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Gaggle News

July 13, 2010 Gaggle Tool Creator (GTC) published in Source Code for Biology and Medicine


A paper on the Gaggle Tool Creator (GTC) was published in Source Code for Biology and Medicine. GTC: A web server for integrating systems biology data with web tools and desktop applications.

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August 26, 2009 3rd Annual Gaggle Workshop

Thanks to all who participated in the third annual Gaggle Workshop (2009). It was the most successful workshop so far. We had two days of presentations and discussion and welcomed several new collaborators to the project.

Please visit the workshop wiki page where you will be able to see presentations from the workshop and other information.

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June 29, 2009 Transcriptome structure paper published

Prevalence of transcription promoters within archaeal operons and coding sequences (Koide et al Molecular Systems Biology 5:285) provides an integrative analysis of transcriptome dynamics and protein–DNA interaction in H. salinarum using whole-genome tiling arrays and ChIP-chip.

Paper features Gaggle and our Genome Browser.

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June 02, 2009 Ontological Discovery Environment uses Gaggle

The Ontological Discovery Environment allows users to integrate phenotype centered gene sets across species, tissue and experimental platform. Sets can be stored, shared and compared privately, among user defined groups of investigators, and across all users.

The ODE is compatible with Gaggle, through the Firegoose extension to the Firefox web browser.

The ODE comes from Oak Ridge National Laboratory, and is a project of the NIAAA Integrative Neuroscience Initiative on Alcoholism (U01AA13499, U24AA13513).

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March 21, 2009 All Systems Go

Gaggle software was featured in The Scientist's March 2009 issue in an article title All Systems Go.

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August 27, 2008 Gaggle Workshop 2008

A 2 day Gaggle workshop was held August 25 and 26 at the Institute for Systems Biology in Seattle. See the workshop website for details and the wiki for a summary.

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May 15, 2008 Matlab Goose In Development

We are pleased to announce that our lab is putting the finishing touches on a Matlab Goose, which will bring Matlab into the fold of applications connected by the Gaggle framework.

You can see a screenshot of the Matlab Goose below, and you can check out the latest source code from the following Subversion repository:

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May 01, 2008 Flags and Lollipops blogs about Gaggle

The bionformatics blog Flags and Lollipops has blogged about Gaggle.

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March 25, 2008 Gaggle Workshop 2008

The second Gaggle workshop will be held at the Institute for Systems Biology in Seattle, Washington, on August 25-26 (Monday and Tuesday) of 2008.

Talks and discussion will cover visualization and analysis, data management, and messaging architectures for high-throughput biological data. We will also feature applications of Gaggle software tools to systems biology research.

By invitation only - contact us if you'd like to come!

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November 21, 2007 Firegoose paper published

Firegoose BMC Bioinformatics

The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications was published in BMC Bioinformatics.

The paper describes the Firegoose, a toolbar for the Firefox browser that allows data exchange between the Gaggle and popular bioinformatics websites and web services.

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