 Low-density lipoprotein receptor. Chain: a, b. Fragment: ywtd-e3 domai VNG0677h cluster07 -> 1qazA0 8.7737438 351 / 94 conP: 0.074 CATH-ID: 1.50.40.20 Alginate lyase a1-iii. Chain: a. Engineered: yes. Biological_unit: mon --end-- VNG06901 one-of-top-five-correct: 0.512311074213076 CThresh: 8.018797 25 best_is: cluster14 VNG06901 cluster00 -> 1b3qA1 8.1948677 62 / 134 conP: 0.410 CATH-ID: 1.20.15.220 Chemotaxis protein chea. Chain: a, b. Fragment: dimerization domain, k VNG06901 cluster01 -> 1dkxA2 7.6134008 80 / 134 conP: 0.348 CATH-ID: 1.20.120.110 Substrate binding domain of dnak. Chain: a. Biological_unit: dimer. Su VNG06901 cluster02 -> 1dowA 8.2432448 200 / 134 conP: 0.255 NO-CATH VNG06901 cluster03 -> 1dkxA2 7.4111074 80 / 134 conP: 0.335 CATH-ID: 1.20.120.110 Substrate binding domain of dnak. Chain: a. Biological_unit: dimer. Su VNG06901 cluster04 -> 1fpoA 9.0531888 171 / 134 conP: 0.335 NO-CATH VNG06901 cluster14 -> 1jgjA0 10.018124 217 / 134 conP: 0.343 CATH-ID: 1.20.85.10 Sensory rhodopsin ii. Chain: a. Engineered: yes --end-- VNG0697h one-of-top-five-correct: 0.152456692630607 CThresh: 3.002673 99 best_is: cluster17 VNG0697h cluster00 -> 3vub00 4.3569731 101 / 37 conP: 0.070 CATH-ID: 2.30.30.150 Ccdb. Chain: null. Engineered: yes. Biological_unit: dimer VNG0697h cluster01 -> 1a0p02 4.6116387 180 / 37 conP: 0.018 CATH-ID: 1.10.443.10 Site-specific recombinase xerd. Chain: null. Engineered: yes VNG0697h cluster02 -> 1iow02 4.3569731 149 / 37 conP: 0.029 CATH-ID: 3.30.470.20 D-ala\:d-ala ligase. Chain: null. Synonym: dd-ligase, ddlb. Engineered VNG0697h cluster03 -> 1dpe02 4.1023074 119 / 37 conP: 0.047 CATH-ID: 3.40.191.30 Dipeptide-binding protein. Chain: null. Synonym: dipeptide permease VNG0697h cluster04 -> 1a0oF0 4.1023074 69 / 37 conP: 0.114 CATH-ID: 3.30.70.400 Chey. Chain: a, c, e, g. Engineered: yes. Chea. Chain: b, d, f, h. Fra VNG0697h cluster17 -> 1qmuA1 5.1209701 301 / 37 conP: 0.002 CATH-ID: 3.40.630.10 Carboxypeptidase gp180 residues 503-882. Chain: a. Fragment: yes. Engi --end-- VNG06981 one-of-top-five-correct: 0.472048564730054 CThresh: 2.947000 100 best_is: cluster11 VNG06981 cluster00 -> 1vig00 6.7554423 71 / 60 conP: 0.345 CATH-ID: 3.30.70.210 Vigilin. Chain: null. Fragment: kh6, residues 432 to 501. Engineered: VNG06981 cluster01 -> 1psdA3 8.5205200 82 / 60 conP: 0.435 CATH-ID: 3.30.70.260 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase) VNG06981 cluster02 -> 1psdA3 8.9617895 82 / 60 conP: 0.466 CATH-ID: 3.30.70.260 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase) VNG06981 cluster03 -> 1fjcA0 7.4173465 96 / 60 conP: 0.322 CATH-ID: 3.30.70.330 Nucleolin rbd2. Chain: a. Synonym: protein c23. Engineered: yes VNG06981 cluster04 -> 1bowA0 7.1967117 143 / 60 conP: 0.205 CATH-ID: 3.20.80.10 Multidrug-efflux transporter 1 regulator bmrr. Chain: a. Fragment: mul VNG06981 cluster11 -> 1b6400 8.9617895 91 / 60 conP: 0.440 CATH-ID: 3.30.70.60 Elongation factor 1-beta. Chain: null. Fragment: guanine exchange fact --end-- VNG07002 one-of-top-five-correct: 0.346441041223086 CThresh: 6.683558 75 best_is: cluster16 VNG07002 cluster00 -> 1lki00 6.6397526 172 / 97 conP: 0.157 CATH-ID: 1.20.120.200 Leukemia inhibitory factor (lif) VNG07002 cluster01 -> 1pmt02 7.1769650 107 / 97 conP: 0.258 CATH-ID: 1.20.1050.10 Glutathione transferase. Chain: null. Synonym: pmgst, gst b1-1. Engine VNG07002 cluster02 -> 1ehkA0 6.4747774 544 / 97 conP: 0.012 CATH-ID: 1.20.210.20 Ba3-type cytochromE-C oxidase. Chain: a. Fragment: subunit i. Ba3-type VNG07002 cluster03 -> 2gsaA1 5.7116236 178 / 97 conP: 0.120 CATH-ID: 3.30.70.160 Glutamate semialdehyde aminotransferase. Chain: a, b. Synonym: glutama VNG07002 cluster04 -> 1fjgB1 6.6655659 175 / 97 conP: 0.155 CATH-TRUNC VNG07002 cluster16 -> 1g3sA 8.3826619 212 / 97 conP: 0.187 NO-CATH --end-- VNG07004 one-of-top-five-correct: 0.0227989726500031 CThresh: 7.052781 25 best_is: --end-- VNG0702h one-of-top-five-correct: 0.469820006135541 CThresh: 3.004569 82 best_is: cluster14 VNG0702h cluster00 -> 1pytA0 6.8831284 92 / 67 conP: 0.331 CATH-ID: 3.30.70.340 Procarboxypeptidase a. Chain: a, b. Proproteinase e. Chain: c. Chymotr VNG0702h cluster01 -> 1aw000 6.7652840 72 / 67 conP: 0.371 CATH-ID: 3.30.70.100 Menkes copper-transporting atpase. Chain: null. Fragment: fourth metal VNG0702h cluster02 -> 1gtxA1 6.2428316 167 / 67 conP: 0.158 CATH-ID: 3.30.70.160 4-aminobutyrate aminotransferase. Chain: a, b, c, d. Synonym: gaba-at. VNG0702h cluster03 -> 1kp6A0 6.5540825 79 / 67 conP: 0.340 CATH-ID: 3.30.70.440 Toxin. Chain: a VNG0702h cluster04 -> 1a3wA1 7.7368575 155 / 67 conP: 0.247 CATH-ID: 3.40.50.50 Pyruvate kinase. Chain: a, b. Biological_unit: tetramer VNG0702h cluster14 -> 1cc8A0 8.8040188 72 / 67 conP: 0.515 CATH-ID: 3.30.70.100 Metallochaperone atx1. Chain: a. Engineered: yes --end-- VNG0703h one-of-top-five-correct: 0.441038572960548 CThresh: 5.353972 75 best_is: cluster05 VNG0703h cluster00 -> 1dpuA0 8.1700819 69 / 93 conP: 0.439 CATH-ID: 1.10.10.10 Replication protein a (rpa32) c-terminal domain. Chain: a. Fragment: c VNG0703h cluster01 -> 1sfe02 7.5615109 84 / 93 conP: 0.370 CATH-ID: 1.10.10.10 Ada o6-methylguanine-DNA methyltransferase. Chain: null. Fragment: c-t VNG0703h cluster02 -> 1bgw05 7.7478716 253 / 93 conP: 0.148 CATH-ID: 3.90.199.10 Topoisomerase. Chain: null. Fragment: residues 410 - 1202. Engineered: VNG0703h cluster03 -> 1bia01 7.8777034 64 / 93 conP: 0.428 CATH-ID: 1.10.10.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG0703h cluster04 -> 1dpuA0 7.1555663 69 / 93 conP: 0.369 CATH-ID: 1.10.10.10 Replication protein a (rpa32) c-terminal domain. Chain: a. Fragment: c VNG0703h cluster05 -> 1bia01 8.9596877 64 / 93 conP: 0.505 CATH-ID: 1.10.10.10 Bira bifunctional protein (acts as biotin operon repressor and biotin --end-- VNG0704c one-of-top-five-correct: 0.62194952639746 CThresh: 6.991275 52 best_is: cluster00 VNG0704c cluster00 -> 1smtB0 11.053384 101 / 122 conP: 0.588 CATH-ID: 1.10.10.10 Transcriptional repressor smtb. Chain: a, b. Engineered: yes. Biologic VNG0704c cluster01 -> 1smtB0 10.002598 101 / 122 conP: 0.513 CATH-ID: 1.10.10.10 Transcriptional repressor smtb. Chain: a, b. Engineered: yes. Biologic VNG0704c cluster02 -> 1bia01 9.2412852 64 / 122 conP: 0.511 CATH-ID: 1.10.10.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG0704c cluster03 -> 1smtB0 7.8195968 101 / 122 conP: 0.359 CATH-ID: 1.10.10.10 Transcriptional repressor smtb. Chain: a, b. Engineered: yes. Biologic VNG0704c cluster04 -> 1bia01 8.3851769 64 / 122 conP: 0.449 CATH-ID: 1.10.10.10 Bira bifunctional protein (acts as biotin operon repressor and biotin --end-- VNG07051 one-of-top-five-correct: 0.335954212140053 CThresh: 3.189613 75 best_is: cluster01 VNG07051 cluster00 -> 1nkl00 6.8257166 78 / 65 conP: 0.342 CATH-ID: 1.10.225.10 Nk-lysin. Chain: null. Other_details: active by membrane-binding VNG07051 cluster01 -> 1a6q02 7.3990501 69 / 65 conP: 0.403 CATH-ID: 1.10.920.10 Phosphatase 2c. Chain: null. Engineered: yes VNG07051 cluster02 -> 1csh01 7.1836606 306 / 65 conP: 0.047 CATH-ID: 1.10.580.10 Citrate synthase complexed with oxaloacetate and amidocarboxymethyldet VNG07051 cluster03 -> 1b4fA0 6.9330855 74 / 65 conP: 0.359 CATH-ID: 1.10.150.50 Ephb2. Chain: a, b, c, d, e, f, g, h. Fragment: sam domain. Engineered VNG07051 cluster04 -> 1aab00 6.1067133 83 / 65 conP: 0.286 CATH-ID: 1.10.30.10 High mobility group protein. Chain: null. Fragment: fragment a (residu --end-- VNG07161 one-of-top-five-correct: 0.0229991745783155 CThresh: 6.998769 53 best_is: --end-- VNG07162 one-of-top-five-correct: 0.0436626910316455 CThresh: 3.000195 98 best_is: --end-- VNG0717h one-of-top-five-correct: 0.274345458829206 CThresh: 6.998967 34 best_is: cluster16 VNG0717h cluster00 -> 1c07A0 5.9547849 95 / 107 conP: 0.221 CATH-ID: 1.10.238.10 Epidermal growth factor receptor pathway substrate 15. Chain: a. Fragm VNG0717h cluster01 -> 1j7rA0 6.2056197 77 / 107 conP: 0.255 CATH-ID: 1.10.238.10 Calcium vector protein. Chain: a. Fragment: n-terminal domain (residue VNG0717h cluster02 -> 1bmtA2 4.9232018 158 / 107 conP: 0.122 CATH-ID: 3.40.50.280 Methionine synthase (b12-binding domains) VNG0717h cluster03 -> 1j4nA 5.1666738 249 / 107 conP: 0.076 NO-CATH VNG0717h cluster04 -> 1d8jA0 6.1651748 81 / 107 conP: 0.248 CATH-ID: 1.10.10.10 General transcription factor tfiie-beta. Chain: a. Fragment: central c VNG0717h cluster16 -> 1j7rA0 7.3727968 77 / 107 conP: 0.324 CATH-ID: 1.10.238.10 Calcium vector protein. Chain: a. Fragment: n-terminal domain (residue --end-- VNG07200 one-of-top-five-correct: 0.0153341152640561 CThresh: 9.492960 25 best_is: --end-- VNG07201 one-of-top-five-correct: 0.0199089687978625 CThresh: 7.888809 25 best_is: --end-- VNG0724h one-of-top-five-correct: 0.45221480325955 CThresh: 6.809054 75 best_is: cluster08 VNG0724h cluster00 -> 1cgo00 9.0205708 125 / 85 conP: 0.291 CATH-ID: 1.20.120.10 Cytochrome c' VNG0724h cluster01 -> 1k62A 6.3673688 450 / 85 conP: 0.013 NO-CATH VNG0724h cluster02 -> 2a3dA0 7.8357571 73 / 85 conP: 0.309 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes VNG0724h cluster03 -> 1jciA 7.5325840 294 / 85 conP: 0.062 NO-CATH VNG0724h cluster04 -> 1trlA0 6.8840319 62 / 85 conP: 0.271 CATH-ID: 1.10.390.10 Thermolysin fragment 255 - 316 (nmr, 8 structures) VNG0724h cluster08 -> 1fapB0 9.9255443 95 / 85 conP: 0.405 CATH-ID: 1.20.120.150 Fk506-binding protein. Chain: a. Synonym: fkbp12. Engineered: yes. Fra --end-- VNG07270 one-of-top-five-correct: 0.802954819114222 CThresh: 6.942673 35 best_is: cluster16 VNG07270 cluster00 -> 2occC1 8.8676803 70 / 161 conP: 0.568 CATH-ID: 1.20.15.40 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, VNG07270 cluster01 -> 1ez3A0 7.9355298 124 / 161 conP: 0.443 CATH-ID: 1.20.1040.20 Syntaxin-1a. Chain: a, b, c. Fragment: n-terminal domain. Synonym: syn VNG07270 cluster02 -> 1nfn00 9.6085570 132 / 161 conP: 0.555 CATH-ID: 1.20.120.20 Apolipoprotein e3. Chain: null. Fragment: 22kd receptor binding domain VNG07270 cluster03 -> 1dg3A1 7.1788848 300 / 161 conP: 0.229 CATH-ID: 1.20.1000.10 Interferon-induced guanylate-binding protein 1. Chain: a. Fragment: fu VNG07270 cluster04 -> 1bucA3 9.6115032 141 / 161 conP: 0.545 CATH-ID: 1.20.140.10 Butyryl-coa dehydrogenase (bcad) (bacterial short-chain acyl-coa dehyd VNG07270 cluster16 -> 1jqcA0 12.626359 340 / 161 conP: 0.546 CATH-ID: 1.10.620.20 Protein r2 of ribonucleotide reductase. Chain: a, b. Synonym: ribonucl --end-- VNG07271 one-of-top-five-correct: 0.433285547968176 CThresh: 3.264725 75 best_is: cluster15 VNG07271 cluster00 -> 1g71A 6.0101414 344 / 62 conP: 0.019 NO-CATH VNG07271 cluster01 -> 1pbe01 7.3209771 231 / 62 conP: 0.090 CATH-ID: 3.50.50.60 P-hydroxybenzoate hydroxylase (phbh) complexed with p-hydroxybenzoic a VNG07271 cluster02 -> 1vin02 5.7916687 113 / 62 conP: 0.194 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O VNG07271 cluster03 -> 1derA1 6.4978235 250 / 62 conP: 0.059 CATH-ID: 1.10.560.10 Groel. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n. Engineered: ye VNG07271 cluster04 -> 1vin01 6.4470866 139 / 62 conP: 0.178 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O VNG07271 cluster15 -> 1lre00 8.6318129 81 / 62 conP: 0.439 CATH-ID: 1.20.81.10 Receptor-associated protein. Chain: null. Fragment: n-terminal domain, --end-- VNG07272 one-of-top-five-correct: 0.728727731902654 CThresh: 6.965579 72 best_is: cluster00 VNG07272 cluster00 -> 1cxzB0 11.359415 86 / 167 conP: 0.726 CATH-ID: 1.20.15.130 His-tagged transforming protein rhoa(0-181). Chain: a. Fragment: resid VNG07272 cluster01 -> 1joyA0 8.1637220 67 / 167 conP: 0.533 CATH-ID: 1.20.15.210 Envz_ecoli. Chain: a, b. Fragment: residues 223-289. Engineered: yes VNG07272 cluster02 -> 1cxzB0 8.9643520 86 / 167 conP: 0.570 CATH-ID: 1.20.15.130 His-tagged transforming protein rhoa(0-181). Chain: a. Fragment: resid VNG07272 cluster03 -> 1a9100 11.306694 79 / 167 conP: 0.729 CATH-ID: 1.20.20.10 F1fo atpase subunit c. Chain: null. Synonym: proteolipid, dccd-binding VNG07272 cluster04 -> 1cxzB0 8.5844543 86 / 167 conP: 0.543 CATH-ID: 1.20.15.130 His-tagged transforming protein rhoa(0-181). Chain: a. Fragment: resid --end-- VNG07351 one-of-top-five-correct: 0.285932317142699 CThresh: 3.649829 75 best_is: cluster00 VNG07351 cluster00 -> 1nal10 7.1725275 291 / 56 conP: 0.029 CATH-ID: 3.20.20.70 N-acetylneuraminate lyase. Chain: 1, 2, 3, 4. Ec: 4.1.3.3 VNG07351 cluster01 -> 1bq7A0 5.8210601 186 / 56 conP: 0.069 CATH-ID: 3.40.30.10 Disulfide oxidoreductase. Chain: a, b, c, d, e, f. Synonym: dsba. Engi VNG07351 cluster02 -> 1exnA1 4.5637760 79 / 56 conP: 0.165 CATH-ID: 1.10.150.20 5'-exonuclease. Chain: a, b. Synonym: 5'-nuclease. 5'-3' exonuclease. VNG07351 cluster03 -> 1sly03 5.3705710 173 / 56 conP: 0.072 CATH-ID: 1.10.530.10 70-kda soluble lytic transglycosylase. Chain: null. Synonym: slt70, ex VNG07351 cluster04 -> 2cblA2 5.5958156 89 / 56 conP: 0.190 CATH-ID: 1.10.238.10 Proto-oncogene cbl. Chain: a. Fragment: domain. Engineered: yes. Zap-7 --end-- VNG0737h one-of-top-five-correct: 0.311908508695676 CThresh: 5.345739 75 best_is: cluster18 VNG0737h cluster00 -> 2tpt01 7.3647714 107 / 73 conP: 0.246 CATH-ID: 1.20.970.10 Thymidine phosphorylase. Chain: null. Biological_unit: dimer. Other_de VNG0737h cluster01 -> 1guxB0 5.8142472 141 / 73 conP: 0.131 CATH-ID: 1.10.472.10 Retinoblastoma protein. Chain: a, b. Fragment: pocket domain. Engineer VNG0737h cluster02 -> 2tct01 5.7371282 65 / 73 conP: 0.234 CATH-ID: 1.10.10.60 Tetracycline repressor. Chain: null. Synonym: tet repressor, class d. VNG0737h cluster03 -> 1fp1D 6.4381822 340 / 73 conP: 0.026 NO-CATH VNG0737h cluster04 -> 1ag200 6.3977893 103 / 73 conP: 0.205 CATH-ID: 1.10.790.10 Major prion protein. Chain: null. Fragment: domain 121 - 231. Synonym: VNG0737h cluster18 -> 1cy5A0 7.8940306 92 / 73 conP: 0.305 CATH-ID: 1.10.533.10 Apoptotic protease activating factor 1. Chain: a. Fragment: caspase re --end-- VNG0741h one-of-top-five-correct: 0.418835735709516 CThresh: 5.630963 75 best_is: cluster10 VNG0741h cluster00 -> 1csh01 5.4528411 306 / 99 conP: 0.063 CATH-ID: 1.10.580.10 Citrate synthase complexed with oxaloacetate and amidocarboxymethyldet VNG0741h cluster01 -> 1de4C1 6.5337821 307 / 99 conP: 0.084 CATH-ID: 3.40.630.10 Hemochromatosis protein. Chain: a, d, g. Fragment: ectodomain. Synonym VNG0741h cluster02 -> 1l5vA 7.2449346 796 / 99 conP: 0.004 NO-CATH VNG0741h cluster03 -> 1cg2A1 6.0410362 279 / 99 conP: 0.088 CATH-ID: 3.40.630.10 Carboxypeptidase g2. Chain: a, b, c, d. Engineered: yes. Biological_un VNG0741h cluster04 -> 1fpoA 6.7220542 171 / 99 conP: 0.202 NO-CATH VNG0741h cluster10 -> 1bif01 8.7006427 206 / 99 conP: 0.259 CATH-ID: 3.40.50.300 6-phosphofructo-2-kinase/ fructose-2,6-bisphosphatase. Chain: null. En --end-- VNG0751c one-of-top-five-correct: 0.257569196370733 CThresh: 7.169012 25 best_is: cluster04 VNG0751c cluster00 -> 1c82A 6.2444155 719 / 103 conP: 0.004 NO-CATH VNG0751c cluster01 -> 2antI2 4.6294199 256 / 103 conP: 0.056 CATH-ID: 3.30.497.10 Antithrombin. Chain: l, i. Biological_unit: monomer. Other_details: an VNG0751c cluster02 -> 1eo0A0 5.3895366 77 / 103 conP: 0.199 CATH-ID: 1.20.930.10 Transcription elongation factor s-ii. Chain: a. Fragment: domain i. En VNG0751c cluster03 -> 1cfh00 5.5524610 47 / 103 conP: 0.242 CATH-ID: 4.10.750.10 Coagulation factor ix (the gla and aromatic amino acid stack domains f VNG0751c cluster04 -> 1jwfA 7.3056876 139 / 103 conP: 0.221 NO-CATH --end-- VNG07540 one-of-top-five-correct: 0.401309769532031 CThresh: 5.078900 75 best_is: cluster02 VNG07540 cluster00 -> 1gdz00 7.7296265 151 / 77 conP: 0.219 CATH-ID: 1.10.375.10 Human immunodeficiency virus type 1 capsid protein. Chain: null. Fragm VNG07540 cluster01 -> 1ej4A0 5.8877842 179 / 77 conP: 0.113 CATH-ID: 3.30.760.10 Eukaryotic initiation factor 4e. Chain: a. Fragment: residues 28-217. VNG07540 cluster02 -> 3erdA0 8.7528722 245 / 77 conP: 0.138 CATH-ID: 1.10.565.10 Estrogen receptor alpha. Chain: a, b. Fragment: ligand-binding domain. VNG07540 cluster03 -> 1jinA0 7.1156790 403 / 77 conP: 0.023 CATH-ID: 1.10.630.10 Cytochrome p450 107a1. Chain: a. Synonym: 6-deoxyerythronolide b hydro VNG07540 cluster04 -> 1de6A0 7.7296265 416 / 77 conP: 0.025 CATH-ID: 3.20.20.310 L-rhamnose isomerase. Chain: a, b, c, d. Engineered: yes --end-- VNG07611 one-of-top-five-correct: 0.635968200097619 CThresh: 2.847078 100 best_is: cluster14 VNG07611 cluster00 -> 1db3A0 7.6902430 335 / 78 conP: 0.083 CATH-ID: 3.40.50.720 Gdp-mannose 4,6-dehydratase. Chain: a. Engineered: yes VNG07611 cluster01 -> 1dctA1 9.7287539 173 / 78 conP: 0.410 CATH-ID: 3.40.50.150 DNA (cytosine-5) methylase from haeiii. Chain: a, b. Synonym: methyltr VNG07611 cluster02 -> 1diiA1 5.8555831 231 / 78 conP: 0.119 CATH-ID: 3.40.462.10 P-cresol methylhydroxylase. Chain: a, b. Fragment: flavoprotein subuni VNG07611 cluster03 -> 1db3A0 7.0786897 335 / 78 conP: 0.070 CATH-ID: 3.40.50.720 Gdp-mannose 4,6-dehydratase. Chain: a. Engineered: yes VNG07611 cluster04 -> 1dar04 8.0979451 119 / 78 conP: 0.413 CATH-ID: 3.30.230.10 Elongation factor g. Chain: null. Synonym: ef-g VNG07611 cluster14 -> 1qd9A0 10.340307 124 / 78 conP: 0.563 CATH-ID: 3.30.70.130 Purine regulatory protein yabj. Chain: a, b, c. Engineered: yes --end-- VNG0762h one-of-top-five-correct: 0.186923609363393 CThresh: 1.040655 100 best_is: cluster06 VNG0762h cluster00 -> 1sknP0 4.6688540 74 / 36 conP: 0.170 CATH-ID: 1.10.880.10 Transcription factor skn-1. Chain: p. Fragment: binding domain. Engine VNG0762h cluster01 -> 1fchA0 4.1554256 302 / 36 conP: 0.002 CATH-ID: 1.25.40.140 Peroxisomal targeting signal 1 receptor. Chain: a, b. Fragment: c-term VNG0762h cluster02 -> 1sknP0 4.6688540 74 / 36 conP: 0.170 CATH-ID: 1.10.880.10 Transcription factor skn-1. Chain: p. Fragment: binding domain. Engine VNG0762h cluster03 -> 1sknP0 4.4121398 74 / 36 conP: 0.160 CATH-ID: 1.10.880.10 Transcription factor skn-1. Chain: p. Fragment: binding domain. Engine VNG0762h cluster04 -> 1qk9A0 3.8987114 92 / 36 conP: 0.103 CATH-ID: 3.30.890.10 Methyl-cpg-binding protein 2. Chain: a. Fragment: mcpg binding domain VNG0762h cluster06 -> 1sknP0 4.9255682 74 / 36 conP: 0.180 CATH-ID: 1.10.880.10 Transcription factor skn-1. Chain: p. Fragment: binding domain. Engine --end-- VNG07630 one-of-top-five-correct: 0.037504005581682 CThresh: 3.002778 82 best_is: --end-- VNG0765h one-of-top-five-correct: 0.280021572157104 CThresh: 5.246099 75 best_is: cluster05 VNG0765h cluster00 -> 1gtmA2 6.3150175 238 / 57 conP: 0.032 CATH-ID: 3.40.50.720 Glutamate dehydrogenase. Chain: a, b, c. Biological_unit: homohexamer VNG0765h cluster01 -> 1f37A0 4.9872601 109 / 57 conP: 0.100 CATH-ID: 3.40.30.10 Ferredoxin [2fe-2s]. Chain: a, b. Engineered: yes VNG0765h cluster02 -> 1es8A0 4.8812285 192 / 57 conP: 0.037 CATH-ID: 3.40.91.20 Restriction endonuclease bglii. Chain: a. Engineered: yes VNG0765h cluster03 -> 1rthA2 6.6736612 94 / 57 conP: 0.178 CATH-ID: 3.30.70.270 HIV-1 reverse transcriptase. Chain: a, b. Synonym: HIV-1 rt. Engineere VNG0765h cluster04 -> 1aroP3 5.7774449 150 / 57 conP: 0.077 CATH-ID: 3.30.70.370 T7 RNA polymerase. Chain: p. Engineered: yes. Mutation: c347s, c723s, VNG0765h cluster05 -> 3pte00 7.7939316 347 / 57 conP: 0.013 CATH-ID: 3.40.710.10 D-alanyl-d-alanine carboxypeptidase/transpeptidase --end-- VNG07660 one-of-top-five-correct: 0.036176407392655 CThresh: 3.228653 75 best_is: --end-- VNG0767h one-of-top-five-correct: 0.452715992443907 CThresh: 2.589704 100 best_is: cluster17 VNG0767h cluster00 -> 1qqeA0 7.2950264 281 / 58 conP: 0.048 CATH-ID: 1.25.40.10 Vesicular transport protein sec17. Chain: a. Engineered: yes. Mutation VNG0767h cluster01 -> 1jzsA 6.8492472 821 / 58 conP: 0.000 NO-CATH VNG0767h cluster02 -> 1h6pA 7.2947360 188 / 58 conP: 0.135 NO-CATH VNG0767h cluster03 -> 1bs2A2 7.2950264 125 / 58 conP: 0.250 CATH-ID: 1.20.1010.10 Arginyl-tRNA synthetase. Chain: a. Synonym: argrs, arginine - tRNA lig VNG0767h cluster04 -> 1cpy02 6.9324823 72 / 58 conP: 0.362 CATH-ID: 1.20.1030.10 Serine carboxypeptidase. Chain: null. Mutation: e65a, e145a VNG0767h cluster17 -> 1qgkA 8.6323640 876 / 58 conP: 0.000 NO-CATH --end-- VNG0768h one-of-top-five-correct: 0.398504580530437 CThresh: 3.496018 75 best_is: cluster08 VNG0768h cluster00 -> 1qgpA0 7.1364653 76 / 73 conP: 0.385 CATH-ID: 1.10.10.10 Double stranded RNA adenosine deaminase. Chain: a. Fragment: z-alpha d VNG0768h cluster01 -> 1dq3A4 6.8429362 114 / 73 conP: 0.286 CATH-ID: 3.10.28.10 Endonuclease. Chain: a. Engineered: yes VNG0768h cluster02 -> 1kkrA 7.4548913 401 / 73 conP: 0.030 NO-CATH VNG0768h cluster03 -> 1ft1A0 6.5305400 315 / 73 conP: 0.050 CATH-ID: 1.25.40.120 Protein farnesyltransferase. Chain: a, b. Engineered: yes VNG0768h cluster04 -> 1ft1A0 6.7325151 315 / 73 conP: 0.053 CATH-ID: 1.25.40.120 Protein farnesyltransferase. Chain: a, b. Engineered: yes VNG0768h cluster08 -> 1bia01 8.0941003 64 / 73 conP: 0.481 CATH-ID: 1.10.10.10 Bira bifunctional protein (acts as biotin operon repressor and biotin --end-- VNG0769h one-of-top-five-correct: 0.161789327513106 CThresh: 10.418718 25 best_is: cluster00 VNG0769h cluster00 -> 1dn1A4 6.4456872 198 / 135 conP: 0.108 CATH-ID: 3.40.50.1910 Syntaxin binding protein 1. Chain: a. Synonym: nsec1. Engineered: yes. VNG0769h cluster01 -> 1jxpA1 5.9535469 88 / 135 conP: 0.157 CATH-ID: 2.40.10.120 Ns3 serine protease. Chain: a, b. Synonym: hydrolase. Engineered: yes. VNG0769h cluster02 -> 1mla02 4.3380082 232 / 135 conP: 0.053 CATH-ID: 3.40.366.10 Malonyl-coenzyme a acyl carrier protein transacylase. Chain: null. Syn VNG0769h cluster03 -> 4monA 4.0167388 44 / 135 conP: 0.118 NO-CATH VNG0769h cluster04 -> 1cbg00 4.4254293 490 / 135 conP: 0.015 CATH-ID: 3.20.20.80 Cyanogenic beta-glucosidase. Chain: null. Ec: 3.2.1.21 --end-- VNG0772h one-of-top-five-correct: 0.384114969418526 CThresh: 6.230430 75 best_is: cluster01 VNG0772h cluster00 -> 1crkA2 6.0117153 279 / 86 conP: 0.054 CATH-ID: 3.30.590.10 Creatine kinase. Chain: a, b, c, d. Biological_unit: octamer VNG0772h cluster01 -> 1alo07 8.8727702 201 / 86 conP: 0.197 CATH-ID: 3.30.365.10 Aldehyde oxidoreductase. Chain: null. Synonym: molybdenum iron sulfur VNG0772h cluster02 -> 1ad201 6.8033273 121 / 86 conP: 0.206 CATH-ID: 3.30.190.20 Ribosomal protein l1. Chain: null. Synonym: tl2. Engineered: yes. Muta VNG0772h cluster03 -> 2kfnA1 5.4551646 217 / 86 conP: 0.074 CATH-ID: 3.30.420.10 Klenow fragment. Chain: a. Synonym: large fragment. Engineered: yes. B VNG0772h cluster04 -> 1dqwA0 6.2096183 267 / 86 conP: 0.062 CATH-ID: 3.20.20.90 Orotidine 5'-phosphate decarboxylase. Chain: a, b, c, d. Engineered: y --end-- VNG07791 one-of-top-five-correct: 0.390265142058001 CThresh: 3.018797 92 best_is: cluster09 VNG07791 cluster00 -> 1qstA0 6.4063814 160 / 60 conP: 0.142 CATH-ID: 3.40.630.30 Tgcn5 histone acetyl transferase. Chain: a. Engineered: yes. Biologica VNG07791 cluster01 -> 1tplA1 6.5348076 181 / 60 conP: 0.119 CATH-ID: 3.30.70.160 Tyrosine phenol-lyase VNG07791 cluster02 -> 1qstA0 7.9327614 160 / 60 conP: 0.205 CATH-ID: 3.40.630.30 Tgcn5 histone acetyl transferase. Chain: a. Engineered: yes. Biologica VNG07791 cluster03 -> 1alo04 5.8729035 157 / 60 conP: 0.128 CATH-ID: 3.30.365.10 Aldehyde oxidoreductase. Chain: null. Synonym: molybdenum iron sulfur VNG07791 cluster04 -> 1fmtA1 7.4173465 202 / 60 conP: 0.120 CATH-ID: 3.40.50.170 Methionyl-tRNA fmet formyltransferase. Chain: a, b. Synonym: 10-formyl VNG07791 cluster09 -> 1bob02 8.0792506 124 / 60 conP: 0.290 CATH-ID: 3.40.630.30 Histone acetyltransferase. Chain: null. Synonym: hat1. Engineered: yes --end-- VNG07793 one-of-top-five-correct: 0.182797333164245 CThresh: 6.998657 40 best_is: cluster13 VNG07793 cluster00 -> 1ahjB1 4.2626235 110 / 69 conP: 0.076 CATH-ID: 1.10.472.20 Nitrile hydratase. Chain: a, b, c, d, e, f, g, h. Biological_unit: het VNG07793 cluster01 -> 1fm2A0 3.8395282 151 / 69 conP: 0.046 CATH-ID: 1.10.439.10 Glutaryl 7-aminocephalosporanic acid acylase. Chain: a. Fragment: alph VNG07793 cluster02 -> 1bu2A1 3.4164328 112 / 69 conP: 0.059 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG07793 cluster03 -> 1ha7A 5.3203619 162 / 69 conP: 0.061 NO-CATH VNG07793 cluster04 -> 2scpA0 4.9158397 174 / 69 conP: 0.049 CATH-ID: 1.10.238.10 Sarcoplasmic calcium-binding protein VNG07793 cluster13 -> 1dtyA1 6.8011957 159 / 69 conP: 0.094 CATH-ID: 3.30.70.160 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase. Chain: a, --end-- VNG0780h one-of-top-five-correct: 0.416853918319 CThresh: 3.054171 75 best_is: cluster00 VNG0780h cluster00 -> 1mml02 8.4660938 146 / 57 conP: 0.239 CATH-ID: 3.30.70.270 Mmlv reverse transcriptase. Chain: null. Engineered: yes VNG0780h cluster01 -> 2scpA0 5.5533908 174 / 57 conP: 0.088 CATH-ID: 1.10.238.10 Sarcoplasmic calcium-binding protein VNG0780h cluster02 -> 1f0kA2 5.3293367 176 / 57 conP: 0.081 CATH-ID: 3.40.50.2000 Udp-n-acetylglucosamine-n-acetylmuramyl- (pentapeptide) pyrophosphoryl VNG0780h cluster03 -> 1sknP0 4.2129066 74 / 57 conP: 0.182 CATH-ID: 1.10.880.10 Transcription factor skn-1. Chain: p. Fragment: binding domain. Engine VNG0780h cluster04 -> 1ngr00 4.6284104 85 / 57 conP: 0.180 CATH-ID: 1.10.533.10 P75 low affinity neurotrophin receptor. Chain: null. Fragment: death d --end-- VNG0788h one-of-top-five-correct: 0.315763910273228 CThresh: 3.066902 75 best_is: cluster00 VNG0788h cluster00 -> 1skf00 7.3877451 262 / 52 conP: 0.038 CATH-ID: 3.40.710.10 D-alanyl-d-alanine transpeptidase. Chain: null. Ec: 3.4.16.4 VNG0788h cluster01 -> 1epaA0 6.4665934 160 / 52 conP: 0.106 CATH-ID: 2.40.128.20 Epididymal retinoic acid-binding protein (androgen dependent secretory VNG0788h cluster02 -> 1d4tA0 6.4665934 104 / 52 conP: 0.201 CATH-ID: 3.30.505.10 T cell signal transduction molecule sap. Chain: a. Fragment: sh2 domai VNG0788h cluster03 -> 1kit01 6.0060175 177 / 52 conP: 0.076 CATH-ID: 2.60.120.200 Sialidase. Chain: null. Synonym: neuraminidase. Engineered: yes VNG0788h cluster04 -> 1f8dA0 6.6968813 385 / 52 conP: 0.006 CATH-ID: 2.120.10.10 Neuraminidase. Chain: a. Fragment: integral membrane protein, membrane --end-- VNG07900 one-of-top-five-correct: 0.296263176720148 CThresh: 3.923428 75 best_is: cluster16 VNG07900 cluster00 -> 1bwzA2 4.4477581 137 / 63 conP: 0.100 CATH-ID: 3.10.310.10 Diaminopimelate epimerase. Chain: a. Synonym: dap epimerase. Engineere VNG07900 cluster01 -> 1ptvA0 5.7523041 297 / 63 conP: 0.027 CATH-ID: 3.90.190.10 Protein tyrosine phosphatase 1b. Chain: a. Engineered: yes. Mutation: VNG07900 cluster02 -> 1bmqA0 5.3174554 167 / 63 conP: 0.092 CATH-ID: 3.40.50.1460 Interleukin-1 beta convertase. Chain: a. Synonym: ice, il-1beta conver VNG07900 cluster03 -> 1g4wR0 5.3174554 341 / 63 conP: 0.015 CATH-ID: 3.90.190.10 Protein tyrosine phosphatase sptp. Chain: r. Fragment: sptp residues 1 VNG07900 cluster04 -> 1e39A3 4.7790654 320 / 63 conP: 0.016 CATH-ID: 3.50.50.60 Flavocytochrome c3. Chain: a. Engineered: yes. Mutation: yes VNG07900 cluster16 -> 1om2A0 7.2742744 95 / 63 conP: 0.285 CATH-ID: 1.20.960.10 Mitochondrial import receptor subunit tom20. Chain: a. Fragment: resid --end-- VNG08041 one-of-top-five-correct: 0.485486930054342 CThresh: 4.746231 75 best_is: cluster16 VNG08041 cluster00 -> 1e7aA2 6.3268870 90 / 98 conP: 0.326 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG08041 cluster01 -> 1vin02 7.1755989 113 / 98 conP: 0.344 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O VNG08041 cluster02 -> 1qtnB 6.8041187 90 / 98 conP: 0.357 NO-CATH VNG08041 cluster03 -> 4crxA2 7.9908035 111 / 98 conP: 0.402 CATH-ID: 1.10.150.130 Cre recombinase. Chain: a, b. Engineered: yes. Mutation: r173k. Biolog VNG08041 cluster04 -> 1qqnA4 6.8689594 84 / 98 conP: 0.371 CATH-ID: 3.90.640.10 D206s mutant of bovine 70 kilodalton heat shock protein. Chain: a. Fra VNG08041 cluster16 -> 1vin02 9.0599126 113 / 98 conP: 0.474 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O --end-- VNG08042 one-of-top-five-correct: 0.55462126618553 CThresh: 3.645893 75 best_is: cluster05 VNG08042 cluster00 -> 1dqaA3 9.0205708 117 / 85 conP: 0.472 CATH-ID: 3.30.70.420 Hmg-coa reductase. Chain: a, b, c, d. Fragment: catalytic portion. Eng VNG08042 cluster01 -> 1qd1B1 9.2191779 180 / 85 conP: 0.360 CATH-ID: 3.30.990.10 Formiminotransferase-cyclodeaminase. Chain: a, b. Fragment: formiminot VNG08042 cluster02 -> 1aps00 7.9169531 98 / 85 conP: 0.432 CATH-ID: 3.30.70.100 Acylphosphatase (nmr, 5 structures) VNG08042 cluster03 -> 1qd1B1 8.8219637 180 / 85 conP: 0.334 CATH-ID: 3.30.990.10 Formiminotransferase-cyclodeaminase. Chain: a, b. Fragment: formiminot VNG08042 cluster04 -> 1aps00 8.5174686 98 / 85 conP: 0.475 CATH-ID: 3.30.70.100 Acylphosphatase (nmr, 5 structures) VNG08042 cluster05 -> 2dnjA0 9.6163922 253 / 85 conP: 0.257 CATH-ID: 3.60.10.10 Deoxyribonuclease i (dnase i) complexed with DNA (5'-d( Gp Cp Gp Ap Tp --end-- VNG0811h one-of-top-five-correct: 0.328067004904878 CThresh: 8.587373 25 best_is: cluster03 VNG0811h cluster00 -> 1eyqA1 5.9581160 53 / 129 conP: 0.243 CATH-ID: 1.10.890.20 Chalcone-flavonone isomerase 1. Chain: a, b. Synonym: chalcone isomera VNG0811h cluster01 -> 1jp6A 5.8175653 152 / 129 conP: 0.153 NO-CATH VNG0811h cluster02 -> 1r2aA0 5.8426196 46 / 129 conP: 0.244 CATH-ID: 1.20.890.10 Camp-dependent protein kinase type ii regulatory subunit. Chain: a, b. VNG0811h cluster03 -> 1flp00 8.2923250 142 / 129 conP: 0.280 CATH-ID: 1.10.490.10 Hemoglobin i (monomeric) (ferric) VNG0811h cluster04 -> 1brwA2 6.7339826 272 / 129 conP: 0.109 CATH-ID: 3.40.1030.10 Pyrimidine nucleoside phosphorylase. Chain: a, b. Synonym: pynp. Ec: 2 --end-- VNG08160 one-of-top-five-correct: 0.0193369121878881 CThresh: 6.361206 75 best_is: --end-- VNG08161 one-of-top-five-correct: 0.0231926920938354 CThresh: 5.239882 75 best_is: --end-- VNG08180 one-of-top-five-correct: 0.160572416289633 CThresh: 6.592642 75 best_is: cluster01 VNG08180 cluster00 -> 1ctt01 4.4552401 151 / 77 conP: 0.072 CATH-ID: 3.40.140.10 Cytidine deaminase (cda) complexed with 3,4-dihydrozebularine (dhz) VNG08180 cluster01 -> 1bjwA2 6.0065648 218 / 77 conP: 0.062 CATH-ID: 3.40.640.10 Aspartate aminotransferase. Chain: a, b. Engineered: yes. Biological_u VNG08180 cluster02 -> 1dar01 5.6084551 258 / 77 conP: 0.039 CATH-ID: 3.40.50.300 Elongation factor g. Chain: null. Synonym: ef-g VNG08180 cluster03 -> 1krs00 4.0806083 110 / 77 conP: 0.092 CATH-ID: 2.40.50.10 Lysyl-tRNA synthetase (product of lyss gene). Chain: null. Domain: ant VNG08180 cluster04 -> 1ej4A0 5.3172600 179 / 77 conP: 0.071 CATH-ID: 3.30.760.10 Eukaryotic initiation factor 4e. Chain: a. Fragment: residues 28-217. --end-- VNG08181 one-of-top-five-correct: 0.593950064081739 CThresh: 4.692874 75 best_is: cluster15 VNG08181 cluster00 -> 1obpA0 6.9106043 158 / 83 conP: 0.208 CATH-ID: 2.40.128.20 Odorant-binding protein. Chain: a, b. Synonym: obp VNG08181 cluster01 -> 1dim00 8.5029215 381 / 83 conP: 0.059 CATH-ID: 2.120.10.10 Sialidase. Chain: null. Engineered: yes VNG08181 cluster02 -> 1i4fA 8.7029691 275 / 83 conP: 0.141 NO-CATH VNG08181 cluster03 -> 1jv4A 7.0068057 157 / 83 conP: 0.214 NO-CATH VNG08181 cluster04 -> 1mup00 8.2873420 157 / 83 conP: 0.282 CATH-ID: 2.40.128.20 Major urinary protein complex with 2-(sec-butyl) thiazoline VNG08181 cluster15 -> 1bj700 10.577384 150 / 83 conP: 0.446 CATH-ID: 2.40.128.20 D 2. Chain: null. Synonym: dander major allergen bda20, dermal allerge --end-- VNG08190 one-of-top-five-correct: 0.200524858459502 CThresh: 6.951401 49 best_is: cluster18 VNG08190 cluster00 -> 1dynA0 3.4319944 113 / 77 conP: 0.070 CATH-ID: 2.30.29.30 Dynamin (pleckstrin homology domain) (dynph) VNG08190 cluster01 -> 4crxA2 4.0459419 111 / 77 conP: 0.084 CATH-ID: 1.10.150.130 Cre recombinase. Chain: a, b. Engineered: yes. Mutation: r173k. Biolog VNG08190 cluster02 -> 1h7zA0 3.6366436 191 / 77 conP: 0.038 CATH-ID: 2.60.90.10 Adenovirus fibre protein. Chain: a, b, c. Fragment: head domain residu VNG08190 cluster03 -> 1bk6A0 5.2738367 422 / 77 conP: 0.008 CATH-ID: 1.25.30.10 Karyopherin alpha. Chain: a, b. Fragment: armadillo domain. Synonym: i VNG08190 cluster04 -> 1aquA0 3.6366436 281 / 77 conP: 0.017 CATH-ID: 3.40.50.300 Estrogen sulfotransferase. Chain: a, b. Synonym: est. Engineered: yes. VNG08190 cluster18 -> 1gqtA 6.9110299 305 / 77 conP: 0.035 NO-CATH --end-- VNG08191 one-of-top-five-correct: 0.337751292480581 CThresh: 6.994986 32 best_is: cluster03 VNG08191 cluster00 -> 1jjcB 6.5593817 785 / 94 conP: 0.002 NO-CATH VNG08191 cluster01 -> 1avgI0 6.8835039 142 / 94 conP: 0.180 CATH-ID: 2.40.128.20 Thrombin. Chain: l, h. Other_details: thE C-terminal segment of the l- VNG08191 cluster02 -> 1obpA0 6.1741369 158 / 94 conP: 0.137 CATH-ID: 2.40.128.20 Odorant-binding protein. Chain: a, b. Synonym: obp VNG08191 cluster03 -> 1bj700 8.4865082 150 / 94 conP: 0.247 CATH-ID: 2.40.128.20 D 2. Chain: null. Synonym: dander major allergen bda20, dermal allerge VNG08191 cluster04 -> 1avgI0 6.6951796 142 / 94 conP: 0.172 CATH-ID: 2.40.128.20 Thrombin. Chain: l, h. Other_details: thE C-terminal segment of the l- --end-- VNG08232 one-of-top-five-correct: 0.430175722442826 CThresh: 4.812572 75 best_is: cluster05 VNG08232 cluster00 -> 1otgA0 7.1156790 125 / 77 conP: 0.240 CATH-ID: 3.30.457.20 5-carboxymethyl-2-hydroxymuconate isomerase. Chain: a, b, c. Engineere VNG08232 cluster01 -> 1sesA2 8.1389247 318 / 77 conP: 0.068 CATH-ID: 3.40.690.10 Seryl-tRNA synthetase (serine-tRNA ligase) complexed with seryl-hydrox VNG08232 cluster02 -> 1cwn_ 6.2970824 324 / 77 conP: 0.039 NO-CATH VNG08232 cluster03 -> 1de4C1 7.5249773 307 / 77 conP: 0.064 CATH-ID: 3.40.630.10 Hemochromatosis protein. Chain: a, d, g. Fragment: ectodomain. Synonym VNG08232 cluster04 -> 1pkp01 5.2933069 70 / 77 conP: 0.235 CATH-ID: 3.30.160.30 Ribosomal protein s5 (prokaryotic) VNG08232 cluster05 -> 1fruA1 8.9575213 177 / 77 conP: 0.251 CATH-ID: 3.30.500.10 Fc (igg) receptor (neonatal) (orthorhombic crystal form) (fcrn) (extra --end-- VNG08260 one-of-top-five-correct: 0.261391726831656 CThresh: 6.390255 75 best_is: cluster06 VNG08260 cluster00 -> 3pte00 7.2146660 347 / 77 conP: 0.029 CATH-ID: 3.40.710.10 D-alanyl-d-alanine carboxypeptidase/transpeptidase VNG08260 cluster01 -> 1ddzA1 6.2709528 227 / 77 conP: 0.064 CATH-ID: 3.40.1050.10 Carbonic anhydrase. Chain: a, b. Engineered: yes VNG08260 cluster02 -> 1h6lA0 6.4034974 353 / 77 conP: 0.022 CATH-ID: 2.120.10.20 Phytase. Chain: a VNG08260 cluster03 -> 1pda03 7.0918284 87 / 77 conP: 0.237 CATH-ID: 3.30.160.40 Porphobilinogen deaminase VNG08260 cluster04 -> 1kobA2 7.3203282 243 / 77 conP: 0.074 CATH-ID: 1.10.510.10 Twitchin. Chain: a, b. Fragment: kinase fragment. Engineered: yes VNG08260 cluster06 -> 1evyA 7.5990038 346 / 77 conP: 0.033 NO-CATH --end-- VNG08261 one-of-top-five-correct: 0.351006052767712 CThresh: 6.982731 59 best_is: cluster11 VNG08261 cluster00 -> 1au1A0 6.3088651 166 / 127 conP: 0.212 CATH-ID: 1.20.120.210 Interferon-beta. Chain: a, b. Engineered: yes VNG08261 cluster01 -> 1ku3A 6.2709434 61 / 127 conP: 0.322 NO-CATH VNG08261 cluster02 -> 1mnmA 6.2400712 85 / 127 conP: 0.292 NO-CATH VNG08261 cluster03 -> 3crd00 5.5456370 100 / 127 conP: 0.237 CATH-ID: 1.10.533.10 Raidd. Chain: null. Fragment: card domain. Engineered: yes VNG08261 cluster04 -> 1ku3A 5.6123159 61 / 127 conP: 0.282 NO-CATH VNG08261 cluster11 -> 1cd1A1 7.8902535 178 / 127 conP: 0.284 CATH-ID: 3.30.500.10 Cd1. Chain: a, b, c, d. Fragment: alpha1, alpha2, alpha3, beta2-microg --end-- VNG0828h one-of-top-five-correct: 0.516784952812023 CThresh: 4.460898 75 best_is: cluster08 VNG0828h cluster00 -> 1vin01 8.3017962 139 / 78 conP: 0.303 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O VNG0828h cluster01 -> 1ahjB1 8.9133495 110 / 78 conP: 0.402 CATH-ID: 1.10.472.20 Nitrile hydratase. Chain: a, b, c, d, e, f, g, h. Biological_unit: het VNG0828h cluster02 -> 1bu2A1 6.2632853 112 / 78 conP: 0.235 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG0828h cluster03 -> 1serA1 6.4160811 53 / 78 conP: 0.353 CATH-ID: 1.20.15.10 Seryl-tRNA synthetase complexed with tRNA-ser 2 (gga anticodon) VNG0828h cluster04 -> 1jkw02 6.5448042 101 / 78 conP: 0.269 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y VNG0828h cluster08 -> 1vin02 9.7287539 113 / 78 conP: 0.453 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O --end-- VNG08311 one-of-top-five-correct: 0.0240010224009588 CThresh: 5.731012 75 best_is: --end-- VNG08340 one-of-top-five-correct: 0.262195223747547 CThresh: 5.893155 75 best_is: cluster08 VNG08340 cluster00 -> 1bvp11 5.4936097 120 / 89 conP: 0.169 CATH-ID: 1.10.250.10 Bluetongue virus 10 (usa) vp7 (btv-10 (usa) vp7) VNG08340 cluster01 -> 1mhlC0 5.7292526 466 / 89 conP: 0.014 CATH-ID: 1.10.640.10 Myeloperoxidase. Chain: a, c, b, d. Other_details: isoform c VNG08340 cluster02 -> 1gkxA 4.7499933 308 / 89 conP: 0.036 NO-CATH VNG08340 cluster03 -> 1vnc01 4.9458452 176 / 89 conP: 0.101 CATH-ID: 1.20.144.10 Vanadium-containing chloroperoxidase. Chain: null. Ec: 1.11.1.10 VNG08340 cluster04 -> 1khuA 5.7292526 198 / 89 conP: 0.106 NO-CATH VNG08340 cluster08 -> 2gsaA1 7.1117008 178 / 89 conP: 0.171 CATH-ID: 3.30.70.160 Glutamate semialdehyde aminotransferase. Chain: a, b. Synonym: glutama --end-- VNG0836h one-of-top-five-correct: 0.251568414701848 CThresh: 8.270384 25 best_is: cluster03 VNG0836h cluster00 -> 1ala01 6.8541389 73 / 125 conP: 0.278 CATH-ID: 1.10.220.10 Annexin v VNG0836h cluster01 -> 1ala01 6.4381822 73 / 125 conP: 0.255 CATH-ID: 1.10.220.10 Annexin v VNG0836h cluster02 -> 1af800 5.4012240 86 / 125 conP: 0.191 CATH-ID: 1.10.1200.10 Actinorhodin polyketide synthase acyl carrier protein. Chain: null. Sy VNG0836h cluster03 -> 1pprM1 7.2176511 155 / 125 conP: 0.213 CATH-ID: 1.40.10.10 Peridinin-chlorophyll protein. Chain: m, n, o. Synonym: pcp VNG0836h cluster04 -> 1qsaA2 6.3401063 70 / 125 conP: 0.252 CATH-ID: 1.10.1240.20 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein --end-- VNG0837h one-of-top-five-correct: 0.426078324067288 CThresh: 5.949506 75 best_is: cluster01 VNG0837h cluster00 -> 1msk02 6.9829269 88 / 95 conP: 0.302 CATH-ID: 1.10.288.10 Cobalamin-dependent methionine synthase. Chain: null. Fragment: activa VNG0837h cluster01 -> 1cf7A0 9.0174511 67 / 95 conP: 0.476 CATH-ID: 1.10.10.10 Transcription factor e2f-4. Chain: a. Fragment: DNA-binding domain. En VNG0837h cluster02 -> 1brwA3 7.7678901 67 / 95 conP: 0.388 CATH-ID: 1.20.970.10 Pyrimidine nucleoside phosphorylase. Chain: a, b. Synonym: pynp. Ec: 2 VNG0837h cluster03 -> 1bia01 7.5290686 64 / 95 conP: 0.377 CATH-ID: 1.10.10.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG0837h cluster04 -> 1bia01 8.3851769 64 / 95 conP: 0.436 CATH-ID: 1.10.10.10 Bira bifunctional protein (acts as biotin operon repressor and biotin --end-- VNG08451 one-of-top-five-correct: 0.472301132122509 CThresh: 5.977498 75 best_is: cluster14 VNG08451 cluster00 -> 1ihgA 7.3569379 364 / 101 conP: 0.071 NO-CATH VNG08451 cluster01 -> 1repC2 7.8743821 91 / 101 conP: 0.371 CATH-ID: 1.10.10.10 DNA (5'- d( Cp Cp Tp Gp Tp Gp Ap Cp Ap Ap Ap Tp Tp Gp Cp Cp Cp Tp Cp A VNG08451 cluster02 -> 1fjgO0 6.8474450 88 / 101 conP: 0.309 CATH-TRUNC VNG08451 cluster03 -> 1jqcA0 6.6686362 340 / 101 conP: 0.069 CATH-ID: 1.10.620.20 Protein r2 of ribonucleotide reductase. Chain: a, b. Synonym: ribonucl VNG08451 cluster04 -> 1ba500 5.7291335 53 / 101 conP: 0.293 CATH-ID: 1.10.10.60 Htrf1. Chain: null. Fragment: DNA-binding domain. Synonym: telomeric r VNG08451 cluster14 -> 1jud02 9.4053399 75 / 101 conP: 0.506 CATH-ID: 1.10.164.10 L-2-haloacid dehalogenase. Chain: null. Engineered: yes --end-- VNG08511 one-of-top-five-correct: 0.295087039562946 CThresh: 6.311597 75 best_is: cluster12 VNG08511 cluster00 -> 1vin01 6.3061950 139 / 80 conP: 0.144 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O VNG08511 cluster01 -> 1l1tA 5.7927602 259 / 80 conP: 0.048 NO-CATH VNG08511 cluster02 -> 1dguA0 4.8521374 183 / 80 conP: 0.070 CATH-ID: 1.10.238.10 Calcium-saturated cib. Chain: a VNG08511 cluster03 -> 1b7eA2 5.6160581 126 / 80 conP: 0.134 CATH-ID: 1.10.740.10 Transposase inhibitor protein from tn5. Chain: a. Engineered: yes VNG08511 cluster04 -> 1c07A0 7.1735240 95 / 80 conP: 0.241 CATH-ID: 1.10.238.10 Epidermal growth factor receptor pathway substrate 15. Chain: a. Fragm VNG08511 cluster12 -> 1bi2B1 7.9547763 73 / 80 conP: 0.325 CATH-ID: 1.10.10.10 Diphtheria toxin repressor. Chain: a, b. Synonym: dtxr. Engineered: ye --end-- VNG08520 one-of-top-five-correct: 0.240486364070253 CThresh: 6.623753 75 best_is: cluster01 VNG08520 cluster00 -> 1lbu02 5.9535469 129 / 88 conP: 0.153 CATH-ID: 3.30.70.540 Muramoyl-pentapeptide carboxypeptidase. Chain: null. Ec: 3.4.17.8 VNG08520 cluster01 -> 1cg2A2 7.1498220 110 / 88 conP: 0.229 CATH-ID: 3.30.70.360 Carboxypeptidase g2. Chain: a, b, c, d. Engineered: yes. Biological_un VNG08520 cluster02 -> 1fruA1 6.1500725 177 / 88 conP: 0.115 CATH-ID: 3.30.500.10 Fc (igg) receptor (neonatal) (orthorhombic crystal form) (fcrn) (extra VNG08520 cluster03 -> 1egaA2 6.7674466 106 / 88 conP: 0.215 CATH-ID: 3.30.300.20 Gtp-binding protein era. Chain: a, b. Biological_unit: unknown VNG08520 cluster04 -> 1tfi00 5.4064474 50 / 88 conP: 0.224 CATH-ID: 2.20.30.20 Transcriptional elongation factor sii (tfiis, nucleic-acid binding dom --end-- VNG08521 one-of-top-five-correct: 0.398837824922297 CThresh: 5.844157 75 best_is: cluster17 VNG08521 cluster00 -> 1rkd02 5.8929132 256 / 113 conP: 0.125 CATH-ID: 3.90.77.20 Ribokinase. Chain: null. Engineered: yes. Biological_unit: homodimer VNG08521 cluster01 -> 1tfe02 5.1757254 45 / 113 conP: 0.301 CATH-ID: 1.20.12.10 Elongation factor ts. Chain: null. Fragment: ef-ts dimerization domain VNG08521 cluster02 -> 1bf6A0 6.2432243 291 / 113 conP: 0.113 CATH-ID: 3.20.20.140 Phosphotriesterase homology protein. Chain: a, b. Engineered: yes VNG08521 cluster03 -> 1qe0A2 5.3691143 91 / 113 conP: 0.255 CATH-ID: 3.40.50.800 Histidyl-tRNA synthetase. Chain: a, b. Engineered: yes VNG08521 cluster04 -> 1ku3A 5.6123159 61 / 113 conP: 0.307 NO-CATH VNG08521 cluster17 -> 1ej0A0 8.2519953 180 / 113 conP: 0.312 CATH-ID: 3.40.50.150 Ftsj. Chain: a. Synonym: ftsj methyltransferase. Engineered: yes --end-- VNG0853c one-of-top-five-correct: 0.545420700712265 CThresh: 6.388383 75 best_is: cluster16 VNG0853c cluster00 -> 1b91A0 7.9770709 118 / 131 conP: 0.405 CATH-ID: 1.20.920.10 Histone acetyltransferase. Chain: a. Fragment: bromodomain. Engineered VNG0853c cluster01 -> 1be3H0 6.5793224 64 / 131 conP: 0.377 CATH-ID: 1.10.287.20 Cytochrome bc1 complex. Chain: a, b, c, d, e, f, g, h, i, j, k. Synony VNG0853c cluster02 -> 1b91A0 7.8587732 118 / 131 conP: 0.396 CATH-ID: 1.20.920.10 Histone acetyltransferase. Chain: a. Fragment: bromodomain. Engineered VNG0853c cluster03 -> 1e52A0 5.3705710 56 / 131 conP: 0.309 CATH-ID: 4.10.860.10 Excinuclease abc subunit . Chain: a, b. Fragment: c-terminal domain re VNG0853c cluster04 -> 1cf7B0 7.9090100 82 / 131 conP: 0.447 CATH-ID: 1.10.10.10 Transcription factor e2f-4. Chain: a. Fragment: DNA-binding domain. En VNG0853c cluster16 -> 1aep00 9.7109317 153 / 131 conP: 0.482 CATH-ID: 1.20.120.20 Apolipophorin iii --end-- VNG0857c one-of-top-five-correct: 0.255046378638019 CThresh: 5.383352 75 best_is: cluster12 VNG0857c cluster00 -> 1e7aA3 6.3001248 92 / 88 conP: 0.262 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG0857c cluster01 -> 1abz00 5.0616836 38 / 88 conP: 0.276 CATH-ID: 1.20.860.10 Alpha-t-alpha. Chain: null. Synonym: ata. Engineered: yes. Other_detai VNG0857c cluster02 -> 1df4A0 6.2255530 57 / 88 conP: 0.314 CATH-ID: 1.20.15.180 HIV-1 envelope glycoprotein gp41. Chain: a. Fragment: residues 1 - 34 VNG0857c cluster03 -> 2a3dA0 6.1288549 73 / 88 conP: 0.282 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes VNG0857c cluster04 -> 1f4qA0 5.1674443 161 / 88 conP: 0.129 CATH-ID: 1.10.238.10 Grancalcin. Chain: a, b. Engineered: yes VNG0857c cluster12 -> 1bby00 6.8011957 69 / 88 conP: 0.330 CATH-ID: 1.10.10.10 Rap30. Chain: null. Fragment: DNA-binding domain. Synonym: transcripti --end-- VNG0861h one-of-top-five-correct: 0.415508019162279 CThresh: 6.985470 47 best_is: cluster03 VNG0861h cluster00 -> 1pdnC1 6.8180843 68 / 98 conP: 0.282 CATH-ID: 1.10.10.10 Prd paired domain. Chain: c. DNA. Chain: a, b VNG0861h cluster01 -> 1ipiA 5.7304974 114 / 98 conP: 0.171 NO-CATH VNG0861h cluster02 -> 1efvB0 7.2081034 252 / 98 conP: 0.106 CATH-ID: 3.40.50.1120 Electron transfer flavoprotein. Chain: a, b. Synonym: etf, hetf, elect VNG0861h cluster03 -> 1bqcA0 9.3002285 302 / 98 conP: 0.131 CATH-ID: 3.20.20.80 Beta-mannanase. Chain: a. Ec: 3.2.1.78 VNG0861h cluster04 -> 1gpb01 6.4473307 491 / 98 conP: 0.017 CATH-ID: 3.90.270.10 Glycogen phosphorylase b (t state) --end-- VNG0863h one-of-top-five-correct: 0.265268006805671 CThresh: 1.516403 100 best_is: cluster18 VNG0863h cluster00 -> 1a5t02 5.0231178 40 / 44 conP: 0.324 CATH-ID: 1.10.8.10 Delta prime. Chain: null. Synonym: holb. Engineered: yes. Biological_u VNG0863h cluster01 -> 1bg602 5.9527819 146 / 44 conP: 0.104 CATH-ID: 1.10.1040.10 N-(1-d-carboxylethyl)-l-norvaline dehydrogenase. Chain: null. Engineer VNG0863h cluster02 -> 1a1700 5.7107765 159 / 44 conP: 0.081 CATH-ID: 1.25.40.10 Serine/threonine protein phosphatase 5. Chain: null. Fragment: protein VNG0863h cluster03 -> 5eas01 5.4687711 160 / 44 conP: 0.075 CATH-ID: 1.50.30.10 5-epi-aristolochene synthase. Chain: null. Synonym: 5-epi-aristolochen VNG0863h cluster04 -> 1a9xA4 5.9527819 150 / 44 conP: 0.098 CATH-ID: 1.10.1030.10 Carbamoyl phosphate synthetase. Chain: a, b, c, d, e, f, g, h. Enginee VNG0863h cluster18 -> 1af800 6.1947873 86 / 44 conP: 0.244 CATH-ID: 1.10.1200.10 Actinorhodin polyketide synthase acyl carrier protein. Chain: null. Sy --end-- VNG08650 one-of-top-five-correct: 0.297039396349794 CThresh: 3.318847 75 best_is: cluster16 VNG08650 cluster00 -> 1l6wA 7.3290605 220 / 49 conP: 0.050 NO-CATH VNG08650 cluster01 -> 1a2oA1 5.4538549 133 / 49 conP: 0.096 CATH-ID: 3.40.50.3000 Cheb methylesterase. Chain: a, b. Engineered: yes. Biological_unit: mo VNG08650 cluster02 -> 1b4fA0 5.4538549 74 / 49 conP: 0.197 CATH-ID: 1.10.150.50 Ephb2. Chain: a, b, c, d, e, f, g, h. Fragment: sam domain. Engineered VNG08650 cluster03 -> 1hy1A3 4.5162522 72 / 49 conP: 0.162 CATH-ID: 1.10.40.30 Delta crystallin ii. Chain: a, b, c, d. Synonym: delta-2-crystallin, a VNG08650 cluster04 -> 1a7602 4.6168959 60 / 49 conP: 0.191 CATH-ID: 1.10.150.20 Flap endonuclease-1 protein. Chain: null VNG08650 cluster16 -> 1ak500 7.3290605 329 / 49 conP: 0.011 CATH-ID: 3.20.20.90 Inosine-5'-monophosphate dehydrogenase. Chain: null. Synonym: impdh. E --end-- VNG08651 one-of-top-five-correct: 0.346562388023422 CThresh: 6.331953 75 best_is: cluster05 VNG08651 cluster00 -> 1erv00 6.4244974 105 / 94 conP: 0.227 CATH-ID: 3.40.30.10 Thioredoxin. Chain: null. Engineered: yes. Mutation: c73s. Other_detai VNG08651 cluster01 -> 1nsf01 5.4036472 180 / 94 conP: 0.111 CATH-ID: 3.40.50.300 N-ethylmaleimide sensitive factor. Chain: null. Fragment: d2 hexameriz VNG08651 cluster02 -> 1cex00 5.7888920 197 / 94 conP: 0.110 CATH-ID: 3.40.50.950 Cutinase. Chain: null. Engineered: yes VNG08651 cluster03 -> 1cfyA0 5.2628095 133 / 94 conP: 0.146 CATH-ID: 3.40.20.10 Cofilin. Chain: a, b. Engineered: yes VNG08651 cluster04 -> 1a0dA0 7.7151163 437 / 94 conP: 0.035 CATH-ID: 3.20.20.150 Xylose isomerase. Chain: a, b, c, d. Synonym: glucose isomerase. Biolo VNG08651 cluster05 -> 1i60A 8.2929836 272 / 94 conP: 0.127 NO-CATH --end-- VNG0875c one-of-top-five-correct: 0.249663663713779 CThresh: 8.406480 25 best_is: cluster07 VNG0875c cluster00 -> 1qgpA0 5.9364206 76 / 115 conP: 0.202 CATH-ID: 1.10.10.10 Double stranded RNA adenosine deaminase. Chain: a. Fragment: z-alpha d VNG0875c cluster01 -> 1ns1A0 7.0621172 73 / 115 conP: 0.263 CATH-ID: 1.10.287.10 Nonstructural protein 1. Chain: a, b. Fragment: RNA-binding domain, re VNG0875c cluster02 -> 1fjgB2 4.9191921 62 / 115 conP: 0.171 CATH-TRUNC VNG0875c cluster03 -> 1fgjA2 5.4868887 230 / 115 conP: 0.080 CATH-ID: 1.20.850.10 Hydroxylamine oxidoreductase. Chain: a, b. Ec: 1.7.3.4 VNG0875c cluster04 -> 1a3qA2 5.9527819 44 / 115 conP: 0.236 CATH-ID: 1.10.15.20 Nuclear factor-kappa-b p52. Chain: a, b. Fragment: rel homology region VNG0875c cluster07 -> 1dlc01 7.4793115 229 / 115 conP: 0.135 CATH-ID: 1.20.190.10 Delta-endotoxin cryiiia (bt13) --end-- VNG0879c one-of-top-five-correct: 0.657064763938047 CThresh: 7.259591 25 best_is: cluster05 VNG0879c cluster00 -> 1egzA0 10.753372 291 / 120 conP: 0.284 CATH-ID: 3.20.20.80 Endoglucanase z. Chain: a, b, c. Fragment: catalytic domain. Synonym: VNG0879c cluster01 -> 1qtwA0 6.8018458 285 / 120 conP: 0.116 CATH-ID: 3.20.20.150 Endonuclease iv. Chain: a. Engineered: yes VNG0879c cluster02 -> 2dnjA0 6.8166899 253 / 120 conP: 0.137 CATH-ID: 3.60.10.10 Deoxyribonuclease i (dnase i) complexed with DNA (5'-d( Gp Cp Gp Ap Tp VNG0879c cluster03 -> 1ad4B0 10.571208 248 / 120 conP: 0.326 CATH-ID: 3.20.20.20 Dihydropteroate synthetase. Chain: a, b. Synonym: dhps. Ec: 2.5.1.15 VNG0879c cluster04 -> 2a3dA0 7.4780739 73 / 120 conP: 0.355 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes VNG0879c cluster05 -> 1cz1A0 11.637840 394 / 120 conP: 0.219 CATH-ID: 3.20.20.80 Exo-b-(1,3)-glucanase. Chain: a. Engineered: yes --end-- VNG08820 one-of-top-five-correct: 0.385602229256881 CThresh: 3.910106 75 best_is: cluster08 VNG08820 cluster00 -> 1e7aA5 7.2742744 112 / 63 conP: 0.249 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG08820 cluster01 -> 1bu2A1 7.9265474 112 / 63 conP: 0.285 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG08820 cluster02 -> 1bu2A1 7.0916476 112 / 63 conP: 0.239 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG08820 cluster03 -> 1ptvA0 5.1000311 297 / 63 conP: 0.022 CATH-ID: 3.90.190.10 Protein tyrosine phosphatase 1b. Chain: a. Engineered: yes. Mutation: VNG08820 cluster04 -> 1ahuA1 5.9697284 123 / 63 conP: 0.167 CATH-ID: 3.30.373.10 Vanillyl-alcohol oxidase. Chain: a, b. Biological_unit: octamer. Other VNG08820 cluster08 -> 1jkw01 8.3613961 176 / 63 conP: 0.182 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y --end-- VNG08851 one-of-top-five-correct: 0.0353092972609798 CThresh: 2.627391 100 best_is: --end-- VNG08853 one-of-top-five-correct: 0.027058904243574 CThresh: 4.285260 75 best_is: --end-- VNG08891 one-of-top-five-correct: 0.335655461430869 CThresh: 2.520051 100 best_is: cluster10 VNG08891 cluster00 -> 1dfx00 3.8190326 125 / 52 conP: 0.091 CATH-ID: 2.60.40.730 Desulfoferrodoxin. Chain: null. Biological_unit: probably active as a VNG08891 cluster01 -> 1aw8B0 4.8545778 90 / 52 conP: 0.178 CATH-ID: 2.40.40.20 L-aspartate-alpha-decarboxylase. Chain: a, b, d, e. Engineered: yes. B VNG08891 cluster02 -> 1dq3A4 6.0060175 114 / 52 conP: 0.179 CATH-ID: 3.10.28.10 Endonuclease. Chain: a. Engineered: yes VNG08891 cluster03 -> 1bdyA0 6.4665934 123 / 52 conP: 0.181 CATH-ID: 2.60.40.150 Protein kinasE C. Chain: a, b. Fragment: c2-domain. Synonym: pkc. Engi VNG08891 cluster04 -> 1c9fA0 3.9334261 87 / 52 conP: 0.147 CATH-ID: 3.10.20.140 Caspase-activated dnase. Chain: a. Fragment: n-terminal domain, residu VNG08891 cluster10 -> 1cs6A2 7.3877451 89 / 52 conP: 0.313 CATH-ID: 2.60.40.10 Axonin-1. Chain: a. Fragment: ig1-4. Engineered: yes --end-- VNG08892 one-of-top-five-correct: 0.245813951660187 CThresh: 3.073759 75 best_is: cluster05 VNG08892 cluster00 -> 1bw300 5.9581160 125 / 53 conP: 0.145 CATH-ID: 2.40.40.10 Barwin, basic barley seed protein (nmr, 20 structures) VNG08892 cluster01 -> 1ao3A0 4.5842208 187 / 53 conP: 0.048 CATH-ID: 3.40.50.410 Von willebrand factor. Chain: a, b. Fragment: a3 domain. Engineered: s VNG08892 cluster02 -> 1aw8B0 6.0451230 90 / 53 conP: 0.217 CATH-ID: 2.40.40.20 L-aspartate-alpha-decarboxylase. Chain: a, b, d, e. Engineered: yes. B VNG08892 cluster03 -> 1kh0A 6.2710659 65 / 53 conP: 0.291 NO-CATH VNG08892 cluster04 -> 1soxA3 6.4160811 123 / 53 conP: 0.166 CATH-ID: 2.60.40.650 Sulfite oxidase. Chain: a, b. Biological_unit: dimer VNG08892 cluster05 -> 1acc04 6.4160811 131 / 53 conP: 0.152 CATH-ID: 2.60.40.810 Anthrax protective antigen. Chain: null. Synonym: pa --end-- VNG08893 one-of-top-five-correct: 0.307177127513188 CThresh: 2.293029 100 best_is: cluster13 VNG08893 cluster00 -> 1dfuP0 6.2363054 94 / 52 conP: 0.243 CATH-ID: 2.40.240.10 Ribosomal protein l25. Chain: p. Engineered: yes. Other_details: prote VNG08893 cluster01 -> 1imt00 5.3151537 80 / 52 conP: 0.229 CATH-ID: 2.10.80.10 Intestinal toxin 1. Chain: null. Synonym: mit1 VNG08893 cluster02 -> 1dfuP0 6.4665934 94 / 52 conP: 0.256 CATH-ID: 2.40.240.10 Ribosomal protein l25. Chain: p. Engineered: yes. Other_details: prote VNG08893 cluster03 -> 1kh0A 4.5999242 65 / 52 conP: 0.228 NO-CATH VNG08893 cluster04 -> 1dfuP0 6.2363054 94 / 52 conP: 0.243 CATH-ID: 2.40.240.10 Ribosomal protein l25. Chain: p. Engineered: yes. Other_details: prote VNG08893 cluster13 -> 1d0nA5 6.9271692 96 / 52 conP: 0.276 CATH-ID: 3.40.20.10 Horse plasma gelsolin. Chain: a, b --end-- VNG08894 one-of-top-five-correct: 0.317199584893905 CThresh: 2.229953 100 best_is: cluster06 VNG08894 cluster00 -> 1tif00 6.6258584 76 / 49 conP: 0.299 CATH-ID: 3.10.20.80 Translation initiation factor 3. Chain: null. Domain: n-terminal resid VNG08894 cluster01 -> 1bob01 5.9226563 128 / 49 conP: 0.142 CATH-ID: 3.90.360.10 Histone acetyltransferase. Chain: null. Synonym: hat1. Engineered: yes VNG08894 cluster02 -> 1buoA0 5.2194542 121 / 49 conP: 0.130 CATH-ID: 3.30.710.10 Promyelocytic leukemia zinc finger protein plzf. Chain: a. Fragment: b VNG08894 cluster03 -> 1dfuP0 5.2194542 94 / 49 conP: 0.181 CATH-ID: 2.40.240.10 Ribosomal protein l25. Chain: p. Engineered: yes. Other_details: prote VNG08894 cluster04 -> 1kb5B0.man 4.7506529 114 / 49 conP: 0.126 NO-CATH VNG08894 cluster06 -> 1tif00 7.0946598 76 / 49 conP: 0.329 CATH-ID: 3.10.20.80 Translation initiation factor 3. Chain: null. Domain: n-terminal resid --end-- VNG08895 one-of-top-five-correct: 0.315391071263497 CThresh: 3.077322 75 best_is: cluster19 VNG08895 cluster00 -> 1pysB6 6.6968813 96 / 52 conP: 0.230 CATH-ID: 3.30.70.380 Phenylalanyl-tRNA synthetase. Chain: a, b. Biological_unit: tetramer o VNG08895 cluster01 -> 1d5rA2 6.6968813 133 / 52 conP: 0.154 CATH-ID: 2.60.40.1110 Phosphoinositide phosphotase pten. Chain: a. Fragment: residues 7-353. VNG08895 cluster02 -> 1jl0A 6.9271692 309 / 52 conP: 0.018 NO-CATH VNG08895 cluster03 -> 1jcxA 6.0060175 255 / 52 conP: 0.028 NO-CATH VNG08895 cluster04 -> 1bwzA2 7.1574571 137 / 52 conP: 0.164 CATH-ID: 3.10.310.10 Diaminopimelate epimerase. Chain: a. Synonym: dap epimerase. Engineere VNG08895 cluster19 -> 1gcuA2 7.3877451 148 / 52 conP: 0.153 CATH-ID: 3.30.360.10 Biliverdin reductase a. Chain: a. Engineered: yes --end-- VNG08896 one-of-top-five-correct: 0.38772325949354 CThresh: 2.869850 100 best_is: cluster17 VNG08896 cluster00 -> 1tif00 6.4967938 76 / 56 conP: 0.300 CATH-ID: 3.10.20.80 Translation initiation factor 3. Chain: null. Domain: n-terminal resid VNG08896 cluster01 -> 1tif00 6.1366280 76 / 56 conP: 0.278 CATH-ID: 3.10.20.80 Translation initiation factor 3. Chain: null. Domain: n-terminal resid VNG08896 cluster02 -> 1k2i1 5.3705710 236 / 56 conP: 0.040 NO-CATH VNG08896 cluster03 -> 1tif00 7.0263004 76 / 56 conP: 0.333 CATH-ID: 3.10.20.80 Translation initiation factor 3. Chain: null. Domain: n-terminal resid VNG08896 cluster04 -> 1gyfA0 5.5616595 62 / 56 conP: 0.280 CATH-ID: 2.30.35.50 Cytoplasmic domain binding protein (cd2bp2). Chain: a. Fragment: cd2-b VNG08896 cluster17 -> 1dfuP0 8.0735058 94 / 56 conP: 0.350 CATH-ID: 2.40.240.10 Ribosomal protein l25. Chain: p. Engineered: yes. Other_details: prote --end-- VNG0892h one-of-top-five-correct: 0.287656582018285 CThresh: 2.999765 100 best_is: cluster13 VNG0892h cluster00 -> 1eo0A0 4.7074607 77 / 50 conP: 0.173 CATH-ID: 1.20.930.10 Transcription elongation factor s-ii. Chain: a. Fragment: domain i. En VNG0892h cluster01 -> 1ezm01 6.5714252 152 / 50 conP: 0.112 CATH-ID: 3.10.170.10 Elastase (zinc metalloprotease) VNG0892h cluster02 -> 1a0dA0 5.4064474 437 / 50 conP: 0.002 CATH-ID: 3.20.20.150 Xylose isomerase. Chain: a, b, c, d. Synonym: glucose isomerase. Biolo VNG0892h cluster03 -> 1copD0 5.9554724 66 / 50 conP: 0.260 CATH-ID: 3.30.240.10 Cro repressor. Chain: d, e. Engineered: yes VNG0892h cluster04 -> 1amp00 6.8044207 291 / 50 conP: 0.019 CATH-ID: 3.40.630.10 Aminopeptidase (aeromonas proteolytica) VNG0892h cluster13 -> 1bxdA0 7.0374163 161 / 50 conP: 0.112 CATH-ID: 3.30.565.10 Osmolarity sensor protein (envz). Chain: a. Fragment: residues 290-450 --end-- VNG08980 one-of-top-five-correct: 0.49606439027316 CThresh: 3.260601 75 best_is: cluster06 VNG08980 cluster00 -> 1jl5A 6.4904859 353 / 61 conP: 0.018 NO-CATH VNG08980 cluster01 -> 1nf1A2 5.6123159 177 / 61 conP: 0.096 CATH-ID: 1.10.506.10 Neurofibromin. Chain: a. Fragment: gap related domain. Synonym: nf1-33 VNG08980 cluster02 -> 1g4aA0 8.0272833 173 / 61 conP: 0.183 CATH-ID: 3.60.20.10 Atp-dependent hsl protease atp-binding subunit hslu. Chain: e, f. Syno VNG08980 cluster03 -> 1ecbA1 6.0514009 321 / 61 conP: 0.023 CATH-ID: 3.60.20.10 Glutamine phosphoribosylpyrophosphate amidotransferase. Chain: a, b, c VNG08980 cluster04 -> 1ej4A0 6.7100284 179 / 61 conP: 0.125 CATH-ID: 3.30.760.10 Eukaryotic initiation factor 4e. Chain: a. Fragment: residues 28-217. VNG08980 cluster06 -> 1g4aA0 9.3445382 173 / 61 conP: 0.247 CATH-ID: 3.60.20.10 Atp-dependent hsl protease atp-binding subunit hslu. Chain: e, f. Syno --end-- VNG0907h one-of-top-five-correct: 0.327841214789507 CThresh: 1.574736 100 best_is: cluster06 VNG0907h cluster00 -> 1bgxT6 6.0271037 144 / 47 conP: 0.125 CATH-ID: 1.10.473.10 Taq DNA polymerase. Chain: t. Engineered: yes. Biological_unit: monome VNG0907h cluster01 -> 1bgxT6 5.5524610 144 / 47 conP: 0.111 CATH-ID: 1.10.473.10 Taq DNA polymerase. Chain: t. Engineered: yes. Biological_unit: monome VNG0907h cluster02 -> 1bgxT6 6.0271037 144 / 47 conP: 0.125 CATH-ID: 1.10.473.10 Taq DNA polymerase. Chain: t. Engineered: yes. Biological_unit: monome VNG0907h cluster03 -> 1bgxT6 6.7390678 144 / 47 conP: 0.149 CATH-ID: 1.10.473.10 Taq DNA polymerase. Chain: t. Engineered: yes. Biological_unit: monome VNG0907h cluster04 -> 1bgvA1 5.7897824 167 / 47 conP: 0.086 CATH-ID: 3.40.50.720 Glutamate dehydrogenase. Chain: a. Biological_unit: homohexamer VNG0907h cluster06 -> 1hy1A3 6.9763891 72 / 47 conP: 0.354 CATH-ID: 1.10.40.30 Delta crystallin ii. Chain: a, b, c, d. Synonym: delta-2-crystallin, a --end-- VNG09081 one-of-top-five-correct: 0.465945498610635 CThresh: 6.984128 45 best_is: cluster12 VNG09081 cluster00 -> 1mroA3 7.7431983 227 / 116 conP: 0.193 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: VNG09081 cluster01 -> 1fz1F2 7.9827296 73 / 116 conP: 0.394 CATH-ID: 1.20.88.10 Methane monooxygenase component a, alpha chain. Chain: a, b. Synonym: VNG09081 cluster02 -> 1aisB1 7.4751423 99 / 116 conP: 0.324 CATH-ID: 1.10.472.10 Tata-binding protein. Chain: a. Fragment: residues 1 - 181. Synonym: t VNG09081 cluster03 -> 1bu2A1 8.1342766 112 / 116 conP: 0.349 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG09081 cluster04 -> 1a8h01 7.3840625 212 / 116 conP: 0.191 CATH-ID: 1.10.730.10 Methionyl-tRNA synthetase. Chain: null. Synonym: metrs. Biological_uni VNG09081 cluster12 -> 2ng101 9.4504380 89 / 116 conP: 0.474 CATH-ID: 1.20.120.140 Signal sequence recognition protein ffh. Chain: null. Fragment: ng gtp --end-- VNG0911h one-of-top-five-correct: 0.275009960174693 CThresh: 6.769593 75 best_is: cluster05 VNG0911h cluster00 -> 1tfe02 6.1373296 45 / 89 conP: 0.267 CATH-ID: 1.20.12.10 Elongation factor ts. Chain: null. Fragment: ef-ts dimerization domain VNG0911h cluster01 -> 1fgjA2 6.5363721 230 / 89 conP: 0.087 CATH-ID: 1.20.850.10 Hydroxylamine oxidoreductase. Chain: a, b. Ec: 1.7.3.4 VNG0911h cluster02 -> 1vhbA0 6.5126601 135 / 89 conP: 0.166 CATH-ID: 1.10.490.10 Hemoglobin. Chain: a, b. Synonym: soluble cytochrome o. Engineered: ye VNG0911h cluster03 -> 1vin02 5.9223189 113 / 89 conP: 0.167 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O VNG0911h cluster04 -> 1a81A2 6.3777306 45 / 89 conP: 0.280 CATH-ID: 1.10.930.10 Syk kinase. Chain: a, c, e, g, i, k. Fragment: tandem sh2 domain. Engi VNG0911h cluster05 -> 1vhbA0 7.6877712 135 / 89 conP: 0.219 CATH-ID: 1.10.490.10 Hemoglobin. Chain: a, b. Synonym: soluble cytochrome o. Engineered: ye --end-- VNG09160 one-of-top-five-correct: 0.423862273487711 CThresh: 6.593540 75 best_is: cluster08 VNG09160 cluster00 -> 1hvxA 6.9563711 483 / 107 conP: 0.032 NO-CATH VNG09160 cluster01 -> 2scuB3 5.7736557 146 / 107 conP: 0.174 CATH-ID: 3.40.50.261 Succinyl-coa ligase. Chain: a, d. Synonym: scs. Engineered: yes. Biolo VNG09160 cluster02 -> 1ftrA2 6.7000706 149 / 107 conP: 0.213 CATH-ID: 3.30.70.550 Formylmethanofuran\:tetrahydromethanopterin formyltransferase. Chain: VNG09160 cluster03 -> 1yrnA0 6.3914577 49 / 107 conP: 0.322 CATH-ID: 1.10.10.60 Mating-type protein a-1. Chain: a. Domain: homeodomain. Synonym: mat a VNG09160 cluster04 -> 1ba500 6.6450636 53 / 107 conP: 0.333 CATH-ID: 1.10.10.60 Htrf1. Chain: null. Fragment: DNA-binding domain. Synonym: telomeric r VNG09160 cluster08 -> 1bpb02 9.0114571 114 / 107 conP: 0.398 CATH-ID: 3.30.460.10 DNA polymerase beta (beta polymerase) (apo, 31kd domain) --end-- VNG09230 one-of-top-five-correct: 0.353291065541439 CThresh: 7.035210 25 best_is: cluster17 VNG09230 cluster00 -> 1qgxA1 6.1197669 219 / 113 conP: 0.128 CATH-ID: 3.30.540.10 3',5'-adenosine bisphosphatase. Chain: a. Synonym: pap phosphatase. En VNG09230 cluster01 -> 1b3qA1 6.2286140 62 / 113 conP: 0.286 CATH-ID: 1.20.15.220 Chemotaxis protein chea. Chain: a, b. Fragment: dimerization domain, k VNG09230 cluster02 -> 1sctA0 6.4219567 149 / 113 conP: 0.198 CATH-ID: 1.10.490.10 Hemoglobin. Heterogen: carbon monoxide VNG09230 cluster03 -> 1qaxA1 5.8960055 110 / 113 conP: 0.213 CATH-ID: 3.30.70.420 3-hydroxy-3-methylglutaryl-coenzyme a reductase. Chain: a, b. Engineer VNG09230 cluster04 -> 1crkA2 5.8929132 279 / 113 conP: 0.087 CATH-ID: 3.30.590.10 Creatine kinase. Chain: a, b, c, d. Biological_unit: octamer VNG09230 cluster17 -> 1afrA0 8.2602579 345 / 113 conP: 0.111 CATH-ID: 1.10.620.20 Delta9 stearoyl-acyl carrier protein desaturase. Chain: a, b, c, d, e, --end-- VNG09231 one-of-top-five-correct: 0.400314055004651 CThresh: 3.879971 75 best_is: cluster19 VNG09231 cluster00 -> 1e7aA3 6.8080523 92 / 74 conP: 0.313 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG09231 cluster01 -> 1pmi02 8.0589819 136 / 74 conP: 0.302 CATH-ID: 1.10.441.10 Phosphomannose isomerase. Chain: null. Synonym: pmi. Ec: 5.3.1.8 VNG09231 cluster02 -> 1ihgA 6.8080523 364 / 74 conP: 0.034 NO-CATH VNG09231 cluster03 -> 1qsaA2 6.7990366 70 / 74 conP: 0.359 CATH-ID: 1.10.1240.20 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein VNG09231 cluster04 -> 1b5tA0 6.1948600 275 / 74 conP: 0.063 CATH-ID: 3.20.20.220 Methylenetetrahydrofolate reductase. Chain: a, b, c. Engineered: yes VNG09231 cluster19 -> 1ljwA 8.2661066 141 / 74 conP: 0.304 NO-CATH --end-- VNG09232 one-of-top-five-correct: 0.0196869646907708 CThresh: 6.803054 75 best_is: --end-- VNG09233 one-of-top-five-correct: 0.331898842397959 CThresh: 4.111512 75 best_is: cluster19 VNG09233 cluster00 -> 1fc3A0 6.9419288 119 / 79 conP: 0.279 CATH-ID: 1.10.10.60 Spo0a. Chain: a, b, c. Fragment: c-terminal domain. Synonym: sporulati VNG09233 cluster01 -> 1d1dA1 6.7406581 140 / 79 conP: 0.233 CATH-ID: 1.10.375.10 Capsid protein. Chain: a. Engineered: yes. Mutation: yes VNG09233 cluster02 -> 1fgs01 6.6361772 212 / 79 conP: 0.135 CATH-ID: 3.40.50.300 Folylpolyglutamate synthetase. Chain: null. Synonym: fpgs. Engineered: VNG09233 cluster03 -> 1qguA2 5.4177814 143 / 79 conP: 0.168 CATH-ID: 3.40.50.10 Nitrogenase molybdenum iron protein. Chain: a, c. Synonym: nitrogenase VNG09233 cluster04 -> 1a5902 7.4394910 108 / 79 conP: 0.330 CATH-ID: 1.10.230.10 Citrate synthase. Chain: null. Engineered: yes. Biological_unit: dimer VNG09233 cluster19 -> 1au1A0 7.4484410 166 / 79 conP: 0.228 CATH-ID: 1.20.120.210 Interferon-beta. Chain: a, b. Engineered: yes --end-- VNG09240 one-of-top-five-correct: 0.160144889920431 CThresh: 6.562912 75 best_is: cluster17 VNG09240 cluster00 -> 3pmgA1 5.7434573 197 / 69 conP: 0.054 CATH-ID: 3.40.460.10 Alpha-d-glucose-1,6-bisphosphate. Chain: a, b. Synonym: phosphoglucomu VNG09240 cluster01 -> 1bq7A0 5.1088143 186 / 69 conP: 0.051 CATH-ID: 3.40.30.10 Disulfide oxidoreductase. Chain: a, b, c, d, e, f. Synonym: dsba. Engi VNG09240 cluster02 -> 1cbf02 4.0510758 121 / 69 conP: 0.071 CATH-ID: 3.30.950.10 Cobalt-precorrin-4 transmethylase. Chain: null. Synonym: precorrin-4 m VNG09240 cluster03 -> 1aml00 3.7042156 40 / 69 conP: 0.135 CATH-ID: 4.10.230.10 Amyloid a4. Chain: null. Domain: residues 1 - 40. Engineered: yes VNG09240 cluster04 -> 1mkp00 5.7434573 144 / 69 conP: 0.089 CATH-ID: 3.90.190.10 Pyst1. Chain: null. Fragment: catalytic domain. Synonym: dual specific VNG09240 cluster17 -> 1b25A2 6.1665527 178 / 69 conP: 0.073 CATH-ID: 1.10.569.10 Formaldehyde ferredoxin oxidoreductase. Chain: a, b, c, d. Fragment: d --end-- VNG09250 one-of-top-five-correct: 0.327895519070322 CThresh: 6.985111 65 best_is: cluster08 VNG09250 cluster00 -> 1bxrA5 6.9903000 258 / 97 conP: 0.094 CATH-ID: 3.30.470.20 Carbamoyl-phosphate synthase. Chain: a, b, c, d, e, f, g, h. Engineere VNG09250 cluster01 -> 1a0p01 5.4230680 91 / 97 conP: 0.180 CATH-ID: 1.10.150.130 Site-specific recombinase xerd. Chain: null. Engineered: yes VNG09250 cluster02 -> 1iab00 4.9148345 200 / 97 conP: 0.080 CATH-ID: 3.40.390.10 Astacin with zinc replaced by cobalt(ii) VNG09250 cluster03 -> 1ewpA0 5.4509278 204 / 97 conP: 0.089 CATH-ID: 3.90.70.10 Cruzain. Chain: a. Fragment: catalytic domain. Synonym: cruzipain, cru VNG09250 cluster04 -> 1bip00 4.4984745 122 / 97 conP: 0.119 CATH-ID: 1.10.120.10 Bifunctional trypsin/alpha-amylase inhibitor (rbi) (nmr, 20 structures VNG09250 cluster08 -> 1pkm01 8.2922053 176 / 97 conP: 0.214 CATH-ID: 3.40.50.50 M1 pyruvate kinase. Chain: null. Synonym: pk. Ec: 2.7.1.40 --end-- VNG09251 one-of-top-five-correct: 0.370679082975681 CThresh: 7.929499 25 best_is: cluster10 VNG09251 cluster00 -> 1hp800 7.0542554 68 / 122 conP: 0.305 CATH-ID: 1.10.810.10 Hu-p8. Chain: null. Engineered: synthetic gene. Mutation: n-terminal i VNG09251 cluster01 -> 1eemA2 6.4969148 115 / 122 conP: 0.222 CATH-ID: 1.20.1050.10 Glutathione-s-transferase. Chain: a. Engineered: yes VNG09251 cluster02 -> 1pda03 6.6059185 87 / 122 conP: 0.257 CATH-ID: 3.30.160.40 Porphobilinogen deaminase VNG09251 cluster03 -> 1be3C0 7.0160955 378 / 122 conP: 0.068 CATH-ID: 1.20.810.10 Cytochrome bc1 complex. Chain: a, b, c, d, e, f, g, h, i, j, k. Synony VNG09251 cluster04 -> 1ecmA0 7.4257126 91 / 122 conP: 0.300 CATH-ID: 1.20.59.10 Endo-oxabicyclic transition state analogue. Chain: a, b. Domain: chori VNG09251 cluster10 -> 2ng101 8.6670305 89 / 122 conP: 0.383 CATH-ID: 1.20.120.140 Signal sequence recognition protein ffh. Chain: null. Fragment: ng gtp --end-- VNG0926h one-of-top-five-correct: 0.244599679626202 CThresh: 4.811025 75 best_is: cluster10 VNG0926h cluster00 -> 1hzdA 5.9576887 266 / 58 conP: 0.024 NO-CATH VNG0926h cluster01 -> 1qckA0 5.0521218 89 / 58 conP: 0.140 CATH-ID: 1.10.150.40 Barrier-to-autointegration factor. Chain: a, b. Engineered: yes VNG0926h cluster02 -> 1fokA1 5.9576887 281 / 58 conP: 0.020 CATH-ID: 3.90.241.10 Foki restriction endonuclease. Chain: a. Synonym: r.Foki. Engineered: VNG0926h cluster03 -> 1admA2 4.7305715 178 / 58 conP: 0.048 CATH-ID: 3.90.220.10 Adenine-n6-DNA-methyltransferase taqi. Chain: a, b. Ec: 2.1.1.72 VNG0926h cluster04 -> 1kpsB 5.7347991 156 / 58 conP: 0.081 NO-CATH VNG0926h cluster10 -> 1emuA2 7.0721368 85 / 58 conP: 0.234 CATH-ID: 1.10.167.10 Axin. Chain: a. Fragment: rgs-homologous domain. Engineered: yes. Aden --end-- VNG0932c one-of-top-five-correct: 0.189609420027196 CThresh: 9.462146 25 best_is: cluster03 VNG0932c cluster00 -> 1hlkA 4.7468684 227 / 129 conP: 0.067 NO-CATH VNG0932c cluster01 -> 1ordA2 5.5164775 313 / 129 conP: 0.054 CATH-ID: 3.40.640.10 Ornithine decarboxylase. Chain: a, b. Ec: 4.1.1.17 VNG0932c cluster02 -> 1khmA0 5.5334008 89 / 129 conP: 0.161 CATH-ID: 3.30.70.210 Hnrnp k. Chain: a. Fragment: c-terminal kh domain, residues 379-463 of VNG0932c cluster03 -> 1qftA0 6.6752678 175 / 129 conP: 0.143 CATH-ID: 2.40.128.20 Female-specific histamine binding protein 2. Chain: a. Engineered: yes VNG0932c cluster04 -> 1bgw01 4.5483231 43 / 129 conP: 0.156 CATH-ID: 2.30.35.40 Topoisomerase. Chain: null. Fragment: residues 410 - 1202. Engineered: --end-- VNG0934h one-of-top-five-correct: 0.274330425780056 CThresh: 3.184285 75 best_is: cluster18 VNG0934h cluster00 -> 1b4bA0 6.2203852 71 / 56 conP: 0.282 CATH-ID: 3.30.70.220 Arginine repressor. Chain: a, b, c. Fragment: oligomerization domain, VNG0934h cluster01 -> 1gtxA1 6.3590461 167 / 56 conP: 0.109 CATH-ID: 3.30.70.160 4-aminobutyrate aminotransferase. Chain: a, b, c, d. Synonym: gaba-at. VNG0934h cluster02 -> 1b4bA0 6.0807852 71 / 56 conP: 0.274 CATH-ID: 3.30.70.220 Arginine repressor. Chain: a, b, c. Fragment: oligomerization domain, VNG0934h cluster03 -> 1gtxA1 5.9142099 167 / 56 conP: 0.098 CATH-ID: 3.30.70.160 4-aminobutyrate aminotransferase. Chain: a, b, c, d. Synonym: gaba-at. VNG0934h cluster04 -> 1gtxA1 6.3590461 167 / 56 conP: 0.109 CATH-ID: 3.30.70.160 4-aminobutyrate aminotransferase. Chain: a, b, c, d. Synonym: gaba-at. VNG0934h cluster18 -> 1h70A0 6.8038823 255 / 56 conP: 0.044 CATH-ID: 3.75.10.10 Ng,ng-dimethylarginine dimethylaminohydrolase. Chain: a. Engineered: y --end-- VNG09380 one-of-top-five-correct: 0.570956255790805 CThresh: 5.239309 75 best_is: cluster19 VNG09380 cluster00 -> 1csh01 7.4919194 306 / 89 conP: 0.089 CATH-ID: 1.10.580.10 Citrate synthase complexed with oxaloacetate and amidocarboxymethyldet VNG09380 cluster01 -> 1npc01 7.0112522 150 / 89 conP: 0.224 CATH-ID: 3.10.170.10 Neutral protease VNG09380 cluster02 -> 1uby00 8.2713705 348 / 89 conP: 0.081 CATH-ID: 1.10.600.10 Farnesyl diphosphate synthase. Chain: null. Synonym: fps. Engineered: VNG09380 cluster03 -> 1moq02 7.8836231 148 / 89 conP: 0.274 CATH-ID: 3.40.50.1940 Glucosamine 6-phosphate synthase. Chain: null. Synonym: l-glutamine\:d VNG09380 cluster04 -> 1vib00 6.5944764 54 / 89 conP: 0.353 CATH-ID: 1.20.15.90 Neurotoxin b-iv. Chain: null VNG09380 cluster19 -> 1qspA0 10.429697 165 / 89 conP: 0.408 CATH-ID: 1.20.120.160 Ypd1. Chain: a, b. Engineered: yes. Biological_unit: monomer --end-- VNG09401 one-of-top-five-correct: 0.0393336172705286 CThresh: 3.256070 75 best_is: --end-- VNG09411 one-of-top-five-correct: 0.533026254726441 CThresh: 5.454156 75 best_is: cluster01 VNG09411 cluster00 -> 1b0pA2 7.6509448 157 / 96 conP: 0.265 CATH-ID: 3.40.50.920 Pyruvate-ferredoxin oxidoreductase. Chain: a, b. Biological_unit: homo VNG09411 cluster01 -> 1jfrA0 9.9476441 260 / 96 conP: 0.248 CATH-ID: 3.40.50.950 Lipase. Chain: a, b. Engineered: yes VNG09411 cluster02 -> 1a04A1 5.8938749 124 / 96 conP: 0.216 CATH-ID: 3.40.50.3000 Nitrate/nitrite response regulator protein narl. Chain: a, b. Fragment VNG09411 cluster03 -> 1schA1 5.3542454 158 / 96 conP: 0.156 CATH-ID: 1.10.520.10 Peanut peroxidase, major cationic isozyme. Chain: a, b. Synonym: pnp. VNG09411 cluster04 -> 1jmvA 6.8853783 140 / 96 conP: 0.246 NO-CATH --end-- VNG0943c one-of-top-five-correct: 0.279028431459352 CThresh: 6.960392 29 best_is: cluster04 VNG0943c cluster00 -> 1djnA2 6.3341583 168 / 114 conP: 0.181 CATH-ID: 3.40.50.1140 Trimethylamine dehydrogenase. Chain: a, b. Engineered: yes VNG0943c cluster01 -> 1d4tA0 5.6162294 104 / 114 conP: 0.211 CATH-ID: 3.30.505.10 T cell signal transduction molecule sap. Chain: a. Fragment: sh2 domai VNG0943c cluster02 -> 1dlxA0 4.1947586 120 / 114 conP: 0.138 CATH-ID: 3.30.920.10 Frataxin. Chain: a. Fragment: c-terminal domain (91-130). Engineered: VNG0943c cluster03 -> 3pte00 6.1580665 347 / 114 conP: 0.066 CATH-ID: 3.40.710.10 D-alanyl-d-alanine carboxypeptidase/transpeptidase VNG0943c cluster04 -> 1bmtA1 7.2599686 87 / 114 conP: 0.323 CATH-ID: 1.10.1240.10 Methionine synthase (b12-binding domains) --end-- VNG0945h one-of-top-five-correct: 0.476544717662969 CThresh: 6.971678 29 best_is: cluster00 VNG0945h cluster00 -> 1d1dA1 10.107735 140 / 92 conP: 0.353 CATH-ID: 1.10.375.10 Capsid protein. Chain: a. Engineered: yes. Mutation: yes VNG0945h cluster01 -> 1b8bA0 7.7810887 533 / 92 conP: 0.014 CATH-ID: 3.20.70.20 Anaerobic ribonucleotide-triphosphate reductase large chain. Chain: a. VNG0945h cluster02 -> 1i36A 6.4238782 258 / 92 conP: 0.071 NO-CATH VNG0945h cluster03 -> 1b91A0 6.2032021 118 / 92 conP: 0.173 CATH-ID: 1.20.920.10 Histone acetyltransferase. Chain: a. Fragment: bromodomain. Engineered VNG0945h cluster04 -> 1jf7A 6.8116526 281 / 92 conP: 0.067 NO-CATH --end-- VNG09461 one-of-top-five-correct: 0.310603589504713 CThresh: 4.264035 75 best_is: cluster04 VNG09461 cluster00 -> 1cfr00 6.1316796 283 / 67 conP: 0.039 CATH-ID: 3.40.91.10 Restriction endonuclease. Chain: null. Fragment: residues 1 - 283. Syn VNG09461 cluster01 -> 1h72C 5.8159671 296 / 67 conP: 0.031 NO-CATH VNG09461 cluster02 -> 1jwfA 6.7652840 139 / 67 conP: 0.180 NO-CATH VNG09461 cluster03 -> 2a3dA0 6.6696961 73 / 67 conP: 0.299 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes VNG09461 cluster04 -> 1bkdS1 7.5234252 189 / 67 conP: 0.140 CATH-ID: 1.20.870.10 H-ras. Chain: r. Fragment: residues 1-166. Synonym: p21. Engineered: y --end-- VNG09492 one-of-top-five-correct: 0.367117392039369 CThresh: 2.977572 100 best_is: cluster06 VNG09492 cluster00 -> 1nhp03 6.5326854 113 / 86 conP: 0.348 CATH-ID: 3.30.390.30 Nadh peroxidase (npx) mutant with cys 42 replaced by ala (c42a) VNG09492 cluster01 -> 3ladA3 5.7320065 122 / 86 conP: 0.283 CATH-ID: 3.30.390.30 Dihydrolipoamide dehydrogenase VNG09492 cluster02 -> 3ladA3 5.5357087 122 / 86 conP: 0.271 CATH-ID: 3.30.390.30 Dihydrolipoamide dehydrogenase VNG09492 cluster03 -> 3ladA3 6.5326854 122 / 86 conP: 0.332 CATH-ID: 3.30.390.30 Dihydrolipoamide dehydrogenase VNG09492 cluster04 -> 1gkxA 5.8138123 308 / 86 conP: 0.081 NO-CATH VNG09492 cluster06 -> 1es8A0 7.1991333 192 / 86 conP: 0.254 CATH-ID: 3.40.91.20 Restriction endonuclease bglii. Chain: a. Engineered: yes --end-- VNG09541 one-of-top-five-correct: 0.402951186457891 CThresh: 6.106771 75 best_is: cluster07 VNG09541 cluster00 -> 1dceA1 6.5359301 317 / 109 conP: 0.092 CATH-ID: 1.25.40.120 Rab geranylgeranyltransferase alpha subunit. Chain: a, c. Rab geranylg VNG09541 cluster01 -> 1dceA1 8.0350785 317 / 109 conP: 0.135 CATH-ID: 1.25.40.120 Rab geranylgeranyltransferase alpha subunit. Chain: a, c. Rab geranylg VNG09541 cluster02 -> 1b3uA0 6.2847241 588 / 109 conP: 0.016 CATH-ID: 1.25.30.30 Protein phosphatase pp2a. Chain: a, b. Fragment: 65 kd regulatory subu VNG09541 cluster03 -> 1bby00 6.1665527 69 / 109 conP: 0.308 CATH-ID: 1.10.10.10 Rap30. Chain: null. Fragment: DNA-binding domain. Synonym: transcripti VNG09541 cluster04 -> 1pdnC2 5.8656823 55 / 109 conP: 0.309 CATH-ID: 1.10.10.10 Prd paired domain. Chain: c. DNA. Chain: a, b VNG09541 cluster07 -> 1qsaA1 8.5090597 363 / 109 conP: 0.117 CATH-ID: 1.25.20.10 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein --end-- VNG0959h one-of-top-five-correct: 0.200836637500083 CThresh: 6.460579 75 best_is: cluster00 VNG0959h cluster00 -> 1ptvA0 6.6709875 297 / 78 conP: 0.040 CATH-ID: 3.90.190.10 Protein tyrosine phosphatase 1b. Chain: a. Engineered: yes. Mutation: VNG0959h cluster01 -> 1brmA2 4.5523173 174 / 78 conP: 0.064 CATH-ID: 3.30.550.10 Aspartate-semialdehyde dehydrogenase. Chain: a, b, c. Synonym: asadh, VNG0959h cluster02 -> 1eluA1 4.5891855 115 / 78 conP: 0.105 CATH-ID: 3.30.70.160 L-cysteine/l-cystinE C-s lyase. Chain: a, b. Fragment: 11 residues of VNG0959h cluster03 -> 1rlr04 3.9941311 238 / 78 conP: 0.032 CATH-ID: 3.90.188.10 Ribonucleotide reductase protein r1. Chain: null. Synonym: ribonucleos VNG0959h cluster04 -> 1dxxA1 5.8555831 113 / 78 conP: 0.147 CATH-ID: 1.10.418.10 Dystrophin. Chain: a, b, c, d. Fragment: actin-binding. Engineered: ye --end-- VNG09641 one-of-top-five-correct: 0.641045486462563 CThresh: 2.452074 100 best_is: cluster13 VNG09641 cluster00 -> 1gajA0 5.3989368 253 / 70 conP: 0.072 CATH-ID: 3.40.50.300 High-affinity branched chain amino acid transport atp-binding protein. VNG09641 cluster01 -> 1furA1 5.6086329 134 / 70 conP: 0.213 CATH-ID: 1.10.275.10 FumarasE C. Chain: a, b. Synonym: fumc. Engineered: yes. Mutation: h18 VNG09641 cluster02 -> 1bl0A2 5.2109993 60 / 70 conP: 0.336 CATH-ID: 1.10.10.60 DNA (5'- d( Gp Gp Gp Gp Ap Tp Tp Tp Ap Gp Cp Ap Ap Ap Ap Cp Gp Tp Gp G VNG09641 cluster03 -> 1jkw01 5.7082128 176 / 70 conP: 0.155 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y VNG09641 cluster04 -> 1e7aA2 5.3989368 90 / 70 conP: 0.284 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG09641 cluster13 -> 1b9nA1 10.403551 102 / 70 conP: 0.598 CATH-ID: 1.10.10.10 Mode. Chain: a, b. Engineered: yes --end-- VNG09651 one-of-top-five-correct: 0.362350971871384 CThresh: 2.170174 100 best_is: cluster14 VNG09651 cluster00 -> 1nkl00 6.1390610 78 / 54 conP: 0.296 CATH-ID: 1.10.225.10 Nk-lysin. Chain: null. Other_details: active by membrane-binding VNG09651 cluster01 -> 1dgnA0 6.1390610 89 / 54 conP: 0.267 CATH-ID: 1.10.533.10 Iceberg (protease inhibitor). Chain: a. Fragment: residues 2-90. Engin VNG09651 cluster02 -> 1dgnA0 6.5944764 89 / 54 conP: 0.293 CATH-ID: 1.10.533.10 Iceberg (protease inhibitor). Chain: a. Fragment: residues 2-90. Engin VNG09651 cluster03 -> 1geo01 5.6836457 166 / 54 conP: 0.105 CATH-ID: 3.30.413.10 Sulfite reductase hemoprotein. Chain: null. Synonym: sirhp. Engineered VNG09651 cluster04 -> 1ig6A0 5.2282304 107 / 54 conP: 0.181 CATH-ID: 1.10.150.60 Modulator recognition factor 2. Chain: a. Fragment: DNA-binding domain VNG09651 cluster14 -> 1alo02 7.5053070 119 / 54 conP: 0.268 CATH-ID: 1.10.150.120 Aldehyde oxidoreductase. Chain: null. Synonym: molybdenum iron sulfur --end-- VNG09690 one-of-top-five-correct: 0.296462761898061 CThresh: 3.749512 75 best_is: cluster04 VNG09690 cluster00 -> 1serA1 5.6792616 53 / 70 conP: 0.317 CATH-ID: 1.20.15.10 Seryl-tRNA synthetase complexed with tRNA-ser 2 (gga anticodon) VNG09690 cluster01 -> 1a6dA1 5.4975816 244 / 70 conP: 0.061 CATH-ID: 1.10.560.10 Thermosome. Chain: a, b. Biological_unit: hexadecamer VNG09690 cluster02 -> 1a6dA1 5.7082128 244 / 70 conP: 0.065 CATH-ID: 1.10.560.10 Thermosome. Chain: a, b. Biological_unit: hexadecamer VNG09690 cluster03 -> 1ekvA 5.4975816 365 / 70 conP: 0.019 NO-CATH VNG09690 cluster04 -> 1al302 7.0386290 136 / 70 conP: 0.230 CATH-ID: 3.40.190.60 Cys regulon transcriptional activator cysb. Chain: null. Fragment: cof --end-- VNG09711 one-of-top-five-correct: 0.0189543044914233 CThresh: 7.639008 25 best_is: --end-- VNG0982c one-of-top-five-correct: 0.171293424367701 CThresh: 6.989495 74 best_is: cluster14 VNG0982c cluster00 -> 1eccA2 4.7911437 137 / 95 conP: 0.113 CATH-ID: 3.40.50.90 Glutamine phosphoribosylpyrophosphate amidotransferase. Chain: a, b. B VNG0982c cluster01 -> 3psg01 5.3787763 165 / 95 conP: 0.109 CATH-ID: 2.40.70.10 Pepsinogen VNG0982c cluster02 -> 1a4801 4.2278503 111 / 95 conP: 0.115 CATH-ID: 3.30.200.20 Phosphoribosylaminoimidazole-succinocarboxamide synthase. Chain: null. VNG0982c cluster03 -> 1oacA1 4.5975739 80 / 95 conP: 0.154 CATH-ID: 3.30.457.10 Copper amine oxidase. Chain: a, b. Ec: 1.4.3.6 VNG0982c cluster04 -> 1qj2C1 4.0896920 54 / 95 conP: 0.160 CATH-ID: 3.30.43.10 Carbon monoxide dehydrogenase. Chain: a, g. Carbon monoxide dehydrogen VNG0982c cluster14 -> 1dxrH2 5.9888002 139 / 95 conP: 0.150 CATH-ID: 3.90.50.10 Photosynthetic reaction center cytochromE C subun chain: c. Photosynth --end-- VNG09832 one-of-top-five-correct: 0.374533060229329 CThresh: 5.681110 75 best_is: cluster17 VNG09832 cluster00 -> 1bt3A 5.2858508 336 / 91 conP: 0.038 NO-CATH VNG09832 cluster01 -> 1qaxA1 6.9664098 110 / 91 conP: 0.268 CATH-ID: 3.30.70.420 3-hydroxy-3-methylglutaryl-coenzyme a reductase. Chain: a, b. Engineer VNG09832 cluster02 -> 2ifeA0 7.2825408 91 / 91 conP: 0.317 CATH-ID: 3.30.110.10 Translation initiation factor if3. Chain: a. Fragment: ribosome-bindin VNG09832 cluster03 -> 1djnA2 6.5128832 168 / 91 conP: 0.170 CATH-ID: 3.40.50.1140 Trimethylamine dehydrogenase. Chain: a, b. Engineered: yes VNG09832 cluster04 -> 1cxsA2 6.1780598 246 / 91 conP: 0.093 CATH-ID: 3.40.228.10 Dimethylsulfoxide reductase. Chain: a. Synonym: dmso reductase. Bis(mo VNG09832 cluster17 -> 1f46A 8.3983771 139 / 91 conP: 0.307 NO-CATH --end-- VNG0987h one-of-top-five-correct: 0.212708187817358 CThresh: 9.646347 25 best_is: cluster10 VNG0987h cluster00 -> 1mbe00 4.8545778 52 / 137 conP: 0.166 CATH-ID: 1.10.10.60 Myb proto-oncogene protein. Domain: DNA-binding domain repeat 1. Other VNG0987h cluster01 -> 1b7yB4 4.7449874 74 / 137 conP: 0.147 CATH-ID: 3.30.56.20 Phenylalanyl-tRNA synthetase. Chain: a. Synonym: phers. Phenylalanyl-t VNG0987h cluster02 -> 3tgl00 6.6333973 265 / 137 conP: 0.100 CATH-ID: 3.40.50.950 Triacylglycerol acylhydrolase VNG0987h cluster03 -> 5eat02 5.5971055 371 / 137 conP: 0.046 CATH-ID: 1.10.615.10 5-epi-aristolochene synthase. Chain: null. Synonym: 5-epi-aristolochen VNG0987h cluster04 -> 1ec5A0 5.7383489 48 / 137 conP: 0.207 CATH-ID: 1.20.15.30 Four-helix bundle model. Chain: a, b, c. Engineered: yes. Other_detail VNG0987h cluster10 -> 1fuyB 6.9705010 393 / 137 conP: 0.060 NO-CATH --end-- VNG0988h one-of-top-five-correct: 0.307282931665253 CThresh: 6.105446 75 best_is: cluster09 VNG0988h cluster00 -> 1a5t03 5.4177814 116 / 79 conP: 0.140 CATH-ID: 1.20.272.10 Delta prime. Chain: null. Synonym: holb. Engineered: yes. Biological_u VNG0988h cluster01 -> 1fteA 5.5453700 116 / 79 conP: 0.145 NO-CATH VNG0988h cluster02 -> 1ayx00 7.2453751 492 / 79 conP: 0.010 CATH-ID: 1.50.10.30 Glucoamylase. Chain: null. Engineered: yes VNG0988h cluster03 -> 1e52A0 6.2715493 56 / 79 conP: 0.262 CATH-ID: 4.10.860.10 Excinuclease abc subunit . Chain: a, b. Fragment: c-terminal domain re VNG0988h cluster04 -> 1gcb_ 7.0423091 452 / 79 conP: 0.013 NO-CATH VNG0988h cluster09 -> 4crxA2 8.0427002 111 / 79 conP: 0.267 CATH-ID: 1.10.150.130 Cre recombinase. Chain: a, b. Engineered: yes. Mutation: r173k. Biolog --end-- VNG09890 one-of-top-five-correct: 0.260640711195052 CThresh: 7.551268 25 best_is: cluster08 VNG09890 cluster00 -> 1qmmA5 5.2683639 194 / 108 conP: 0.099 CATH-ID: 1.10.1070.11 Phosphatidylinositol 3-kinase catalytic subunit. Chain: a. Fragment: p VNG09890 cluster01 -> 1aisB2 5.6400788 94 / 108 conP: 0.189 CATH-ID: 1.10.472.10 Tata-binding protein. Chain: a. Fragment: residues 1 - 181. Synonym: t VNG09890 cluster02 -> 1f1sA 6.7149935 814 / 108 conP: 0.003 NO-CATH VNG09890 cluster03 -> 1mtyB0 5.7434997 384 / 108 conP: 0.035 CATH-ID: 1.10.620.20 Methane monooxygenase hydroxylase. Chain: d, e, b, c, g, h. Biological VNG09890 cluster04 -> 1fjgI0 4.5001901 127 / 108 conP: 0.119 CATH-TRUNC VNG09890 cluster08 -> 1gai00 7.4089941 472 / 108 conP: 0.032 CATH-ID: 1.50.10.30 Glucoamylase-471. Chain: null. Fragment: residues 1-471. Synonym: gluc --end-- VNG0990h one-of-top-five-correct: 0.282325640355853 CThresh: 3.756867 75 best_is: cluster10 VNG0990h cluster00 -> 1gdtA3 5.2792900 43 / 56 conP: 0.271 CATH-ID: 1.10.10.60 Gamma-delta resolvase. Chain: a, b. Synonym: gd resolvase. Engineered: VNG0990h cluster01 -> 14psA0 6.4967938 226 / 56 conP: 0.051 CATH-ID: 1.20.190.20 14-3-3 protein zeta/delta. Chain: a, b. Engineered: yes. Biological_un VNG0990h cluster02 -> 1qs2A2 5.3705710 198 / 56 conP: 0.052 CATH-ID: 2.30.100.10 Adp-ribosyltransferase. Chain: a. Fragment: mature vip2. Engineered: y VNG0990h cluster03 -> 1eyvA0 7.0263004 131 / 56 conP: 0.170 CATH-ID: 1.10.940.10 N-utilizing substance protein b homolog. Chain: a, b. Synonym: nusb pr VNG0990h cluster04 -> 1aoiD0 6.0463047 99 / 56 conP: 0.188 CATH-ID: 1.10.20.10 Histone h3. Chain: a, e. Engineered: yes. Histone h4. Chain: b, f. Eng VNG0990h cluster10 -> 1aa7A2 7.1725275 78 / 56 conP: 0.293 CATH-ID: 1.10.10.180 Influenza virus matrix protein. Chain: a, b. Biological_unit: dimer --end-- VNG0991h one-of-top-five-correct: 0.447422145446868 CThresh: 7.120305 25 best_is: cluster11 VNG0991h cluster00 -> 1bwoA0 8.6064435 90 / 112 conP: 0.394 CATH-ID: 1.10.110.10 Nonspecific lipid-transfer protein. Chain: a, b. Synonym: ns-ltp1 VNG0991h cluster01 -> 1fapB0 7.2428431 95 / 112 conP: 0.298 CATH-ID: 1.20.120.150 Fk506-binding protein. Chain: a. Synonym: fkbp12. Engineered: yes. Fra VNG0991h cluster02 -> 1bwoA0 6.6134831 90 / 112 conP: 0.268 CATH-ID: 1.10.110.10 Nonspecific lipid-transfer protein. Chain: a, b. Synonym: ns-ltp1 VNG0991h cluster03 -> 1dik02 7.0568501 63 / 112 conP: 0.330 CATH-ID: 1.10.189.10 Pyruvate phosphate dikinase. Chain: null. Synonym: ppdk. Engineered: y VNG0991h cluster04 -> 1eyvA0 6.9103301 131 / 112 conP: 0.236 CATH-ID: 1.10.940.10 N-utilizing substance protein b homolog. Chain: a, b. Synonym: nusb pr VNG0991h cluster11 -> 1a36A5 9.3988839 72 / 112 conP: 0.477 CATH-ID: 1.20.15.30 Topoisomerase i. Chain: a. Fragment: core domain and c-terminal domain --end-- VNG0994h one-of-top-five-correct: 0.380956181585743 CThresh: 2.431006 100 best_is: cluster15 VNG0994h cluster00 -> 1vin01 6.7108836 139 / 66 conP: 0.242 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O VNG0994h cluster01 -> 1efuB2 6.2820806 86 / 66 conP: 0.331 CATH-ID: 3.50.13.10 Elongation factor tu. Chain: a, c. Synonym: elongation factor for tran VNG0994h cluster02 -> 1bu2A2 7.1396865 102 / 66 conP: 0.348 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG0994h cluster03 -> 1psrA0 6.9252851 100 / 66 conP: 0.339 CATH-ID: 1.10.238.10 Psoriasin. Chain: a, b. Synonym: s100a7. Engineered: yes. Other_detail VNG0994h cluster04 -> 1psrA0 6.4964821 100 / 66 conP: 0.312 CATH-ID: 1.10.238.10 Psoriasin. Chain: a, b. Synonym: s100a7. Engineered: yes. Other_detail VNG0994h cluster15 -> 1c9bA2 7.5684895 106 / 66 conP: 0.367 CATH-ID: 1.10.472.10 General transcription factor iib. Chain: a, e, i, m, q. Fragment: c-te --end-- VNG0995h one-of-top-five-correct: 0.242936282655148 CThresh: 5.069381 75 best_is: cluster03 VNG0995h cluster00 -> 1jkw02 5.8318584 101 / 61 conP: 0.153 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y VNG0995h cluster01 -> 1cuk02 6.4018579 76 / 61 conP: 0.221 CATH-ID: 1.10.150.30 Ruva protein. Chain: null. Engineered: yes VNG0995h cluster02 -> 1ef4A0 5.4127582 55 / 61 conP: 0.213 CATH-ID: 1.10.10.60 DNA-directed RNA polymerase. Chain: a. Fragment: subunit rpb10. Synony VNG0995h cluster03 -> 1t7pA4 7.0962909 101 / 61 conP: 0.206 CATH-ID: 1.10.473.10 DNA polymerase. Chain: a. Engineered: yes. Mutation: del(118-123). Thi VNG0995h cluster04 -> 1ef4A0 6.0921444 55 / 61 conP: 0.248 CATH-ID: 1.10.10.60 DNA-directed RNA polymerase. Chain: a. Fragment: subunit rpb10. Synony --end-- VNG09962 one-of-top-five-correct: 0.530223260006704 CThresh: 4.122451 75 best_is: cluster00 VNG09962 cluster00 -> 1dq3A3 9.8366043 87 / 73 conP: 0.516 CATH-ID: 3.10.28.10 Endonuclease. Chain: a. Engineered: yes VNG09962 cluster01 -> 1cd1A2 7.3647714 95 / 73 conP: 0.326 CATH-ID: 2.60.40.10 Cd1. Chain: a, b, c, d. Fragment: alpha1, alpha2, alpha3, beta2-microg VNG09962 cluster02 -> 1dq3A4 6.9344902 114 / 73 conP: 0.263 CATH-ID: 3.10.28.10 Endonuclease. Chain: a. Engineered: yes VNG09962 cluster03 -> 1vdeA3 9.8366043 109 / 73 conP: 0.463 CATH-ID: 3.10.28.10 Pi-scei. Chain: a, b. Engineered: yes VNG09962 cluster04 -> 1lba00 6.6215251 146 / 73 conP: 0.193 CATH-ID: 3.40.80.10 Lysozyme mutant with ala 6 replaced by lys and residues 2 - 5 deleted --end-- VNG09963 one-of-top-five-correct: 0.435410192881373 CThresh: 5.247408 75 best_is: cluster16 VNG09963 cluster00 -> 1adjA2 5.8938749 96 / 122 conP: 0.329 CATH-ID: 3.40.50.800 Histidyl-tRNA synthetase. Chain: a, b, c, d. Biological_unit: active a VNG09963 cluster01 -> 1moq02 6.5038855 148 / 122 conP: 0.303 CATH-ID: 3.40.50.1940 Glucosamine 6-phosphate synthase. Chain: null. Synonym: l-glutamine\:d VNG09963 cluster02 -> 1scuA2 6.2346912 166 / 122 conP: 0.266 CATH-ID: 3.40.50.261 Succinyl-coa synthetase (succinate-coa ligase) (adp-forming) VNG09963 cluster03 -> 1cpy02 5.8484850 72 / 122 conP: 0.358 CATH-ID: 1.20.1030.10 Serine carboxypeptidase. Chain: null. Mutation: e65a, e145a VNG09963 cluster04 -> 1qqcA2 4.9919617 252 / 122 conP: 0.134 CATH-ID: 3.30.420.10 DNA polymerase ii. Chain: a. Engineered: yes. Biological_unit: monomer VNG09963 cluster16 -> 1enh00 8.1884300 54 / 122 conP: 0.548 CATH-ID: 1.10.10.60 Engrailed homeodomain --end-- VNG09970 one-of-top-five-correct: 0.341685293953187 CThresh: 6.633031 75 best_is: cluster03 VNG09970 cluster00 -> 1k94A 5.8028594 165 / 106 conP: 0.155 NO-CATH VNG09970 cluster01 -> 1c17M0 5.3116931 142 / 106 conP: 0.156 CATH-ID: 1.20.120.220 Atp synthase subunit c. Chain: a, b, c, d, e, f, g, h, i, j, k, l. Eng VNG09970 cluster02 -> 2phy00 4.9422248 125 / 106 conP: 0.157 CATH-ID: 3.30.450.20 Photoactive yellow protein. Chain: null. Synonym: pyp VNG09970 cluster03 -> 1cbzA1 8.0971255 315 / 106 conP: 0.116 CATH-ID: 3.40.605.10 Aldehyde dehydrogenase. Chain: a, b, c, d. Synonym: aldh. Engineered: VNG09970 cluster04 -> 1af800 6.4285971 86 / 106 conP: 0.270 CATH-ID: 1.10.1200.10 Actinorhodin polyketide synthase acyl carrier protein. Chain: null. Sy --end-- VNG0999h one-of-top-five-correct: 0.461502429047356 CThresh: 5.342234 75 best_is: cluster18 VNG0999h cluster00 -> 1a6dA1 7.1327007 244 / 88 conP: 0.120 CATH-ID: 1.10.560.10 Thermosome. Chain: a, b. Biological_unit: hexadecamer VNG0999h cluster01 -> 1a8h01 8.4989962 212 / 88 conP: 0.206 CATH-ID: 1.10.730.10 Methionyl-tRNA synthetase. Chain: null. Synonym: metrs. Biological_uni VNG0999h cluster02 -> 1eg3A3 6.1638458 82 / 88 conP: 0.271 CATH-ID: 1.10.238.60 Dystrophin. Chain: a. Fragment: ww domain. Engineered: yes VNG0999h cluster03 -> 1lre00 7.5277256 81 / 88 conP: 0.358 CATH-ID: 1.20.81.10 Receptor-associated protein. Chain: null. Fragment: n-terminal domain, VNG0999h cluster04 -> 1bgvA3 7.1432729 76 / 88 conP: 0.341 CATH-ID: 1.10.285.10 Glutamate dehydrogenase. Chain: a. Biological_unit: homohexamer VNG0999h cluster18 -> 1e7aA5 9.2944826 112 / 88 conP: 0.420 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes --end-- VNG1000h one-of-top-five-correct: 0.342304932923686 CThresh: 3.895565 75 best_is: cluster04 VNG1000h cluster00 -> 1b3uA0 6.8417742 588 / 68 conP: 0.002 CATH-ID: 1.25.30.30 Protein phosphatase pp2a. Chain: a, b. Fragment: 65 kd regulatory subu VNG1000h cluster01 -> 1c5a00 6.7554423 65 / 68 conP: 0.345 CATH-ID: 1.20.91.20 Des-arg==74==-complement c5a VNG1000h cluster02 -> 1ryp20 6.9049213 233 / 68 conP: 0.089 CATH-ID: 3.60.20.10 20s proteasome. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, VNG1000h cluster03 -> 1c9bA2 6.8417742 106 / 68 conP: 0.261 CATH-ID: 1.10.472.10 General transcription factor iib. Chain: a, e, i, m, q. Fragment: c-te VNG1000h cluster04 -> 1vin02 7.7284692 113 / 68 conP: 0.298 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O --end-- VNG1003h one-of-top-five-correct: 0.262751048377623 CThresh: 6.084705 75 best_is: cluster08 VNG1003h cluster00 -> 1juqA 4.3583988 148 / 73 conP: 0.073 NO-CATH VNG1003h cluster01 -> 1qsaA2 5.3990051 70 / 73 conP: 0.183 CATH-ID: 1.10.1240.20 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein VNG1003h cluster02 -> 1gnwA2 5.8142472 125 / 73 conP: 0.130 CATH-ID: 1.20.1050.10 Glutathione s-transferase. Chain: a, b. Engineered: yes. Biological_un VNG1003h cluster03 -> 1mhlC0 3.7344637 466 / 73 conP: 0.003 CATH-ID: 1.10.640.10 Myeloperoxidase. Chain: a, c, b, d. Other_details: isoform c VNG1003h cluster04 -> 1e20A0 4.1068389 185 / 73 conP: 0.049 CATH-ID: 3.40.50.1950 Halotolerance protein hal3. Chain: a. Synonym: hal3. Engineered: yes VNG1003h cluster08 -> 1nfiE0 7.5707574 213 / 73 conP: 0.096 CATH-ID: 1.25.40.20 Nf-kappa-b p65. Chain: a, c. Engineered: yes. Nf-kappa-b p50. Chain: b --end-- VNG1005h one-of-top-five-correct: 0.274205251148147 CThresh: 4.767811 75 best_is: cluster15 VNG1005h cluster00 -> 1qqnA4 6.3781003 84 / 69 conP: 0.245 CATH-ID: 3.90.640.10 D206s mutant of bovine 70 kilodalton heat shock protein. Chain: a. Fra VNG1005h cluster01 -> 1jwbB 6.6878023 240 / 69 conP: 0.068 NO-CATH VNG1005h cluster02 -> 1adjA2 5.1088143 96 / 69 conP: 0.166 CATH-ID: 3.40.50.800 Histidyl-tRNA synthetase. Chain: a, b, c, d. Biological_unit: active a VNG1005h cluster03 -> 1f5mA0 7.2242911 176 / 69 conP: 0.140 CATH-ID: 3.30.450.40 Gaf. Chain: a, b. Engineered: yes VNG1005h cluster04 -> 1jd3A 7.0127434 164 / 69 conP: 0.148 NO-CATH VNG1005h cluster15 -> 1adjA2 7.2242911 96 / 69 conP: 0.268 CATH-ID: 3.40.50.800 Histidyl-tRNA synthetase. Chain: a, b, c, d. Biological_unit: active a --end-- VNG1007h one-of-top-five-correct: 0.438092574145966 CThresh: 2.421169 100 best_is: cluster18 VNG1007h cluster00 -> 1guxB0 6.9252851 141 / 66 conP: 0.250 CATH-ID: 1.10.472.10 Retinoblastoma protein. Chain: a, b. Fragment: pocket domain. Engineer VNG1007h cluster01 -> 1psrA0 6.7108836 100 / 66 conP: 0.326 CATH-ID: 1.10.238.10 Psoriasin. Chain: a, b. Synonym: s100a7. Engineered: yes. Other_detail VNG1007h cluster02 -> 1aisB1 6.7108836 99 / 66 conP: 0.328 CATH-ID: 1.10.472.10 Tata-binding protein. Chain: a. Fragment: residues 1 - 181. Synonym: t VNG1007h cluster03 -> 1vin01 6.7108836 139 / 66 conP: 0.242 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O VNG1007h cluster04 -> 1guxB0 7.1396865 141 / 66 conP: 0.261 CATH-ID: 1.10.472.10 Retinoblastoma protein. Chain: a, b. Fragment: pocket domain. Engineer VNG1007h cluster18 -> 1f7cA0 8.2116939 182 / 66 conP: 0.238 CATH-ID: 1.10.555.10 Rhogap protein. Chain: a. Fragment: gtpase activating protein (gap) fo --end-- VNG10130 one-of-top-five-correct: 0.509711785294403 CThresh: 7.253371 25 best_is: cluster05 VNG10130 cluster00 -> 1uby00 7.7926557 348 / 141 conP: 0.159 CATH-ID: 1.10.600.10 Farnesyl diphosphate synthase. Chain: null. Synonym: fps. Engineered: VNG10130 cluster01 -> 1qsaA2 9.0783115 70 / 141 conP: 0.522 CATH-ID: 1.10.1240.20 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein VNG10130 cluster02 -> 1ocrE0 7.4139705 109 / 141 conP: 0.357 CATH-ID: 1.25.40.40 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, VNG10130 cluster03 -> 1jkw02 7.1505110 101 / 141 conP: 0.349 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y VNG10130 cluster04 -> 1b3uA0 9.0086784 588 / 141 conP: 0.075 CATH-ID: 1.25.30.30 Protein phosphatase pp2a. Chain: a, b. Fragment: 65 kd regulatory subu VNG10130 cluster05 -> 1jwfA 9.4831258 139 / 141 conP: 0.465 NO-CATH --end-- VNG1015h one-of-top-five-correct: 0.327241573003003 CThresh: 8.425313 25 best_is: cluster02 VNG1015h cluster00 -> 1lci04 5.3122002 99 / 123 conP: 0.168 CATH-ID: 3.30.300.30 Luciferase. Chain: null. Engineered: yes VNG1015h cluster01 -> 1dqaA2 7.2162395 216 / 123 conP: 0.152 CATH-ID: 3.90.770.10 Hmg-coa reductase. Chain: a, b, c, d. Fragment: catalytic portion. Eng VNG1015h cluster02 -> 1aep00 8.3451941 153 / 123 conP: 0.262 CATH-ID: 1.20.120.20 Apolipophorin iii VNG1015h cluster03 -> 1e7aA2 6.0121498 90 / 123 conP: 0.206 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG1015h cluster04 -> 1qmgA2 6.0384693 293 / 123 conP: 0.076 CATH-ID: 1.10.572.10 Acetohydroxy-acid isomeroreductase. Chain: a, b, c, d. Synonym: keto-a --end-- VNG10200 one-of-top-five-correct: 0.58226859937764 CThresh: 7.657195 25 best_is: cluster08 VNG10200 cluster00 -> 1ayx00 9.6212960 492 / 116 conP: 0.067 CATH-ID: 1.50.10.30 Glucoamylase. Chain: null. Engineered: yes VNG10200 cluster01 -> 2reb02 6.5800857 59 / 116 conP: 0.288 CATH-ID: 3.30.250.10 Reca protein VNG10200 cluster02 -> 2eiaA1 7.0638168 132 / 116 conP: 0.231 CATH-ID: 1.10.375.10 Eiav capsid protein p26. Chain: a, b. Engineered: yes VNG10200 cluster03 -> 1f5xA0 8.1315296 208 / 116 conP: 0.205 CATH-ID: 1.20.900.10 Rho-gef vav. Chain: a. Fragment: dbl homology domain. Engineered: yes VNG10200 cluster04 -> 1rpo00 8.2468258 61 / 116 conP: 0.393 CATH-ID: 1.20.15.200 Rop (cole1 repressor of primer) mutant with ala inserted on either sid VNG10200 cluster08 -> 1e2aA0 11.038290 102 / 116 conP: 0.531 CATH-ID: 1.20.1040.30 Enzyme iia. Chain: a, b, c. Synonym: enzyme iii, lactose-specific iia --end-- VNG10201 one-of-top-five-correct: 0.449456156861032 CThresh: 6.986894 41 best_is: cluster14 VNG10201 cluster00 -> 1ytfD1 6.4160811 53 / 127 conP: 0.341 CATH-ID: 1.20.15.160 Yeast tata-box binding protein. Chain: a. Fragment: c-terminal 180 ami VNG10201 cluster01 -> 1dlwA0 7.6549339 116 / 127 conP: 0.343 CATH-ID: 1.10.490.10 Hemoglobin. Chain: a. Engineered: yes VNG10201 cluster02 -> 1bha00 7.1876869 67 / 127 conP: 0.374 CATH-ID: 1.20.15.140 Bacteriorhodopsin (proteolytic fragment 1 - 71, solubilized in sds mic VNG10201 cluster03 -> 1jgjA0 7.1746704 217 / 127 conP: 0.207 CATH-ID: 1.20.85.10 Sensory rhodopsin ii. Chain: a. Engineered: yes VNG10201 cluster04 -> 1ag200 7.0971656 103 / 127 conP: 0.323 CATH-ID: 1.10.790.10 Major prion protein. Chain: null. Fragment: domain 121 - 231. Synonym: VNG10201 cluster14 -> 1ixmA1 9.0193370 59 / 127 conP: 0.514 CATH-ID: 1.20.15.100 Sporulation response regulatory protein. Chain: a, b. Synonym: spo0b. --end-- VNG10350 one-of-top-five-correct: 0.329265342854247 CThresh: 6.975518 28 best_is: cluster06 VNG10350 cluster00 -> 1nhp02 5.6321720 150 / 96 conP: 0.130 CATH-ID: 3.50.50.60 Nadh peroxidase (npx) mutant with cys 42 replaced by ala (c42a) VNG10350 cluster01 -> 1gnwA1 6.9416532 85 / 96 conP: 0.260 CATH-ID: 3.40.30.10 Glutathione s-transferase. Chain: a, b. Engineered: yes. Biological_un VNG10350 cluster02 -> 1qb7A0 6.9948004 236 / 96 conP: 0.106 CATH-ID: 3.40.50.90 Adenine phosphoribosyltransferase. Chain: a. Synonym: aprt. Engineered VNG10350 cluster03 -> 1a1s02 5.3542454 160 / 96 conP: 0.114 CATH-ID: 3.40.50.1370 Ornithine carbamoyltransferase. Chain: null. Synonym: ornithine transc VNG10350 cluster04 -> 1eemA1 5.4036472 122 / 96 conP: 0.147 CATH-ID: 3.40.30.10 Glutathione-s-transferase. Chain: a. Engineered: yes VNG10350 cluster06 -> 2pgd01 8.3276230 180 / 96 conP: 0.208 CATH-ID: 3.40.50.720 6-phosphogluconate dehydrogenase (6-pgdh) --end-- VNG10351 one-of-top-five-correct: 0.185446610956292 CThresh: 4.566544 75 best_is: cluster04 VNG10351 cluster00 -> 1b25A2 5.4713351 178 / 59 conP: 0.065 CATH-ID: 1.10.569.10 Formaldehyde ferredoxin oxidoreductase. Chain: a, b, c, d. Fragment: d VNG10351 cluster01 -> 1mpgA3 5.0848658 52 / 59 conP: 0.217 CATH-ID: 1.10.15.10 3-methyladenine DNA glycosylase ii. Chain: a, b. Synonym: alka. Engine VNG10351 cluster02 -> 1aua02 5.2495850 83 / 59 conP: 0.167 CATH-ID: 1.10.8.20 Phosphatidylinositol transfer protein sec14p. Chain: null. Engineered: VNG10351 cluster03 -> 1qckA0 5.2343985 89 / 59 conP: 0.157 CATH-ID: 1.10.150.40 Barrier-to-autointegration factor. Chain: a, b. Engineered: yes VNG10351 cluster04 -> 1cuk03 5.9741910 48 / 59 conP: 0.273 CATH-ID: 1.10.8.10 Ruva protein. Chain: null. Engineered: yes --end-- VNG10353 one-of-top-five-correct: 0.156036401956177 CThresh: 9.288984 25 best_is: cluster01 VNG10353 cluster00 -> 1ns1A0 4.9823338 73 / 120 conP: 0.145 CATH-ID: 1.10.287.10 Nonstructural protein 1. Chain: a, b. Fragment: RNA-binding domain, re VNG10353 cluster01 -> 1a8vA1 6.1570570 49 / 120 conP: 0.215 CATH-ID: 1.10.720.10 Transcription termination factor rho. Chain: a, b. Fragment: RNA-bindi VNG10353 cluster02 -> 1fjgM1 5.8833445 71 / 120 conP: 0.182 CATH-TRUNC VNG10353 cluster03 -> 1l6sA 4.9906234 322 / 120 conP: 0.038 NO-CATH VNG10353 cluster04 -> 1qrjB2 4.9559766 81 / 120 conP: 0.138 CATH-ID: 1.10.1200.30 His tag. Chain: a. Engineered: yes. Htlv-i capsid protein. Chain: b. E --end-- VNG10354 one-of-top-five-correct: 0.273922754073655 CThresh: 6.978762 37 best_is: cluster10 VNG10354 cluster00 -> 1moq01 6.6701065 218 / 111 conP: 0.145 CATH-ID: 3.40.50.1940 Glucosamine 6-phosphate synthase. Chain: null. Synonym: l-glutamine\:d VNG10354 cluster01 -> 1geo01 6.3039066 166 / 111 conP: 0.174 CATH-ID: 3.30.413.10 Sulfite reductase hemoprotein. Chain: null. Synonym: sirhp. Engineered VNG10354 cluster02 -> 1eqfA1 5.9075623 142 / 111 conP: 0.180 CATH-ID: 1.20.920.10 RNA polymerase ii transcription initiation factor. Chain: a. Fragment: VNG10354 cluster03 -> 1f4qA0 6.6701065 161 / 111 conP: 0.195 CATH-ID: 1.10.238.10 Grancalcin. Chain: a, b. Engineered: yes VNG10354 cluster04 -> 1hbkA0 5.6510299 89 / 111 conP: 0.221 CATH-ID: 1.20.80.10 Acyl-coa binding protein. Chain: a. Synonym: acbp. Engineered: yes VNG10354 cluster10 -> 1cokA0 7.2667366 68 / 111 conP: 0.341 CATH-ID: 1.10.150.50 Second splice variant p73. Chain: a. Fragment: c-terminal domain. Engi --end-- VNG10381 one-of-top-five-correct: 0.482037036530322 CThresh: 7.567744 25 best_is: cluster07 VNG10381 cluster00 -> 1rkd02 6.0771438 256 / 118 conP: 0.102 CATH-ID: 3.90.77.20 Ribokinase. Chain: null. Engineered: yes. Biological_unit: homodimer VNG10381 cluster01 -> 1udb02 7.5121449 212 / 118 conP: 0.182 CATH-ID: 3.40.50.720 Udp-galactose-4-epimerase. Chain: null. Synonym: epimerase. Biological VNG10381 cluster02 -> 1e7aA2 5.2025119 90 / 118 conP: 0.191 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG10381 cluster03 -> 1ag8A2 5.2462133 190 / 118 conP: 0.117 CATH-ID: 3.40.309.10 Aldehyde dehydrogenase. Chain: a, b, c, d. Biological_unit: homotetram VNG10381 cluster04 -> 1frvA1 9.6697486 177 / 118 conP: 0.338 CATH-ID: 3.40.50.700 Hydrogenase. Chain: a, b, c, d. Synonym: cytochrome-c3 hydrogenase. Ec VNG10381 cluster07 -> 1g5cA0 9.8462730 169 / 118 conP: 0.360 CATH-ID: 3.40.1050.10 Beta-carbonic anhydrase. Chain: a, b, c, d, e, f. Engineered: yes --end-- VNG1046h one-of-top-five-correct: 0.378714889686797 CThresh: 7.130690 25 best_is: cluster07 VNG1046h cluster00 -> 2dpmA1 8.7992944 155 / 96 conP: 0.258 CATH-ID: 3.40.50.150 Adenine-specific methyltransferase dpnii 1. Chain: a. Synonym: m.Dpnii VNG1046h cluster01 -> 1a7cA1 5.7370287 193 / 96 conP: 0.098 CATH-ID: 3.30.497.10 Plasminogen activator inhibitor type 1. Chain: a. Synonym: pai-1. Engi VNG1046h cluster02 -> 2ebn00 6.3112035 285 / 96 conP: 0.062 CATH-ID: 3.20.20.80 Endo-beta-n-acetylglucosaminidase f1 (endoglycosidase f1, endo f1) VNG1046h cluster03 -> 1qr6A2 6.1580850 265 / 96 conP: 0.068 CATH-ID: 3.40.50.720 Malic enzyme 2. Chain: a, b. Engineered: yes. Mutation: yes VNG1046h cluster04 -> 1fukA0 7.2897418 157 / 96 conP: 0.182 CATH-ID: 3.40.50.300 Eukaryotic initiation factor 4a. Chain: a. Fragment: carboxy terminal VNG1046h cluster07 -> 2lbp02 8.9906861 145 / 96 conP: 0.284 CATH-ID: 3.40.50.3600 Leucine-binding protein ( LBP ) --end-- VNG1047h one-of-top-five-correct: 0.349572852037935 CThresh: 4.159812 75 best_is: cluster19 VNG1047h cluster00 -> 1gab00 6.6450636 53 / 73 conP: 0.368 CATH-ID: 1.10.8.40 Protein pab. Chain: null. Fragment: albumin-binding domain, residues 2 VNG1047h cluster01 -> 1e5kA0 6.3348410 188 / 73 conP: 0.127 CATH-ID: 3.90.550.30 Molybdopterin-guanine dinucleotide biosynthesis protein a. Chain: a. S VNG1047h cluster02 -> 1e7aA5 6.6461605 112 / 73 conP: 0.249 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG1047h cluster03 -> 1eyrA0 6.2302039 220 / 73 conP: 0.094 CATH-ID: 3.90.550.30 Cmp-n-acetylneuraminic acid synthetase. Chain: a, b. Synonym: acylneur VNG1047h cluster04 -> 1iizA 5.7168828 120 / 73 conP: 0.190 NO-CATH VNG1047h cluster19 -> 1d2nA2 7.8223923 67 / 73 conP: 0.417 CATH-ID: 1.10.8.60 N-ethylmaleimide-sensitive fusion protein. Chain: a. Fragment: d2. Eng --end-- VNG1050h one-of-top-five-correct: 0.14199983520337 CThresh: 8.152145 25 best_is: cluster00 VNG1050h cluster00 -> 1hwxA1 5.4521328 51 / 115 conP: 0.214 CATH-ID: 1.20.15.110 Glutamate dehydrogenase. Chain: a, b, c, d, e, f. Synonym: gdh. Ec: 1. VNG1050h cluster01 -> 1dpsA0 4.4756734 159 / 115 conP: 0.096 CATH-TRUNC VNG1050h cluster02 -> 1qu6A2 5.2368336 76 / 115 conP: 0.180 CATH-ID: 3.30.160.20 Protein kinase pkr. Chain: a. Fragment: dsrna-binding n-terminal domai VNG1050h cluster03 -> 1stu00 5.0438444 68 / 115 conP: 0.179 CATH-ID: 3.30.160.20 Maternal effect protein staufen. Domain: ds RNA binding domain 3. Othe VNG1050h cluster04 -> 1qgkA 4.7623713 876 / 115 conP: 0.001 NO-CATH --end-- VNG10531 one-of-top-five-correct: 0.423888685996521 CThresh: 6.989474 64 best_is: cluster11 VNG10531 cluster00 -> 1e7aA2 8.3292037 90 / 115 conP: 0.390 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG10531 cluster01 -> 1e7aA4 8.2703080 86 / 115 conP: 0.392 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG10531 cluster02 -> 2ng101 7.6930377 89 / 115 conP: 0.349 CATH-ID: 1.20.120.140 Signal sequence recognition protein ffh. Chain: null. Fragment: ng gtp VNG10531 cluster03 -> 1ytfD1 7.7899762 53 / 115 conP: 0.407 CATH-ID: 1.20.15.160 Yeast tata-box binding protein. Chain: a. Fragment: c-terminal 180 ami VNG10531 cluster04 -> 1jf7A 6.4901909 281 / 115 conP: 0.105 NO-CATH VNG10531 cluster11 -> 1a5t03 9.0091502 116 / 115 conP: 0.399 CATH-ID: 1.20.272.10 Delta prime. Chain: null. Synonym: holb. Engineered: yes. Biological_u --end-- VNG10541 one-of-top-five-correct: 0.458710167216683 CThresh: 7.156579 25 best_is: cluster05 VNG10541 cluster00 -> 1aa7A2 6.4736947 78 / 115 conP: 0.280 CATH-ID: 1.10.10.180 Influenza virus matrix protein. Chain: a, b. Biological_unit: dimer VNG10541 cluster01 -> 1ab8A0 7.2981822 177 / 115 conP: 0.212 CATH-ID: 3.50.6.10 Adenylyl cyclase. Chain: a, b. Fragment: c2 domain. Engineered: yes. B VNG10541 cluster02 -> 1e3wA0 5.5453910 251 / 115 conP: 0.094 CATH-ID: 3.40.50.720 Short chain 3-hydroxyacyl-coa dehydrogenase. Chain: a, b, c, d. Synony VNG10541 cluster03 -> 1ytn00 5.7887836 283 / 115 conP: 0.084 CATH-ID: 3.90.190.10 Yersinia protein tyrosine phosphatase. Chain: null. Fragment: catalyti VNG10541 cluster04 -> 1qgkA 7.8415702 876 / 115 conP: 0.004 NO-CATH VNG10541 cluster05 -> 1a6dA1 9.4717343 244 / 115 conP: 0.251 CATH-ID: 1.10.560.10 Thermosome. Chain: a, b. Biological_unit: hexadecamer --end-- VNG10542 one-of-top-five-correct: 0.505729843470996 CThresh: 4.620374 75 best_is: cluster05 VNG10542 cluster00 -> 1qtwA0 8.4379860 285 / 72 conP: 0.083 CATH-ID: 3.20.20.150 Endonuclease iv. Chain: a. Engineered: yes VNG10542 cluster01 -> 1l2qA 8.5634959 457 / 72 conP: 0.017 NO-CATH VNG10542 cluster02 -> 1udb02 7.3104139 212 / 72 conP: 0.118 CATH-ID: 3.40.50.720 Udp-galactose-4-epimerase. Chain: null. Synonym: epimerase. Biological VNG10542 cluster03 -> 1e15A 8.7723429 496 / 72 conP: 0.013 NO-CATH VNG10542 cluster04 -> 2pii00 7.9369549 112 / 72 conP: 0.298 CATH-ID: 3.30.70.120 Pii. Chain: null. Synonym: glnb product. Engineered: yes VNG10542 cluster05 -> 1bhgA3 9.8165778 303 / 72 conP: 0.102 CATH-ID: 3.20.20.80 Beta-glucuronidase. Chain: a, b. Synonym: gus gene product. Engineered --end-- VNG10621 one-of-top-five-correct: 0.377730471381246 CThresh: 2.427814 100 best_is: cluster00 VNG10621 cluster00 -> 1a6q02 7.8483209 69 / 52 conP: 0.410 CATH-ID: 1.10.920.10 Phosphatase 2c. Chain: null. Engineered: yes VNG10621 cluster01 -> 1c82A 6.0060175 719 / 52 conP: 0.000 NO-CATH VNG10621 cluster02 -> 1cfr00 7.3877451 283 / 52 conP: 0.033 CATH-ID: 3.40.91.10 Restriction endonuclease. Chain: null. Fragment: residues 1 - 283. Syn VNG10621 cluster03 -> 1jwfA 6.3179116 139 / 52 conP: 0.148 NO-CATH VNG10621 cluster04 -> 1fqvB0 7.1574571 137 / 52 conP: 0.186 CATH-ID: 3.30.710.10 Skp2. Chain: a, c, e, g, i, k, m, o. Fragment: 101-436. Synonym: cycli --end-- VNG10661 one-of-top-five-correct: 0.2470882860048 CThresh: 3.360939 75 best_is: cluster10 VNG10661 cluster00 -> 1e6uA1 5.3705710 220 / 56 conP: 0.044 CATH-ID: 3.40.50.720 Gdp-fucose synthetase. Chain: a. Synonym: gdp-4-keto 6-deoxy-mannose 3 VNG10661 cluster01 -> 1ihgA 5.8210601 364 / 56 conP: 0.009 NO-CATH VNG10661 cluster02 -> 1a9xA1 5.1453265 116 / 56 conP: 0.136 CATH-ID: 3.40.50.20 Carbamoyl phosphate synthetase. Chain: a, b, c, d, e, f, g, h. Enginee VNG10661 cluster03 -> 2cevA0 5.5958156 298 / 56 conP: 0.018 CATH-ID: 3.40.800.10 Arginase. Chain: a, b, c, d, e, f. Engineered: yes. Biological_unit: h VNG10661 cluster04 -> 1ez0A2 5.2469557 185 / 56 conP: 0.064 CATH-ID: 3.40.309.10 Aldehyde dehydrogenase. Chain: a, b, c, d. Synonym: aldh. Engineered: VNG10661 cluster10 -> 1e6uA1 6.4967938 220 / 56 conP: 0.060 CATH-ID: 3.40.50.720 Gdp-fucose synthetase. Chain: a. Synonym: gdp-4-keto 6-deoxy-mannose 3 --end-- VNG10671 one-of-top-five-correct: 0.436498893276799 CThresh: 4.680482 75 best_is: cluster06 VNG10671 cluster00 -> 1k5hA 6.5375496 398 / 90 conP: 0.041 NO-CATH VNG10671 cluster01 -> 1kdxA0 8.1007409 81 / 90 conP: 0.439 CATH-ID: 1.10.246.20 Cbp. Chain: a. Fragment: kix, residues 586-666. Synonym: creb-binding VNG10671 cluster02 -> 1adeA2 6.1736708 100 / 90 conP: 0.280 CATH-ID: 1.10.300.10 Adenylosuccinate synthetase. Chain: a, b. Domain: c-terminal. Ec: 6.3. VNG10671 cluster03 -> 1a0aA0 5.3126230 63 / 90 conP: 0.288 CATH-ID: 4.10.280.10 Phosphate system positive regulatory protein pho4. Chain: a, b. Fragme VNG10671 cluster04 -> 1i6kA 7.0682014 316 / 90 conP: 0.086 NO-CATH VNG10671 cluster06 -> 1jud02 8.6720963 75 / 90 conP: 0.492 CATH-ID: 1.10.164.10 L-2-haloacid dehalogenase. Chain: null. Engineered: yes --end-- VNG1085h one-of-top-five-correct: 0.217364178110056 CThresh: 5.091782 75 best_is: cluster19 VNG1085h cluster00 -> 1do0A3 6.4053723 109 / 71 conP: 0.198 CATH-ID: 1.10.8.60 Heat shock locus u. Chain: a, b, c, d, e, f. Engineered: yes VNG1085h cluster01 -> 1do0A3 5.6736134 109 / 71 conP: 0.167 CATH-ID: 1.10.8.60 Heat shock locus u. Chain: a, b, c, d, e, f. Engineered: yes VNG1085h cluster02 -> 3inkC0 4.5759281 121 / 71 conP: 0.115 CATH-ID: 1.20.120.200 Interleukin 2 mutant with cys 125 replaced by ala (c125a) VNG1085h cluster03 -> 1d3yA1 4.3287270 71 / 71 conP: 0.165 CATH-ID: 1.10.10.10 DNA topoisomerase vi a subunit. Chain: a, b. Fragment: DNA binding cor VNG1085h cluster04 -> 1aoiC0 4.6249578 115 / 71 conP: 0.122 CATH-ID: 1.10.20.10 Histone h3. Chain: a, e. Engineered: yes. Histone h4. Chain: b, f. Eng VNG1085h cluster19 -> 1bq7A0 6.4833187 186 / 71 conP: 0.106 CATH-ID: 3.40.30.10 Disulfide oxidoreductase. Chain: a, b, c, d, e, f. Synonym: dsba. Engi --end-- VNG1086c one-of-top-five-correct: 0.585226431247807 CThresh: 4.124842 75 best_is: cluster00 VNG1086c cluster00 -> 1vin02 10.038915 113 / 91 conP: 0.552 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O VNG1086c cluster01 -> 1a8vA1 7.3290605 49 / 91 conP: 0.480 CATH-ID: 1.10.720.10 Transcription termination factor rho. Chain: a, b. Fragment: RNA-bindi VNG1086c cluster02 -> 1aep00 7.2311798 153 / 91 conP: 0.287 CATH-ID: 1.20.120.20 Apolipophorin iii VNG1086c cluster03 -> 1pdo00 7.7265968 129 / 91 conP: 0.359 CATH-ID: 3.40.50.510 Mannose permease. Chain: null. Fragment: iia ==man== domain, residues VNG1086c cluster04 -> 1ayx00 7.2311798 492 / 91 conP: 0.029 CATH-ID: 1.50.10.30 Glucoamylase. Chain: null. Engineered: yes --end-- VNG1088c one-of-top-five-correct: 0.347405836000619 CThresh: 4.668810 75 best_is: cluster07 VNG1088c cluster00 -> 1a1w00 6.1316796 83 / 67 conP: 0.231 CATH-ID: 1.10.533.10 Fadd protein. Chain: null. Fragment: death effector domain. Synonym: f VNG1088c cluster01 -> 1kte00 6.2428316 105 / 67 conP: 0.198 CATH-ID: 3.40.30.10 Thioltransferase. Chain: null. Engineered: yes VNG1088c cluster02 -> 1e79A3 6.6696961 131 / 67 conP: 0.175 CATH-ID: 1.20.150.20 Atp synthase alpha chain heart isoform. Chain: a, b, c. Synonym: bovin VNG1088c cluster03 -> 1fc3A0 5.8159671 119 / 67 conP: 0.158 CATH-ID: 1.10.10.60 Spo0a. Chain: a, b, c. Fragment: c-terminal domain. Synonym: sporulati VNG1088c cluster04 -> 1eca00 6.0293993 136 / 67 conP: 0.144 CATH-ID: 1.10.490.10 Hemoglobin (erythrocruorin, aquo met) VNG1088c cluster07 -> 1mun02 8.1637220 112 / 67 conP: 0.285 CATH-ID: 1.10.340.10 Adenine glycosylase. Chain: null. Fragment: catalytic domain. Engineer --end-- VNG1090h one-of-top-five-correct: 0.241108270549447 CThresh: 6.141717 75 best_is: cluster06 VNG1090h cluster00 -> 1e8mA2 6.2645633 353 / 66 conP: 0.012 CATH-ID: 2.130.10.40 Prolyl endopeptidase. Chain: a. Synonym: prolyl endopeptidase, post-pr VNG1090h cluster01 -> 1e1aA0 5.4244747 312 / 66 conP: 0.015 CATH-ID: 2.130.10.50 Diisopropylfluorophosphatase. Chain: a. Synonym: dfpase. Engineered: y VNG1090h cluster02 -> 1jfrA0 5.4244747 260 / 66 conP: 0.026 CATH-ID: 3.40.50.950 Lipase. Chain: a, b. Engineered: yes VNG1090h cluster03 -> 1bebA0 5.6388762 156 / 66 conP: 0.078 CATH-ID: 2.40.128.20 Beta-lactoglobulin. Chain: a, b. Biological_unit: predominantly dimeri VNG1090h cluster04 -> 1ctt01 5.4244747 151 / 66 conP: 0.077 CATH-ID: 3.40.140.10 Cytidine deaminase (cda) complexed with 3,4-dihydrozebularine (dhz) VNG1090h cluster06 -> 1dqaA3 7.4414752 117 / 66 conP: 0.177 CATH-ID: 3.30.70.420 Hmg-coa reductase. Chain: a, b, c, d. Fragment: catalytic portion. Eng --end-- VNG10930 one-of-top-five-correct: 0.269863132273981 CThresh: 7.568516 25 best_is: cluster08 VNG10930 cluster00 -> 1akhB0 5.0955060 78 / 128 conP: 0.214 CATH-ID: 1.10.10.60 Mating-type protein a-1. Chain: a. Engineered: yes. Mating-type protei VNG10930 cluster01 -> 1tc3C0 5.5918559 51 / 128 conP: 0.267 CATH-ID: 1.10.10.60 DNA. Chain: a, b. Engineered: yes. Tc3 transposase. Chain: c. Fragment VNG10930 cluster02 -> 1fokA1 5.7624244 281 / 128 conP: 0.098 CATH-ID: 3.90.241.10 Foki restriction endonuclease. Chain: a. Synonym: r.Foki. Engineered: VNG10930 cluster03 -> 1abrA2 4.8950044 85 / 128 conP: 0.198 CATH-ID: 4.10.470.10 Abrin-a complexed with two sugar chains VNG10930 cluster04 -> 1b37A2 6.2279727 218 / 128 conP: 0.149 CATH-ID: 3.90.660.10 Polyamine oxidase. Chain: a, b, c. Fragment: fad-binding domain. Ec: 1 VNG10930 cluster08 -> 1d2mA3 7.0909607 177 / 128 conP: 0.220 CATH-ID: 3.40.50.300 Excinuclease abc subunit b. Chain: a. Synonym: uvrb. Engineered: yes --end-- VNG10931 one-of-top-five-correct: 0.466841190295697 CThresh: 7.157166 25 best_is: cluster15 VNG10931 cluster00 -> 1fadA0 6.3387906 95 / 118 conP: 0.258 CATH-ID: 1.10.533.10 Fadd protein. Chain: a. Fragment: death domain (residues 89-183). Engi VNG10931 cluster01 -> 1iow01 5.8359661 84 / 118 conP: 0.243 CATH-ID: 3.40.50.20 D-ala\:d-ala ligase. Chain: null. Synonym: dd-ligase, ddlb. Engineered VNG10931 cluster02 -> 1epmE2 4.2977701 149 / 118 conP: 0.123 CATH-ID: 2.40.70.10 Endothia aspartic proteinase (endothiapepsin) complexed with ps2 (thr VNG10931 cluster03 -> 1htjF 5.4259216 178 / 118 conP: 0.141 NO-CATH VNG10931 cluster04 -> 1atiA2 6.8224278 113 / 118 conP: 0.265 CATH-ID: 3.40.50.800 Glycyl-tRNA synthetase. Chain: a, b. Synonym: glycine-tRNA ligase. Oth VNG10931 cluster15 -> 1b1cA0 9.4932243 166 / 118 conP: 0.362 CATH-ID: 3.40.50.360 NADPH-cytochrome p450 reductase. Chain: a. Fragment: fmn-binding domai --end-- VNG10941 one-of-top-five-correct: 0.372378378288726 CThresh: 7.186300 25 best_is: cluster04 VNG10941 cluster00 -> 1d1dA2 7.2060966 80 / 100 conP: 0.283 CATH-ID: 1.10.1200.30 Capsid protein. Chain: a. Engineered: yes. Mutation: yes VNG10941 cluster01 -> 1acf00 6.7818088 125 / 100 conP: 0.203 CATH-ID: 3.30.450.30 Profilin i VNG10941 cluster02 -> 1ci8A 5.5001686 377 / 100 conP: 0.029 NO-CATH VNG10941 cluster03 -> 2blmA 6.2044939 260 / 100 conP: 0.077 NO-CATH VNG10941 cluster04 -> 1reqA2 8.8508538 164 / 100 conP: 0.261 CATH-ID: 3.40.50.280 Methylmalonyl-coa mutase. Chain: a, b, c, d. Engineered: yes. Other_de --end-- VNG1095h one-of-top-five-correct: 0.347902875718342 CThresh: 4.634628 75 best_is: cluster00 VNG1095h cluster00 -> 1mun02 8.2680718 112 / 62 conP: 0.267 CATH-ID: 1.10.340.10 Adenine glycosylase. Chain: null. Fragment: catalytic domain. Engineer VNG1095h cluster01 -> 1ed5A3 7.5394498 89 / 62 conP: 0.277 CATH-ID: 1.10.1010.10 Nitric oxide synthase. Chain: a, b. Fragment: heme domain (residues 39 VNG1095h cluster02 -> 1e7aA4 6.5760276 86 / 62 conP: 0.231 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG1095h cluster03 -> 1cy5A0 7.7579224 92 / 62 conP: 0.283 CATH-ID: 1.10.533.10 Apoptotic protease activating factor 1. Chain: a. Fragment: caspase re VNG1095h cluster04 -> 1ad201 6.8840319 121 / 62 conP: 0.181 CATH-ID: 3.30.190.20 Ribosomal protein l1. Chain: null. Synonym: tl2. Engineered: yes. Muta --end-- VNG1096h one-of-top-five-correct: 0.346792347264244 CThresh: 3.677389 75 best_is: cluster18 VNG1096h cluster00 -> 1copD0 5.3202155 66 / 101 conP: 0.361 CATH-ID: 3.30.240.10 Cro repressor. Chain: d, e. Engineered: yes VNG1096h cluster01 -> 1tys00 6.2943279 264 / 101 conP: 0.159 CATH-ID: 3.30.572.10 Thymidylate synthase mutant with cys 146 replaced by ser (c146s) VNG1096h cluster02 -> 1jciA 6.5555915 294 / 101 conP: 0.142 NO-CATH VNG1096h cluster03 -> 1yrnA0 5.3130975 49 / 101 conP: 0.388 CATH-ID: 1.10.10.60 Mating-type protein a-1. Chain: a. Domain: homeodomain. Synonym: mat a VNG1096h cluster04 -> 1hvxA 6.7440446 483 / 101 conP: 0.045 NO-CATH VNG1096h cluster18 -> 1dosA0 6.9324978 358 / 101 conP: 0.106 CATH-ID: 3.20.20.170 Aldolase class ii. Chain: a, b. Engineered: yes --end-- VNG1110c one-of-top-five-correct: 0.260534025581678 CThresh: 4.336488 75 best_is: cluster00 VNG1110c cluster00 -> 1lehA1 6.8831284 151 / 67 conP: 0.165 CATH-ID: 3.40.192.10 Leucine dehydrogenase. Chain: a, b. Biological_unit: octamer VNG1110c cluster01 -> 1bcrB 5.7944909 146 / 67 conP: 0.132 NO-CATH VNG1110c cluster02 -> 1acf00 5.2868738 125 / 67 conP: 0.141 CATH-ID: 3.30.450.30 Profilin i VNG1110c cluster03 -> 1mb100 6.7652840 98 / 67 conP: 0.250 CATH-ID: 3.10.260.10 Mlu1-box binding protein. Chain: null. Fragment: DNA-binding domain. S VNG1110c cluster04 -> 1apyB0 5.0806935 141 / 67 conP: 0.115 CATH-ID: 3.50.11.10 Aspartylglucosaminidase. Chain: a, b, c, d. Synonym: aga, glycosylaspa --end-- VNG1112h one-of-top-five-correct: 0.172614220643922 CThresh: 10.316276 25 best_is: cluster00 VNG1112h cluster00 -> 1f8dA0 6.6121084 385 / 135 conP: 0.047 CATH-ID: 2.120.10.10 Neuraminidase. Chain: a. Fragment: integral membrane protein, membrane VNG1112h cluster01 -> 1ia8A 3.6553082 272 / 135 conP: 0.037 NO-CATH VNG1112h cluster02 -> 1ehs00 4.5591387 48 / 135 conP: 0.136 CATH-ID: 1.20.10.10 Heat-stable enterotoxin b. Chain: null. Synonym: stb. Engineered: yes VNG1112h cluster03 -> 1k5hA 4.5978799 398 / 135 conP: 0.025 NO-CATH VNG1112h cluster04 -> 1eumA0 6.1079050 161 / 135 conP: 0.120 CATH-ID: 1.20.120.190 Ferritin 1. Chain: a, b, c, d, e, f. Engineered: yes --end-- VNG1115h one-of-top-five-correct: 0.179661195185564 CThresh: 9.585567 25 best_is: cluster08 VNG1115h cluster00 -> 1eif01 4.3458940 68 / 123 conP: 0.123 CATH-ID: 2.30.30.80 Eukaryotic translation initiation factor 5a. Chain: null. Engineered: VNG1115h cluster01 -> 1ijiA 5.1512674 354 / 123 conP: 0.033 NO-CATH VNG1115h cluster02 -> 1svpA2 4.4817321 86 / 123 conP: 0.116 CATH-ID: 2.40.10.10 Sindbis virus capsid protein. Chain: a, b. Fragment: met 106 - ala 264 VNG1115h cluster03 -> 1gz9A 4.8711055 239 / 123 conP: 0.058 NO-CATH VNG1115h cluster04 -> 1a8d02 4.5696671 206 / 123 conP: 0.064 CATH-ID: 2.80.10.50 Tetanus neurotoxin. Chain: null. Fragment: c-fragment. Engineered: yes VNG1115h cluster08 -> 1qd6C0 6.6869250 240 / 123 conP: 0.094 CATH-ID: 2.40.230.10 Outer membrane phospholipase (ompla). Chain: a, b. Fragment: resdiues --end-- VNG11170 one-of-top-five-correct: 0.310229026370071 CThresh: 6.173444 75 best_is: cluster11 VNG11170 cluster00 -> 1uag02 3.9665859 196 / 89 conP: 0.063 CATH-ID: 3.90.77.10 Udp-n-acetylmuramoyl-l-alanine/:d-glutamate ligase. Chain: null. Synon VNG11170 cluster01 -> 1b0pA2 6.0396648 157 / 89 conP: 0.143 CATH-ID: 3.40.50.920 Pyruvate-ferredoxin oxidoreductase. Chain: a, b. Biological_unit: homo VNG11170 cluster02 -> 1ll2A 5.7292526 255 / 89 conP: 0.066 NO-CATH VNG11170 cluster03 -> 1jlaA 4.7499933 546 / 89 conP: 0.005 NO-CATH VNG11170 cluster04 -> 1a8p02 6.5126601 162 / 89 conP: 0.156 CATH-ID: 3.40.50.80 Nadph\:ferredoxin oxidoreductase. Chain: null. Synonym: ferredoxin red VNG11170 cluster11 -> 3ecaA2 7.8836231 114 / 89 conP: 0.286 CATH-ID: 3.40.50.40 Asparaginase type ii (eca) --end-- VNG1119h one-of-top-five-correct: 0.314329707326046 CThresh: 6.455017 75 best_is: cluster04 VNG1119h cluster00 -> 1dik01 6.7358675 153 / 82 conP: 0.146 CATH-ID: 2.30.35.30 Pyruvate phosphate dikinase. Chain: null. Synonym: ppdk. Engineered: y VNG1119h cluster01 -> 1otgA0 7.3272886 125 / 82 conP: 0.204 CATH-ID: 3.30.457.20 5-carboxymethyl-2-hydroxymuconate isomerase. Chain: a, b, c. Engineere VNG1119h cluster02 -> 1ad600 6.7358675 185 / 82 conP: 0.115 CATH-ID: 1.10.472.10 Retinoblastoma tumor suppressor. Chain: null. Fragment: domain a. Engi VNG1119h cluster03 -> 1e7aA3 6.8410478 92 / 82 conP: 0.228 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG1119h cluster04 -> 1jud02 8.2229842 75 / 82 conP: 0.338 CATH-ID: 1.10.164.10 L-2-haloacid dehalogenase. Chain: null. Engineered: yes --end-- VNG1130h one-of-top-five-correct: 0.479503972701321 CThresh: 3.816427 75 best_is: cluster00 VNG1130h cluster00 -> 1dg3A1 9.1419007 300 / 73 conP: 0.108 CATH-ID: 1.20.1000.10 Interferon-induced guanylate-binding protein 1. Chain: a. Fragment: fu VNG1130h cluster01 -> 1chuA3 8.9339223 102 / 73 conP: 0.432 CATH-ID: 1.20.1040.60 L-aspartate oxidase. Chain: a. Engineered: yes. Biological_unit: homod VNG1130h cluster02 -> 1il0A 7.4780739 291 / 73 conP: 0.076 NO-CATH VNG1130h cluster03 -> 1k5hA 8.1887157 398 / 73 conP: 0.035 NO-CATH VNG1130h cluster04 -> 1dkxA2 8.8827867 80 / 73 conP: 0.481 CATH-ID: 1.20.120.110 Substrate binding domain of dnak. Chain: a. Biological_unit: dimer. Su --end-- VNG11310 one-of-top-five-correct: 0.529431581767511 CThresh: 4.427846 75 best_is: cluster10 VNG11310 cluster00 -> 1gca02 7.6605882 161 / 83 conP: 0.252 CATH-ID: 3.40.50.2500 Glucose/galactose-binding protein complex with galactose VNG11310 cluster01 -> 1fjgC1 8.9947861 91 / 83 conP: 0.472 CATH-TRUNC VNG11310 cluster02 -> 1bhmA0 5.9023029 198 / 83 conP: 0.129 CATH-ID: 3.40.91.20 Endonuclease bamhi. Chain: a, b. Synonym: r. Bamhi. Engineered: yes. D VNG11310 cluster03 -> 1onrA0 8.1028263 316 / 83 conP: 0.094 CATH-ID: 3.20.20.70 Transaldolase b. Chain: a, b. Engineered: yes VNG11310 cluster04 -> 1dik04 6.9634671 343 / 83 conP: 0.056 CATH-ID: 3.20.20.60 Pyruvate phosphate dikinase. Chain: null. Synonym: ppdk. Engineered: y VNG11310 cluster10 -> 1ap800 9.7387001 213 / 83 conP: 0.283 CATH-ID: 3.30.760.10 Translation initiation factor eif4e. Chain: null. Engineered: yes --end-- VNG11441 one-of-top-five-correct: 0.177780523783169 CThresh: 8.394017 25 best_is: cluster05 VNG11441 cluster00 -> 1ad201 4.6238973 121 / 116 conP: 0.118 CATH-ID: 3.30.190.20 Ribosomal protein l1. Chain: null. Synonym: tl2. Engineered: yes. Muta VNG11441 cluster01 -> 1cjcA2 4.1017371 241 / 116 conP: 0.053 CATH-ID: 3.50.50.60 Adrenodoxin reductase. Chain: a. Synonym: adr, nadph: adrenodoxin oxid VNG11441 cluster02 -> 1a36A4 5.4463634 96 / 116 conP: 0.165 CATH-ID: 1.10.132.10 Topoisomerase i. Chain: a. Fragment: core domain and c-terminal domain VNG11441 cluster03 -> 1b93A0 6.0028032 148 / 116 conP: 0.145 CATH-ID: 3.40.50.1380 Methylglyoxal synthase. Chain: a, b, c. Engineered: yes VNG11441 cluster04 -> 1moq01 4.2017832 218 / 116 conP: 0.062 CATH-ID: 3.40.50.1940 Glucosamine 6-phosphate synthase. Chain: null. Synonym: l-glutamine\:d VNG11441 cluster05 -> 1itg00 6.2708611 142 / 116 conP: 0.160 CATH-ID: 3.30.420.10 HIV-1 integrase (catalytic domain comprising residues 50 - 212) mutant --end-- VNG1151h one-of-top-five-correct: 0.430029449276571 CThresh: 4.202950 75 best_is: cluster09 VNG1151h cluster00 -> 1qhaA2 7.5192609 261 / 72 conP: 0.088 CATH-ID: 3.40.367.20 Hexokinase. Chain: a, b. Engineered: yes. Other_details: complexed wit VNG1151h cluster01 -> 1di1A0 5.8484850 290 / 72 conP: 0.043 CATH-ID: 1.10.615.10 Aristolochene synthase. Chain: a, b. Synonym: sesquiterpene cyclase, a VNG1151h cluster02 -> 1csc02 7.7281079 112 / 72 conP: 0.305 CATH-ID: 1.10.230.10 Citrate synthase l-malate - carboxymethyl coenzyme A complex VNG1151h cluster03 -> 1jf7A 6.7834405 281 / 72 conP: 0.061 NO-CATH VNG1151h cluster04 -> 1jp6A 8.3546489 152 / 72 conP: 0.263 NO-CATH VNG1151h cluster09 -> 1bmtA1 8.7932697 87 / 72 conP: 0.432 CATH-ID: 1.10.1240.10 Methionine synthase (b12-binding domains) --end-- VNG11530 one-of-top-five-correct: 0.599531687732984 CThresh: 2.579040 100 best_is: cluster15 VNG11530 cluster00 -> 1ptvA0 7.0641289 297 / 84 conP: 0.124 CATH-ID: 3.90.190.10 Protein tyrosine phosphatase 1b. Chain: a. Engineered: yes. Mutation: VNG11530 cluster01 -> 1flp00 6.0952692 142 / 84 conP: 0.281 CATH-ID: 1.10.490.10 Hemoglobin i (monomeric) (ferric) VNG11530 cluster02 -> 1cb5A 9.4601439 453 / 84 conP: 0.072 NO-CATH VNG11530 cluster03 -> 2cb5A 7.8655688 453 / 84 conP: 0.046 NO-CATH VNG11530 cluster04 -> 1il0A 6.2709937 291 / 84 conP: 0.106 NO-CATH VNG11530 cluster15 -> 1il600 9.6594658 166 / 84 conP: 0.472 CATH-ID: 1.20.120.200 Interleukin-6. Chain: null --end-- VNG11620 one-of-top-five-correct: 0.281010116088492 CThresh: 8.550364 25 best_is: cluster13 VNG11620 cluster00 -> 1bl0A1 5.1453265 56 / 119 conP: 0.187 CATH-ID: 1.10.10.60 DNA (5'- d( Gp Gp Gp Gp Ap Tp Tp Tp Ap Gp Cp Ap Ap Ap Ap Cp Gp Tp Gp G VNG11620 cluster01 -> 1yrnA0 6.1570570 49 / 119 conP: 0.242 CATH-ID: 1.10.10.60 Mating-type protein a-1. Chain: a. Domain: homeodomain. Synonym: mat a VNG11620 cluster02 -> 1efuB2 5.1608059 86 / 119 conP: 0.162 CATH-ID: 3.50.13.10 Elongation factor tu. Chain: a, c. Synonym: elongation factor for tran VNG11620 cluster03 -> 1ef4A0 5.6000706 55 / 119 conP: 0.208 CATH-ID: 1.10.10.60 DNA-directed RNA polymerase. Chain: a. Fragment: subunit rpb10. Synony VNG11620 cluster04 -> 1e7aA4 5.8138123 86 / 119 conP: 0.189 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG11620 cluster13 -> 1aa7A2 7.8940941 78 / 119 conP: 0.308 CATH-ID: 1.10.10.180 Influenza virus matrix protein. Chain: a, b. Biological_unit: dimer --end-- VNG1169c one-of-top-five-correct: 0.35004933211946 CThresh: 6.814027 75 best_is: cluster06 VNG1169c cluster00 -> 1ngr00 6.5476994 85 / 118 conP: 0.298 CATH-ID: 1.10.533.10 P75 low affinity neurotrophin receptor. Chain: null. Fragment: death d VNG1169c cluster01 -> 1cei00 6.8358925 85 / 118 conP: 0.316 CATH-ID: 1.10.1200.20 Colicin e7 immunity protein. Chain: null. Synonym: imme7 VNG1169c cluster02 -> 1bvsA3 5.9527819 44 / 118 conP: 0.313 CATH-ID: 1.10.8.10 Ruva. Chain: a, b, c, d, e, f, g, h. Engineered: yes. Biological_unit: VNG1169c cluster03 -> 1mroA3 8.0071736 227 / 118 conP: 0.218 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: VNG1169c cluster04 -> 1bob03 5.1957451 54 / 118 conP: 0.257 CATH-ID: 1.10.900.10 Histone acetyltransferase. Chain: null. Synonym: hat1. Engineered: yes VNG1169c cluster06 -> 1cii03 8.0071736 157 / 118 conP: 0.297 CATH-ID: 1.10.490.30 Colicin ia. Chain: null. Engineered: yes. Biological_unit: monomer --end-- VNG11740 one-of-top-five-correct: 0.8067046649068 CThresh: 4.781370 75 best_is: cluster02 VNG11740 cluster00 -> 1k40A 10.278230 126 / 99 conP: 0.540 NO-CATH VNG11740 cluster01 -> 1qsdA0 10.284757 102 / 99 conP: 0.583 CATH-ID: 1.20.1040.50 Beta-tubulin binding post-chaperonin cofactor. Chain: a, b. Fragment: VNG11740 cluster02 -> 1qkrA0 13.123304 172 / 99 conP: 0.659 CATH-ID: 1.20.120.230 Vinculin. Chain: a, b. Fragment: c-terminal domain. Synonym: tail doma VNG11740 cluster03 -> 1a36A5 10.025425 72 / 99 conP: 0.616 CATH-ID: 1.20.15.30 Topoisomerase i. Chain: a. Fragment: core domain and c-terminal domain VNG11740 cluster04 -> 1k40A 10.278230 126 / 99 conP: 0.540 NO-CATH --end-- VNG11741 one-of-top-five-correct: 0.479574794108659 CThresh: 6.990884 37 best_is: cluster00 VNG11741 cluster00 -> 1jgjA0 8.9656286 217 / 144 conP: 0.360 CATH-ID: 1.20.85.10 Sensory rhodopsin ii. Chain: a. Engineered: yes VNG11741 cluster01 -> 1fsz01 5.6735053 212 / 144 conP: 0.183 CATH-ID: 3.40.50.1440 Ftsz. Chain: null. Synonym: sulb. Engineered: yes VNG11741 cluster02 -> 1kmeA 6.9997371 227 / 144 conP: 0.233 NO-CATH VNG11741 cluster03 -> 1derA1 6.3234603 250 / 144 conP: 0.183 CATH-ID: 1.10.560.10 Groel. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n. Engineered: ye VNG11741 cluster04 -> 1jfgA 6.1052995 354 / 144 conP: 0.113 NO-CATH --end-- VNG11750 one-of-top-five-correct: 0.318992914407263 CThresh: 4.553171 75 best_is: cluster14 VNG11750 cluster00 -> 1bl0A1 7.1725275 56 / 70 conP: 0.366 CATH-ID: 1.10.10.60 DNA (5'- d( Gp Gp Gp Gp Ap Tp Tp Tp Ap Gp Cp Ap Ap Ap Ap Cp Gp Tp Gp G VNG11750 cluster01 -> 1qqeA0 6.6500902 281 / 70 conP: 0.050 CATH-ID: 1.25.40.10 Vesicular transport protein sec17. Chain: a. Engineered: yes. Mutation VNG11750 cluster02 -> 1c9bA2 5.9189987 106 / 70 conP: 0.196 CATH-ID: 1.10.472.10 General transcription factor iib. Chain: a, e, i, m, q. Fragment: c-te VNG11750 cluster03 -> 1qckA0 5.3989368 89 / 70 conP: 0.199 CATH-ID: 1.10.150.40 Barrier-to-autointegration factor. Chain: a, b. Engineered: yes VNG11750 cluster04 -> 1idy00 6.3667687 54 / 70 conP: 0.318 CATH-ID: 1.10.10.60 MousE C-myb DNA-binding domain repeat 3. Chain: null. Engineered: yes. VNG11750 cluster14 -> 1d8jA0 7.6927181 81 / 70 conP: 0.343 CATH-ID: 1.10.10.10 General transcription factor tfiie-beta. Chain: a. Fragment: central c --end-- VNG11752 one-of-top-five-correct: 0.293779738204852 CThresh: 7.264566 25 best_is: cluster03 VNG11752 cluster00 -> 1ei5A2 4.2618144 82 / 99 conP: 0.139 CATH-ID: 2.40.128.50 D-aminopeptidase. Chain: a. Synonym: dap. Engineered: yes VNG11752 cluster01 -> 1a0dA0 6.9890646 437 / 99 conP: 0.028 CATH-ID: 3.20.20.150 Xylose isomerase. Chain: a, b, c, d. Synonym: glucose isomerase. Biolo VNG11752 cluster02 -> 1tys00 7.1411404 264 / 99 conP: 0.093 CATH-ID: 3.30.572.10 Thymidylate synthase mutant with cys 146 replaced by ser (c146s) VNG11752 cluster03 -> 1e79E2 7.9370929 276 / 99 conP: 0.106 CATH-ID: 3.40.50.300 Atp synthase alpha chain heart isoform. Chain: a, b, c. Synonym: bovin VNG11752 cluster04 -> 1svb02 4.8329427 83 / 99 conP: 0.159 CATH-ID: 3.30.67.10 Tick-borne encephalitis virus glycoprotein. Chain: null --end-- VNG11753 one-of-top-five-correct: 0.915238606408475 CThresh: 2.372369 100 best_is: cluster02 VNG11753 cluster00 -> 1k40A 14.297104 126 / 97 conP: 0.862 NO-CATH VNG11753 cluster01 -> 1k40A 14.106315 126 / 97 conP: 0.855 NO-CATH VNG11753 cluster02 -> 1k40A 14.678681 126 / 97 conP: 0.875 NO-CATH VNG11753 cluster03 -> 1fftC0 12.389219 185 / 97 conP: 0.702 CATH-ID: 1.20.120.80 Ubiquinol oxidase. Chain: a, f. Engineered: yes. Ubiquinol oxidase. Ch VNG11753 cluster04 -> 1k04A 14.106315 142 / 97 conP: 0.841 NO-CATH --end-- VNG1178h one-of-top-five-correct: 0.416625182106648 CThresh: 5.247011 75 best_is: cluster14 VNG1178h cluster00 -> 3ygsP0 6.9852711 97 / 75 conP: 0.255 CATH-ID: 1.10.533.10 Apoptotic protease activating factor 1. Chain: c. Fragment: caspase re VNG1178h cluster01 -> 1fjgT0 8.8418408 99 / 75 conP: 0.365 CATH-TRUNC VNG1178h cluster02 -> 1chkA2 7.6696308 95 / 75 conP: 0.298 CATH-ID: 3.30.386.10 Chitosanase. Chain: a, b. Synonym: endochitosanase. Engineered: yes VNG1178h cluster03 -> 1fjgT0 7.0841152 99 / 75 conP: 0.257 CATH-TRUNC VNG1178h cluster04 -> 1e5rA 7.1915566 260 / 75 conP: 0.074 NO-CATH VNG1178h cluster14 -> 1jwfA 9.0481263 139 / 75 conP: 0.296 NO-CATH --end-- VNG1183h one-of-top-five-correct: 0.235164972284038 CThresh: 6.915138 75 best_is: cluster16 VNG1183h cluster00 -> 1onrA0 5.9327293 316 / 82 conP: 0.029 CATH-ID: 3.20.20.70 Transaldolase b. Chain: a, b. Engineered: yes VNG1183h cluster01 -> 1a4mA0 6.5350830 349 / 82 conP: 0.026 CATH-ID: 3.20.20.140 Adenosine deaminase. Chain: a, b, c, d. Synonym: ada. Engineered: yes VNG1183h cluster02 -> 1jkw01 7.1374366 176 / 82 conP: 0.124 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y VNG1183h cluster03 -> 1rlr02 6.9394743 105 / 82 conP: 0.197 CATH-ID: 1.10.395.10 Ribonucleotide reductase protein r1. Chain: null. Synonym: ribonucleos VNG1183h cluster04 -> 1pbv01 5.9756554 82 / 82 conP: 0.185 CATH-ID: 1.10.220.20 Arno. Chain: null. Fragment: sec7 domain, residues 50 - 252. Synonym: VNG1183h cluster16 -> 1fadA0 7.3382212 95 / 82 conP: 0.231 CATH-ID: 1.10.533.10 Fadd protein. Chain: a. Fragment: death domain (residues 89-183). Engi --end-- VNG11841 one-of-top-five-correct: 0.154862533264601 CThresh: 8.097766 25 best_is: cluster18 VNG11841 cluster00 -> 1aj600 5.4973886 194 / 106 conP: 0.090 CATH-ID: 3.30.565.10 Gyrase. Chain: null. Fragment: n-terminal 24 kda. Engineered: yes. Mut VNG11841 cluster01 -> 1d5tA1 3.7655815 105 / 106 conP: 0.098 CATH-ID: 1.10.405.10 Guanine nucleotide dissociation inhibitor. Chain: a. Engineered: yes VNG11841 cluster02 -> 1fezA2 4.7543427 78 / 106 conP: 0.147 CATH-ID: 1.10.164.20 Phosphonoacetaldehyde hydrolase. Chain: a, b, c, d. Engineered: yes VNG11841 cluster03 -> 1din00 4.3961417 233 / 106 conP: 0.053 CATH-ID: 3.40.50.950 Dienelactone hydrolase. Chain: null. Synonym: dlh. Engineered: yes VNG11841 cluster04 -> 1qspA0 3.9041726 165 / 106 conP: 0.071 CATH-ID: 1.20.120.160 Ypd1. Chain: a, b. Engineered: yes. Biological_unit: monomer VNG11841 cluster18 -> 4fxc00 5.9111351 98 / 106 conP: 0.174 CATH-ID: 3.10.20.30 Ferredoxin. Chain: null --end-- VNG1189h one-of-top-five-correct: 0.219223824139005 CThresh: 9.336906 25 best_is: cluster05 VNG1189h cluster00 -> 1i30A 4.9863470 248 / 131 conP: 0.069 NO-CATH VNG1189h cluster01 -> 1qd6C0 6.0537567 240 / 131 conP: 0.095 CATH-ID: 2.40.230.10 Outer membrane phospholipase (ompla). Chain: a, b. Fragment: resdiues VNG1189h cluster02 -> 1f6yA0 5.3075570 258 / 131 conP: 0.071 CATH-ID: 3.20.20.20 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransfera VNG1189h cluster03 -> 1kjzA 5.8922179 400 / 131 conP: 0.041 NO-CATH VNG1189h cluster04 -> 1gkoA 6.8096962 115 / 131 conP: 0.202 NO-CATH VNG1189h cluster05 -> 1avaA2 7.0721368 58 / 131 conP: 0.270 CATH-ID: 2.60.40.1180 Barley alpha-amylase 2(cv menuet). Chain: a, b. Synonym: amy2. Enginee --end-- VNG1194h one-of-top-five-correct: 0.259482988848848 CThresh: 5.265536 75 best_is: cluster16 VNG1194h cluster00 -> 1aorA2 5.3544058 186 / 68 conP: 0.069 CATH-ID: 1.10.569.10 Aldehyde ferredoxin oxidoreductase protein complexed with molybdopteri VNG1194h cluster01 -> 1inp03 5.7793682 166 / 68 conP: 0.093 CATH-ID: 3.40.191.10 Inositol polyphosphate 1-phosphatase (1-ptase) (inositol-1,4-bisphosph VNG1194h cluster02 -> 1bcpB2 4.5044811 110 / 68 conP: 0.113 CATH-ID: 2.40.50.110 Pertussis toxin. Chain: a, b, c, d, e, f, g, h, i, j, k, l. Ec: 2.4.2. VNG1194h cluster03 -> 1rfs00 6.2043306 127 / 68 conP: 0.148 CATH-ID: 2.102.10.10 Rieske protein. Chain: null. Fragment: soluble fragment, c-terminal re VNG1194h cluster04 -> 1g6gA0 5.9918494 127 / 68 conP: 0.141 CATH-ID: 2.60.200.20 Protein kinase rad53. Chain: a, b. Fragment: n-terminal domain (includ VNG1194h cluster16 -> 1e8tA 7.2667366 446 / 68 conP: 0.009 NO-CATH --end-- VNG1196h one-of-top-five-correct: 0.118206161341951 CThresh: 3.811013 75 best_is: cluster01 VNG1196h cluster00 -> 1by5A1 3.7751484 143 / 35 conP: 0.020 CATH-ID: 2.170.130.10 Ferric hydroxamate uptake protein. Chain: a. Synonym: fhua. Ferrichrom VNG1196h cluster01 -> 1fdx00 4.7280758 54 / 35 conP: 0.137 CATH-ID: 3.30.70.20 Ferredoxin VNG1196h cluster02 -> 1bor00 4.2104088 56 / 35 conP: 0.116 CATH-ID: 3.30.40.10 Transcription factor pml. Chain: null. Fragment: ring finger domain, r VNG1196h cluster03 -> 1h70A0 3.9515753 255 / 35 conP: 0.002 CATH-ID: 3.75.10.10 Ng,ng-dimethylarginine dimethylaminohydrolase. Chain: a. Engineered: y VNG1196h cluster04 -> 1b71A2 3.6927418 45 / 35 conP: 0.123 CATH-ID: 2.20.28.10 Rubrerythrin. Chain: a --end-- VNG1200h one-of-top-five-correct: 0.302261254950468 CThresh: 4.971610 75 best_is: cluster11 VNG1200h cluster00 -> 1abv00 6.6696961 105 / 67 conP: 0.207 CATH-ID: 1.10.520.20 Delta subunit of the f1f0-atp synthase. Chain: null. Fragment: n-termi VNG1200h cluster01 -> 1goiA 6.6696961 496 / 67 conP: 0.004 NO-CATH VNG1200h cluster02 -> 1fafA0 6.7652840 79 / 67 conP: 0.260 CATH-ID: 1.20.15.80 Large t antigen. Chain: a. Fragment: n-terminal domain. Engineered: ye VNG1200h cluster03 -> 1cf7B0 6.7343530 82 / 67 conP: 0.252 CATH-ID: 1.10.10.10 Transcription factor e2f-4. Chain: a. Fragment: DNA-binding domain. En VNG1200h cluster04 -> 1cozA0 4.6532694 126 / 67 conP: 0.105 CATH-ID: 3.40.50.620 Glycerol-3-phosphate cytidylyltransferase. Chain: a, b. Engineered: ye VNG1200h cluster11 -> 1xib00 7.7368575 388 / 67 conP: 0.018 CATH-ID: 3.20.20.150 D-xylose isomerase (ph 7.4) --end-- VNG12070 one-of-top-five-correct: 0.449530043769268 CThresh: 2.320929 100 best_is: cluster00 VNG12070 cluster00 -> 1avpA0 8.3613961 204 / 63 conP: 0.189 CATH-ID: 3.40.395.10 Adenoviral proteinase. Chain: a. Fragment: main. Synonym: avp. Enginee VNG12070 cluster01 -> 1c8zA0 7.0568501 265 / 63 conP: 0.075 CATH-ID: 3.20.90.10 Tubby protein. Chain: a. Engineered: yes VNG12070 cluster02 -> 1znbA0 7.7091231 228 / 63 conP: 0.129 CATH-ID: 3.60.15.10 Metallo-beta-lactamase. Chain: a, b. Synonym: class b beta-lactamase. VNG12070 cluster03 -> 1avpA0 8.1439717 204 / 63 conP: 0.180 CATH-ID: 3.40.395.10 Adenoviral proteinase. Chain: a. Fragment: main. Synonym: avp. Enginee VNG12070 cluster04 -> 1avpA0 6.6220014 204 / 63 conP: 0.124 CATH-ID: 3.40.395.10 Adenoviral proteinase. Chain: a. Fragment: main. Synonym: avp. Enginee --end-- VNG12130 one-of-top-five-correct: 0.222790084762175 CThresh: 6.392744 75 best_is: cluster05 VNG12130 cluster00 -> 1a5t03 6.5507375 116 / 70 conP: 0.149 CATH-ID: 1.20.272.10 Delta prime. Chain: null. Synonym: holb. Engineered: yes. Biological_u VNG12130 cluster01 -> 1eyvA0 5.6074624 131 / 70 conP: 0.103 CATH-ID: 1.10.940.10 N-utilizing substance protein b homolog. Chain: a, b. Synonym: nusb pr VNG12130 cluster02 -> 1qqeA0 4.8656881 281 / 70 conP: 0.020 CATH-ID: 1.25.40.10 Vesicular transport protein sec17. Chain: a. Engineered: yes. Mutation VNG12130 cluster03 -> 1hx0A 4.6550570 495 / 70 conP: 0.002 NO-CATH VNG12130 cluster04 -> 1bl0A2 5.0980557 60 / 70 conP: 0.168 CATH-ID: 1.10.10.60 DNA (5'- d( Gp Gp Gp Gp Ap Tp Tp Tp Ap Gp Cp Ap Ap Ap Ap Cp Gp Tp Gp G VNG12130 cluster05 -> 1aisB1 7.1826310 99 / 70 conP: 0.199 CATH-ID: 1.10.472.10 Tata-binding protein. Chain: a. Fragment: residues 1 - 181. Synonym: t --end-- VNG1220h one-of-top-five-correct: 0.347038540070592 CThresh: 6.971843 29 best_is: cluster06 VNG1220h cluster00 -> 1lbkA 6.4258660 208 / 106 conP: 0.133 NO-CATH VNG1220h cluster01 -> 1idy00 6.0827801 54 / 106 conP: 0.277 CATH-ID: 1.10.10.60 MousE C-myb DNA-binding domain repeat 3. Chain: null. Engineered: yes. VNG1220h cluster02 -> 1mbe00 5.6476405 52 / 106 conP: 0.255 CATH-ID: 1.10.10.60 Myb proto-oncogene protein. Domain: DNA-binding domain repeat 1. Other VNG1220h cluster03 -> 1fjgB2 5.8920555 62 / 106 conP: 0.256 CATH-TRUNC VNG1220h cluster04 -> 1elkA0 5.6703357 153 / 106 conP: 0.150 CATH-ID: 1.25.40.90 Target of myb1. Chain: a, b. Fragment: vhs domain. Engineered: yes. Mu VNG1220h cluster06 -> 1nhp02 8.3156898 150 / 106 conP: 0.279 CATH-ID: 3.50.50.60 Nadh peroxidase (npx) mutant with cys 42 replaced by ala (c42a) --end-- VNG1226h one-of-top-five-correct: 0.316728213125972 CThresh: 5.617383 75 best_is: cluster22 VNG1226h cluster00 -> 1quvA2 6.9591051 119 / 65 conP: 0.167 CATH-ID: 3.30.70.620 RNA-directed RNA polymerase. Chain: a. Fragment: residues 2420-2989. S VNG1226h cluster01 -> 1uox00 6.1067133 295 / 65 conP: 0.023 CATH-ID: 3.10.270.10 Urate oxidase. Chain: null. Synonym: uricase. Biological_unit: tetrame VNG1226h cluster02 -> 1f4iA0 6.1373296 45 / 65 conP: 0.260 CATH-ID: 1.10.8.10 Uv excision repair protein protein rad23 homolog a. Chain: a. Fragment VNG1226h cluster03 -> 1cfb02 5.1411157 106 / 65 conP: 0.120 CATH-ID: 2.60.40.30 Drosophila neuroglian (chymotryptic fragment containing the two amino VNG1226h cluster04 -> 1gsh02 6.3221028 105 / 65 conP: 0.163 CATH-ID: 3.30.470.20 Glutathione biosynthetic ligase. Chain: null. Synonym: glutathione syn VNG1226h cluster22 -> 1lxl00 8.2606079 221 / 65 conP: 0.089 CATH-ID: 1.10.437.10 Bcl-xl. Chain: null. Synonym: apoptosis regulator bcl-x. Engineered: y --end-- VNG1229h one-of-top-five-correct: 0.511255283430376 CThresh: 3.885650 75 best_is: cluster08 VNG1229h cluster00 -> 1i27A0 8.8040188 73 / 67 conP: 0.463 CATH-ID: 1.10.10.10 Transcription factor iif. Chain: a. Fragment: rap74 subunit, c-termina VNG1229h cluster01 -> 1ddf00 6.5540825 127 / 67 conP: 0.204 CATH-ID: 1.10.533.10 Fas. Chain: null. Engineered: yes VNG1229h cluster02 -> 1chkA2 8.3771543 95 / 67 conP: 0.377 CATH-ID: 3.30.386.10 Chitosanase. Chain: a, b. Synonym: endochitosanase. Engineered: yes VNG1229h cluster03 -> 1opc00 7.9502897 99 / 67 conP: 0.339 CATH-ID: 1.10.10.10 Ompr. Chain: null. Fragment: c-terminal DNA-binding domain. Synonym: o VNG1229h cluster04 -> 1qsaA2 9.2997014 70 / 67 conP: 0.506 CATH-ID: 1.10.1240.20 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein VNG1229h cluster08 -> 1qsaA2 9.6577478 70 / 67 conP: 0.532 CATH-ID: 1.10.1240.20 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein --end-- VNG12340 one-of-top-five-correct: 0.495572049092782 CThresh: 2.852511 100 best_is: cluster14 VNG12340 cluster00 -> 1mdl01 7.2981516 126 / 67 conP: 0.288 CATH-ID: 3.30.390.10 Mandelate racemase. Chain: null. Engineered: yes. Mutation: k166r VNG12340 cluster01 -> 1a6s00 7.7368575 87 / 67 conP: 0.408 CATH-ID: 1.10.150.90 Gag polyprotein. Chain: null. Fragment: m-domain. Engineered: yes. Mut VNG12340 cluster02 -> 1a6s00 7.7368575 87 / 67 conP: 0.408 CATH-ID: 1.10.150.90 Gag polyprotein. Chain: null. Fragment: m-domain. Engineered: yes. Mut VNG12340 cluster03 -> 1dptA0 7.5234252 117 / 67 conP: 0.322 CATH-ID: 3.30.429.10 D-dopachrome tautomerase. Chain: a, b, c. Engineered: yes. Biological_ VNG12340 cluster04 -> 1rypD0 6.4562639 241 / 67 conP: 0.087 CATH-ID: 3.60.20.10 20s proteasome. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, VNG12340 cluster14 -> 1chmA2 9.0174511 246 / 67 conP: 0.159 CATH-ID: 3.90.230.10 Creatine amidinohydrolase --end-- VNG12351 one-of-top-five-correct: 0.513411513515413 CThresh: 2.433992 100 best_is: cluster15 VNG12351 cluster00 -> 1in4A 8.0792506 298 / 60 conP: 0.058 NO-CATH VNG12351 cluster01 -> 1a5t03 5.8729035 116 / 60 conP: 0.213 CATH-ID: 1.20.272.10 Delta prime. Chain: null. Synonym: holb. Engineered: yes. Biological_u VNG12351 cluster02 -> 1ej5A0 7.6379812 107 / 60 conP: 0.334 CATH-ID: 1.10.850.10 Wiskott-aldrich syndrome protein. Chain: a. Synonym: wasp. Engineered: VNG12351 cluster03 -> 1frvB0 5.2109993 530 / 60 conP: 0.002 CATH-ID: 1.10.645.10 Hydrogenase. Chain: a, b, c, d. Synonym: cytochrome-c3 hydrogenase. Ec VNG12351 cluster04 -> 1fnnA1 6.5348076 101 / 60 conP: 0.281 CATH-ID: 1.10.8.60 Cell division control protein 6. Chain: a, b. Synonym: cdc6p. Engineer VNG12351 cluster15 -> 1in4A 9.1824242 298 / 60 conP: 0.078 NO-CATH --end-- VNG1238c one-of-top-five-correct: 0.38490653229313 CThresh: 5.173556 75 best_is: cluster19 VNG1238c cluster00 -> 1bu2A1 6.6736057 112 / 72 conP: 0.206 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG1238c cluster01 -> 1bu2A1 6.8783860 112 / 72 conP: 0.216 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG1238c cluster02 -> 1bu2A2 6.9364865 102 / 72 conP: 0.236 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG1238c cluster03 -> 1jse00 7.1970769 129 / 72 conP: 0.204 CATH-ID: 1.10.530.10 Lysozyme. Chain: null. Ec: 3.2.1.17 VNG1238c cluster04 -> 1bgvA1 6.0573320 167 / 72 conP: 0.113 CATH-ID: 3.40.50.720 Glutamate dehydrogenase. Chain: a. Biological_unit: homohexamer VNG1238c cluster19 -> 1ahjB1 8.7214087 110 / 72 conP: 0.323 CATH-ID: 1.10.472.20 Nitrile hydratase. Chain: a, b, c, d, e, f, g, h. Biological_unit: het --end-- VNG1239h one-of-top-five-correct: 0.147369232543492 CThresh: 3.720324 75 best_is: cluster02 VNG1239h cluster00 -> 1dm9A0 4.3036319 104 / 38 conP: 0.059 CATH-ID: 3.10.290.10 Hypothetical 15.5 kd protein in mrca-pcka intergenic region. Chain: a, VNG1239h cluster01 -> 1dqwA0 5.0616836 267 / 38 conP: 0.004 CATH-ID: 3.20.20.90 Orotidine 5'-phosphate decarboxylase. Chain: a, b, c, d. Engineered: y VNG1239h cluster02 -> 1gmwA 5.3143675 134 / 38 conP: 0.046 NO-CATH VNG1239h cluster03 -> 1koe00 4.5563158 172 / 38 conP: 0.019 CATH-ID: 3.10.100.10 Endostatin. Chain: null. Fragment: c-terminal 184 residues of alpha1 c VNG1239h cluster04 -> 1bgvA1 4.3036319 167 / 38 conP: 0.019 CATH-ID: 3.40.50.720 Glutamate dehydrogenase. Chain: a. Biological_unit: homohexamer --end-- VNG12401 one-of-top-five-correct: 0.320906654156218 CThresh: 2.346244 100 best_is: cluster05 VNG12401 cluster00 -> 1gsh02 5.2711684 105 / 53 conP: 0.176 CATH-ID: 3.30.470.20 Glutathione biosynthetic ligase. Chain: null. Synonym: glutathione syn VNG12401 cluster01 -> 1geo01 6.1870985 166 / 53 conP: 0.111 CATH-ID: 3.30.413.10 Sulfite reductase hemoprotein. Chain: null. Synonym: sirhp. Engineered VNG12401 cluster02 -> 1fc2C0 4.7866674 43 / 53 conP: 0.297 CATH-ID: 4.10.310.10 Immunoglobulin fc and fragment b of protein a complex VNG12401 cluster03 -> 1aa7A1 6.1870985 79 / 53 conP: 0.282 CATH-ID: 1.20.91.10 Influenza virus matrix protein. Chain: a, b. Biological_unit: dimer VNG12401 cluster04 -> 1aua02 6.4160811 83 / 53 conP: 0.285 CATH-ID: 1.10.8.20 Phosphatidylinositol transfer protein sec14p. Chain: null. Engineered: VNG12401 cluster05 -> 1gsh02 7.1030287 105 / 53 conP: 0.267 CATH-ID: 3.30.470.20 Glutathione biosynthetic ligase. Chain: null. Synonym: glutathione syn --end-- VNG12403 one-of-top-five-correct: 0.283404344903664 CThresh: 6.923411 75 best_is: cluster13 VNG12403 cluster00 -> 1d7uA1 7.1853900 141 / 90 conP: 0.185 CATH-ID: 3.30.70.160 2,2-dialkylglycine decarboxylase (pyruvate). Chain: a. Synonym: dgd. E VNG12403 cluster01 -> 1qmvA 5.2374469 195 / 90 conP: 0.079 NO-CATH VNG12403 cluster02 -> 1pdnC2 4.9598341 55 / 90 conP: 0.189 CATH-ID: 1.10.10.10 Prd paired domain. Chain: c. DNA. Chain: a, b VNG12403 cluster03 -> 1b4uA0 5.7395523 132 / 90 conP: 0.139 CATH-ID: 1.10.700.10 Protocatechuate 4,5-dioxygenase. Chain: a, b, c, d. Fragment: chain a, VNG12403 cluster04 -> 1a8l02 4.8356590 106 / 90 conP: 0.132 CATH-ID: 3.40.30.10 Protein disulfide oxidoreductase. Chain: null. Engineered: yes VNG12403 cluster13 -> 1g6wA2 7.8489522 137 / 90 conP: 0.221 CATH-ID: 1.20.1050.10 Ure2 protein. Chain: a, b, c, d. Fragment: globular domain (residues 9 --end-- VNG12521 one-of-top-five-correct: 0.139603408153499 CThresh: 8.555860 25 best_is: cluster13 VNG12521 cluster00 -> 1ihgA 4.2898072 364 / 111 conP: 0.023 NO-CATH VNG12521 cluster01 -> 1dozA1 5.6302598 166 / 111 conP: 0.109 CATH-ID: 3.40.50.1400 Ferrochelatase. Chain: a. Engineered: yes VNG12521 cluster02 -> 1hxn00 4.6008188 210 / 111 conP: 0.064 CATH-ID: 2.110.10.10 Hemopexin. Chain: null. Domain: c-terminal domain. Synonym: hpx. Heter VNG12521 cluster03 -> 1hocA1 4.3781968 181 / 111 conP: 0.072 CATH-ID: 3.30.500.10 Murine class i major histocompatibility complex consisting of h-2d==b= VNG12521 cluster04 -> 1qh5A0 5.2053069 260 / 111 conP: 0.056 CATH-ID: 3.60.15.10 Hydroxyacylglutathione hydrolase. Chain: a, b. Synonym: glyoxalase ii. VNG12521 cluster13 -> 9gafA2 5.6720738 143 / 111 conP: 0.125 CATH-ID: 3.50.11.10 Glycosylasparaginase. Chain: a, c. Synonym: glycoasparaginase,aspartyl --end-- VNG12550 one-of-top-five-correct: 0.338668311323577 CThresh: 5.010864 75 best_is: cluster00 VNG12550 cluster00 -> 2hmqA0 7.7572969 113 / 87 conP: 0.328 CATH-ID: 1.20.120.50 Hemerythrin (met) VNG12550 cluster01 -> 1k94A 5.9824135 165 / 87 conP: 0.162 NO-CATH VNG12550 cluster02 -> 1cei00 6.6600673 85 / 87 conP: 0.308 CATH-ID: 1.10.1200.20 Colicin e7 immunity protein. Chain: null. Synonym: imme7 VNG12550 cluster03 -> 1cuk03 6.2100330 48 / 87 conP: 0.345 CATH-ID: 1.10.8.10 Ruva protein. Chain: null. Engineered: yes VNG12550 cluster04 -> 1hqvA0 5.4296628 178 / 87 conP: 0.129 CATH-ID: 1.10.238.10 Programmed cell death protein 6. Chain: a. Synonym: probable calcium-b --end-- VNG1257h one-of-top-five-correct: 0.450787706956926 CThresh: 5.000427 75 best_is: cluster09 VNG1257h cluster00 -> 2occC2 7.3613707 191 / 93 conP: 0.211 CATH-ID: 1.20.120.80 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, VNG1257h cluster01 -> 1qojA0 5.9527819 44 / 93 conP: 0.351 CATH-ID: 4.10.860.10 Uvrb. Chain: a, b. Fragment: c-terminal domain VNG1257h cluster02 -> 1jqcA0 6.5883688 340 / 93 conP: 0.065 CATH-ID: 1.10.620.20 Protein r2 of ribonucleotide reductase. Chain: a, b. Synonym: ribonucl VNG1257h cluster03 -> 1ibrB0 6.5883688 458 / 93 conP: 0.028 CATH-ID: 1.25.30.20 Ran. Chain: a, c. Engineered: yes. Importin beta subunit. Chain: b, d. VNG1257h cluster04 -> 1aqt02 6.0271037 47 / 93 conP: 0.350 CATH-ID: 1.20.15.20 Atp synthase. Chain: null. Fragment: epsilon chain. Engineered: yes. M VNG1257h cluster09 -> 1cpq00 8.9073744 129 / 93 conP: 0.400 CATH-ID: 1.20.120.10 Cytochrome c'. Chain: null --end-- VNG1260c one-of-top-five-correct: 0.856789416823942 CThresh: 2.810764 100 best_is: cluster08 VNG1260c cluster00 -> 1fpoA 10.385473 171 / 93 conP: 0.550 NO-CATH VNG1260c cluster01 -> 1qqtA3 10.646629 138 / 93 conP: 0.628 CATH-ID: 1.10.730.10 Methionyl-tRNA synthetase. Chain: a. Fragment: truncated fragment, res VNG1260c cluster02 -> 1dlc01 11.226380 229 / 93 conP: 0.502 CATH-ID: 1.20.190.10 Delta-endotoxin cryiiia (bt13) VNG1260c cluster03 -> 1qdbA 11.565289 473 / 93 conP: 0.150 NO-CATH VNG1260c cluster04 -> 1k04A 10.066877 142 / 93 conP: 0.581 NO-CATH VNG1260c cluster08 -> 1ivhA3 13.352135 141 / 93 conP: 0.783 CATH-ID: 1.20.140.10 Isovaleryl-coa dehydrogenase. Chain: a, b, c, d. Engineered: yes. Biol --end-- VNG1261h one-of-top-five-correct: 0.340801865029467 CThresh: 5.352489 75 best_is: cluster03 VNG1261h cluster00 -> 1cuk02 5.3285763 76 / 59 conP: 0.157 CATH-ID: 1.10.150.30 Ruva protein. Chain: null. Engineered: yes VNG1261h cluster01 -> 2phy00 5.6930852 125 / 59 conP: 0.104 CATH-ID: 3.30.450.20 Photoactive yellow protein. Chain: null. Synonym: pyp VNG1261h cluster02 -> 2tct02 5.4713351 133 / 59 conP: 0.090 CATH-ID: 1.10.357.10 Tetracycline repressor. Chain: null. Synonym: tet repressor, class d. VNG1261h cluster03 -> 1aisB1 8.5758367 99 / 59 conP: 0.266 CATH-ID: 1.10.472.10 Tata-binding protein. Chain: a. Fragment: residues 1 - 181. Synonym: t VNG1261h cluster04 -> 1eszA 4.8060847 260 / 59 conP: 0.018 NO-CATH --end-- VNG1263c one-of-top-five-correct: 0.630024103744724 CThresh: 3.839350 75 best_is: cluster18 VNG1263c cluster00 -> 1hgu00 6.0269793 186 / 79 conP: 0.149 CATH-ID: 1.20.120.200 Human growth hormone. Chain: null. Synonym: human somatotropin VNG1263c cluster01 -> 1a5t03 7.6997911 116 / 79 conP: 0.345 CATH-ID: 1.20.272.10 Delta prime. Chain: null. Synonym: holb. Engineered: yes. Biological_u VNG1263c cluster02 -> 1ash00 6.5421148 147 / 79 conP: 0.223 CATH-ID: 1.10.490.10 Hemoglobin (domain one) VNG1263c cluster03 -> 1bgxT3 6.6361772 147 / 79 conP: 0.227 CATH-ID: 3.30.420.10 Taq DNA polymerase. Chain: t. Engineered: yes. Biological_unit: monome VNG1263c cluster04 -> 1a5t03 6.7297135 116 / 79 conP: 0.285 CATH-ID: 1.20.272.10 Delta prime. Chain: null. Synonym: holb. Engineered: yes. Biological_u VNG1263c cluster18 -> 5eat02 10.697496 371 / 79 conP: 0.115 CATH-ID: 1.10.615.10 5-epi-aristolochene synthase. Chain: null. Synonym: 5-epi-aristolochen --end-- VNG1264c one-of-top-five-correct: 0.452066865940919 CThresh: 6.995389 27 best_is: cluster00 VNG1264c cluster00 -> 1dtwA0 9.0748279 382 / 126 conP: 0.150 CATH-ID: 3.40.50.970 Branched-chain alpha-keto acid dehydrogenase alpha subunit. Chain: a. VNG1264c cluster01 -> 1ejbA0 7.2103350 168 / 126 conP: 0.253 CATH-ID: 3.40.50.960 Lumazine synthase. Chain: a, b, c, d, e. Engineered: yes VNG1264c cluster02 -> 1qgoA2 5.6981484 134 / 126 conP: 0.209 CATH-ID: 3.40.50.1400 Anaerobic cobalamine biosynthetic cobalt chelatase. Chain: a. Synonym: VNG1264c cluster03 -> 1bd0A1 7.1480143 211 / 126 conP: 0.208 CATH-ID: 3.20.20.10 Alanine racemase. Chain: a, b. Biological_unit: dimer VNG1264c cluster04 -> 1efuA1 6.8102111 172 / 126 conP: 0.228 CATH-ID: 3.40.50.300 Elongation factor tu. Chain: a, c. Synonym: elongation factor for tran --end-- VNG1281h one-of-top-five-correct: 0.395477599756207 CThresh: 6.412872 75 best_is: cluster05 VNG1281h cluster00 -> 1alvA0 6.9168104 173 / 125 conP: 0.254 CATH-ID: 1.10.238.10 Calpain. Chain: a, b. Fragment: calcium binding domain vi. Synonym: s- VNG1281h cluster01 -> 1utg00 5.8129180 70 / 125 conP: 0.306 CATH-ID: 1.10.210.10 Uteroglobin (oxidized) VNG1281h cluster02 -> 1rthA2 6.4794084 94 / 125 conP: 0.319 CATH-ID: 3.30.70.270 HIV-1 reverse transcriptase. Chain: a, b. Synonym: HIV-1 rt. Engineere VNG1281h cluster03 -> 1bxdA0 6.5272301 161 / 125 conP: 0.246 CATH-ID: 3.30.565.10 Osmolarity sensor protein (envz). Chain: a. Fragment: residues 290-450 VNG1281h cluster04 -> 1mml02 6.3346674 146 / 125 conP: 0.251 CATH-ID: 3.30.70.270 Mmlv reverse transcriptase. Chain: null. Engineered: yes VNG1281h cluster05 -> 1cokA0 8.1982478 68 / 125 conP: 0.470 CATH-ID: 1.10.150.50 Second splice variant p73. Chain: a. Fragment: c-terminal domain. Engi --end-- VNG1283h one-of-top-five-correct: 0.601250384292533 CThresh: 2.296818 100 best_is: cluster11 VNG1283h cluster00 -> 1bu2A2 8.6913868 102 / 65 conP: 0.457 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG1283h cluster01 -> 1mroB2 8.2606079 295 / 65 conP: 0.085 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: VNG1283h cluster02 -> 1fjgT0 9.7683340 99 / 65 conP: 0.542 CATH-TRUNC VNG1283h cluster03 -> 1aisB1 8.6913868 99 / 65 conP: 0.465 CATH-ID: 1.10.472.10 Tata-binding protein. Chain: a. Fragment: residues 1 - 181. Synonym: t VNG1283h cluster04 -> 1dn1A3 6.1067133 120 / 65 conP: 0.247 CATH-ID: 1.25.40.60 Syntaxin binding protein 1. Chain: a. Synonym: nsec1. Engineered: yes. VNG1283h cluster11 -> 1jkw02 9.9837235 101 / 65 conP: 0.552 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y --end-- VNG12851 one-of-top-five-correct: 0.327358383034741 CThresh: 6.582158 75 best_is: cluster15 VNG12851 cluster00 -> 1a8p02 6.4747774 162 / 97 conP: 0.163 CATH-ID: 3.40.50.80 Nadph\:ferredoxin oxidoreductase. Chain: null. Synonym: ferredoxin red VNG12851 cluster01 -> 1ei5A2 7.6894965 82 / 97 conP: 0.331 CATH-ID: 2.40.128.50 D-aminopeptidase. Chain: a. Synonym: dap. Engineered: yes VNG12851 cluster02 -> 1k9sA 5.8297648 237 / 97 conP: 0.086 NO-CATH VNG12851 cluster03 -> 1fehA5 5.7954442 211 / 97 conP: 0.101 CATH-ID: 3.40.950.10 Periplasmic hydrogenase 1. Chain: a. Ec: 1.18.99.1 VNG12851 cluster04 -> 1ei5A2 6.3565090 82 / 97 conP: 0.252 CATH-ID: 2.40.128.50 D-aminopeptidase. Chain: a. Synonym: dap. Engineered: yes VNG12851 cluster15 -> 1dleA 8.1027868 218 / 97 conP: 0.172 NO-CATH --end-- VNG1287c one-of-top-five-correct: 0.459685088273119 CThresh: 8.421141 25 best_is: cluster04 VNG1287c cluster00 -> 1bqcA0 6.0244876 302 / 139 conP: 0.096 CATH-ID: 3.20.20.80 Beta-mannanase. Chain: a. Ec: 3.2.1.78 VNG1287c cluster01 -> 1b6400 5.5853224 91 / 139 conP: 0.213 CATH-ID: 3.30.70.60 Elongation factor 1-beta. Chain: null. Fragment: guanine exchange fact VNG1287c cluster02 -> 1d5kA0 5.3023776 89 / 139 conP: 0.201 CATH-ID: 3.30.70.60 Translation elongation factor 1beta. Chain: a. Engineered: yes VNG1287c cluster03 -> 1dhmA0 5.4699853 83 / 139 conP: 0.214 CATH-ID: 3.30.70.330 E2 protein. Chain: a, b. Fragment: DNA-binding domain. Engineered: yes VNG1287c cluster04 -> 1gh8A0 9.5094840 89 / 139 conP: 0.458 CATH-ID: 3.30.70.60 Translation elongation factor 1beta. Chain: a. Engineered: yes --end-- VNG1289h one-of-top-five-correct: 0.245697872344396 CThresh: 5.565853 75 best_is: cluster10 VNG1289h cluster00 -> 1jc9A 5.0763193 220 / 70 conP: 0.046 NO-CATH VNG1289h cluster01 -> 1avdA0 5.2997678 123 / 70 conP: 0.121 CATH-ID: 2.40.128.30 Avidin complex with biotin VNG1289h cluster02 -> 1dlc03 6.3401063 197 / 70 conP: 0.081 CATH-ID: 2.100.10.10 Delta-endotoxin cryiiia (bt13) VNG1289h cluster03 -> 2nmbA0 5.7082128 147 / 70 conP: 0.108 CATH-ID: 2.30.29.30 Numb protein. Chain: a. Fragment: ptb domain. Engineered: yes. Gppy pe VNG1289h cluster04 -> 1avpA0 6.4415647 204 / 70 conP: 0.078 CATH-ID: 3.40.395.10 Adenoviral proteinase. Chain: a. Fragment: main. Synonym: avp. Enginee VNG1289h cluster10 -> 1cf3A1 7.1574606 204 / 70 conP: 0.094 CATH-ID: 3.50.50.60 Glucose oxidase. Chain: a. Biological_unit: homodimer --end-- VNG1292h one-of-top-five-correct: 0.175496528157168 CThresh: 1.505680 100 best_is: cluster03 VNG1292h cluster00 -> 1a6dA1 4.9255682 244 / 36 conP: 0.007 CATH-ID: 1.10.560.10 Thermosome. Chain: a, b. Biological_unit: hexadecamer VNG1292h cluster01 -> 1qrjB2 4.9255682 81 / 36 conP: 0.148 CATH-ID: 1.10.1200.30 His tag. Chain: a. Engineered: yes. Htlv-i capsid protein. Chain: b. E VNG1292h cluster02 -> 1cokA0 4.4121398 68 / 36 conP: 0.161 CATH-ID: 1.10.150.50 Second splice variant p73. Chain: a. Fragment: c-terminal domain. Engi VNG1292h cluster03 -> 14psA0 4.9255682 226 / 36 conP: 0.010 CATH-ID: 1.20.190.20 14-3-3 protein zeta/delta. Chain: a, b. Engineered: yes. Biological_un VNG1292h cluster04 -> 1a6dA1 4.9255682 244 / 36 conP: 0.007 CATH-ID: 1.10.560.10 Thermosome. Chain: a, b. Biological_unit: hexadecamer --end-- VNG12941 one-of-top-five-correct: 0.198833553190226 CThresh: 7.536322 25 best_is: cluster07 VNG12941 cluster00 -> 1a1w00 5.7022553 83 / 119 conP: 0.224 CATH-ID: 1.10.533.10 Fadd protein. Chain: null. Fragment: death effector domain. Synonym: f VNG12941 cluster01 -> 1agsA 5.7645404 221 / 119 conP: 0.116 NO-CATH VNG12941 cluster02 -> 1qfmA1 5.9437854 349 / 119 conP: 0.061 CATH-ID: 3.40.50.950 Prolyl oligopeptidase. Chain: a. Synonym: prolyl endopeptidase, post-p VNG12941 cluster03 -> 1ngr00 5.9567686 85 / 119 conP: 0.235 CATH-ID: 1.10.533.10 P75 low affinity neurotrophin receptor. Chain: null. Fragment: death d VNG12941 cluster04 -> 1sly03 6.0870212 173 / 119 conP: 0.160 CATH-ID: 1.10.530.10 70-kda soluble lytic transglycosylase. Chain: null. Synonym: slt70, ex VNG12941 cluster07 -> 1rdr03 6.1909681 81 / 119 conP: 0.252 CATH-ID: 1.20.960.20 Poliovirus 3d polymerase. Chain: null. Engineered: yes --end-- VNG1295h one-of-top-five-correct: 0.446647561863544 CThresh: 3.419089 75 best_is: cluster02 VNG1295h cluster00 -> 1gcuA2 8.1948677 148 / 62 conP: 0.238 CATH-ID: 3.30.360.10 Biliverdin reductase a. Chain: a. Engineered: yes VNG1295h cluster01 -> 1av401 6.4470866 87 / 62 conP: 0.273 CATH-ID: 3.10.30.70 Amine oxidase. Chain: null. Synonym: agao. Biological_unit: dimer VNG1295h cluster02 -> 1av401 8.8502856 87 / 62 conP: 0.429 CATH-ID: 3.10.30.70 Amine oxidase. Chain: null. Synonym: agao. Biological_unit: dimer VNG1295h cluster03 -> 1cid01 7.1880644 106 / 62 conP: 0.273 CATH-ID: 2.60.40.10 Cd4 (domains 3 and 4) VNG1295h cluster04 -> 1gcuA2 7.1025045 148 / 62 conP: 0.186 CATH-ID: 3.30.360.10 Biliverdin reductase a. Chain: a. Engineered: yes --end-- VNG12990 one-of-top-five-correct: 0.530519149653601 CThresh: 3.565052 75 best_is: cluster00 VNG12990 cluster00 -> 1xxaA0 9.5870701 71 / 73 conP: 0.567 CATH-ID: 3.30.70.220 Arginine repressor. Chain: a, b, c, d, e, f. Fragment: initiator met p VNG12990 cluster01 -> 1g71A 8.7259440 344 / 73 conP: 0.069 NO-CATH VNG12990 cluster02 -> 1b94A0 6.6389511 244 / 73 conP: 0.096 CATH-ID: 3.40.600.10 Restriction endonuclease ecorv. Chain: a, b. Engineered: yes. Biologic VNG12990 cluster03 -> 1oneA2 8.6006878 310 / 73 conP: 0.091 CATH-ID: 3.20.20.120 Enolase. Chain: a, b. Synonym: 2-phospho-d-glycerate hydrolase. Ec: 4. VNG12990 cluster04 -> 1xxaA0 8.0208952 71 / 73 conP: 0.455 CATH-ID: 3.30.70.220 Arginine repressor. Chain: a, b, c, d, e, f. Fragment: initiator met p --end-- VNG12991 one-of-top-five-correct: 0.759943819000988 CThresh: 3.002015 84 best_is: cluster10 VNG12991 cluster00 -> 1qd1B1 10.314034 180 / 98 conP: 0.543 CATH-ID: 3.30.990.10 Formiminotransferase-cyclodeaminase. Chain: a, b. Fragment: formiminot VNG12991 cluster01 -> 1dquA1 10.251194 415 / 98 conP: 0.179 CATH-ID: 3.20.20.270 Isocitrate lyase. Chain: a. Engineered: yes VNG12991 cluster02 -> 1qd1B1 9.9417833 180 / 98 conP: 0.516 CATH-ID: 3.30.990.10 Formiminotransferase-cyclodeaminase. Chain: a, b. Fragment: formiminot VNG12991 cluster03 -> 1i6wA0 8.5454076 179 / 98 conP: 0.418 CATH-ID: 3.40.50.950 Lipase a. Chain: a, b. Engineered: yes VNG12991 cluster04 -> 1fiy02 9.4904216 374 / 98 conP: 0.190 CATH-ID: 3.20.20.60 Phosphoenolpyruvate carboxylase. Chain: null. Synonym: pepc. Engineere VNG12991 cluster10 -> 1l2qA 11.582547 457 / 98 conP: 0.192 NO-CATH --end-- VNG1300h one-of-top-five-correct: 0.236170456152017 CThresh: 6.973852 44 best_is: cluster11 VNG1300h cluster00 -> 1fjgC1 4.8464050 91 / 79 conP: 0.124 CATH-TRUNC VNG1300h cluster01 -> 2a3dA0 5.2110557 73 / 79 conP: 0.156 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes VNG1300h cluster02 -> 1qsmB0 5.7343046 149 / 79 conP: 0.099 CATH-ID: 3.40.630.30 Hpa2 histone acetyltransferase. Chain: a, b, c, d. Engineered: yes VNG1300h cluster03 -> 1cvl00 3.7423617 316 / 79 conP: 0.014 CATH-ID: 3.40.50.950 Triacylglycerol hydrolase. Chain: null. Other_details: chain break fro VNG1300h cluster04 -> 2a3dA0 4.6219648 73 / 79 conP: 0.135 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes VNG1300h cluster11 -> 1qhaA2 7.4484410 261 / 79 conP: 0.063 CATH-ID: 3.40.367.20 Hexokinase. Chain: a, b. Engineered: yes. Other_details: complexed wit --end-- VNG13034 one-of-top-five-correct: 0.418772345298135 CThresh: 7.390665 25 best_is: cluster08 VNG13034 cluster00 -> 1nkl00 8.5056473 78 / 112 conP: 0.390 CATH-ID: 1.10.225.10 Nk-lysin. Chain: null. Other_details: active by membrane-binding VNG13034 cluster01 -> 1rnl02 4.1977023 76 / 112 conP: 0.158 CATH-ID: 1.10.10.60 Nitrate/nitrite response regulator protein narl. Chain: null. Fragment VNG13034 cluster02 -> 1wdcB1 5.9188440 70 / 112 conP: 0.242 CATH-ID: 1.10.238.10 Scallop myosin. Chain: a, b, c. Fragment: proteolytic fragment, regula VNG13034 cluster03 -> 1pfkA2 4.3473846 126 / 112 conP: 0.125 CATH-ID: 3.40.50.460 Phosphofructokinase (r-state) complex with fructose-1,6-bisphosphate a VNG13034 cluster04 -> 1qi7A1 5.5829101 178 / 112 conP: 0.128 CATH-ID: 3.40.420.10 N-glycosidase. Chain: a. Ec: 3.2.2.22 VNG13034 cluster08 -> 1ile01 9.2019578 254 / 112 conP: 0.207 CATH-ID: 1.10.730.10 Isoleucyl-tRNA synthetase. Chain: null. Synonym: ilers. Engineered: cl --end-- VNG13060 one-of-top-five-correct: 0.515138861889543 CThresh: 4.883630 75 best_is: cluster12 VNG13060 cluster00 -> 1jwbB 7.5504511 240 / 100 conP: 0.193 NO-CATH VNG13060 cluster01 -> 1g6wB 5.4483910 242 / 100 conP: 0.114 NO-CATH VNG13060 cluster02 -> 1moq02 6.7266182 148 / 100 conP: 0.264 CATH-ID: 3.40.50.1940 Glucosamine 6-phosphate synthase. Chain: null. Synonym: l-glutamine\:d VNG13060 cluster03 -> 1d4oA0 7.0967478 177 / 100 conP: 0.246 CATH-ID: 3.40.50.70 NADP(h) transhydrogenase. Chain: a. Fragment: NADP(h) binding domain. VNG13060 cluster04 -> 1qdlB0 6.9605967 195 / 100 conP: 0.217 CATH-ID: 3.40.50.880 Anthranilate synthase (trpe-subunit). Chain: a. Fragment: aminodeoxyis VNG13060 cluster12 -> 4uagA1 9.4014750 92 / 100 conP: 0.535 CATH-ID: 3.40.50.1320 Udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase. Chain: a. Synonym: --end-- VNG13131 one-of-top-five-correct: 0.599070363016186 CThresh: 3.864816 75 best_is: cluster04 VNG13131 cluster00 -> 1mroB2 6.9147992 295 / 95 conP: 0.129 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: VNG13131 cluster01 -> 1lmb30 6.5159010 87 / 95 conP: 0.379 CATH-ID: 1.10.260.10 Lambda repressor/operator complex VNG13131 cluster02 -> 1aep00 8.4508222 153 / 95 conP: 0.396 CATH-ID: 1.20.120.20 Apolipophorin iii VNG13131 cluster03 -> 1cipA2 7.5207818 119 / 95 conP: 0.392 CATH-ID: 1.10.400.10 Guanine nucleotide-binding protein alpha-1 subunit. Chain: a. Synonym: VNG13131 cluster04 -> 1qgkA 9.9868452 876 / 95 conP: 0.005 NO-CATH --end-- VNG1314h one-of-top-five-correct: 0.283292428545246 CThresh: 4.374972 75 best_is: cluster13 VNG1314h cluster00 -> 3pvaA0 6.4688254 334 / 72 conP: 0.033 CATH-ID: 3.60.60.10 Penicillin v acylase. Chain: a, b, c, d, e, f, g, h. Synonym: penicill VNG1314h cluster01 -> 1frpA1 5.0130970 184 / 72 conP: 0.087 CATH-ID: 3.30.540.10 Fructose-1,6-bisphosphatase (d-fructose-1,6-bisphosphate 1-phosphohydr VNG1314h cluster02 -> 1fokA3 6.8927200 178 / 72 conP: 0.149 CATH-ID: 3.40.91.30 Foki restriction endonuclease. Chain: a. Synonym: r.Foki. Engineered: VNG1314h cluster03 -> 1fj7A0 7.1015669 101 / 72 conP: 0.282 CATH-ID: 3.30.70.330 Nucleolin rbd1. Chain: a. Synonym: protein c23. Engineered: yes VNG1314h cluster04 -> 1f3cA0 6.5392653 89 / 72 conP: 0.272 CATH-ID: 3.30.740.10 Dynein. Chain: a, b. Fragment: 8kda light chain. Synonym: protein inhi VNG1314h cluster13 -> 1ecbA1 7.1015669 321 / 72 conP: 0.044 CATH-ID: 3.60.20.10 Glutamine phosphoribosylpyrophosphate amidotransferase. Chain: a, b, c --end-- VNG1317h one-of-top-five-correct: 0.233816921712054 CThresh: 5.337636 75 best_is: cluster12 VNG1317h cluster00 -> 1e4fT4 6.5793224 89 / 64 conP: 0.206 CATH-ID: 3.30.420.70 Cell division protein ftsa. Chain: t. Engineered: yes VNG1317h cluster01 -> 1asyA1 6.1465287 137 / 64 conP: 0.119 CATH-ID: 2.40.50.10 Aspartyl tRNA synthetase (asprs) complexed with transfer ribonucleic a VNG1317h cluster02 -> 1asyA1 6.3629255 137 / 64 conP: 0.126 CATH-ID: 2.40.50.10 Aspartyl tRNA synthetase (asprs) complexed with transfer ribonucleic a VNG1317h cluster03 -> 1irsA0 6.8869873 112 / 64 conP: 0.180 CATH-ID: 2.30.29.30 Irs-1. Chain: a. Fragment: ptb domain. Synonym: insulin receptor subst VNG1317h cluster04 -> 1fgs02 5.0679781 70 / 64 conP: 0.171 CATH-ID: 3.30.790.10 Folylpolyglutamate synthetase. Chain: null. Synonym: fpgs. Engineered: VNG1317h cluster12 -> 1faoA0 7.0121161 100 / 64 conP: 0.206 CATH-ID: 2.30.29.30 Dual adaptor of phosphotyrosine and 3- phosphoinositides. Chain: a. Fr --end-- VNG1318h one-of-top-five-correct: 0.230281181207808 CThresh: 7.363214 25 best_is: cluster12 VNG1318h cluster00 -> 1igd00 5.9831338 61 / 112 conP: 0.257 CATH-ID: 3.10.20.10 Protein g VNG1318h cluster01 -> 1aw000 5.3357133 72 / 112 conP: 0.211 CATH-ID: 3.30.70.100 Menkes copper-transporting atpase. Chain: null. Fragment: fourth metal VNG1318h cluster02 -> 1gkxA 5.2490255 308 / 112 conP: 0.056 NO-CATH VNG1318h cluster03 -> 1fj7A0 5.6365954 101 / 112 conP: 0.196 CATH-ID: 3.30.70.330 Nucleolin rbd1. Chain: a. Synonym: protein c23. Engineered: yes VNG1318h cluster04 -> 1dik04 4.5422892 343 / 112 conP: 0.038 CATH-ID: 3.20.20.60 Pyruvate phosphate dikinase. Chain: null. Synonym: ppdk. Engineered: y VNG1318h cluster12 -> 1aw000 6.7834405 72 / 112 conP: 0.289 CATH-ID: 3.30.70.100 Menkes copper-transporting atpase. Chain: null. Fragment: fourth metal --end-- VNG13200 one-of-top-five-correct: 0.226422542357742 CThresh: 7.321173 25 best_is: cluster02 VNG13200 cluster00 -> 1ei5A2 5.9555817 82 / 106 conP: 0.221 CATH-ID: 2.40.128.50 D-aminopeptidase. Chain: a. Synonym: dap. Engineered: yes VNG13200 cluster01 -> 1eal00 6.7701761 127 / 106 conP: 0.210 CATH-ID: 2.40.128.20 Ileal lipid binding protein. Chain: null. Synonym: gastrotropin. Engin VNG13200 cluster02 -> 1ei5A2 6.8410478 82 / 106 conP: 0.268 CATH-ID: 2.40.128.50 D-aminopeptidase. Chain: a. Synonym: dap. Engineered: yes VNG13200 cluster03 -> 1dctA1 5.1259976 173 / 106 conP: 0.109 CATH-ID: 3.40.50.150 DNA (cytosine-5) methylase from haeiii. Chain: a, b. Synonym: methyltr VNG13200 cluster04 -> 1apq00 4.8132034 53 / 106 conP: 0.198 CATH-ID: 2.10.25.10 Complement protease c1r. Chain: null. Fragment: egf-like module. Engin --end-- VNG13232 one-of-top-five-correct: 0.404814013016293 CThresh: 3.012956 78 best_is: cluster08 VNG13232 cluster00 -> 1svcP2 5.5097598 63 / 55 conP: 0.264 CATH-ID: 1.10.15.20 Transcription factor nfkb. Chain: p. Fragment: p50 residues 2 - 366. E VNG13232 cluster01 -> 1rthA3 6.0921444 94 / 55 conP: 0.223 CATH-ID: 3.90.840.10 HIV-1 reverse transcriptase. Chain: a, b. Synonym: HIV-1 rt. Engineere VNG13232 cluster02 -> 1dik05 7.2244547 89 / 55 conP: 0.297 CATH-ID: 1.20.80.30 Pyruvate phosphate dikinase. Chain: null. Synonym: ppdk. Engineered: y VNG13232 cluster03 -> 1bvp13 5.9568949 96 / 55 conP: 0.212 CATH-ID: 1.10.170.10 Bluetongue virus 10 (usa) vp7 (btv-10 (usa) vp7) VNG13232 cluster04 -> 1c07A0 7.2244547 95 / 55 conP: 0.282 CATH-ID: 1.10.238.10 Epidermal growth factor receptor pathway substrate 15. Chain: a. Fragm VNG13232 cluster08 -> 1aisB1 8.3567650 99 / 55 conP: 0.341 CATH-ID: 1.10.472.10 Tata-binding protein. Chain: a. Fragment: residues 1 - 181. Synonym: t --end-- VNG1326h one-of-top-five-correct: 0.189049988410069 CThresh: 8.722386 25 best_is: cluster13 VNG1326h cluster00 -> 1oacA1 5.8280747 80 / 121 conP: 0.193 CATH-ID: 3.30.457.10 Copper amine oxidase. Chain: a, b. Ec: 1.4.3.6 VNG1326h cluster01 -> 1oacA1 4.4617625 80 / 121 conP: 0.139 CATH-ID: 3.30.457.10 Copper amine oxidase. Chain: a, b. Ec: 1.4.3.6 VNG1326h cluster02 -> 1cuk03 4.7949807 48 / 121 conP: 0.176 CATH-ID: 1.10.8.10 Ruva protein. Chain: null. Engineered: yes VNG1326h cluster03 -> 1bl0A2 4.4443231 60 / 121 conP: 0.152 CATH-ID: 1.10.10.60 DNA (5'- d( Gp Gp Gp Gp Ap Tp Tp Tp Ap Gp Cp Ap Ap Ap Ap Cp Gp Tp Gp G VNG1326h cluster04 -> 2fmr00 4.9280480 65 / 121 conP: 0.167 CATH-ID: 3.30.70.210 Fmr1 protein. Chain: null. Fragment: first kh domain residues 216 - 28 VNG1326h cluster13 -> 1oacA1 6.5119640 80 / 121 conP: 0.225 CATH-ID: 3.30.457.10 Copper amine oxidase. Chain: a, b. Ec: 1.4.3.6 --end-- VNG1329h one-of-top-five-correct: 0.297446630801529 CThresh: 6.998976 63 best_is: cluster10 VNG1329h cluster00 -> 1d5aA5 4.8768096 54 / 88 conP: 0.181 CATH-ID: 1.20.15.250 DNA polymerase. Chain: a. Engineered: yes VNG1329h cluster01 -> 1colA0 6.1500725 197 / 88 conP: 0.093 CATH-ID: 1.10.490.30 Colicin A (c-terminal domain) (pore-forming domain) VNG1329h cluster02 -> 1tfe02 6.1373296 45 / 88 conP: 0.254 CATH-ID: 1.20.12.10 Elongation factor ts. Chain: null. Fragment: ef-ts dimerization domain VNG1329h cluster03 -> 1i27A0 6.4215690 73 / 88 conP: 0.229 CATH-ID: 1.10.10.10 Transcription factor iif. Chain: a. Fragment: rap74 subunit, c-termina VNG1329h cluster04 -> 1hdj00 5.7951209 77 / 88 conP: 0.193 CATH-ID: 1.20.15.80 Human hsp40. Chain: null. Fragment: j-domain. Synonym: hdj-1. Engineer VNG1329h cluster10 -> 14psA0 8.1153288 226 / 88 conP: 0.125 CATH-ID: 1.20.190.20 14-3-3 protein zeta/delta. Chain: a, b. Engineered: yes. Biological_un --end-- VNG13441 one-of-top-five-correct: 0.399024065011252 CThresh: 3.005801 89 best_is: cluster07 VNG13441 cluster00 -> 1af701 6.3317191 80 / 57 conP: 0.278 CATH-ID: 1.10.155.10 Chemotaxis receptor methyltransferase cher. Chain: null. Engineered: y VNG13441 cluster01 -> 1f4qA0 6.4496071 161 / 57 conP: 0.129 CATH-ID: 1.10.238.10 Grancalcin. Chain: a, b. Engineered: yes VNG13441 cluster02 -> 1af701 6.7575462 80 / 57 conP: 0.304 CATH-ID: 1.10.155.10 Chemotaxis receptor methyltransferase cher. Chain: null. Engineered: y VNG13441 cluster03 -> 1jli00 6.0014989 112 / 57 conP: 0.191 CATH-ID: 1.20.120.200 Interleukin 3. Chain: null. Synonym: multi-csf. Engineered: yes. Mutat VNG13441 cluster04 -> 1ffh02 6.2255530 184 / 57 conP: 0.094 CATH-ID: 3.40.50.300 Ffh. Chain: null. Fragment: 'ng' gtpase fragment of ffh. Engineered: t VNG13441 cluster07 -> 1bu2A2 8.2420398 102 / 57 conP: 0.338 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes --end-- VNG13471 one-of-top-five-correct: 0.563011998960354 CThresh: 2.296359 100 best_is: cluster02 VNG13471 cluster00 -> 1bu2A1 9.3375551 112 / 65 conP: 0.476 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG13471 cluster01 -> 1bu2A1 8.4759973 112 / 65 conP: 0.415 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG13471 cluster02 -> 1bu2A1 9.5529446 112 / 65 conP: 0.492 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG13471 cluster03 -> 1coo00 6.9330855 81 / 65 conP: 0.388 CATH-ID: 1.10.359.10 RNA polymerase alpha subunit. Chain: null. Fragment: cooh-terminal dom VNG13471 cluster04 -> 1jn8A 8.0452184 123 / 65 conP: 0.358 NO-CATH --end-- VNG1349c one-of-top-five-correct: 0.437968885916111 CThresh: 5.645230 75 best_is: cluster03 VNG1349c cluster00 -> 1ema00 7.2055697 221 / 89 conP: 0.138 CATH-ID: 2.40.155.10 Green fluorescent protein. Chain: null. Engineered: yes. Mutation: 65 VNG1349c cluster01 -> 1eg9B0 6.8169348 193 / 89 conP: 0.151 CATH-ID: 3.10.30.90 Naphthalene 1,2-dioxygenase alpha subunit. Chain: a. Engineered: yes. VNG1349c cluster02 -> 2std00 6.7291497 162 / 89 conP: 0.181 CATH-ID: 3.10.30.90 Scytalone dehydratase. Chain: null. Engineered: yes VNG1349c cluster03 -> 1hcjA 9.1487445 226 / 89 conP: 0.212 NO-CATH VNG1349c cluster04 -> 1h6rA 7.5942047 227 / 89 conP: 0.146 NO-CATH --end-- VNG13500 one-of-top-five-correct: 0.578733883160288 CThresh: 7.020983 25 best_is: cluster16 VNG13500 cluster00 -> 2ng101 8.1771571 89 / 126 conP: 0.409 CATH-ID: 1.20.120.140 Signal sequence recognition protein ffh. Chain: null. Fragment: ng gtp VNG13500 cluster01 -> 1d5aA5 7.7330147 54 / 126 conP: 0.425 CATH-ID: 1.20.15.250 DNA polymerase. Chain: a. Engineered: yes VNG13500 cluster02 -> 1au1A0 9.1232755 166 / 126 conP: 0.372 CATH-ID: 1.20.120.210 Interferon-beta. Chain: a, b. Engineered: yes VNG13500 cluster03 -> 1ezfA 6.4473549 323 / 126 conP: 0.103 NO-CATH VNG13500 cluster04 -> 1e7aA2 7.4717996 90 / 126 conP: 0.359 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG13500 cluster16 -> 1bbhA0 10.482321 131 / 126 conP: 0.515 CATH-ID: 1.20.120.10 Cytochrome c' --end-- VNG13501 one-of-top-five-correct: 0.375672254849177 CThresh: 6.973940 45 best_is: cluster02 VNG13501 cluster00 -> 1jwfA 6.8608527 139 / 129 conP: 0.273 NO-CATH VNG13501 cluster01 -> 1brrA0 6.7584803 230 / 129 conP: 0.182 CATH-ID: 1.20.85.10 Bacteriorhodopsin. Chain: a, b, c. Synonym: br. Other_details: schiff VNG13501 cluster02 -> 1bmtA1 8.1327185 87 / 129 conP: 0.418 CATH-ID: 1.10.1240.10 Methionine synthase (b12-binding domains) VNG13501 cluster03 -> 1elkA0 7.2557705 153 / 129 conP: 0.281 CATH-ID: 1.25.40.90 Target of myb1. Chain: a, b. Fragment: vhs domain. Engineered: yes. Mu VNG13501 cluster04 -> 1dvkA0 6.7925342 149 / 129 conP: 0.259 CATH-ID: 1.20.940.10 Prp18. Chain: a, b. Engineered: yes --end-- VNG13521 one-of-top-five-correct: 0.210017565507804 CThresh: 6.998209 61 best_is: cluster16 VNG13521 cluster00 -> 1cqwA0 5.2603356 295 / 104 conP: 0.055 CATH-ID: 3.40.50.950 Haloalkane dehalogenase. 1-chlorohexane halidohydrolase. Chain: a. Eng VNG13521 cluster01 -> 1l0wA 5.9164424 580 / 104 conP: 0.010 NO-CATH VNG13521 cluster02 -> 1g28A0 4.8813441 104 / 104 conP: 0.158 CATH-ID: 3.30.450.20 Phy3 protein. Chain: a, b, c, d. Fragment: fmn-binding domain of chime VNG13521 cluster03 -> 1cbn00 5.6037793 46 / 104 conP: 0.255 CATH-ID: 3.30.70.10 Crambin VNG13521 cluster04 -> 5mdhA2 4.7957738 180 / 104 conP: 0.099 CATH-ID: 3.90.110.10 Malate dehydrogenase. Chain: a, b. Engineered: yes VNG13521 cluster16 -> 1l0wA 6.4767768 580 / 104 conP: 0.012 NO-CATH --end-- VNG13522 one-of-top-five-correct: 0.205873519209821 CThresh: 6.750745 75 best_is: cluster18 VNG13522 cluster00 -> 1inp01 5.3151396 47 / 87 conP: 0.217 CATH-ID: 4.10.460.10 Inositol polyphosphate 1-phosphatase (1-ptase) (inositol-1,4-bisphosph VNG13522 cluster01 -> 1csmA0 4.9650917 252 / 87 conP: 0.046 CATH-ID: 1.10.590.10 Chorismate mutase. Chain: a, b. Mutation: allele mutant, thr 226 ile. VNG13522 cluster02 -> 1cd1A1 6.5740413 178 / 87 conP: 0.122 CATH-ID: 3.30.500.10 Cd1. Chain: a, b, c, d. Fragment: alpha1, alpha2, alpha3, beta2-microg VNG13522 cluster03 -> 1k06A 6.4871374 807 / 87 conP: 0.001 NO-CATH VNG13522 cluster04 -> 1g8jA 4.9221114 820 / 87 conP: 0.000 NO-CATH VNG13522 cluster18 -> 1lhs00 6.6827657 153 / 87 conP: 0.149 CATH-ID: 1.10.490.10 Myoglobin (aquo-met) --end-- VNG13523 one-of-top-five-correct: 0.491073004656315 CThresh: 5.653233 75 best_is: cluster02 VNG13523 cluster00 -> 1fc2C0 6.0102569 43 / 141 conP: 0.425 CATH-ID: 4.10.310.10 Immunoglobulin fc and fragment b of protein a complex VNG13523 cluster01 -> 1elrA0 6.6481325 128 / 141 conP: 0.368 CATH-ID: 1.25.40.10 Tpr2a-domain of hop. Chain: a. Fragment: middle domain. Engineered: ye VNG13523 cluster02 -> 1qckA0 8.5533235 89 / 141 conP: 0.550 CATH-ID: 1.10.150.40 Barrier-to-autointegration factor. Chain: a, b. Engineered: yes VNG13523 cluster03 -> 1tgoA5 6.0197623 178 / 141 conP: 0.275 CATH-ID: 3.90.710.10 Thermostable b DNA polymerase. Chain: a. Engineered: yes VNG13523 cluster04 -> 1bw6A0 6.9472830 56 / 141 conP: 0.476 CATH-ID: 1.10.10.60 Centromere protein b. Chain: a. Fragment: DNA-binding domain. Engineer --end-- VNG13530 one-of-top-five-correct: 0.364946582553125 CThresh: 4.538377 75 best_is: cluster02 VNG13530 cluster00 -> 1bia02 5.7927602 181 / 80 conP: 0.130 CATH-ID: 3.30.930.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG13530 cluster01 -> 1dzoA0 7.7098884 120 / 80 conP: 0.307 CATH-ID: 3.30.700.10 Type iv pilin. Chain: a. Fragment: globular domain. Engineered: yes. M VNG13530 cluster02 -> 1cd1A1 8.0179876 178 / 80 conP: 0.226 CATH-ID: 3.30.500.10 Cd1. Chain: a, b, c, d. Fragment: alpha1, alpha2, alpha3, beta2-microg VNG13530 cluster03 -> 2if100 5.3035568 126 / 80 conP: 0.174 CATH-ID: 3.30.780.10 Eif1. Chain: null. Synonym: sui1. Engineered: yes. Other_details: n-te VNG13530 cluster04 -> 1joeA 6.1973470 148 / 80 conP: 0.183 NO-CATH --end-- VNG13531 one-of-top-five-correct: 0.322291086603153 CThresh: 4.513060 75 best_is: cluster13 VNG13531 cluster00 -> 1prxA1 6.3221028 150 / 65 conP: 0.133 CATH-ID: 3.40.30.10 Horf6. Chain: a, b. Engineered: yes. Mutation: c91s VNG13531 cluster01 -> 1gdtA1 7.1836606 98 / 65 conP: 0.256 CATH-ID: 3.40.50.1390 Gamma-delta resolvase. Chain: a, b. Synonym: gd resolvase. Engineered: VNG13531 cluster02 -> 1dtwB1 7.1836606 125 / 65 conP: 0.205 CATH-ID: 3.40.50.920 Branched-chain alpha-keto acid dehydrogenase alpha subunit. Chain: a. VNG13531 cluster03 -> 1ijwC 6.2644251 47 / 65 conP: 0.314 NO-CATH VNG13531 cluster04 -> 1qckA0 6.7528817 89 / 65 conP: 0.251 CATH-ID: 1.10.150.40 Barrier-to-autointegration factor. Chain: a, b. Engineered: yes VNG13531 cluster13 -> 1ft1A0 7.8298290 315 / 65 conP: 0.039 CATH-ID: 1.25.40.120 Protein farnesyltransferase. Chain: a, b. Engineered: yes --end-- VNG13532 one-of-top-five-correct: 0.185474602667887 CThresh: 6.959380 37 best_is: cluster18 VNG13532 cluster00 -> 1e7aA3 5.0791185 92 / 87 conP: 0.147 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG13532 cluster01 -> 1ee8A 5.3133679 266 / 87 conP: 0.043 NO-CATH VNG13532 cluster02 -> 1juoA 4.2075301 172 / 87 conP: 0.066 NO-CATH VNG13532 cluster03 -> 1ebfA2 4.3157185 175 / 87 conP: 0.066 CATH-ID: 3.90.750.10 Homoserine dehydrogenase. Chain: a, b. Engineered: yes VNG13532 cluster04 -> 1nf1A2 4.2075301 177 / 87 conP: 0.063 CATH-ID: 1.10.506.10 Neurofibromin. Chain: a. Fragment: gap related domain. Synonym: nf1-33 VNG13532 cluster18 -> 1ag200 6.4223032 103 / 87 conP: 0.188 CATH-ID: 1.10.790.10 Major prion protein. Chain: null. Fragment: domain 121 - 231. Synonym: --end-- VNG13533 one-of-top-five-correct: 0.279928423453836 CThresh: 6.731914 75 best_is: cluster05 VNG13533 cluster00 -> 1a8y01 6.8358925 124 / 85 conP: 0.183 CATH-ID: 3.40.30.10 Calsequestrin. Chain: null VNG13533 cluster01 -> 1dfuP0 5.9051397 94 / 85 conP: 0.180 CATH-ID: 2.40.240.10 Ribosomal protein l25. Chain: p. Engineered: yes. Other_details: prote VNG13533 cluster02 -> 1bxrA2 7.0344997 275 / 85 conP: 0.064 CATH-ID: 3.30.470.20 Carbamoyl-phosphate synthase. Chain: a, b, c, d, e, f, g, h. Engineere VNG13533 cluster03 -> 1bh9A0 5.1757254 45 / 85 conP: 0.210 CATH-ID: 1.10.20.10 Tafii18. Chain: a. Fragment: residues 31 - 75. Synonym: transcription VNG13533 cluster04 -> 1kvdB0 4.7257371 77 / 85 conP: 0.152 CATH-ID: 3.30.44.10 Smk toxin. Chain: a, b, c, d. Fragment: chain a and c are residues 19 VNG13533 cluster05 -> 1efuA1 7.8289281 172 / 85 conP: 0.167 CATH-ID: 3.40.50.300 Elongation factor tu. Chain: a, c. Synonym: elongation factor for tran --end-- VNG1357c one-of-top-five-correct: 0.576270953973658 CThresh: 4.948706 75 best_is: cluster04 VNG1357c cluster00 -> 1gpmA3 9.2717072 108 / 81 conP: 0.418 CATH-ID: 3.30.300.10 Gmp synthetase. Chain: a, b, c, d. Synonym: xmp aminase. Engineered: y VNG1357c cluster01 -> 2vik00 8.1805052 126 / 81 conP: 0.310 CATH-ID: 3.40.20.10 Villin 14t. Chain: null. Fragment: residues 1 - 126. Synonym: villin d VNG1357c cluster02 -> 1b7yB5 6.9713070 191 / 81 conP: 0.153 CATH-ID: 3.40.690.10 Phenylalanyl-tRNA synthetase. Chain: a. Synonym: phers. Phenylalanyl-t VNG1357c cluster03 -> 1mxa03 5.3590426 106 / 81 conP: 0.191 CATH-ID: 3.30.300.10 S-adenosylmethionine synthetase. Chain: null. Synonym: mat, atp\:l-met VNG1357c cluster04 -> 1qd1B2 10.539556 145 / 81 conP: 0.429 CATH-ID: 3.30.70.670 Formiminotransferase-cyclodeaminase. Chain: a, b. Fragment: formiminot --end-- VNG1362h one-of-top-five-correct: 0.460589581685622 CThresh: 6.966913 25 best_is: cluster01 VNG1362h cluster00 -> 1ytfD1 7.1030287 53 / 132 conP: 0.398 CATH-ID: 1.20.15.160 Yeast tata-box binding protein. Chain: a. Fragment: c-terminal 180 ami VNG1362h cluster01 -> 1ixmA1 9.0193370 59 / 132 conP: 0.527 CATH-ID: 1.20.15.100 Sporulation response regulatory protein. Chain: a, b. Synonym: spo0b. VNG1362h cluster02 -> 1repC2 6.6475811 91 / 132 conP: 0.322 CATH-ID: 1.10.10.10 DNA (5'- d( Cp Cp Tp Gp Tp Gp Ap Cp Ap Ap Ap Tp Tp Gp Cp Cp Cp Tp Cp A VNG1362h cluster03 -> 1dlc01 6.7289752 229 / 132 conP: 0.189 CATH-ID: 1.20.190.10 Delta-endotoxin cryiiia (bt13) VNG1362h cluster04 -> 1ytfD1 7.7899762 53 / 132 conP: 0.447 CATH-ID: 1.20.15.160 Yeast tata-box binding protein. Chain: a. Fragment: c-terminal 180 ami --end-- VNG13640 one-of-top-five-correct: 0.333194819815655 CThresh: 6.496284 75 best_is: cluster00 VNG13640 cluster00 -> 2blmA 8.3865513 260 / 86 conP: 0.111 NO-CATH VNG13640 cluster01 -> 2polA1 5.0470679 123 / 86 conP: 0.126 CATH-ID: 3.10.150.10 Pol iii (beta subunit) VNG13640 cluster02 -> 1qqnA4 5.9236253 84 / 86 conP: 0.204 CATH-ID: 3.90.640.10 D206s mutant of bovine 70 kilodalton heat shock protein. Chain: a. Fra VNG13640 cluster03 -> 2nef00 5.0644283 136 / 86 conP: 0.116 CATH-ID: 3.30.62.10 Negative factor (f-protein). Chain: null. Synonym: HIV-1 nef. Engineer VNG13640 cluster04 -> 1a81A2 6.6181316 45 / 86 conP: 0.301 CATH-ID: 1.10.930.10 Syk kinase. Chain: a, c, e, g, i, k. Fragment: tandem sh2 domain. Engi --end-- VNG1366h one-of-top-five-correct: 0.326158624751712 CThresh: 4.845679 75 best_is: cluster14 VNG1366h cluster00 -> 1apyB0 5.5734860 141 / 74 conP: 0.139 CATH-ID: 3.50.11.10 Aspartylglucosaminidase. Chain: a, b, c, d. Synonym: aga, glycosylaspa VNG1366h cluster01 -> 1elwA0 4.9521120 117 / 74 conP: 0.145 CATH-ID: 1.25.40.10 Tpr1-domain of hop. Chain: a, b. Fragment: n-terminal domain. Engineer VNG1366h cluster02 -> 9gafA2 6.4019846 143 / 74 conP: 0.168 CATH-ID: 3.50.11.10 Glycosylasparaginase. Chain: a, c. Synonym: glycoasparaginase,aspartyl VNG1366h cluster03 -> 9gafA2 7.0233586 143 / 74 conP: 0.194 CATH-ID: 3.50.11.10 Glycosylasparaginase. Chain: a, c. Synonym: glycoasparaginase,aspartyl VNG1366h cluster04 -> 1mb100 5.1592367 98 / 74 conP: 0.177 CATH-ID: 3.10.260.10 Mlu1-box binding protein. Chain: null. Fragment: DNA-binding domain. S VNG1366h cluster14 -> 1gsh02 7.8240646 105 / 74 conP: 0.303 CATH-ID: 3.30.470.20 Glutathione biosynthetic ligase. Chain: null. Synonym: glutathione syn --end-- VNG13742 one-of-top-five-correct: 0.535437400244953 CThresh: 2.898139 100 best_is: cluster17 VNG13742 cluster00 -> 1faeA1 8.8548983 425 / 66 conP: 0.025 CATH-ID: 1.50.10.10 Endo-1,4-beta-glucanase f. Chain: a. Fragment: catalytic module. Synon VNG13742 cluster01 -> 1j8mF1 7.5684895 87 / 66 conP: 0.389 CATH-ID: 1.20.120.140 Signal recognition 54 kda protein. Chain: f. Fragment: g-domain, gtpas VNG13742 cluster02 -> 1fiqB2 6.3808454 126 / 66 conP: 0.230 CATH-ID: 3.30.465.10 Xanthine oxidase. Chain: a. Fragment: residues 1-219. Synonym: xo. Xan VNG13742 cluster03 -> 1elkA0 9.2023144 153 / 66 conP: 0.336 CATH-ID: 1.25.40.90 Target of myb1. Chain: a, b. Fragment: vhs domain. Engineered: yes. Mu VNG13742 cluster04 -> 1j7rA0 6.0676792 77 / 66 conP: 0.315 CATH-ID: 1.10.238.10 Calcium vector protein. Chain: a. Fragment: n-terminal domain (residue VNG13742 cluster17 -> 1j8mF1 9.4981027 87 / 66 conP: 0.527 CATH-ID: 1.20.120.140 Signal recognition 54 kda protein. Chain: f. Fragment: g-domain, gtpas --end-- VNG13750 one-of-top-five-correct: 0.246397780637772 CThresh: 6.984818 27 best_is: cluster01 VNG13750 cluster00 -> 1frpA1 6.1032205 184 / 104 conP: 0.135 CATH-ID: 3.30.540.10 Fructose-1,6-bisphosphatase (d-fructose-1,6-bisphosphate 1-phosphohydr VNG13750 cluster01 -> 1a6jA0 7.0371111 150 / 104 conP: 0.205 CATH-ID: 3.40.930.10 Nitrogen regulatory iia protein. Chain: a, b. Synonym: iia-nitrogen, e VNG13750 cluster02 -> 1pxtA2 5.1693300 156 / 104 conP: 0.126 CATH-ID: 3.40.47.20 Peroxisomal 3-ketoacyl-coa thiolase VNG13750 cluster03 -> 1f6yA0 5.5967710 258 / 104 conP: 0.076 CATH-ID: 3.20.20.20 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransfera VNG13750 cluster04 -> 1f5mA0 6.8110905 176 / 104 conP: 0.169 CATH-ID: 3.30.450.40 Gaf. Chain: a, b. Engineered: yes --end-- VNG13751 one-of-top-five-correct: 0.347885645360385 CThresh: 6.923730 31 best_is: cluster02 VNG13751 cluster00 -> 1ytfD1 5.5932372 53 / 109 conP: 0.258 CATH-ID: 1.20.15.160 Yeast tata-box binding protein. Chain: a. Fragment: c-terminal 180 ami VNG13751 cluster01 -> 1qmgA2 6.9041696 293 / 109 conP: 0.098 CATH-ID: 1.10.572.10 Acetohydroxy-acid isomeroreductase. Chain: a, b, c, d. Synonym: keto-a VNG13751 cluster02 -> 1e68A0 8.2357868 70 / 109 conP: 0.401 CATH-ID: 1.20.225.10 Bacteriocin as-48. Chain: a. Fragment: bacteriocin as-48 residue 36-10 VNG13751 cluster03 -> 1abz00 5.3143675 38 / 109 conP: 0.261 CATH-ID: 1.20.860.10 Alpha-t-alpha. Chain: null. Synonym: ata. Engineered: yes. Other_detai VNG13751 cluster04 -> 1cb8A1 6.9041696 312 / 109 conP: 0.088 CATH-ID: 1.50.40.10 Chondroitinase ac. Chain: a. Ec: 4.2.2.5 --end-- VNG1376h one-of-top-five-correct: 0.371927567154753 CThresh: 3.003768 82 best_is: cluster03 VNG1376h cluster00 -> 1cf7B0 7.5609937 82 / 53 conP: 0.326 CATH-ID: 1.10.10.10 Transcription factor e2f-4. Chain: a. Fragment: DNA-binding domain. En VNG1376h cluster01 -> 1iso00 6.4970087 414 / 53 conP: 0.004 CATH-ID: 3.40.718.10 Isocitrate dehydrogenase. Chain: null. Synonym: oxalosuccinate decarbo VNG1376h cluster02 -> 1ao0A1 5.2711684 300 / 53 conP: 0.014 CATH-ID: 3.60.20.10 Glutamine phosphoribosylpyrophosphate amidotransferase. Chain: a, b, c VNG1376h cluster03 -> 1alo02 8.0189588 119 / 53 conP: 0.253 CATH-ID: 1.10.150.120 Aldehyde oxidoreductase. Chain: null. Synonym: molybdenum iron sulfur VNG1376h cluster04 -> 1fts01 7.1030287 84 / 53 conP: 0.292 CATH-ID: 1.20.120.140 Ftsy. Chain: null. Fragment: ng-domain residues 197 - 497. Engineered: --end-- VNG13831 one-of-top-five-correct: 0.194638672007627 CThresh: 6.977797 75 best_is: cluster14 VNG13831 cluster00 -> 1fapB0 4.6048448 95 / 76 conP: 0.108 CATH-ID: 1.20.120.150 Fk506-binding protein. Chain: a. Synonym: fkbp12. Engineered: yes. Fra VNG13831 cluster01 -> 1ibrB0 6.3365768 458 / 76 conP: 0.007 CATH-ID: 1.25.30.20 Ran. Chain: a, c. Engineered: yes. Importin beta subunit. Chain: b, d. VNG13831 cluster02 -> 1npc02 5.0526989 161 / 76 conP: 0.070 CATH-ID: 1.10.390.10 Neutral protease VNG13831 cluster03 -> 1dioA 4.3198367 551 / 76 conP: 0.002 NO-CATH VNG13831 cluster04 -> 1udg00 5.7150714 228 / 76 conP: 0.047 CATH-ID: 3.40.470.10 Uracil-DNA glycosylase. Chain: null. Other_details: encoded by the ul2 VNG13831 cluster14 -> 1e0cA1 6.8441284 144 / 76 conP: 0.128 CATH-ID: 3.40.250.10 Sulfurtransferase. Chain: a. Synonym: rhodanese. Engineered: yes --end-- VNG1384h one-of-top-five-correct: 0.28155882021489 CThresh: 5.067821 75 best_is: cluster18 VNG1384h cluster00 -> 2cblA3 6.0101414 86 / 62 conP: 0.188 CATH-ID: 3.30.505.10 Proto-oncogene cbl. Chain: a. Fragment: domain. Engineered: yes. Zap-7 VNG1384h cluster01 -> 2cblA3 7.2678842 86 / 62 conP: 0.249 CATH-ID: 3.30.505.10 Proto-oncogene cbl. Chain: a. Fragment: domain. Engineered: yes. Zap-7 VNG1384h cluster02 -> 2trxA0 6.2286140 108 / 62 conP: 0.161 CATH-ID: 3.40.30.10 Thioredoxin VNG1384h cluster03 -> 1es8A0 6.8840319 192 / 62 conP: 0.082 CATH-ID: 3.40.91.20 Restriction endonuclease bglii. Chain: a. Engineered: yes VNG1384h cluster04 -> 1pda03 6.9720629 87 / 62 conP: 0.232 CATH-ID: 3.30.160.40 Porphobilinogen deaminase VNG1384h cluster18 -> 1es8A0 7.6200674 192 / 62 conP: 0.100 CATH-ID: 3.40.91.20 Restriction endonuclease bglii. Chain: a. Engineered: yes --end-- VNG13880 one-of-top-five-correct: 0.369476702890815 CThresh: 3.003120 93 best_is: cluster13 VNG13880 cluster00 -> 3pgm00 6.0514009 230 / 61 conP: 0.065 CATH-ID: 3.40.50.1240 Phosphoglycerate mutase de-phospho enzyme VNG13880 cluster01 -> 1e96B0 6.2383724 185 / 61 conP: 0.110 CATH-ID: 1.25.40.10 Ras-related c3 botulinum toxin substrate 1. Chain: a. Synonym: rac1. E VNG13880 cluster02 -> 5tmpA0 6.7100284 210 / 61 conP: 0.096 CATH-ID: 3.40.50.300 Thymidylate kinase. Chain: a. Engineered: yes VNG13880 cluster03 -> 1i6kA 6.5818281 316 / 61 conP: 0.029 NO-CATH VNG13880 cluster04 -> 1l5jA 6.9295708 862 / 61 conP: 0.000 NO-CATH VNG13880 cluster13 -> 1bkdS2 7.8077408 242 / 61 conP: 0.092 CATH-ID: 1.10.840.10 H-ras. Chain: r. Fragment: residues 1-166. Synonym: p21. Engineered: y --end-- VNG13890 one-of-top-five-correct: 0.420255933502848 CThresh: 3.937700 75 best_is: cluster15 VNG13890 cluster00 -> 1he8A3 4.8468119 111 / 72 conP: 0.170 CATH-ID: 1.25.40.70 Phosphatidylinositol 3-kinase catalytic subunit, gamma isoform. Synony VNG13890 cluster01 -> 2trcP1 6.8927200 131 / 72 conP: 0.233 CATH-ID: 3.40.30.10 Transducin. Chain: b, g. Fragment: lys-c resistant fragment, the gamma VNG13890 cluster02 -> 1jgjA0 8.1458019 217 / 72 conP: 0.159 CATH-ID: 1.20.85.10 Sensory rhodopsin ii. Chain: a. Engineered: yes VNG13890 cluster03 -> 1e7aA4 7.1714042 86 / 72 conP: 0.338 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG13890 cluster04 -> 1fts01 5.9550050 84 / 72 conP: 0.268 CATH-ID: 1.20.120.140 Ftsy. Chain: null. Fragment: ng-domain residues 197 - 497. Engineered: VNG13890 cluster15 -> 1mroA3 8.5634959 227 / 72 conP: 0.162 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: --end-- VNG13891 one-of-top-five-correct: 0.374785971166052 CThresh: 6.979511 28 best_is: cluster14 VNG13891 cluster00 -> 1abmA0 5.7366809 198 / 127 conP: 0.161 CATH-ID: 3.90.149.10 Manganese superoxide dismutase VNG13891 cluster01 -> 1d09B1 5.8153669 93 / 127 conP: 0.259 CATH-ID: 3.30.70.140 Aspartate carbamoyltransferase catalytic chain. Chain: a, c. Engineere VNG13891 cluster02 -> 1dik06 4.7302768 98 / 127 conP: 0.199 CATH-ID: 3.30.470.20 Pyruvate phosphate dikinase. Chain: null. Synonym: ppdk. Engineered: y VNG13891 cluster03 -> 1copD0 4.0722070 66 / 127 conP: 0.197 CATH-ID: 3.30.240.10 Cro repressor. Chain: d, e. Engineered: yes VNG13891 cluster04 -> 1tys00 5.4570522 264 / 127 conP: 0.109 CATH-ID: 3.30.572.10 Thymidylate synthase mutant with cys 146 replaced by ser (c146s) VNG13891 cluster14 -> 1dik06 8.1704363 98 / 127 conP: 0.401 CATH-ID: 3.30.470.20 Pyruvate phosphate dikinase. Chain: null. Synonym: ppdk. Engineered: y --end-- VNG13950 one-of-top-five-correct: 0.265304357342197 CThresh: 7.105134 25 best_is: cluster13 VNG13950 cluster00 -> 1bebA0 6.2222429 156 / 117 conP: 0.190 CATH-ID: 2.40.128.20 Beta-lactoglobulin. Chain: a, b. Biological_unit: predominantly dimeri VNG13950 cluster01 -> 1eu8A2 4.6199448 217 / 117 conP: 0.093 CATH-ID: 3.40.190.10 Trehalose/maltose binding protein. Chain: a. Engineered: yes VNG13950 cluster02 -> 1din00 5.4460154 233 / 117 conP: 0.106 CATH-ID: 3.40.50.950 Dienelactone hydrolase. Chain: null. Synonym: dlh. Engineered: yes VNG13950 cluster03 -> 1g63A0 5.0440371 164 / 117 conP: 0.137 CATH-ID: 3.40.50.1950 Epidermin modifying enzyme epid. Chain: a, b, c, d, e, f, g, h, i, j, VNG13950 cluster04 -> 1b3jA1 5.8661767 170 / 117 conP: 0.163 CATH-ID: 3.30.500.10 Mhc class i homolog mic-a. Chain: a. Fragment: extracellular domain, r VNG13950 cluster13 -> 1exnA2 7.0676066 188 / 117 conP: 0.198 CATH-ID: 3.40.50.1010 5'-exonuclease. Chain: a, b. Synonym: 5'-nuclease. 5'-3' exonuclease. --end-- VNG1403h one-of-top-five-correct: 0.194880175953501 CThresh: 8.333162 25 best_is: cluster04 VNG1403h cluster00 -> 1vmoA0 4.8003939 163 / 130 conP: 0.120 CATH-ID: 2.100.10.20 Vitelline membrane outer layer protein i VNG1403h cluster01 -> 1ecrA2 4.6387998 77 / 130 conP: 0.171 CATH-ID: 3.30.54.10 Replication terminator protein. Chain: a. Synonym: tus. Engineered: ye VNG1403h cluster02 -> 1ipbA 5.3951741 191 / 130 conP: 0.122 NO-CATH VNG1403h cluster03 -> 1a28A0 5.1514404 251 / 130 conP: 0.086 CATH-ID: 1.10.565.10 Progesterone receptor. Chain: a, b. Fragment: ligand binding domain. E VNG1403h cluster04 -> 1bg8A0 6.2334147 76 / 130 conP: 0.247 CATH-ID: 1.10.890.10 Hdea. Chain: a, b, c. Synonym: 10k-s protein, hypothetical protein a --end-- VNG1405c one-of-top-five-correct: 0.475867750155397 CThresh: 7.911587 25 best_is: cluster03 VNG1405c cluster00 -> 1bia01 7.3150415 64 / 123 conP: 0.330 CATH-ID: 1.10.10.10 Bira bifunctional protein (acts as biotin operon repressor and biotin VNG1405c cluster01 -> 1bi2B1 7.9827296 73 / 123 conP: 0.362 CATH-ID: 1.10.10.10 Diphtheria toxin repressor. Chain: a, b. Synonym: dtxr. Engineered: ye VNG1405c cluster02 -> 1qgpA0 7.7696762 76 / 123 conP: 0.344 CATH-ID: 1.10.10.10 Double stranded RNA adenosine deaminase. Chain: a. Fragment: z-alpha d VNG1405c cluster03 -> 1smtB0 9.8206814 101 / 123 conP: 0.451 CATH-ID: 1.10.10.10 Transcriptional repressor smtb. Chain: a, b. Engineered: yes. Biologic VNG1405c cluster04 -> 1bi2B1 7.3647714 73 / 123 conP: 0.322 CATH-ID: 1.10.10.10 Diphtheria toxin repressor. Chain: a, b. Synonym: dtxr. Engineered: ye --end-- VNG1407c one-of-top-five-correct: 0.427762968912018 CThresh: 6.756505 75 best_is: cluster06 VNG1407c cluster00 -> 1bvqA0 6.0040567 139 / 131 conP: 0.240 CATH-ID: 3.10.129.10 4-hydroxybenzoyl coa thioesterase. Chain: a. Ec: 3.8.1.6 VNG1407c cluster01 -> 1dr9A2 6.1467878 95 / 131 conP: 0.294 CATH-ID: 2.60.40.10 T lymphocyte activation antigen. Chain: a. Fragment: extracellular reg VNG1407c cluster02 -> 1av401 6.9819943 87 / 131 conP: 0.356 CATH-ID: 3.10.30.70 Amine oxidase. Chain: null. Synonym: agao. Biological_unit: dimer VNG1407c cluster03 -> 1reqA1 5.1566916 522 / 131 conP: 0.031 CATH-ID: 3.20.20.240 Methylmalonyl-coa mutase. Chain: a, b, c, d. Engineered: yes. Other_de VNG1407c cluster04 -> 1ev0A0 7.0721368 58 / 131 conP: 0.399 CATH-ID: 3.30.1070.10 Mine. Chain: a, b. Fragment: mine topological specificity domain. Syno VNG1407c cluster06 -> 1molA0 8.5825492 94 / 131 conP: 0.458 CATH-ID: 3.10.30.10 Monellin (single-chain, fused) --end-- VNG14090 one-of-top-five-correct: 0.358730195187076 CThresh: 5.268183 75 best_is: cluster08 VNG14090 cluster00 -> 1adjA2 6.9110299 96 / 77 conP: 0.259 CATH-ID: 3.40.50.800 Histidyl-tRNA synthetase. Chain: a, b, c, d. Biological_unit: active a VNG14090 cluster01 -> 1qf6A5 6.7063807 102 / 77 conP: 0.238 CATH-ID: 3.40.50.800 Threonyl-tRNA synthetase. Chain: a. Synonym: thrrs. Threonine tRNA. Ch VNG14090 cluster02 -> 1qf6A5 8.3435739 102 / 77 conP: 0.334 CATH-ID: 3.40.50.800 Threonyl-tRNA synthetase. Chain: a. Synonym: thrrs. Threonine tRNA. Ch VNG14090 cluster03 -> 6mhtA2 5.5010870 98 / 77 conP: 0.186 CATH-ID: 3.10.90.10 Cytosine-specific methyltransferase hhai. Chain: a. Engineered: yes. B VNG14090 cluster04 -> 1plq00 5.4784859 258 / 77 conP: 0.050 CATH-ID: 3.70.10.10 Proliferating cell nuclear antigen (pcna) (synchrotron x-ray diffracti VNG14090 cluster08 -> 1httA2 8.3435739 98 / 77 conP: 0.342 CATH-ID: 3.40.50.800 Histidyl-tRNA synthetase. Chain: a, b, c, d. Synonym: histidine-tRNA l --end-- VNG14180 one-of-top-five-correct: 0.659787165873815 CThresh: 2.533266 100 best_is: cluster18 VNG14180 cluster00 -> 1a0b00 8.5179656 117 / 73 conP: 0.439 CATH-ID: 1.20.120.160 Aerobic respiration control sensor protein arcb. Chain: null. Fragment VNG14180 cluster01 -> 1abv00 7.3647714 105 / 73 conP: 0.386 CATH-ID: 1.10.520.20 Delta subunit of the f1f0-atp synthase. Chain: null. Fragment: n-termi VNG14180 cluster02 -> 1vom04 7.7767435 102 / 73 conP: 0.422 CATH-ID: 1.10.183.10 Myosin. Chain: null. Fragment: truncated at residue 762. Engineered: y VNG14180 cluster03 -> 1vom04 7.1587853 102 / 73 conP: 0.379 CATH-ID: 1.10.183.10 Myosin. Chain: null. Fragment: truncated at residue 762. Engineered: y VNG14180 cluster04 -> 2hmqA0 7.8940306 113 / 73 conP: 0.404 CATH-ID: 1.20.120.50 Hemerythrin (met) VNG14180 cluster18 -> 1b3uA0 10.597749 588 / 73 conP: 0.015 CATH-ID: 1.25.30.30 Protein phosphatase pp2a. Chain: a, b. Fragment: 65 kd regulatory subu --end-- VNG1423h one-of-top-five-correct: 0.333756381546438 CThresh: 1.413437 100 best_is: cluster09 VNG1423h cluster00 -> 1h72C 6.7390678 296 / 47 conP: 0.019 NO-CATH VNG1423h cluster01 -> 1mroB2 6.7390678 295 / 47 conP: 0.019 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: VNG1423h cluster02 -> 1xgsA1 6.5017464 218 / 47 conP: 0.053 CATH-ID: 3.90.230.10 Methionine aminopeptidase. Chain: a, b. Biological_unit: active as a m VNG1423h cluster03 -> 1bm9A0 6.2644251 120 / 47 conP: 0.185 CATH-ID: 1.10.10.10 Replication terminator protein. Chain: a, b. Synonym: rtp, ter. Engine VNG1423h cluster04 -> 1xgsA1 6.7390678 218 / 47 conP: 0.057 CATH-ID: 3.90.230.10 Methionine aminopeptidase. Chain: a, b. Biological_unit: active as a m VNG1423h cluster09 -> 1az902 6.9763891 266 / 47 conP: 0.031 CATH-ID: 3.90.230.10 Aminopeptidase p. Chain: null. Synonym: ampp. Biological_unit: homotet --end-- VNG1425h one-of-top-five-correct: 0.450453772250617 CThresh: 6.997252 69 best_is: cluster16 VNG1425h cluster00 -> 1az902 5.3300467 266 / 97 conP: 0.057 CATH-ID: 3.90.230.10 Aminopeptidase p. Chain: null. Synonym: ampp. Biological_unit: homotet VNG1425h cluster01 -> 1pdo00 7.0471428 129 / 97 conP: 0.210 CATH-ID: 3.40.50.510 Mannose permease. Chain: null. Fragment: iia ==man== domain, residues VNG1425h cluster02 -> 1nal10 6.0932005 291 / 97 conP: 0.059 CATH-ID: 3.20.20.70 N-acetylneuraminate lyase. Chain: 1, 2, 3, 4. Ec: 4.1.3.3 VNG1425h cluster03 -> 1egzA0 6.6970640 291 / 97 conP: 0.070 CATH-ID: 3.20.20.80 Endoglucanase z. Chain: a, b, c. Fragment: catalytic domain. Synonym: VNG1425h cluster04 -> 1az902 5.8703098 266 / 97 conP: 0.066 CATH-ID: 3.90.230.10 Aminopeptidase p. Chain: null. Synonym: ampp. Biological_unit: homotet VNG1425h cluster16 -> 1ihp01 9.7181811 297 / 97 conP: 0.146 CATH-ID: 3.40.50.1240 Phytase. Chain: null. Synonym: myo-inositol-hexakisphosphate-3-phospho --end-- VNG1426h one-of-top-five-correct: 0.374889685517699 CThresh: 6.735363 75 best_is: cluster14 VNG1426h cluster00 -> 1cb8A1 8.2038442 312 / 91 conP: 0.080 CATH-ID: 1.50.40.10 Chondroitinase ac. Chain: a. Ec: 4.2.2.5 VNG1426h cluster01 -> 1dn1A3 7.2545216 120 / 91 conP: 0.225 CATH-ID: 1.25.40.60 Syntaxin binding protein 1. Chain: a. Synonym: nsec1. Engineered: yes. VNG1426h cluster02 -> 1qhaA2 5.9057345 261 / 91 conP: 0.062 CATH-ID: 3.40.367.20 Hexokinase. Chain: a, b. Engineered: yes. Other_details: complexed wit VNG1426h cluster03 -> 1mun02 6.3962695 112 / 91 conP: 0.194 CATH-ID: 1.10.340.10 Adenine glycosylase. Chain: null. Fragment: catalytic domain. Engineer VNG1426h cluster04 -> 1a5t03 7.7224019 116 / 91 conP: 0.255 CATH-ID: 1.20.272.10 Delta prime. Chain: null. Synonym: holb. Engineered: yes. Biological_u VNG1426h cluster14 -> 1bkdS1 8.8806586 189 / 91 conP: 0.214 CATH-ID: 1.20.870.10 H-ras. Chain: r. Fragment: residues 1-166. Synonym: p21. Engineered: y --end-- VNG1427h one-of-top-five-correct: 0.315699286178507 CThresh: 5.901486 75 best_is: cluster14 VNG1427h cluster00 -> 1aisB1 6.4421502 99 / 79 conP: 0.211 CATH-ID: 1.10.472.10 Tata-binding protein. Chain: a. Fragment: residues 1 - 181. Synonym: t VNG1427h cluster01 -> 1oasA1 5.4720043 193 / 79 conP: 0.081 CATH-ID: 3.40.50.1900 O-acetylserine sulfhydrylase. Chain: a, b. Synonym: cystein synthase. VNG1427h cluster02 -> 1yub02 5.3624748 80 / 79 conP: 0.188 CATH-ID: 1.10.221.10 Rrna methyltransferase. Chain: null. Synonym: ermam. Engineered: yes. VNG1427h cluster03 -> 1fqvB0 5.5538239 137 / 79 conP: 0.129 CATH-ID: 3.30.710.10 Skp2. Chain: a, c, e, g, i, k, m, o. Fragment: 101-436. Synonym: cycli VNG1427h cluster04 -> 1bu2A1 5.3317632 112 / 79 conP: 0.147 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG1427h cluster14 -> 1mla02 8.0576389 232 / 79 conP: 0.116 CATH-ID: 3.40.366.10 Malonyl-coenzyme a acyl carrier protein transacylase. Chain: null. Syn --end-- VNG1438h one-of-top-five-correct: 0.210433971312297 CThresh: 5.825868 75 best_is: cluster08 VNG1438h cluster00 -> 1aab00 5.3148615 83 / 82 conP: 0.192 CATH-ID: 1.10.30.10 High mobility group protein. Chain: null. Fragment: fragment a (residu VNG1438h cluster01 -> 1cnt10 5.7319448 150 / 82 conP: 0.131 CATH-ID: 1.20.120.200 Ciliary neurotrophic factor. Chain: 1, 2, 3, 4. Synonym: cntf. Enginee VNG1438h cluster02 -> 1azsC2 4.8502946 115 / 82 conP: 0.136 CATH-ID: 1.10.400.10 Vc1. Chain: a. Fragment: c1a domain of adenylyl cyclase. Engineered: y VNG1438h cluster03 -> 1tc3C0 5.5365846 51 / 82 conP: 0.249 CATH-ID: 1.10.10.60 DNA. Chain: a, b. Engineered: yes. Tc3 transposase. Chain: c. Fragment VNG1438h cluster04 -> 1azsC2 5.7319448 115 / 82 conP: 0.169 CATH-ID: 1.10.400.10 Vc1. Chain: a. Fragment: c1a domain of adenylyl cyclase. Engineered: y VNG1438h cluster08 -> 1qsaA1 6.4529225 363 / 82 conP: 0.029 CATH-ID: 1.25.20.10 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein --end-- VNG1440h one-of-top-five-correct: 0.436456577839037 CThresh: 6.999817 54 best_is: cluster00 VNG1440h cluster00 -> 1e7aA4 9.1542080 86 / 115 conP: 0.453 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG1440h cluster01 -> 1ns1A0 6.2302039 73 / 115 conP: 0.279 CATH-ID: 1.10.287.10 Nonstructural protein 1. Chain: a, b. Fragment: RNA-binding domain, re VNG1440h cluster02 -> 1dg3A1 6.3925355 300 / 115 conP: 0.092 CATH-ID: 1.20.1000.10 Interferon-induced guanylate-binding protein 1. Chain: a. Fragment: fu VNG1440h cluster03 -> 1bmtA1 6.4871374 87 / 115 conP: 0.276 CATH-ID: 1.10.1240.10 Methionine synthase (b12-binding domains) VNG1440h cluster04 -> 2occC2 8.5660876 191 / 115 conP: 0.270 CATH-ID: 1.20.120.80 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, --end-- VNG14420 one-of-top-five-correct: 0.312103321972858 CThresh: 2.588681 100 best_is: cluster19 VNG14420 cluster00 -> 1jwyA 6.0222255 753 / 73 conP: 0.001 NO-CATH VNG14420 cluster01 -> 1a3wA1 5.8142472 155 / 73 conP: 0.197 CATH-ID: 3.40.50.50 Pyruvate kinase. Chain: a, b. Biological_unit: tetramer VNG14420 cluster02 -> 1f08A0 5.3186894 148 / 73 conP: 0.186 CATH-ID: 3.30.70.750 Replication protein e1. Chain: a, b. Fragment: DNA-binding domain. Eng VNG14420 cluster03 -> 1bl0A1 5.5958156 56 / 73 conP: 0.374 CATH-ID: 1.10.10.60 DNA (5'- d( Gp Gp Gp Gp Ap Tp Tp Tp Ap Gp Cp Ap Ap Ap Ap Cp Gp Tp Gp G VNG14420 cluster04 -> 1pxtA2 5.3049106 156 / 73 conP: 0.174 CATH-ID: 3.40.47.20 Peroxisomal 3-ketoacyl-coa thiolase VNG14420 cluster19 -> 1fvrA 6.6461605 299 / 73 conP: 0.073 NO-CATH --end-- VNG14421 one-of-top-five-correct: 0.485659822376507 CThresh: 4.836007 75 best_is: cluster05 VNG14421 cluster00 -> 1pah00 6.0595971 308 / 69 conP: 0.029 CATH-ID: 1.10.800.10 Phenylalanine hydroxylase. Chain: null. Fragment: catalytic domain. En VNG14421 cluster01 -> 1cf9A2 7.6473864 121 / 69 conP: 0.241 CATH-ID: 1.10.422.10 Catalase hpii. Chain: a, b, c, d. Engineered: yes. Mutation: yes VNG14421 cluster02 -> 1bu2A1 5.9520688 112 / 69 conP: 0.175 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG14421 cluster03 -> 1guxB0 6.8011957 141 / 69 conP: 0.168 CATH-ID: 1.10.472.10 Retinoblastoma protein. Chain: a, b. Fragment: pocket domain. Engineer VNG14421 cluster04 -> 2hmqA0 6.5896480 113 / 69 conP: 0.202 CATH-ID: 1.20.120.50 Hemerythrin (met) VNG14421 cluster05 -> 1ocrE0 9.7628633 109 / 69 conP: 0.397 CATH-ID: 1.25.40.40 CytochromE C oxidase. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, --end-- VNG1446h one-of-top-five-correct: 0.393749360024865 CThresh: 5.316504 75 best_is: cluster08 VNG1446h cluster00 -> 1fokA3 6.9415989 178 / 76 conP: 0.139 CATH-ID: 3.40.91.30 Foki restriction endonuclease. Chain: a. Synonym: r.Foki. Engineered: VNG1446h cluster01 -> 1poxA3 6.3314528 190 / 76 conP: 0.108 CATH-ID: 3.40.50.970 Pyruvate oxidase mutant with pro 178 replaced by ser, ser 188 replaced VNG1446h cluster02 -> 1hc7A 5.7150714 464 / 76 conP: 0.008 NO-CATH VNG1446h cluster03 -> 1eemA2 5.9299298 115 / 76 conP: 0.177 CATH-ID: 1.20.1050.10 Glutathione-s-transferase. Chain: a. Engineered: yes VNG1446h cluster04 -> 1l5vA 5.6227010 796 / 76 conP: 0.000 NO-CATH VNG1446h cluster08 -> 1avqA0 8.7969785 228 / 76 conP: 0.148 CATH-ID: 3.90.320.10 Lambda exonuclease. Chain: a, b, c. Synonym: red alpha. Engineered: ye --end-- VNG1448h one-of-top-five-correct: 0.352753567308776 CThresh: 4.379851 75 best_is: cluster00 VNG1448h cluster00 -> 1epaA0 7.8465464 160 / 78 conP: 0.243 CATH-ID: 2.40.128.20 Epididymal retinoic acid-binding protein (androgen dependent secretory VNG1448h cluster01 -> 1a1s01 7.4863919 152 / 78 conP: 0.237 CATH-ID: 3.40.50.1370 Ornithine carbamoyltransferase. Chain: null. Synonym: ornithine transc VNG1448h cluster02 -> 2dri01 6.4736947 125 / 78 conP: 0.228 CATH-ID: 3.40.50.2900 D-ribose-binding protein complexed with beta-d-ribose VNG1448h cluster03 -> 2dri01 6.3705462 125 / 78 conP: 0.223 CATH-ID: 3.40.50.2900 D-ribose-binding protein complexed with beta-d-ribose VNG1448h cluster04 -> 1jmcA2 6.2632853 124 / 78 conP: 0.219 CATH-ID: 2.40.50.10 Replication protein a. Chain: a. Fragment: 70kda DNA-binding subunit, --end-- VNG14551 one-of-top-five-correct: 0.376503812700041 CThresh: 6.997829 40 best_is: cluster07 VNG14551 cluster00 -> 1a0p01 7.2545216 91 / 117 conP: 0.323 CATH-ID: 1.10.150.130 Site-specific recombinase xerd. Chain: null. Engineered: yes VNG14551 cluster01 -> 1dik05 7.1951762 89 / 117 conP: 0.322 CATH-ID: 1.20.80.30 Pyruvate phosphate dikinase. Chain: null. Synonym: ppdk. Engineered: y VNG14551 cluster02 -> 1fz1F2 7.8940306 73 / 117 conP: 0.389 CATH-ID: 1.20.88.10 Methane monooxygenase component a, alpha chain. Chain: a, b. Synonym: VNG14551 cluster03 -> 1ncs00 6.5017464 47 / 117 conP: 0.333 CATH-ID: 3.30.160.60 Transcriptional factor swi5. Chain: null. Fragment: zinc finger DNA bi VNG14551 cluster04 -> 1dpe03 6.2846672 219 / 117 conP: 0.143 CATH-ID: 3.10.105.10 Dipeptide-binding protein. Chain: null. Synonym: dipeptide permease VNG14551 cluster07 -> 1dik05 8.4264988 89 / 117 conP: 0.403 CATH-ID: 1.20.80.30 Pyruvate phosphate dikinase. Chain: null. Synonym: ppdk. Engineered: y --end-- VNG1456h one-of-top-five-correct: 0.142016808774663 CThresh: 9.205168 25 best_is: cluster10 VNG1456h cluster00 -> 1isvA 5.5902576 436 / 125 conP: 0.028 NO-CATH VNG1456h cluster01 -> 1dh0A1 4.7615682 270 / 125 conP: 0.054 CATH-ID: 3.90.77.20 Adenosine kinase. Chain: a. Engineered: yes VNG1456h cluster02 -> 1e1aA0 5.6443991 312 / 125 conP: 0.055 CATH-ID: 2.130.10.50 Diisopropylfluorophosphatase. Chain: a. Synonym: dfpase. Engineered: y VNG1456h cluster03 -> 1hsm00 4.3189092 79 / 125 conP: 0.127 CATH-ID: 1.10.30.10 High mobility group protein 1 (hmg1) box 2, complexed with mercaptoeth VNG1456h cluster04 -> 1iku02 5.1163245 92 / 125 conP: 0.145 CATH-ID: 1.10.238.10 Recoverin. Chain: null. Engineered: yes VNG1456h cluster10 -> 1i9yA 5.7023671 336 / 125 conP: 0.049 NO-CATH --end-- VNG1459h one-of-top-five-correct: 0.1847207390843 CThresh: 3.758993 75 best_is: cluster02 VNG1459h cluster00 -> 1grj02 4.3658542 77 / 47 conP: 0.128 CATH-ID: 3.10.70.10 Grea transcript cleavage factor from escherichia coli VNG1459h cluster01 -> 1ekcC0 3.9979589 50 / 47 conP: 0.164 CATH-ID: 4.10.640.10 30s ribosomal protein s6. Chain: a, f. 30s ribosomal protein s15. Chai VNG1459h cluster02 -> 1l9xA 5.8680282 288 / 47 conP: 0.010 NO-CATH VNG1459h cluster03 -> 1hdoA0 4.8404969 205 / 47 conP: 0.024 CATH-ID: 3.40.50.720 Biliverdin ix beta reductase. Chain: a. Synonym: flavin reductase (ec VNG1459h cluster04 -> 1fbxA2 5.0778183 136 / 47 conP: 0.069 CATH-ID: 3.50.11.20 Gtp cyclohydrolase i. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, --end-- VNG1461h one-of-top-five-correct: 0.527509956956744 CThresh: 4.291214 75 best_is: cluster19 VNG1461h cluster00 -> 1d1dA1 7.2242911 140 / 69 conP: 0.207 CATH-ID: 1.10.375.10 Capsid protein. Chain: a. Engineered: yes. Mutation: yes VNG1461h cluster01 -> 1dg3A1 8.9912217 300 / 69 conP: 0.079 CATH-ID: 1.20.1000.10 Interferon-induced guanylate-binding protein 1. Chain: a. Fragment: fu VNG1461h cluster02 -> 1glqA2 9.5513156 108 / 69 conP: 0.414 CATH-ID: 1.20.1050.10 Glutathione s-transferase yfyf (class pi) complexed with s-(p-nitroben VNG1461h cluster03 -> 1glqA2 9.1282202 108 / 69 conP: 0.385 CATH-ID: 1.20.1050.10 Glutathione s-transferase yfyf (class pi) complexed with s-(p-nitroben VNG1461h cluster04 -> 1ag200 7.2242911 103 / 69 conP: 0.276 CATH-ID: 1.10.790.10 Major prion protein. Chain: null. Fragment: domain 121 - 231. Synonym: VNG1461h cluster19 -> 1bgf00 9.9744109 124 / 69 conP: 0.405 CATH-ID: 1.10.532.10 Stat-4. Chain: null. Fragment: n-terminal domain. Engineered: yes. Bio --end-- VNG14622 one-of-top-five-correct: 0.383467226191345 CThresh: 5.836915 75 best_is: cluster09 VNG14622 cluster00 -> 1uaaA4 6.8335586 162 / 109 conP: 0.240 CATH-ID: 1.10.486.10 Atp-dependent DNA helicase rep. Chain: a, b. Engineered: yes. DNA (5'- VNG14622 cluster01 -> 1yrnA0 7.3290605 49 / 109 conP: 0.430 CATH-ID: 1.10.10.60 Mating-type protein a-1. Chain: a. Domain: homeodomain. Synonym: mat a VNG14622 cluster02 -> 1akhB0 7.2825408 78 / 109 conP: 0.382 CATH-ID: 1.10.10.60 Mating-type protein a-1. Chain: a. Engineered: yes. Mating-type protei VNG14622 cluster03 -> 1a0p01 7.5293592 91 / 109 conP: 0.379 CATH-ID: 1.10.150.130 Site-specific recombinase xerd. Chain: null. Engineered: yes VNG14622 cluster04 -> 1yrnA0 7.3290605 49 / 109 conP: 0.430 CATH-ID: 1.10.10.60 Mating-type protein a-1. Chain: a. Domain: homeodomain. Synonym: mat a VNG14622 cluster09 -> 1rpjA1 8.1630899 139 / 109 conP: 0.350 CATH-ID: 3.40.50.8600 Precursor of periplasmic sugar receptor. Chain: a. Synonym: albp. Biol --end-- VNG14642 one-of-top-five-correct: 0.435647414487394 CThresh: 7.185573 25 best_is: cluster11 VNG14642 cluster00 -> 1e2aA0 6.4558222 102 / 116 conP: 0.251 CATH-ID: 1.20.1040.30 Enzyme iia. Chain: a, b, c. Synonym: enzyme iii, lactose-specific iia VNG14642 cluster01 -> 1a6q02 8.2820295 69 / 116 conP: 0.409 CATH-ID: 1.10.920.10 Phosphatase 2c. Chain: null. Engineered: yes VNG14642 cluster02 -> 1k40A 5.9889929 126 / 116 conP: 0.202 NO-CATH VNG14642 cluster03 -> 2a3dA0 7.7767435 73 / 116 conP: 0.369 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes VNG14642 cluster04 -> 1k04A 6.4790951 142 / 116 conP: 0.210 NO-CATH VNG14642 cluster11 -> 1kehA 9.2066720 683 / 116 conP: 0.022 NO-CATH --end-- VNG14644 one-of-top-five-correct: 0.425789907440356 CThresh: 5.223587 75 best_is: cluster08 VNG14644 cluster00 -> 1moq02 5.7640626 148 / 116 conP: 0.245 CATH-ID: 3.40.50.1940 Glucosamine 6-phosphate synthase. Chain: null. Synonym: l-glutamine\:d VNG14644 cluster01 -> 1volA1 7.8253283 97 / 116 conP: 0.444 CATH-ID: 1.10.472.10 Transcription factor iib. Chain: a. Fragment: residues 113 - 316. Engi VNG14644 cluster02 -> 1amoA4 8.0559927 160 / 116 conP: 0.369 CATH-ID: 3.40.50.80 NADPH-cytochrome p450 reductase. Chain: a, b. Fragment: hydrophilic do VNG14644 cluster03 -> 1yrnA0 7.0946598 49 / 116 conP: 0.464 CATH-ID: 1.10.10.60 Mating-type protein a-1. Chain: a. Domain: homeodomain. Synonym: mat a VNG14644 cluster04 -> 1e7aA2 6.3995012 90 / 116 conP: 0.356 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG14644 cluster08 -> 1k3fA 8.2068318 253 / 116 conP: 0.258 NO-CATH --end-- VNG1466h one-of-top-five-correct: 0.230814348837388 CThresh: 2.713016 100 best_is: cluster02 VNG1466h cluster00 -> 1pysB6 6.2539125 96 / 43 conP: 0.170 CATH-ID: 3.30.70.380 Phenylalanyl-tRNA synthetase. Chain: a, b. Biological_unit: tetramer o VNG1466h cluster01 -> 1f0kA2 4.5483231 176 / 43 conP: 0.033 CATH-ID: 3.40.50.2000 Udp-n-acetylglucosamine-n-acetylmuramyl- (pentapeptide) pyrophosphoryl VNG1466h cluster02 -> 1d09B1 6.2539125 93 / 43 conP: 0.177 CATH-ID: 3.30.70.140 Aspartate carbamoyltransferase catalytic chain. Chain: a, c. Engineere VNG1466h cluster03 -> 1apyB0 5.2792900 141 / 43 conP: 0.069 CATH-ID: 3.50.11.10 Aspartylglucosaminidase. Chain: a, b, c, d. Synonym: aga, glycosylaspa VNG1466h cluster04 -> 1l8bA 5.7666012 177 / 43 conP: 0.046 NO-CATH --end-- VNG1468h one-of-top-five-correct: 0.295009682320859 CThresh: 6.841115 75 best_is: cluster13 VNG1468h cluster00 -> 1kpsB 7.8222863 156 / 88 conP: 0.192 NO-CATH VNG1468h cluster01 -> 1agsA 6.5431238 221 / 88 conP: 0.089 NO-CATH VNG1468h cluster02 -> 1a28A0 5.9361600 251 / 88 conP: 0.061 CATH-ID: 1.10.565.10 Progesterone receptor. Chain: a, b. Fragment: ligand binding domain. E VNG1468h cluster03 -> 1a9100 7.9257221 79 / 88 conP: 0.311 CATH-ID: 1.20.20.10 F1fo atpase subunit c. Chain: null. Synonym: proteolipid, dccd-binding VNG1468h cluster04 -> 1bucA3 5.3639700 141 / 88 conP: 0.116 CATH-ID: 1.20.140.10 Butyryl-coa dehydrogenase (bcad) (bacterial short-chain acyl-coa dehyd VNG1468h cluster13 -> 1cb5A 8.0117369 453 / 88 conP: 0.023 NO-CATH --end-- VNG14722 one-of-top-five-correct: 0.56633315603734 CThresh: 5.524965 75 best_is: cluster05 VNG14722 cluster00 -> 1eqfA1 7.7041454 142 / 104 conP: 0.315 CATH-ID: 1.20.920.10 RNA polymerase ii transcription initiation factor. Chain: a. Fragment: VNG14722 cluster01 -> 1i27A0 6.3348410 73 / 104 conP: 0.330 CATH-ID: 1.10.10.10 Transcription factor iif. Chain: a. Fragment: rap74 subunit, c-termina VNG14722 cluster02 -> 2a3dA0 9.3581913 73 / 104 conP: 0.540 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes VNG14722 cluster03 -> 1wjbA0 5.6000706 55 / 104 conP: 0.310 CATH-ID: 1.10.10.200 HIV-1 integrase. Chain: a, b VNG14722 cluster04 -> 1fipA0 6.3120266 73 / 104 conP: 0.328 CATH-ID: 1.10.1230.10 Fis protein (factor for inversion stimulation) mutant with pro 61 repl VNG14722 cluster05 -> 2a3dA0 10.166092 73 / 104 conP: 0.598 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes --end-- VNG1473h one-of-top-five-correct: 0.491190486475896 CThresh: 4.263899 75 best_is: cluster18 VNG1473h cluster00 -> 1jjuA 7.9789722 489 / 81 conP: 0.021 NO-CATH VNG1473h cluster01 -> 1acf00 6.1824125 125 / 81 conP: 0.229 CATH-ID: 3.30.450.30 Profilin i VNG1473h cluster02 -> 1e4wH 6.8741558 209 / 81 conP: 0.149 NO-CATH VNG1473h cluster03 -> 1jjuA 6.9713070 489 / 81 conP: 0.016 NO-CATH VNG1473h cluster04 -> 1jjuA 6.9713070 489 / 81 conP: 0.016 NO-CATH VNG1473h cluster18 -> 1ospO1 9.2907568 73 / 81 conP: 0.533 CATH-ID: 2.30.70.11 Fab 184.1. Chain: l, h. Outer surface protein a. Chain: o. Synonym: os --end-- VNG1479h one-of-top-five-correct: 0.307272803759461 CThresh: 4.385656 75 best_is: cluster00 VNG1479h cluster00 -> 1qhaA2 7.7408056 261 / 58 conP: 0.047 CATH-ID: 3.40.367.20 Hexokinase. Chain: a, b. Engineered: yes. Other_details: complexed wit VNG1479h cluster01 -> 1ala01 5.7914965 73 / 58 conP: 0.212 CATH-ID: 1.10.220.10 Annexin v VNG1479h cluster02 -> 1ddbA0 7.0721368 195 / 58 conP: 0.082 CATH-ID: 1.10.437.10 Bid. Chain: a. Engineered: yes. Biological_unit: monomer VNG1479h cluster03 -> 1lddA 7.0721368 74 / 58 conP: 0.278 NO-CATH VNG1479h cluster04 -> 1lddA 6.1805783 74 / 58 conP: 0.229 NO-CATH --end-- VNG1480c one-of-top-five-correct: 0.734713807400959 CThresh: 6.128215 75 best_is: cluster06 VNG1480c cluster00 -> 1jud01 10.658273 145 / 126 conP: 0.559 CATH-ID: 3.40.50.1000 L-2-haloacid dehalogenase. Chain: null. Engineered: yes VNG1480c cluster01 -> 1b5tA0 8.1306661 275 / 126 conP: 0.229 CATH-ID: 3.20.20.220 Methylenetetrahydrofolate reductase. Chain: a, b, c. Engineered: yes VNG1480c cluster02 -> 2scpA0 6.5629428 174 / 126 conP: 0.249 CATH-ID: 1.10.238.10 Sarcoplasmic calcium-binding protein VNG1480c cluster03 -> 1gsoA1 8.6505476 94 / 126 conP: 0.485 CATH-ID: 3.40.50.20 Glycinamide ribonucleotide synthetase. Chain: a. Synonym: purd gen pro VNG1480c cluster04 -> 1aj300 7.0179102 98 / 126 conP: 0.365 CATH-ID: 1.20.1040.10 Alpha spectrin. Chain: null. Fragment: 16th repeat, residues 1772 - 18 VNG1480c cluster06 -> 1jud01 11.996729 145 / 126 conP: 0.651 CATH-ID: 3.40.50.1000 L-2-haloacid dehalogenase. Chain: null. Engineered: yes --end-- VNG1486h one-of-top-five-correct: 0.252605429703925 CThresh: 3.423602 75 best_is: cluster16 VNG1486h cluster00 -> 1fnhA1 5.3151537 90 / 52 conP: 0.168 CATH-ID: 2.60.40.30 Fibronectin. Chain: a. Fragment: heparin and integrin binding. Enginee VNG1486h cluster01 -> 1alkA0 3.9334261 449 / 52 conP: 0.001 CATH-ID: 3.40.720.10 Alkaline phosphatase VNG1486h cluster02 -> 1b4bA0 5.7757296 71 / 52 conP: 0.229 CATH-ID: 3.30.70.220 Arginine repressor. Chain: a, b, c. Fragment: oligomerization domain, VNG1486h cluster03 -> 1c7sA4 4.9129303 66 / 52 conP: 0.198 CATH-ID: 2.60.40.320 Beta-n-acetylhexosaminidase. Chain: a. Fragment: mature protein, perip VNG1486h cluster04 -> 1b12A1 5.1820575 130 / 52 conP: 0.102 CATH-ID: 2.10.109.10 Signal peptidase i. Chain: a, b, c, d. Fragment: catalytic domain. Syn VNG1486h cluster16 -> 1tif00 6.6968813 76 / 52 conP: 0.266 CATH-ID: 3.10.20.80 Translation initiation factor 3. Chain: null. Domain: n-terminal resid --end-- VNG14880 one-of-top-five-correct: 0.341751457625172 CThresh: 6.489499 75 best_is: cluster13 VNG14880 cluster00 -> 1hsbB0 8.5119990 99 / 80 conP: 0.302 CATH-ID: 2.60.40.10 Class i histocompatibility antigen aw68.1 (leucocyte antigen) VNG14880 cluster01 -> 1f0xA1 6.3996404 100 / 80 conP: 0.189 CATH-ID: 3.30.70.610 D-lactate dehydrogenase. Chain: a, b. Synonym: dldh. Engineered: yes VNG14880 cluster02 -> 1hdmA2 7.5093608 112 / 80 conP: 0.224 CATH-ID: 2.60.40.10 Class ii histocompatibility antigen, m alpha chain. Chain: a. Fragment VNG14880 cluster03 -> 1ha101 6.6019338 85 / 80 conP: 0.220 CATH-ID: 3.30.70.330 Hnrnp a1. Chain: null. Fragment: hnrnp a1 (rbd1, rbd2). Synonym: heter VNG14880 cluster04 -> 1jjcA0 6.6019338 266 / 80 conP: 0.055 CATH-ID: 3.40.690.10 Phenylalanyl-tRNA synthetase alpha chain. Chain: a. Fragment: alpha ch VNG14880 cluster13 -> 1cvjA2 8.6248678 92 / 80 conP: 0.322 CATH-ID: 3.30.70.330 Polydenylate binding protein 1. Chain: a, b, c, d, e, f, g, h. Fragmen --end-- VNG14881 one-of-top-five-correct: 0.484486102272414 CThresh: 6.171644 75 best_is: cluster02 VNG14881 cluster00 -> 1an4A0 5.0297661 65 / 120 conP: 0.267 CATH-ID: 4.10.280.10 Usf. Chain: a, b. Fragment: b/hlh DNA binding domain. Synonym: upstrea VNG14881 cluster01 -> 1fmtA1 6.5785565 202 / 120 conP: 0.204 CATH-ID: 3.40.50.170 Methionyl-tRNA fmet formyltransferase. Chain: a, b. Synonym: 10-formyl VNG14881 cluster02 -> 1d9eA0 9.1944343 266 / 120 conP: 0.272 CATH-ID: 3.20.20.280 3-deoxy-d-manno-octulosonate 8-phosphate synthase. Chain: a, b, c, d. VNG14881 cluster03 -> 1d3gA0 7.1088777 360 / 120 conP: 0.106 CATH-ID: 3.20.20.90 Dihydroorotate dehydrogenase. Chain: a. Engineered: yes VNG14881 cluster04 -> 1b0pA6 5.9163080 385 / 120 conP: 0.068 CATH-ID: 3.40.50.970 Pyruvate-ferredoxin oxidoreductase. Chain: a, b. Biological_unit: homo --end-- VNG1490h one-of-top-five-correct: 0.368065305013568 CThresh: 8.125699 25 best_is: cluster16 VNG1490h cluster00 -> 1ytfD1 5.5001509 53 / 133 conP: 0.245 CATH-ID: 1.20.15.160 Yeast tata-box binding protein. Chain: a. Fragment: c-terminal 180 ami VNG1490h cluster01 -> 1ku3A 6.3230815 61 / 133 conP: 0.282 NO-CATH VNG1490h cluster02 -> 1furA3 6.2363054 52 / 133 conP: 0.287 CATH-ID: 1.10.40.30 FumarasE C. Chain: a, b. Synonym: fumc. Engineered: yes. Mutation: h18 VNG1490h cluster03 -> 153l00 5.6462326 185 / 133 conP: 0.144 CATH-ID: 1.10.530.10 Lysozyme VNG1490h cluster04 -> 1qo0D2 6.0814600 46 / 133 conP: 0.284 CATH-ID: 1.10.15.10 Amic. Chain: a, b. Fragment: amide receptor. Engineered: yes. Other_de VNG1490h cluster16 -> 2a3dA0 8.4748166 73 / 133 conP: 0.407 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes --end-- VNG15014 one-of-top-five-correct: 0.317742301696644 CThresh: 4.099286 75 best_is: cluster03 VNG15014 cluster00 -> 1b5dA0 5.2809413 246 / 64 conP: 0.041 CATH-ID: 3.30.572.10 Deoxycytidylate hydroxymethylase. Chain: a, b. Synonym: deoxycytidylat VNG15014 cluster01 -> 1fc5A 5.7214313 397 / 64 conP: 0.009 NO-CATH VNG15014 cluster02 -> 1g8tB0 6.1465287 241 / 64 conP: 0.054 CATH-ID: 3.40.570.10 Nuclease sm2 isoform. Chain: a, b. Engineered: yes. Other_details: mg VNG15014 cluster03 -> 1avaA1 7.6077225 345 / 64 conP: 0.027 CATH-ID: 3.20.20.80 Barley alpha-amylase 2(cv menuet). Chain: a, b. Synonym: amy2. Enginee VNG15014 cluster04 -> 1di2A0 6.5835505 69 / 64 conP: 0.299 CATH-ID: 3.30.160.20 Double stranded RNA binding protein a. Chain: a, b. Fragment: second d --end-- VNG15050 one-of-top-five-correct: 0.539138226007415 CThresh: 6.135246 75 best_is: cluster00 VNG15050 cluster00 -> 1ljwA 9.4585292 141 / 134 conP: 0.503 NO-CATH VNG15050 cluster01 -> 1ytfD1 6.6450636 53 / 134 conP: 0.416 CATH-ID: 1.20.15.160 Yeast tata-box binding protein. Chain: a. Fragment: c-terminal 180 ami VNG15050 cluster02 -> 1kdxA0 6.7697739 81 / 134 conP: 0.389 CATH-ID: 1.10.246.20 Cbp. Chain: a. Fragment: kix, residues 586-666. Synonym: creb-binding VNG15050 cluster03 -> 1ad3A1 7.0333359 247 / 134 conP: 0.224 CATH-ID: 3.40.605.10 Aldehyde dehydrogenase (class 3). Chain: a, b. Synonym: aldh. Engineer VNG15050 cluster04 -> 1c9bA2 7.6476250 106 / 134 conP: 0.419 CATH-ID: 1.10.472.10 General transcription factor iib. Chain: a, e, i, m, q. Fragment: c-te --end-- VNG15100 one-of-top-five-correct: 0.660162562422249 CThresh: 2.981764 100 best_is: cluster12 VNG15100 cluster00 -> 1bwoA0 7.5404154 90 / 73 conP: 0.409 CATH-ID: 1.10.110.10 Nonspecific lipid-transfer protein. Chain: a, b. Synonym: ns-ltp1 VNG15100 cluster01 -> 1fjgT0 6.6461605 99 / 73 conP: 0.329 CATH-TRUNC VNG15100 cluster02 -> 1om2A0 8.1887157 95 / 73 conP: 0.443 CATH-ID: 1.20.960.10 Mitochondrial import receptor subunit tom20. Chain: a. Fragment: resid VNG15100 cluster03 -> 1efyA1 6.7468132 136 / 73 conP: 0.261 CATH-ID: 1.20.142.10 Poly (adp-ribose) polymerase. Chain: a. Fragment: catalytic fragment. VNG15100 cluster04 -> 1he8A3 10.181792 111 / 73 conP: 0.547 CATH-ID: 1.25.40.70 Phosphatidylinositol 3-kinase catalytic subunit, gamma isoform. Synony VNG15100 cluster12 -> 1dceA1 10.805727 317 / 73 conP: 0.167 CATH-ID: 1.25.40.120 Rab geranylgeranyltransferase alpha subunit. Chain: a, c. Rab geranylg --end-- VNG15102 one-of-top-five-correct: 0.309026689091891 CThresh: 3.414843 75 best_is: cluster15 VNG15102 cluster00 -> 1mxa03 6.8977153 106 / 57 conP: 0.231 CATH-ID: 3.30.300.10 S-adenosylmethionine synthetase. Chain: null. Synonym: mat, atp\:l-met VNG15102 cluster01 -> 1ha101 6.7576033 85 / 57 conP: 0.272 CATH-ID: 3.30.70.330 Hnrnp a1. Chain: null. Fragment: hnrnp a1 (rbd1, rbd2). Synonym: heter VNG15102 cluster02 -> 1euvB0 6.2255530 79 / 57 conP: 0.257 CATH-ID: 3.10.20.40 Ulp1 protease. Chain: a. Fragment: c-terminal protease domain. Enginee VNG15102 cluster03 -> 1jjcA0 6.0014989 266 / 57 conP: 0.032 CATH-ID: 3.40.690.10 Phenylalanyl-tRNA synthetase alpha chain. Chain: a. Fragment: alpha ch VNG15102 cluster04 -> 1ris00 6.8977153 97 / 57 conP: 0.252 CATH-ID: 3.30.70.60 Ribosomal protein s6 VNG15102 cluster15 -> 1eomA0 7.3458234 283 / 57 conP: 0.037 CATH-ID: 3.20.20.80 Endo-beta-n-acetylglucosaminidase f3. Chain: a. Engineered: yes --end-- VNG15103 one-of-top-five-correct: 0.358798736739224 CThresh: 6.997005 50 best_is: cluster18 VNG15103 cluster00 -> 2scuB1 5.0526797 155 / 113 conP: 0.140 CATH-ID: 3.30.470.20 Succinyl-coa ligase. Chain: a, d. Synonym: scs. Engineered: yes. Biolo VNG15103 cluster01 -> 1augA0 4.9337288 210 / 113 conP: 0.100 CATH-ID: 3.40.630.20 Pyroglutamyl peptidase-1. Chain: a, b, c, d. Synonym: pgp-1, pyrrolido VNG15103 cluster02 -> 1fruA1 4.5232729 177 / 113 conP: 0.108 CATH-ID: 3.30.500.10 Fc (igg) receptor (neonatal) (orthorhombic crystal form) (fcrn) (extra VNG15103 cluster03 -> 1dik06 5.6865579 98 / 113 conP: 0.217 CATH-ID: 3.30.470.20 Pyruvate phosphate dikinase. Chain: null. Synonym: ppdk. Engineered: y VNG15103 cluster04 -> 1fgxA0 7.3156185 272 / 113 conP: 0.131 CATH-ID: 3.90.550.20 Beta 1,4 galactosyltransferase. Chain: a, b. Fragment: catalytic domai VNG15103 cluster18 -> 1bxgB1 8.3086940 131 / 113 conP: 0.325 CATH-ID: 3.40.192.10 Phenylalanine dehydrogenase. Chain: a, b. Engineered: yes. Biological_ --end-- VNG15110 one-of-top-five-correct: 0.306560999940521 CThresh: 6.997737 54 best_is: cluster14 VNG15110 cluster00 -> 1epaA0 5.2490972 160 / 115 conP: 0.146 CATH-ID: 2.40.128.20 Epididymal retinoic acid-binding protein (androgen dependent secretory VNG15110 cluster01 -> 1ei5A3 5.1885844 102 / 115 conP: 0.194 CATH-ID: 2.40.128.50 D-aminopeptidase. Chain: a. Synonym: dap. Engineered: yes VNG15110 cluster02 -> 1znbA0 5.8453150 228 / 115 conP: 0.119 CATH-ID: 3.60.15.10 Metallo-beta-lactamase. Chain: a, b. Synonym: class b beta-lactamase. VNG15110 cluster03 -> 1epaA0 5.4066358 160 / 115 conP: 0.152 CATH-ID: 2.40.128.20 Epididymal retinoic acid-binding protein (androgen dependent secretory VNG15110 cluster04 -> 1ep2A0 6.5736648 305 / 115 conP: 0.094 CATH-ID: 3.20.20.90 Dihydroorotate dehydrogenase b (pyrd subunit). Chain: a. Engineered: y VNG15110 cluster14 -> 1ei5A3 7.6183384 102 / 115 conP: 0.326 CATH-ID: 2.40.128.50 D-aminopeptidase. Chain: a. Synonym: dap. Engineered: yes --end-- VNG15111 one-of-top-five-correct: 0.141892265583093 CThresh: 6.987730 65 best_is: cluster12 VNG15111 cluster00 -> 1pjr04 5.3544058 140 / 68 conP: 0.075 CATH-ID: 1.10.486.10 Pcra. Chain: null. Engineered: yes VNG15111 cluster01 -> 1tca00 4.0795187 317 / 68 conP: 0.009 CATH-ID: 3.40.50.950 Lipase (triacylglycerol hydrolase) VNG15111 cluster02 -> 1azsC2 5.6695995 115 / 68 conP: 0.103 CATH-ID: 1.10.400.10 Vc1. Chain: a. Fragment: c1a domain of adenylyl cyclase. Engineered: y VNG15111 cluster03 -> 1lmb30 4.9294435 87 / 68 conP: 0.110 CATH-ID: 1.10.260.10 Lambda repressor/operator complex VNG15111 cluster04 -> 1iibA0 4.2026702 103 / 68 conP: 0.078 CATH-ID: 3.40.50.270 Enzyme iib of the cellobiose-specific phosphotransferase system. Chain VNG15111 cluster12 -> 1qgvA0 5.9918494 130 / 68 conP: 0.097 CATH-ID: 3.40.30.10 Spliceosomal protein u5-15kd. Chain: a. Fragment: full-length. Enginee --end-- VNG15112 one-of-top-five-correct: 0.30162363897863 CThresh: 6.951581 75 best_is: cluster19 VNG15112 cluster00 -> 1e2tA2 5.1665130 115 / 110 conP: 0.172 CATH-ID: 2.40.128.40 N-hydroxyarylamine o-acetyltransferase. Chain: a, b, c, d, e, f, g, h. VNG15112 cluster01 -> 1a9xA2 5.3769028 217 / 110 conP: 0.104 CATH-ID: 3.30.470.20 Carbamoyl phosphate synthetase. Chain: a, b, c, d, e, f, g, h. Enginee VNG15112 cluster02 -> 1p32A0 6.4438702 182 / 110 conP: 0.164 CATH-ID: 3.10.280.10 Mitochondrial matrix protein, sf2p32. Chain: a, b, c. Mutation: l74m VNG15112 cluster03 -> 1bebA0 4.9259429 156 / 110 conP: 0.130 CATH-ID: 2.40.128.20 Beta-lactoglobulin. Chain: a, b. Biological_unit: predominantly dimeri VNG15112 cluster04 -> 1l0wA 5.7768953 580 / 110 conP: 0.013 NO-CATH VNG15112 cluster19 -> 1bovA0 7.6473864 69 / 110 conP: 0.363 CATH-ID: 2.40.50.70 Verotoxin-1 (b-oligomer, also called shiga-like toxin-1) --end-- VNG1513h one-of-top-five-correct: 0.244948643544053 CThresh: 4.994425 75 best_is: cluster11 VNG1513h cluster00 -> 1ltm_ 5.3895366 309 / 77 conP: 0.033 NO-CATH VNG1513h cluster01 -> 1jmcA2 4.9229114 124 / 77 conP: 0.140 CATH-ID: 2.40.50.10 Replication protein a. Chain: a. Fragment: 70kda DNA-binding subunit, VNG1513h cluster02 -> 1tca00 5.2738367 317 / 77 conP: 0.030 CATH-ID: 3.40.50.950 Lipase (triacylglycerol hydrolase) VNG1513h cluster03 -> 1e0bA0 6.3648104 61 / 77 conP: 0.304 CATH-ID: 2.40.50.40 Swi6 protein. Chain: a, b. Fragment: chromo shadow domain. Engineered: VNG1513h cluster04 -> 1hfh01 5.0280496 62 / 77 conP: 0.228 CATH-ID: 2.10.70.10 Factor h, 15th and 16th c-module pair (nmr, minimized averaged structu VNG1513h cluster11 -> 1qu6A2 6.7278408 76 / 77 conP: 0.297 CATH-ID: 3.30.160.20 Protein kinase pkr. Chain: a. Fragment: dsrna-binding n-terminal domai --end-- VNG1519h one-of-top-five-correct: 0.402171250940646 CThresh: 3.671048 75 best_is: cluster18 VNG1519h cluster00 -> 1dv0A0 6.6181316 45 / 68 conP: 0.395 CATH-ID: 1.10.8.10 DNA repair protein hhr23a. Chain: a. Fragment: uba domain (c-terminal VNG1519h cluster01 -> 1fts01 7.0542554 84 / 68 conP: 0.331 CATH-ID: 1.20.120.140 Ftsy. Chain: null. Fragment: ng-domain residues 197 - 497. Engineered: VNG1519h cluster02 -> 1jetA3 7.0038279 216 / 68 conP: 0.112 CATH-ID: 3.10.105.10 Oligo-peptide binding protein. Chain: a. Synonym: oppa. Peptide lys al VNG1519h cluster03 -> 1i86A 7.2667366 388 / 68 conP: 0.023 NO-CATH VNG1519h cluster04 -> 1fteA 7.0542554 116 / 68 conP: 0.263 NO-CATH VNG1519h cluster18 -> 4crxA2 8.3291426 111 / 68 conP: 0.352 CATH-ID: 1.10.150.130 Cre recombinase. Chain: a, b. Engineered: yes. Mutation: r173k. Biolog --end-- VNG15201 one-of-top-five-correct: 0.366947338801888 CThresh: 2.695817 100 best_is: cluster13 VNG15201 cluster00 -> 1trkA1 6.2043306 329 / 68 conP: 0.037 CATH-ID: 3.40.50.970 Transketolase VNG15201 cluster01 -> 1e3wA0 6.2043306 251 / 68 conP: 0.080 CATH-ID: 3.40.50.720 Short chain 3-hydroxyacyl-coa dehydrogenase. Chain: a, b, c, d. Synony VNG15201 cluster02 -> 1qqnA4 5.2503097 84 / 68 conP: 0.269 CATH-ID: 3.90.640.10 D206s mutant of bovine 70 kilodalton heat shock protein. Chain: a. Fra VNG15201 cluster03 -> 1dxxA1 7.0542554 113 / 68 conP: 0.314 CATH-ID: 1.10.418.10 Dystrophin. Chain: a, b, c, d. Fragment: actin-binding. Engineered: ye VNG15201 cluster04 -> 1a0b00 4.9499815 117 / 68 conP: 0.193 CATH-ID: 1.20.120.160 Aerobic respiration control sensor protein arcb. Chain: null. Fragment VNG15201 cluster13 -> 1dtwA0 7.4792178 382 / 68 conP: 0.031 CATH-ID: 3.40.50.970 Branched-chain alpha-keto acid dehydrogenase alpha subunit. Chain: a. --end-- VNG15250 one-of-top-five-correct: 0.214078769925376 CThresh: 7.526633 25 best_is: cluster05 VNG15250 cluster00 -> 1a6s00 4.8882685 87 / 100 conP: 0.151 CATH-ID: 1.10.150.90 Gag polyprotein. Chain: null. Fragment: m-domain. Engineered: yes. Mut VNG15250 cluster01 -> 1mhdA0 6.1279075 123 / 100 conP: 0.165 CATH-ID: 3.90.520.10 Smad3. Chain: a, b. Fragment: mh1 domain, residues 1 - 144. Synonym: s VNG15250 cluster02 -> 1ngr00 5.8046598 85 / 100 conP: 0.191 CATH-ID: 1.10.533.10 P75 low affinity neurotrophin receptor. Chain: null. Fragment: death d VNG15250 cluster03 -> 1c3qA0 6.4105784 272 / 100 conP: 0.070 CATH-ID: 3.90.77.20 His tag. Chain: x, y, z. Synonym: thz kinase. Engineered: yes. Hydroxy VNG15250 cluster04 -> 1hy1A3 6.4688254 72 / 100 conP: 0.238 CATH-ID: 1.10.40.30 Delta crystallin ii. Chain: a, b, c, d. Synonym: delta-2-crystallin, a VNG15250 cluster05 -> 1ytfD1 6.8740461 53 / 100 conP: 0.286 CATH-ID: 1.20.15.160 Yeast tata-box binding protein. Chain: a. Fragment: c-terminal 180 ami --end-- VNG1530h one-of-top-five-correct: 0.293770004167033 CThresh: 6.353999 75 best_is: cluster02 VNG1530h cluster00 -> 1b8fA2 6.0952692 313 / 84 conP: 0.038 CATH-ID: 1.20.200.10 Histidine ammonia-lyase. Chain: a. Synonym: hal, histidase. Engineered VNG1530h cluster01 -> 1rmi_ 6.1833221 160 / 84 conP: 0.128 NO-CATH VNG1530h cluster02 -> 1agsA 7.8655688 221 / 84 conP: 0.125 NO-CATH VNG1530h cluster03 -> 1dkxA2 6.4732133 80 / 84 conP: 0.237 CATH-ID: 1.20.120.110 Substrate binding domain of dnak. Chain: a. Biological_unit: dimer. Su VNG1530h cluster04 -> 1b3qA2 6.0716718 174 / 84 conP: 0.112 CATH-ID: 3.30.565.20 Chemotaxis protein chea. Chain: a, b. Fragment: dimerization domain, k --end-- VNG15321 one-of-top-five-correct: 0.201947175301389 CThresh: 5.393127 75 best_is: cluster19 VNG15321 cluster00 -> 1jmcA2 4.9622380 124 / 67 conP: 0.106 CATH-ID: 2.40.50.10 Replication protein a. Chain: a. Fragment: 70kda DNA-binding subunit, VNG15321 cluster01 -> 1pkm03 4.3219412 103 / 67 conP: 0.109 CATH-ID: 2.40.33.10 M1 pyruvate kinase. Chain: null. Synonym: pk. Ec: 2.7.1.40 VNG15321 cluster02 -> 1hw7A 6.4562639 229 / 67 conP: 0.057 NO-CATH VNG15321 cluster03 -> 1c8zA0 5.2868738 265 / 67 conP: 0.029 CATH-ID: 3.20.90.10 Tubby protein. Chain: a. Engineered: yes VNG15321 cluster04 -> 1jeyA 6.2428316 493 / 67 conP: 0.004 NO-CATH VNG15321 cluster19 -> 1gdoA0 6.4562639 238 / 67 conP: 0.053 CATH-ID: 3.60.20.10 Glucosamine 6-phosphate synthase. Chain: a, b, c, d. Fragment: glutami --end-- VNG1534h one-of-top-five-correct: 0.272540837192708 CThresh: 2.723556 100 best_is: cluster00 VNG1534h cluster00 -> 1in4A 6.7979811 298 / 46 conP: 0.012 NO-CATH VNG1534h cluster01 -> 1bu2A1 5.3649389 112 / 46 conP: 0.123 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG1534h cluster02 -> 1dik05 4.6484178 89 / 46 conP: 0.139 CATH-ID: 1.20.80.30 Pyruvate phosphate dikinase. Chain: null. Synonym: ppdk. Engineered: y VNG1534h cluster03 -> 1fteA 5.6037793 116 / 46 conP: 0.124 NO-CATH VNG1534h cluster04 -> 1c3uA3 6.0814600 82 / 46 conP: 0.214 CATH-ID: 1.10.164.30 Adenylosuccinate lyase. Chain: a, b. Engineered: yes --end-- VNG15370 one-of-top-five-correct: 0.39039555084529 CThresh: 5.967529 75 best_is: cluster05 VNG15370 cluster00 -> 1abz00 5.3143675 38 / 114 conP: 0.315 CATH-ID: 1.20.860.10 Alpha-t-alpha. Chain: null. Synonym: ata. Engineered: yes. Other_detai VNG15370 cluster01 -> 1akhB0 8.0979451 78 / 114 conP: 0.445 CATH-ID: 1.10.10.60 Mating-type protein a-1. Chain: a. Engineered: yes. Mating-type protei VNG15370 cluster02 -> 1gab00 6.0451230 53 / 114 conP: 0.341 CATH-ID: 1.10.8.40 Protein pab. Chain: null. Fragment: albumin-binding domain, residues 2 VNG15370 cluster03 -> 1mpgA3 6.9271692 52 / 114 conP: 0.402 CATH-ID: 1.10.15.10 3-methyladenine DNA glycosylase ii. Chain: a, b. Synonym: alka. Engine VNG15370 cluster04 -> 1a81A2 5.8969285 45 / 114 conP: 0.342 CATH-ID: 1.10.930.10 Syk kinase. Chain: a, c, e, g, i, k. Fragment: tandem sh2 domain. Engi VNG15370 cluster05 -> 1bob03 8.1884300 54 / 114 conP: 0.488 CATH-ID: 1.10.900.10 Histone acetyltransferase. Chain: null. Synonym: hat1. Engineered: yes --end-- VNG15431 one-of-top-five-correct: 0.207406650491769 CThresh: 6.471907 75 best_is: cluster15 VNG15431 cluster00 -> 1hf2A 4.9903646 196 / 60 conP: 0.032 NO-CATH VNG15431 cluster01 -> 1ignA2 4.7689442 95 / 60 conP: 0.092 CATH-ID: 1.10.10.60 Rap1. Chain: a, b. Fragment: DNA binding domain 353 - 598. Synonym: gr VNG15431 cluster02 -> 1fehA5 4.9903646 211 / 60 conP: 0.027 CATH-ID: 3.40.950.10 Periplasmic hydrogenase 1. Chain: a. Ec: 1.18.99.1 VNG15431 cluster03 -> 1vdeA3 5.8729035 109 / 60 conP: 0.106 CATH-ID: 3.10.28.10 Pi-scei. Chain: a, b. Engineered: yes VNG15431 cluster04 -> 1gkjA 4.9903646 509 / 60 conP: 0.001 NO-CATH --end-- VNG15540 one-of-top-five-correct: 0.334713517691134 CThresh: 3.692263 75 best_is: cluster13 VNG15540 cluster00 -> 1dnpA3 7.1217693 181 / 57 conP: 0.107 CATH-ID: 1.10.579.10 DNA photolyase. Chain: a, b. Synonym: DNA cyclobutane dipyrimidine pho VNG15540 cluster01 -> 1dnpA3 7.5698775 181 / 57 conP: 0.120 CATH-ID: 1.10.579.10 DNA photolyase. Chain: a, b. Synonym: DNA cyclobutane dipyrimidine pho VNG15540 cluster02 -> 1akhB0 6.7576033 78 / 57 conP: 0.277 CATH-ID: 1.10.10.60 Mating-type protein a-1. Chain: a. Engineered: yes. Mating-type protei VNG15540 cluster03 -> 1dnpA3 6.0014989 181 / 57 conP: 0.080 CATH-ID: 1.10.579.10 DNA photolyase. Chain: a, b. Synonym: DNA cyclobutane dipyrimidine pho VNG15540 cluster04 -> 1jjuA 7.5698775 489 / 57 conP: 0.003 CATH-TRUNC VNG15540 cluster13 -> 1bwoA0 7.7939316 90 / 57 conP: 0.308 CATH-ID: 1.10.110.10 Nonspecific lipid-transfer protein. Chain: a, b. Synonym: ns-ltp1 --end-- VNG15570 one-of-top-five-correct: 0.153263772413649 CThresh: 6.873116 75 best_is: cluster23 VNG15570 cluster00 -> 1dcqA0 5.1362508 276 / 62 conP: 0.014 CATH-ID: 1.25.40.50 Pyk2-associated protein beta. Chain: a. Fragment: arf-gap domain. Engi VNG15570 cluster01 -> 1fwrA0 4.9079506 213 / 62 conP: 0.026 CATH-ID: 3.20.20.90 Kdpg aldolase. Chain: a, b, c. Engineered: yes. Mutation: yes VNG15570 cluster02 -> 1aipC3 4.8132034 53 / 62 conP: 0.136 CATH-ID: 1.10.8.30 Elongation factor tu. Chain: a, b, e, f. Synonym: ef-tu. Engineered: y VNG15570 cluster03 -> 1gytC 3.8254150 503 / 62 conP: 0.001 CATH-TRUNC VNG15570 cluster04 -> 1d2fA1 5.3547235 118 / 62 conP: 0.081 CATH-ID: 3.30.70.160 Maly protein. Chain: a, b. Engineered: yes VNG15570 cluster23 -> 1qbhA0 6.3240585 101 / 62 conP: 0.124 CATH-ID: 1.10.1170.10 Inhibitor of apoptosis protein (2mihb/c-iap-1). Chain: a. Engineered: --end-- VNG1558h one-of-top-five-correct: 0.258161023585757 CThresh: 6.641579 75 best_is: cluster11 VNG1558h cluster00 -> 1af500 6.5682409 126 / 81 conP: 0.161 CATH-ID: 3.10.28.10 I-crei. Chain: null. Synonym: DNA endonuclease i-crei. Engineered: yes VNG1558h cluster01 -> 1b3jA1 5.1575096 170 / 81 conP: 0.080 CATH-ID: 3.30.500.10 Mhc class i homolog mic-a. Chain: a. Fragment: extracellular domain, r VNG1558h cluster02 -> 1dhmA0 6.2883315 83 / 81 conP: 0.205 CATH-ID: 3.30.70.330 E2 protein. Chain: a, b. Fragment: DNA-binding domain. Engineered: yes VNG1558h cluster03 -> 1qo6A1 5.0356344 43 / 81 conP: 0.202 CATH-ID: 2.10.70.10 Fibronectin. Chain: a. Fragment: fibronectin type-i and fibronectin ty VNG1558h cluster04 -> 1tml00 6.6785375 286 / 81 conP: 0.047 CATH-ID: 3.20.20.40 Endo-1,4-beta-d-glucanase VNG1558h cluster11 -> 1cnt10 7.5759061 150 / 81 conP: 0.173 CATH-ID: 1.20.120.200 Ciliary neurotrophic factor. Chain: 1, 2, 3, 4. Synonym: cntf. Enginee --end-- VNG15610 one-of-top-five-correct: 0.379865339648122 CThresh: 5.973353 75 best_is: cluster19 VNG15610 cluster00 -> 1ffyA3 6.8072405 254 / 101 conP: 0.123 CATH-ID: 1.10.730.10 Isoleucyl-tRNA synthetase. Chain: a. Synonym: isoleucine--tRNA ligase, VNG15610 cluster01 -> 1c7nA1 5.2251982 164 / 101 conP: 0.142 CATH-ID: 3.30.70.160 Cystalysin. Chain: a, b, c, d, e, f, g, h. Engineered: yes VNG15610 cluster02 -> 1hw5A2 5.7776066 68 / 101 conP: 0.275 CATH-ID: 1.10.10.10 Catabolite gene activator. Chain: a, b. Synonym: camp receptor protein VNG15610 cluster03 -> 1ej5A0 6.6833033 107 / 101 conP: 0.273 CATH-ID: 1.10.850.10 Wiskott-aldrich syndrome protein. Chain: a. Synonym: wasp. Engineered: VNG15610 cluster04 -> 1g8jA 5.6133258 820 / 101 conP: 0.002 NO-CATH VNG15610 cluster19 -> 1gxpA 8.3653471 103 / 101 conP: 0.385 NO-CATH --end-- VNG1562h one-of-top-five-correct: 0.433657950315369 CThresh: 7.599646 25 best_is: cluster06 VNG1562h cluster00 -> 1b3qA1 6.3240585 62 / 122 conP: 0.284 CATH-ID: 1.20.15.220 Chemotaxis protein chea. Chain: a, b. Fragment: dimerization domain, k VNG1562h cluster01 -> 1ez0A2 5.8265828 185 / 122 conP: 0.145 CATH-ID: 3.40.309.10 Aldehyde dehydrogenase. Chain: a, b, c, d. Synonym: aldh. Engineered: VNG1562h cluster02 -> 1ytbA2 5.7038800 86 / 122 conP: 0.224 CATH-ID: 3.30.310.10 Tata-box binding protein (ytbp) complexed with DNA containing tata-box VNG1562h cluster03 -> 1jud01 5.0685908 145 / 122 conP: 0.147 CATH-ID: 3.40.50.1000 L-2-haloacid dehalogenase. Chain: null. Engineered: yes VNG1562h cluster04 -> 1bucA3 5.2516318 141 / 122 conP: 0.156 CATH-ID: 1.20.140.10 Butyryl-coa dehydrogenase (bcad) (bacterial short-chain acyl-coa dehyd VNG1562h cluster06 -> 2ccyA0 9.2356723 127 / 122 conP: 0.388 CATH-ID: 1.20.120.10 Cytochrome c(prime) --end-- VNG15641 one-of-top-five-correct: 0.287037621859097 CThresh: 7.158853 25 best_is: cluster00 VNG15641 cluster00 -> 1igd00 7.5946485 61 / 108 conP: 0.356 CATH-ID: 3.10.20.10 Protein g VNG15641 cluster01 -> 1flgA0 5.0837251 582 / 108 conP: 0.009 CATH-ID: 2.140.10.10 Quinoprotein ethanol dehydrogenase. Chain: a, b VNG15641 cluster02 -> 1b6rA2 6.3761965 223 / 108 conP: 0.120 CATH-ID: 3.30.470.20 N5-carboxyaminoimidazole ribonucleotide synthetase. Chain: a. Synonym: VNG15641 cluster03 -> 2fmr00 4.7149804 65 / 108 conP: 0.190 CATH-ID: 3.30.70.210 Fmr1 protein. Chain: null. Fragment: first kh domain residues 216 - 28 VNG15641 cluster04 -> 1oacA1 6.5119640 80 / 108 conP: 0.264 CATH-ID: 3.30.457.10 Copper amine oxidase. Chain: a, b. Ec: 1.4.3.6 --end-- VNG15651 one-of-top-five-correct: 0.098319206526857 CThresh: 8.908518 25 best_is: cluster03 VNG15651 cluster00 -> 1cfh00 3.5304415 47 / 100 conP: 0.105 CATH-ID: 4.10.750.10 Coagulation factor ix (the gla and aromatic amino acid stack domains f VNG15651 cluster02 -> 1h75A0 3.2138964 76 / 100 conP: 0.080 CATH-ID: 3.40.30.10 Protein nrdh. Chain: a. Engineered: yes VNG15651 cluster03 -> 1d6mA4 4.9944292 127 / 100 conP: 0.092 CATH-ID: 1.10.290.10 DNA topoisomerase iii. Chain: a. Engineered: yes VNG15651 cluster05 -> 1alo01 3.6332851 74 / 100 conP: 0.091 CATH-ID: 3.10.20.30 Aldehyde oxidoreductase. Chain: null. Synonym: molybdenum iron sulfur VNG15651 cluster06 -> 1fj2A0 3.2859450 229 / 100 conP: 0.030 CATH-ID: 3.40.50.950 Acyl protein thioesterase 1. Chain: a, b. Engineered: yes --end-- VNG15662 one-of-top-five-correct: 0.477523956522428 CThresh: 3.711305 75 best_is: cluster19 VNG15662 cluster00 -> 1do0A3 7.2885746 109 / 93 conP: 0.394 CATH-ID: 1.10.8.60 Heat shock locus u. Chain: a, b, c, d, e, f. Engineered: yes VNG15662 cluster01 -> 1fafA0 7.6515070 79 / 93 conP: 0.475 CATH-ID: 1.20.15.80 Large t antigen. Chain: a. Fragment: n-terminal domain. Engineered: ye VNG15662 cluster02 -> 1do0A3 7.9486505 109 / 93 conP: 0.441 CATH-ID: 1.10.8.60 Heat shock locus u. Chain: a, b, c, d, e, f. Engineered: yes VNG15662 cluster03 -> 1geo03 7.3866227 146 / 93 conP: 0.337 CATH-ID: 3.30.413.10 Sulfite reductase hemoprotein. Chain: null. Synonym: sirhp. Engineered VNG15662 cluster04 -> 1do0A3 7.5740508 109 / 93 conP: 0.414 CATH-ID: 1.10.8.60 Heat shock locus u. Chain: a, b, c, d, e, f. Engineered: yes VNG15662 cluster19 -> 1do0A3 8.6170970 109 / 93 conP: 0.489 CATH-ID: 1.10.8.60 Heat shock locus u. Chain: a, b, c, d, e, f. Engineered: yes --end-- VNG15700 one-of-top-five-correct: 0.290711758816032 CThresh: 7.581430 25 best_is: cluster17 VNG15700 cluster00 -> 1azsA0 5.4387997 190 / 117 conP: 0.120 CATH-ID: 3.50.6.10 Vc1. Chain: a. Fragment: c1a domain of adenylyl cyclase. Engineered: y VNG15700 cluster01 -> 1ytfB0 6.5591408 46 / 117 conP: 0.309 CATH-ID: 1.20.15.70 Yeast tata-box binding protein. Chain: a. Fragment: c-terminal 180 ami VNG15700 cluster02 -> 1ytfB0 5.6037793 46 / 117 conP: 0.253 CATH-ID: 1.20.15.70 Yeast tata-box binding protein. Chain: a. Fragment: c-terminal 180 ami VNG15700 cluster03 -> 1kdxA0 5.6753801 81 / 117 conP: 0.219 CATH-ID: 1.10.246.20 Cbp. Chain: a. Fragment: kix, residues 586-666. Synonym: creb-binding VNG15700 cluster04 -> 6ldh01 5.8063690 162 / 117 conP: 0.152 CATH-ID: 3.40.50.720 M=4= apo- Lactate dehydrogenase VNG15700 cluster17 -> 1mnmA 7.6303210 85 / 117 conP: 0.325 NO-CATH --end-- VNG15701 one-of-top-five-correct: 0.286257639105148 CThresh: 6.466482 75 best_is: cluster05 VNG15701 cluster00 -> 1ecl01 5.4722192 139 / 99 conP: 0.155 CATH-ID: 3.40.50.140 Escherichia coli topoisomerase i. Domain: amino-terminal 67kda. Synony VNG15701 cluster01 -> 1be100 6.0835648 137 / 99 conP: 0.182 CATH-ID: 3.40.50.280 Glutamate mutase. Chain: null. Fragment: b12-binding subunit. Synonym: VNG15701 cluster02 -> 1jqcA0 6.0410362 340 / 99 conP: 0.050 CATH-ID: 1.10.620.20 Protein r2 of ribonucleotide reductase. Chain: a, b. Synonym: ribonucl VNG15701 cluster03 -> 1e5dA1 7.1231679 143 / 99 conP: 0.223 CATH-ID: 3.40.50.360 Rubredoxin:oxygen oxidoreductase. Chain: a, b VNG15701 cluster04 -> 1atg01 6.4202475 122 / 99 conP: 0.214 CATH-ID: 3.40.190.10 Periplasmic molybdate-binding protein. Chain: null. Synonym: moda VNG15701 cluster05 -> 1be100 7.4751423 137 / 99 conP: 0.249 CATH-ID: 3.40.50.280 Glutamate mutase. Chain: null. Fragment: b12-binding subunit. Synonym: --end-- VNG15721 one-of-top-five-correct: 0.458161406733698 CThresh: 5.027647 75 best_is: cluster10 VNG15721 cluster00 -> 1eyrA0 5.2356214 220 / 87 conP: 0.090 CATH-ID: 3.90.550.30 Cmp-n-acetylneuraminic acid synthetase. Chain: a, b. Synonym: acylneur VNG15721 cluster01 -> 1gab00 5.8191801 53 / 87 conP: 0.311 CATH-ID: 1.10.8.40 Protein pab. Chain: null. Fragment: albumin-binding domain, residues 2 VNG15721 cluster02 -> 1itf00 5.3907857 165 / 87 conP: 0.139 CATH-ID: 1.20.120.210 Interferon alpha-2a. Chain: null. Engineered: yes. Biological_unit: mo VNG15721 cluster03 -> 1qnf02 6.1796227 123 / 87 conP: 0.222 CATH-ID: 1.25.40.80 Photolyase. Chain: null. Synonym: DNA cyclobutane dipyrimidine photoly VNG15721 cluster04 -> 1ytfB0 5.4474831 46 / 87 conP: 0.300 CATH-ID: 1.20.15.70 Yeast tata-box binding protein. Chain: a. Fragment: c-terminal 180 ami VNG15721 cluster10 -> 1jslA 9.1377617 324 / 87 conP: 0.117 NO-CATH --end-- VNG15731 one-of-top-five-correct: 0.205451975411622 CThresh: 4.596264 75 best_is: cluster14 VNG15731 cluster00 -> 1d0nA5 5.3602307 96 / 51 conP: 0.123 CATH-ID: 3.40.20.10 Horse plasma gelsolin. Chain: a, b VNG15731 cluster01 -> 1aqt01 4.2021050 88 / 51 conP: 0.100 CATH-ID: 2.60.15.10 Atp synthase. Chain: null. Fragment: epsilon chain. Engineered: yes. M VNG15731 cluster02 -> 1qsaA1 5.3602307 363 / 51 conP: 0.004 CATH-ID: 1.25.20.10 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein VNG15731 cluster03 -> 1hg3A0 5.8234810 224 / 51 conP: 0.027 CATH-ID: 3.20.20.90 Triosephosphate isomerase. Chain: a, b, c, d, e, f, g, h. Engineered: VNG15731 cluster04 -> 1spbP0 6.0551062 71 / 51 conP: 0.194 CATH-ID: 3.30.70.80 Subtilisin bpn' prosegment. Chain: p. Synonym: subtilisin bpn' propept VNG15731 cluster14 -> 1tif00 6.5183565 76 / 51 conP: 0.204 CATH-ID: 3.10.20.80 Translation initiation factor 3. Chain: null. Domain: n-terminal resid --end-- VNG15850 one-of-top-five-correct: 0.410888980173239 CThresh: 6.993477 48 best_is: cluster04 VNG15850 cluster00 -> 1aoiD0 6.3307015 99 / 116 conP: 0.256 CATH-ID: 1.10.20.10 Histone h3. Chain: a, e. Engineered: yes. Histone h4. Chain: b, f. Eng VNG15850 cluster01 -> 1e7aA4 6.3208997 86 / 116 conP: 0.271 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG15850 cluster02 -> 2hts00 6.3071640 88 / 116 conP: 0.268 CATH-ID: 1.10.10.10 Heat shock transcription factor (DNA binding domain) VNG15850 cluster03 -> 1e17A0 6.7153704 90 / 116 conP: 0.289 CATH-ID: 1.10.10.10 Afx. Chain: a. Fragment: DNA binding domain. Engineered: yes VNG15850 cluster04 -> 1hyp00 8.8418408 75 / 116 conP: 0.451 CATH-ID: 1.10.110.10 Hydrophobic protein from soybean --end-- VNG15870 one-of-top-five-correct: 0.430819767793721 CThresh: 5.108600 75 best_is: cluster03 VNG15870 cluster00 -> 1tca00 6.0594342 317 / 78 conP: 0.038 CATH-ID: 3.40.50.950 Lipase (triacylglycerol hydrolase) VNG15870 cluster01 -> 1ej5A0 7.6902430 107 / 78 conP: 0.295 CATH-ID: 1.10.850.10 Wiskott-aldrich syndrome protein. Chain: a. Synonym: wasp. Engineered: VNG15870 cluster02 -> 1cb5A 6.4671364 453 / 78 conP: 0.013 NO-CATH VNG15870 cluster03 -> 1c9bA2 9.0761941 106 / 78 conP: 0.387 CATH-ID: 1.10.472.10 General transcription factor iib. Chain: a, e, i, m, q. Fragment: c-te VNG15870 cluster04 -> 1ebfA2 5.8555831 175 / 78 conP: 0.118 CATH-ID: 3.90.750.10 Homoserine dehydrogenase. Chain: a, b. Engineered: yes --end-- VNG1589c one-of-top-five-correct: 0.22326464478181 CThresh: 9.652619 25 best_is: cluster12 VNG1589c cluster00 -> 2lbp01 5.1273801 201 / 136 conP: 0.090 CATH-ID: 3.40.50.3700 Leucine-binding protein ( LBP ) VNG1589c cluster01 -> 1bk6A0 4.2382733 422 / 136 conP: 0.024 CATH-ID: 1.25.30.10 Karyopherin alpha. Chain: a, b. Fragment: armadillo domain. Synonym: i VNG1589c cluster02 -> 1ctf00 5.3418721 68 / 136 conP: 0.172 CATH-ID: 3.30.70.70 L7(slash) L12 50 s ribosomal protein (c-terminal domain) VNG1589c cluster03 -> 1rdr03 3.8218762 81 / 136 conP: 0.112 CATH-ID: 1.20.960.20 Poliovirus 3d polymerase. Chain: null. Engineered: yes VNG1589c cluster04 -> 1aa7A2 4.8266224 78 / 136 conP: 0.146 CATH-ID: 1.10.10.180 Influenza virus matrix protein. Chain: a, b. Biological_unit: dimer VNG1589c cluster12 -> 1a6s00 7.1656691 87 / 136 conP: 0.242 CATH-ID: 1.10.150.90 Gag polyprotein. Chain: null. Fragment: m-domain. Engineered: yes. Mut --end-- VNG1590h one-of-top-five-correct: 0.215890537362769 CThresh: 6.996315 66 best_is: cluster07 VNG1590h cluster00 -> 1eg9A1 6.7396494 318 / 88 conP: 0.044 CATH-ID: 3.90.380.10 Naphthalene 1,2-dioxygenase alpha subunit. Chain: a. Engineered: yes. VNG1590h cluster01 -> 1bk6A0 6.8474450 422 / 88 conP: 0.020 CATH-ID: 1.25.30.10 Karyopherin alpha. Chain: a, b. Fragment: armadillo domain. Synonym: i VNG1590h cluster02 -> 1inp01 5.7897824 47 / 88 conP: 0.233 CATH-ID: 4.10.460.10 Inositol polyphosphate 1-phosphatase (1-ptase) (inositol-1,4-bisphosph VNG1590h cluster03 -> 1be3C0 5.7096999 378 / 88 conP: 0.021 CATH-ID: 1.20.810.10 Cytochrome bc1 complex. Chain: a, b, c, d, e, f, g, h, i, j, k. Synony VNG1590h cluster04 -> 1rypH0 5.6776355 205 / 88 conP: 0.077 CATH-ID: 3.60.20.10 20s proteasome. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, VNG1590h cluster07 -> 1eq6A0 6.9361750 189 / 88 conP: 0.120 CATH-ID: 3.40.1000.10 Mog1p. Chain: a. Fragment: residues 30-218. Engineered: yes --end-- VNG1591h one-of-top-five-correct: 0.217750969066529 CThresh: 3.857972 75 best_is: cluster10 VNG1591h cluster00 -> 1qqnA4 6.0463047 84 / 56 conP: 0.214 CATH-ID: 3.90.640.10 D206s mutant of bovine 70 kilodalton heat shock protein. Chain: a. Fra VNG1591h cluster01 -> 1dh0A1 4.6948373 270 / 56 conP: 0.018 CATH-ID: 3.90.77.20 Adenosine kinase. Chain: a. Engineered: yes VNG1591h cluster02 -> 4kbpA2 5.4693737 310 / 56 conP: 0.013 CATH-ID: 3.60.21.10 Purple acid phosphatase. Chain: a, b, c, d. Other_details: 111kda dime VNG1591h cluster03 -> 1cfb01 5.3420842 99 / 56 conP: 0.156 CATH-ID: 2.60.40.30 Drosophila neuroglian (chymotryptic fragment containing the two amino VNG1591h cluster04 -> 1kvdB0 5.1453265 77 / 56 conP: 0.186 CATH-ID: 3.30.44.10 Smk toxin. Chain: a, b, c, d. Fragment: chain a and c are residues 19 VNG1591h cluster10 -> 1qniA1 6.2715493 451 / 56 conP: 0.003 CATH-ID: 2.130.10.20 Nitrous-oxide reductase. Chain: a, b, c, d, e, f --end-- VNG15920 one-of-top-five-correct: 0.590201494169208 CThresh: 6.989563 56 best_is: cluster10 VNG15920 cluster00 -> 1hrkA 7.3280486 359 / 107 conP: 0.070 CATH-TRUNC VNG15920 cluster01 -> 1ew6A0 8.4376827 137 / 107 conP: 0.306 CATH-ID: 1.10.490.10 Dehaloperoxidase. Chain: a, b VNG15920 cluster02 -> 1nkl00 7.0786897 78 / 107 conP: 0.305 CATH-ID: 1.10.225.10 Nk-lysin. Chain: null. Other_details: active by membrane-binding VNG15920 cluster03 -> 1uaaA2 6.8162340 74 / 107 conP: 0.294 CATH-ID: 1.10.10.160 Atp-dependent DNA helicase rep. Chain: a, b. Engineered: yes. DNA (5'- VNG15920 cluster04 -> 1a0p01 6.3118180 91 / 107 conP: 0.244 CATH-ID: 1.10.150.130 Site-specific recombinase xerd. Chain: null. Engineered: yes VNG15920 cluster10 -> 1dn1B0 11.029978 222 / 107 conP: 0.348 CATH-ID: 1.20.1050.30 Syntaxin binding protein 1. Chain: a. Synonym: nsec1. Engineered: yes. --end-- VNG15921 one-of-top-five-correct: 0.402007947820964 CThresh: 2.550691 100 best_is: cluster10 VNG15921 cluster00 -> 1cuk03 6.4458751 48 / 72 conP: 0.451 CATH-ID: 1.10.8.10 Ruva protein. Chain: null. Engineered: yes VNG15921 cluster01 -> 1wer02 5.7493496 148 / 72 conP: 0.202 CATH-ID: 1.10.494.10 P120gap. Chain: null. Fragment: catalytic domain, residues 714 - 1047. VNG15921 cluster02 -> 1fbnA0 6.2661790 225 / 72 conP: 0.122 CATH-ID: 3.40.50.150 Mj fibrillarin homologue. Chain: a. Engineered: yes VNG15921 cluster03 -> 1sly03 7.1015669 173 / 72 conP: 0.227 CATH-ID: 1.10.530.10 70-kda soluble lytic transglycosylase. Chain: null. Synonym: slt70, ex VNG15921 cluster04 -> 1a0b00 6.4750260 117 / 72 conP: 0.297 CATH-ID: 1.20.120.160 Aerobic respiration control sensor protein arcb. Chain: null. Fragment VNG15921 cluster10 -> 1a0b00 7.7281079 117 / 72 conP: 0.378 CATH-ID: 1.20.120.160 Aerobic respiration control sensor protein arcb. Chain: null. Fragment --end-- VNG1598h one-of-top-five-correct: 0.424115261510534 CThresh: 3.201109 75 best_is: cluster01 VNG1598h cluster00 -> 3daaA1 6.7613687 118 / 70 conP: 0.273 CATH-ID: 3.30.470.10 D-amino acid aminotransferase. Chain: a, b. Engineered: yes. Biologica VNG1598h cluster01 -> 1he8A3 8.3182948 111 / 70 conP: 0.386 CATH-ID: 1.25.40.70 Phosphatidylinositol 3-kinase catalytic subunit, gamma isoform. Synony VNG1598h cluster02 -> 1azsA0 6.5507375 190 / 70 conP: 0.147 CATH-ID: 3.50.6.10 Vc1. Chain: a. Fragment: c1a domain of adenylyl cyclase. Engineered: y VNG1598h cluster03 -> 1utg00 7.2429142 70 / 70 conP: 0.410 CATH-ID: 1.10.210.10 Uteroglobin (oxidized) VNG1598h cluster04 -> 1t7pA3 6.3401063 178 / 70 conP: 0.154 CATH-ID: 3.30.70.370 DNA polymerase. Chain: a. Engineered: yes. Mutation: del(118-123). Thi --end-- VNG16160 one-of-top-five-correct: 0.428938336620146 CThresh: 0.988180 100 best_is: cluster11 VNG16160 cluster00 -> 1b0nA0 6.5944764 103 / 54 conP: 0.311 CATH-ID: 1.10.260.10 Sinr protein. Chain: a. Engineered: yes. Sini protein. Chain: b. Engin VNG16160 cluster01 -> 1qcnA 7.2775994 400 / 54 conP: 0.012 NO-CATH VNG16160 cluster02 -> 1b0nA0 6.5944764 103 / 54 conP: 0.311 CATH-ID: 1.10.260.10 Sinr protein. Chain: a. Engineered: yes. Sini protein. Chain: b. Engin VNG16160 cluster03 -> 1qqjA 7.0498917 416 / 54 conP: 0.009 NO-CATH VNG16160 cluster04 -> 1b0nA0 7.0498917 103 / 54 conP: 0.340 CATH-ID: 1.10.260.10 Sinr protein. Chain: a. Engineered: yes. Sini protein. Chain: b. Engin VNG16160 cluster11 -> 1qcnA 7.7330147 400 / 54 conP: 0.013 NO-CATH --end-- VNG16161 one-of-top-five-correct: 0.463468045058867 CThresh: 5.705726 75 best_is: cluster12 VNG16161 cluster00 -> 1fokA3 7.4943164 178 / 102 conP: 0.239 CATH-ID: 3.40.91.30 Foki restriction endonuclease. Chain: a. Synonym: r.Foki. Engineered: VNG16161 cluster01 -> 2hdhA1 6.8385689 193 / 102 conP: 0.190 CATH-ID: 3.40.50.720 L-3-hydroxyacyl coa dehydrogenase. Chain: a, b. Synonym: schad. Engine VNG16161 cluster02 -> 1dv7A0 7.0448309 212 / 102 conP: 0.179 CATH-ID: 3.20.20.90 Orotidine 5'-phosphate decarboxylase. Chain: a. Synonym: ompdecase. En VNG16161 cluster03 -> 1evyA 7.4684223 346 / 102 conP: 0.089 NO-CATH VNG16161 cluster04 -> 1b5400 7.8649550 230 / 102 conP: 0.196 CATH-ID: 3.20.20.10 Yeast hypothetical protein. Chain: null. Engineered: yes. Biological_u VNG16161 cluster12 -> 1ofgA1 9.1621903 170 / 102 conP: 0.349 CATH-ID: 3.40.50.720 Glucose-fructose oxidoreductase. Chain: a, b, c, d, e, f. Ec: 1.1.99.2 --end-- VNG16260 one-of-top-five-correct: 0.528539079185136 CThresh: 3.333353 75 best_is: cluster05 VNG16260 cluster00 -> 1pbe01 7.3026341 231 / 69 conP: 0.117 CATH-ID: 3.50.50.60 P-hydroxybenzoate hydroxylase (phbh) complexed with p-hydroxybenzoic a VNG16260 cluster01 -> 1a6dA1 8.7051248 244 / 69 conP: 0.148 CATH-ID: 1.10.560.10 Thermosome. Chain: a, b. Biological_unit: hexadecamer VNG16260 cluster02 -> 1mroB2 8.7051248 295 / 69 conP: 0.094 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: VNG16260 cluster03 -> 1jgiA 8.7051248 628 / 69 conP: 0.004 NO-CATH VNG16260 cluster04 -> 1jkw02 6.7810521 101 / 69 conP: 0.298 CATH-ID: 1.10.472.10 Cyclin h. Chain: null. Synonym: rcyclin h (recombinant). Engineered: y VNG16260 cluster05 -> 1mroB2 9.5513156 295 / 69 conP: 0.116 CATH-ID: 1.20.840.10 Methyl-coenzyme m reductase. Chain: a, b, c, d, e, f. Biological_unit: --end-- VNG16261 one-of-top-five-correct: 0.722313018585133 CThresh: 7.028958 25 best_is: cluster08 VNG16261 cluster00 -> 1lre00 6.5682409 81 / 126 conP: 0.312 CATH-ID: 1.20.81.10 Receptor-associated protein. Chain: null. Fragment: n-terminal domain, VNG16261 cluster01 -> 1ad600 8.7955573 185 / 126 conP: 0.326 CATH-ID: 1.10.472.10 Retinoblastoma tumor suppressor. Chain: null. Fragment: domain a. Engi VNG16261 cluster02 -> 1brwA3 7.6100898 67 / 126 conP: 0.398 CATH-ID: 1.20.970.10 Pyrimidine nucleoside phosphorylase. Chain: a, b. Synonym: pynp. Ec: 2 VNG16261 cluster03 -> 1qqeA0 6.6819275 281 / 126 conP: 0.134 CATH-ID: 1.25.40.10 Vesicular transport protein sec17. Chain: a. Engineered: yes. Mutation VNG16261 cluster04 -> 2lisA0 8.2213846 131 / 126 conP: 0.356 CATH-ID: 1.20.150.10 Sperm lysin. Chain: a VNG16261 cluster08 -> 1k40A 12.233559 126 / 126 conP: 0.644 NO-CATH --end-- VNG1630h one-of-top-five-correct: 0.334488443620174 CThresh: 5.051901 75 best_is: cluster11 VNG1630h cluster00 -> 1b8bA0 5.5096109 533 / 76 conP: 0.004 CATH-ID: 3.20.70.20 Anaerobic ribonucleotide-triphosphate reductase large chain. Chain: a. VNG1630h cluster01 -> 1apyB0 7.1532947 141 / 76 conP: 0.204 CATH-ID: 3.50.11.10 Aspartylglucosaminidase. Chain: a, b, c, d. Synonym: aga, glycosylaspa VNG1630h cluster02 -> 1e7aA1 6.1259924 103 / 76 conP: 0.212 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG1630h cluster03 -> 1alo02 5.6363710 119 / 76 conP: 0.168 CATH-ID: 1.10.150.120 Aldehyde oxidoreductase. Chain: null. Synonym: molybdenum iron sulfur VNG1630h cluster04 -> 1apyB0 6.1349028 141 / 76 conP: 0.160 CATH-ID: 3.50.11.10 Aspartylglucosaminidase. Chain: a, b, c, d. Synonym: aga, glycosylaspa VNG1630h cluster11 -> 1vin01 7.9751366 139 / 76 conP: 0.248 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O --end-- VNG16370 one-of-top-five-correct: 0.225327956359993 CThresh: 5.802190 75 best_is: cluster02 VNG16370 cluster00 -> 1nawA2 6.0930756 208 / 71 conP: 0.067 CATH-ID: 3.65.10.10 Udp-n-acetylglucosamine 1-carboxyvinyl-transferase. Chain: a, b. Engin VNG16370 cluster01 -> 1l3rE 5.6736134 338 / 71 conP: 0.017 CATH-TRUNC VNG16370 cluster02 -> 1bplA 6.9320001 179 / 71 conP: 0.109 CATH-TRUNC VNG16370 cluster03 -> 1cf9A2 6.3028067 121 / 71 conP: 0.153 CATH-ID: 1.10.422.10 Catalase hpii. Chain: a, b, c, d. Engineered: yes. Mutation: yes VNG16370 cluster04 -> 1e7aA5 6.0930756 112 / 71 conP: 0.157 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes --end-- VNG1640h one-of-top-five-correct: 0.354099556998175 CThresh: 8.354635 25 best_is: cluster08 VNG1640h cluster00 -> 1dpuA0 7.8589341 69 / 125 conP: 0.340 CATH-ID: 1.10.10.10 Replication protein a (rpa32) c-terminal domain. Chain: a. Fragment: c VNG1640h cluster01 -> 1gln04 6.2100330 48 / 125 conP: 0.265 CATH-ID: 1.10.8.70 Glutamyl-tRNA synthetase. Chain: null VNG1640h cluster02 -> 1elkA0 5.9447575 153 / 125 conP: 0.157 CATH-ID: 1.25.40.90 Target of myb1. Chain: a, b. Fragment: vhs domain. Engineered: yes. Mu VNG1640h cluster03 -> 1yrnA0 6.4651275 49 / 125 conP: 0.279 CATH-ID: 1.10.10.60 Mating-type protein a-1. Chain: a. Domain: homeodomain. Synonym: mat a VNG1640h cluster04 -> 1ba500 6.6450636 53 / 125 conP: 0.285 CATH-ID: 1.10.10.60 Htrf1. Chain: null. Fragment: DNA-binding domain. Synonym: telomeric r VNG1640h cluster08 -> 1lla01 8.5950683 357 / 125 conP: 0.113 CATH-ID: 1.10.639.10 Hemocyanin (subunit type ii) --end-- VNG1642h one-of-top-five-correct: 0.173737147749885 CThresh: 3.009509 96 best_is: cluster00 VNG1642h cluster00 -> 1afi00 5.5058408 72 / 39 conP: 0.165 CATH-ID: 3.30.70.100 Merp. Chain: null. Synonym: mercuric transport protein. Engineered: me VNG1642h cluster01 -> 1kvdB0 4.0012498 77 / 39 conP: 0.105 CATH-ID: 3.30.44.10 Smk toxin. Chain: a, b, c, d. Fragment: chain a and c are residues 19 VNG1642h cluster02 -> 1ea1A0 4.5027801 447 / 39 conP: 0.000 CATH-ID: 1.10.630.10 Cytochrome p450 51-like rv0764c. Chain: a. Synonym: cyp51, 14alpha-ste VNG1642h cluster03 -> 1bncA2 5.5058408 288 / 39 conP: 0.004 CATH-ID: 3.30.470.20 Biotin carboxylase. Chain: a, b. Ec: 6.3.4.14 VNG1642h cluster04 -> 1bal00 4.2520149 51 / 39 conP: 0.167 CATH-ID: 4.10.320.10 Dihydrolipoamide succinyltransferase (e3-binding domain) core from the --end-- VNG1645h one-of-top-five-correct: 0.415257671844252 CThresh: 3.850974 75 best_is: cluster15 VNG1645h cluster00 -> 1dkxA2 6.9760770 80 / 60 conP: 0.292 CATH-ID: 1.20.120.110 Substrate binding domain of dnak. Chain: a. Biological_unit: dimer. Su VNG1645h cluster01 -> 1qsaA2 6.0935382 70 / 60 conP: 0.264 CATH-ID: 1.10.1240.20 Soluble lytic transglycosylase slt70. Chain: a. Fragment: full protein VNG1645h cluster02 -> 1ejkA0 6.7856882 81 / 60 conP: 0.278 CATH-ID: 3.30.910.10 Dini protein. Chain: a. Engineered: yes VNG1645h cluster03 -> 1hxiA0 7.1967117 108 / 60 conP: 0.240 CATH-ID: 1.25.40.10 Peroxisome targeting signal 1 receptor pex5. Chain: a. Fragment: first VNG1645h cluster04 -> 1dkxA2 7.1967117 80 / 60 conP: 0.305 CATH-ID: 1.20.120.110 Substrate binding domain of dnak. Chain: a. Biological_unit: dimer. Su VNG1645h cluster15 -> 2a3dA0 8.7411548 73 / 60 conP: 0.426 CATH-ID: 1.20.1040.90 De novo three-helix bundle. Chain: a. Engineered: yes --end-- VNG1651h one-of-top-five-correct: 0.365103959334922 CThresh: 2.367437 100 best_is: cluster00 VNG1651h cluster00 -> 1vin01 7.3540880 139 / 66 conP: 0.280 CATH-ID: 1.10.472.10 Cyclin a. Chain: null. Engineered: yes. Mutation: s171g, del(1-170). O VNG1651h cluster01 -> 1psrA0 6.4964821 100 / 66 conP: 0.315 CATH-ID: 1.10.238.10 Psoriasin. Chain: a, b. Synonym: s100a7. Engineered: yes. Other_detail VNG1651h cluster02 -> 1efuB2 6.2820806 86 / 66 conP: 0.334 CATH-ID: 3.50.13.10 Elongation factor tu. Chain: a, c. Synonym: elongation factor for tran VNG1651h cluster03 -> 1bu2A2 6.9252851 102 / 66 conP: 0.337 CATH-ID: 1.10.472.10 Cyclin homolog. Chain: a. Engineered: yes VNG1651h cluster04 -> 1fnnA1 6.7108836 101 / 66 conP: 0.326 CATH-ID: 1.10.8.60 Cell division control protein 6. Chain: a, b. Synonym: cdc6p. Engineer --end-- VNG16540 one-of-top-five-correct: 0.455462326379889 CThresh: 4.771774 75 best_is: cluster06 VNG16540 cluster00 -> 1t7pA1 7.7369601 226 / 97 conP: 0.210 CATH-ID: 3.30.420.10 DNA polymerase. Chain: a. Engineered: yes. Mutation: del(118-123). Thi VNG16540 cluster01 -> 1e4fT4 8.3090825 89 / 97 conP: 0.458 CATH-ID: 3.30.420.70 Cell division protein ftsa. Chain: t. Engineered: yes VNG16540 cluster02 -> 1itg00 8.3826619 142 / 97 conP: 0.371 CATH-ID: 3.30.420.10 HIV-1 integrase (catalytic domain comprising residues 50 - 212) mutant VNG16540 cluster03 -> 1e4fT4 7.3512546 89 / 97 conP: 0.391 CATH-ID: 3.30.420.70 Cell division protein ftsa. Chain: t. Engineered: yes VNG16540 cluster04 -> 1itg00 7.2379312 142 / 97 conP: 0.297 CATH-ID: 3.30.420.10 HIV-1 integrase (catalytic domain comprising residues 50 - 212) mutant VNG16540 cluster06 -> 1oneA2 8.7642388 310 / 97 conP: 0.164 CATH-ID: 3.20.20.120 Enolase. Chain: a, b. Synonym: 2-phospho-d-glycerate hydrolase. Ec: 4. --end-- VNG1655h one-of-top-five-correct: 0.369018624994163 CThresh: 7.997366 25 best_is: cluster07 VNG1655h cluster00 -> 1e7aA3 7.7842378 92 / 117 conP: 0.306 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes VNG1655h cluster01 -> 1bg602 5.3891351 146 / 117 conP: 0.138 CATH-ID: 1.10.1040.10 N-(1-d-carboxylethyl)-l-norvaline dehydrogenase. Chain: null. Engineer VNG1655h cluster02 -> 1vib00 7.2775994 54 / 117 conP: 0.323 CATH-ID: 1.20.15.90 Neurotoxin b-iv. Chain: null VNG1655h cluster03 -> 1rpo00 7.1491133 61 / 117 conP: 0.306 CATH-ID: 1.20.15.200 Rop (cole1 repressor of primer) mutant with ala inserted on either sid VNG1655h cluster04 -> 1ryp10 6.9343754 222 / 117 conP: 0.137 CATH-ID: 3.60.20.10 20s proteasome. Chain: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, VNG1655h cluster07 -> 1ihgA 8.7921569 364 / 117 conP: 0.104 NO-CATH --end-- VNG1664h one-of-top-five-correct: 0.433701754497768 CThresh: 4.217968 75 best_is: cluster07 VNG1664h cluster00 -> 1hssA0 7.7579224 111 / 62 conP: 0.259 CATH-ID: 1.10.120.10 0.19 alpha-amylase inhibitor. Chain: a, b, c, d. Biological_unit: dime VNG1664h cluster01 -> 4crxA2 7.6949192 111 / 62 conP: 0.255 CATH-ID: 1.10.150.130 Cre recombinase. Chain: a, b. Engineered: yes. Mutation: r173k. Biolog VNG1664h cluster02 -> 1ddbA0 7.3209771 195 / 62 conP: 0.107 CATH-ID: 1.10.437.10 Bid. Chain: a. Engineered: yes. Biological_unit: monomer VNG1664h cluster03 -> 1hssA0 7.1025045 111 / 62 conP: 0.224 CATH-ID: 1.10.120.10 0.19 alpha-amylase inhibitor. Chain: a, b, c, d. Biological_unit: dime VNG1664h cluster04 -> 1e6bA 6.1590084 194 / 62 conP: 0.079 NO-CATH VNG1664h cluster07 -> 1fchA0 9.0687582 302 / 62 conP: 0.056 CATH-ID: 1.25.40.140 Peroxisomal targeting signal 1 receptor. Chain: a, b. Fragment: c-term --end-- VNG16672 one-of-top-five-correct: 0.51842779044843 CThresh: 4.249671 75 best_is: cluster05 VNG16672 cluster00 -> 1ebmA3 8.0748605 126 / 92 conP: 0.385 CATH-ID: 1.10.340.10 8-oxoguanine DNA glycosylase. Chain: a. Fragment: core fragment (resid VNG16672 cluster01 -> 1ebmA3 8.1688631 126 / 92 conP: 0.391 CATH-ID: 1.10.340.10 8-oxoguanine DNA glycosylase. Chain: a. Fragment: core fragment (resid VNG16672 cluster02 -> 1hy1A3 8.0576389 72 / 92 conP: 0.484 CATH-ID: 1.10.40.30 Delta crystallin ii. Chain: a, b, c, d. Synonym: delta-2-crystallin, a VNG16672 cluster03 -> 2cyp02 6.3042675 121 / 92 conP: 0.281 CATH-ID: 1.10.420.10 Cytochrome c peroxidase (ferrocytochrome c (colon) h2 O2 reductase) VNG16672 cluster04 -> 1trlA0 6.7845373 62 / 92 conP: 0.412 CATH-ID: 1.10.390.10 Thermolysin fragment 255 - 316 (nmr, 8 structures) VNG16672 cluster05 -> 1ebmA3 9.3321865 126 / 92 conP: 0.474 CATH-ID: 1.10.340.10 8-oxoguanine DNA glycosylase. Chain: a. Fragment: core fragment (resid --end-- VNG1672h one-of-top-five-correct: 0.231813337823689 CThresh: 8.955397 25 best_is: cluster08 VNG1672h cluster00 -> 1pda03 5.4994746 87 / 126 conP: 0.173 CATH-ID: 3.30.160.40 Porphobilinogen deaminase VNG1672h cluster01 -> 1ptvA0 6.6819275 297 / 126 conP: 0.084 CATH-ID: 3.90.190.10 Protein tyrosine phosphatase 1b. Chain: a. Engineered: yes. Mutation: VNG1672h cluster02 -> 1e8mA2 5.6251126 353 / 126 conP: 0.047 CATH-ID: 2.130.10.40 Prolyl endopeptidase. Chain: a. Synonym: prolyl endopeptidase, post-pr VNG1672h cluster03 -> 1es8A0 5.9773843 192 / 126 conP: 0.118 CATH-ID: 3.40.91.20 Restriction endonuclease bglii. Chain: a. Engineered: yes VNG1672h cluster04 -> 1ft1B0 4.8708711 416 / 126 conP: 0.027 CATH-ID: 1.50.10.40 Protein farnesyltransferase. Chain: a, b. Engineered: yes VNG1672h cluster08 -> 3tgl00 7.2103350 265 / 126 conP: 0.113 CATH-ID: 3.40.50.950 Triacylglycerol acylhydrolase --end-- VNG1674h one-of-top-five-correct: 0.316479417960154 CThresh: 4.062503 75 best_is: cluster06 VNG1674h cluster00 -> 1qmfA4 4.8545778 58 / 52 conP: 0.190 CATH-ID: 3.30.30.20 Penicillin-binding protein 2x. Chain: a. Engineered: yes. Other_detail VNG1674h cluster01 -> 1dn1A3 6.2363054 120 / 52 conP: 0.132 CATH-ID: 1.25.40.60 Syntaxin binding protein 1. Chain: a. Synonym: nsec1. Engineered: yes. VNG1674h cluster02 -> 1a81A1 4.6242899 108 / 52 conP: 0.101 CATH-ID: 3.30.505.10 Syk kinase. Chain: a, c, e, g, i, k. Fragment: tandem sh2 domain. Engi VNG1674h cluster03 -> 1gyfA0 3.9961806 62 / 52 conP: 0.148 CATH-ID: 2.30.35.50 Cytoplasmic domain binding protein (cd2bp2). Chain: a. Fragment: cd2-b VNG1674h cluster04 -> 1fuyA0 7.1574571 262 / 52 conP: 0.028 CATH-ID: 3.20.20.90 Tryptophan synthase alpha chain. Chain: a. Engineered: yes. Tryptophan VNG1674h cluster06 -> 1dn1A3 7.8483209 120 / 52 conP: 0.195 CATH-ID: 1.25.40.60 Syntaxin binding protein 1. Chain: a. Synonym: nsec1. Engineered: yes. --end-- VNG16750 one-of-top-five-correct: 0.327027312870679 CThresh: 5.114790 75 best_is: cluster10 VNG16750 cluster00 -> 3cla00 6.4871374 213 / 87 conP: 0.129 CATH-ID: 3.30.559.10 Type III chloramphenicol acetyltransferase ( CAT=III= ) complex with c VNG16750 cluster01 -> 1ay200 6.0958809 158 / 87 conP: 0.171 CATH-ID: 3.30.700.10 Type 4 pilin. Chain: null. Synonym: fimbriae. Biological_unit: fiber-f VNG16750 cluster02 -> 1gtxA1 5.5954972 167 / 87 conP: 0.142 CATH-ID: 3.30.70.160 4-aminobutyrate aminotransferase. Chain: a, b, c, d. Synonym: gaba-at. VNG16750 cluster03 -> 1qqeA0 5.7852042 281 / 87 conP: 0.065 CATH-ID: 1.25.40.10 Vesicular transport protein sec17. Chain: a. Engineered: yes. Mutation VNG16750 cluster04 -> 1mnmA 5.4238722 85 / 87 conP: 0.234 NO-CATH VNG16750 cluster10 -> 1jeyA 7.6609070 493 / 87 conP: 0.021 NO-CATH --end-- VNG16760 one-of-top-five-correct: 0.35983347561553 CThresh: 5.286109 75 best_is: cluster12 VNG16760 cluster00 -> 1euhA1 5.7768953 274 / 110 conP: 0.116 CATH-ID: 3.40.605.10 NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrog VNG16760 cluster01 -> 1i6kA 5.7768953 316 / 110 conP: 0.092 CATH-TRUNC VNG16760 cluster02 -> 1httA1 6.3277160 267 / 110 conP: 0.139 CATH-ID: 3.40.690.10 Histidyl-tRNA synthetase. Chain: a, b, c, d. Synonym: histidine-tRNA l VNG16760 cluster03 -> 1opr00 6.2614242 213 / 110 conP: 0.182 CATH-ID: 3.40.50.90 Orotate phosphoribosyltransferase. Chain: null. Synonym: oprtase. Engi VNG16760 cluster04 -> 1kwmA 6.8087621 306 / 110 conP: 0.126 CATH-TRUNC VNG16760 cluster12 -> 1e7aA2 7.6134008 90 / 110 conP: 0.419 CATH-ID: 1.10.246.10 Serum albumin. Chain: a, b. Engineered: yes --end-- VNG1678h one-of-top-five-correct: 0.715186332502203 CThresh: 7.185631 25 best_is: cluster01 VNG1678h cluster00 -> 1a36A5 11.069660 72 / 121 conP: 0.616 CATH-ID: 1.20.15.30 Topoisomerase i. Chain: a. Fragment: core domain and c-terminal domain VNG1678h cluster01 -> 1cii01 12.321948 344 / 121 conP: 0.323 CATH-ID: 1.20.250.10 Colicin ia. Chain: null. Engineered: yes. Biological_unit: monomer VNG1678h cluster02 -> 1a36A5 10.443119 72 / 121 conP: 0.572 CATH-ID: 1.20.15.30 Topoisomerase i. Chain: a. Fragment: core domain and c-terminal domain VNG1678h cluster03 -> 1cxzB0 8.2484640 86 / 121 conP: 0.396 CATH-ID: 1.20.15.130 His-tagged transforming protein rhoa(0-181). Chain: a. Fragment: resid VNG1678h cluster04 -> 1ixmA1 9.0193370 59 / 121 conP: 0.489 CATH-ID: 1.20.15.100 Sporulation response regulatory protein. Chain: a, b. Synonym: spo0b. --end-- VNG16971 one-of-top-five-correct: 0.233523286708893 CThresh: 6.797026 75 best_is: cluster04 VNG16971 cluster00 -> 2sas00 5.3375489 185 / 89 conP: 0.087 CATH-ID: 1.10.238.10 Sarcoplasmic calcium-binding protein (iso type ii) VNG16971 cluster01 -> 1c82A 5.4936097 719 / 89 conP: 0.001 CATH-TRUNC VNG16971 cluster02 -> 1tf4A1 5.9251045 454 / 89 conP: 0.013 CATH-ID: 1.50.10.30 T. Fusca endo/exo-cellulase e4 catalytic domain and cellulose-binding VNG16971 cluster03 -> 1bgxT6 5.0131351 144 / 89 conP: 0.107 CATH-ID: 1.10.473.10 Taq DNA polymerase. Chain: t. Engineered: yes. Biological_unit: monome VNG16971 cluster04 -> 1cem00 7.1002157 363 / 89 conP: 0.038 CATH-ID: 1.50.10.10 Cellulase cela (1,4-beta-d-glucan-glucanohydrolase). Chain: null. Frag --end-- VNG1699c one-of-top-five-correct: 0.199743258966129 CThresh: 8.719004 25 best_is: cluster17 VNG1699c cluster00 -> 1ei5A2 5.6465959 82 / 122 conP: 0.184 CATH-ID: 2.40.128.50 D-aminopeptidase. Chain: a. Synonym: dap. Engineered: yes VNG1699c cluster01 -> 1cauA0 4.1847171 181 / 122 conP: 0.078 CATH-ID: 2.60.120.10 Canavalin (jack bean 7s vicilin) VNG1699c cluster02 -> 1joeA 5.2495932 148 / 122 conP: 0.121 NO-CATH VNG1699c cluster03 -> 1dmlA0 4.6361929 267 / 122 conP: 0.055 CATH-ID: 3.70.10.30 DNA polymerase processivity factor. Chain: a, c, e, g. Fragment: n-ter VNG1699c cluster04 -> 1k56A0 3.3910023 242 / 122 conP: 0.045 CATH-ID: 3.40.710.10 Oxa10 beta-lactamase. Chain: a, b, c. Synonym: beta-lactamase pse-2. E VNG1699c cluster17 -> 1qu0A0 6.6746221 181 / 122 conP: 0.147 CATH-ID: 2.60.120.60 Laminin alpha2 chain. Chain: a, b, c, d. Fragment: lg5 module. Enginee --end-- VNG17030 one-of-top-five-correct: 0.257444695834218 CThresh: 4.605696 75 best_is: cluster07 VNG17030 cluster00 -> 1cjsA1 6.4666721 121 / 75 conP: 0.214 CATH-ID: 3.30.190.20 50s ribosomal protein l1p. Chain: a. Engineered: yes VNG17030 cluster01 -> 1jnrA 4.9224159 642 / 75 conP: 0.001 CATH-TRUNC VNG17030 cluster02 -> 1dh0A1 4.9224159 270 / 75 conP: 0.042 CATH-ID: 3.90.77.20 Adenosine kinase. Chain: a. Engineered: yes VNG17030 cluster03 -> 1eejA2 4.0167388 44 / 75 conP: 0.216 CATH-ID: 1.20.15.260 Thiol:disulfide interchange protein. Chain: a, b. Synonym: protein dis VNG17030 cluster04 -> 2yhx_ 5.9538435 457 / 75 conP: 0.010 CATH-TRUNC VNG17030 cluster07 -> 1elkA0 6.7789856 153 / 75 conP: 0.181 CATH-ID: 1.25.40.90 Target of myb1. Chain: a, b. Fragment: vhs domain. Engineered: yes. Mu --end-- VNG17031 one-of-top-five-correct: 0.0370824468242432 CThresh: 2.923029 100 best_is: --end-- VNG17032 one-of-top-five-correct: 0.303822571012818 CThresh: 3.490385 75 best_is: cluster01 VNG17032 cluster00 -> 1aqcA0 6.2675658 121 / 65 conP: 0.206 CATH-ID: 2.30.29.30 X11. Chain: a, b. Fragment: ptb domain. Peptide. Chain: c, d VNG17032 cluster01 -> 1jic00 7.1308843 62 / 65 conP: 0.387 CATH-ID: 2.40.50.40 Sso7d. Chain: null. Engineered: yes. Biological_unit: monomer VNG17032 cluster02 -> 1rgeA0 5.9731691 96 / 65 conP: 0.238 CATH-ID: 3.10.30.50 Ribonuclease. Chain: a, b. Ec: 3.1.27.3 VNG17032 cluster03 -> 1pbe01 6.9682711 231 / 65 conP: 0.089 CATH-ID: 3.50.50.60 P-hydroxybenzoate hydroxylase (phbh) complexed with p-hydroxybenzoic a VNG17032 cluster04 -> 1f8rA2 5.8794137 148 / 65 conP: 0.148 CATH-ID: 3.50.50.60 L-amino acid oxidase. Chain: a, b, c, d. Ec: 1.4.3.2 --end-- VNG17190 one-of-top-five-correct: 0.265709575745994 CThresh: 5.163619 75 best_is: cluster16 VNG17190 cluster00 -> 1ivyA0 5.3202155 452 / 66 conP: 0.004 CATH-ID: 3.40.50.950 Human protective protein. Chain: a, b. Synonym: protective protein/cat VNG17190 cluster01 -> 1c82A 4.4717116 719 / 66 conP: 0.000 CATH-TRUNC VNG17190 cluster02 -> 1ak000 5.8448846 264 / 66 conP: 0.034 CATH-ID: 1.10.575.10 P1 nuclease. Chain: null. Ec: 3.1.30.1 VNG17190 cluster03 -> 1dioB0 4.7812703 179 / 66 conP: 0.061 CATH-ID: 3.40.990.10 Diol dehydratase. Chain: a, l. Engineered: yes. Diol dehydratase. Chai VNG17190 cluster04 -> 1af800 5.6388762 86 / 66 conP: 0.181 CATH-ID: 1.10.1200.10 Actinorhodin polyketide synthase acyl carrier protein. Chain: null. Sy VNG17190 cluster16 -> 1acf00 7.3540880 125 / 66 conP: 0.194 CATH-ID: 3.30.450.30 Profilin i --end-- VNG1723h one-of-top-five-correct: 0.201463997663325 CThresh: 9.477580 25 best_is: cluster09 VNG1723h cluster00 -> 1dtwB2 6.3861083 197 / 135 conP: 0.129 CATH-ID: 3.40.50.970 Branched-chain alpha-keto acid dehydrogenase alpha subunit. Chain: a. VNG1723h cluster01 -> 1vdeA2 4.7586569 94 / 135 conP: 0.137 CATH-ID: 3.10.28.10 Pi-scei. Chain: a, b. Engineered: yes VNG1723h cluster02 -> 1d6mA4 4.6870156 127 / 135 conP: 0.116 CATH-ID: 1.10.290.10 DNA topoisomerase iii. Chain: a. Engineered: yes VNG