| Posted | ||
|---|---|---|
| January 06, 2012 | Genome Browser 1.0 Build 186 released |
This release includes contributions from Diego Martinez Salvanha of the Vêncio lab at the University of Sao Paulo, Ribeirão Preto, Brazil and Kai Chen of Genomatica. Thanks to them! |
| June 13, 2011 | The Gaggle Systems Bioinformatics Workshop 2011 |
The Institute for Systems Biology hosted a workshop focusing on interoperability between bioinformatics software tools, bringing together over 40 software developers and scientists for discussion and collaboration. The format was one day of talks, followed on the second day, by a hackathon, a forum for coding, discussion, informal presentations and collaboration. Thanks to all who participated! Visit the workshop site for more information. |
| October 26, 2010 | The Gaggle Systems Bioinformatics Workshop 2011 |
Building on the success of the previous Gaggle workshops, the 2011 workshop will bring together software developers and scientists to promote interoperability among bioinformatics software and databases and to explore opportunities for collaboration between developers and users of computing tools in the systems biology domain. Visit the workshop site for more information. |
| August 11, 2010 | Gaggle Genome Browser featured on OpenHelix blog |
The OpenHelix blog features a screencast on the Gaggle Genome Browser: Tip of the Week: Gaggle Genome Browser
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| August 05, 2010 | Introduction to Systems Biology Course 2010 |
The Introduction to Systems Biology course was held at ISB in Seattle the week of August 2, 2010. Topics covered included proteomics, DNA microarrays, and network inference integrating bench work with computational biology. Data analysis was performed using Gaggle software tools. |
| July 22, 2010 | Gaggle Genome Browser paper published |
The Gaggle Genome Browser joins heterogeneous data by their location on the genome to create information-rich visualizations yielding insight into genome organization, transcription and its regulation.
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| July 13, 2010 | Gaggle Tool Creator (GTC) published in Source Code for Biology and Medicine |
A paper on the Gaggle Tool Creator (GTC) was published in Source Code for Biology and Medicine. GTC: A web server for integrating systems biology data with web tools and desktop applications. |
| August 26, 2009 | 3rd Annual Gaggle Workshop |
Thanks to all who participated in the third annual Gaggle Workshop (2009). It was the most successful workshop so far. We had two days of presentations and discussion and welcomed several new collaborators to the project. Please visit the workshop wiki page where you will be able to see presentations from the workshop and other information. |
| June 29, 2009 | Transcriptome structure paper published |
Prevalence of transcription promoters within archaeal operons and coding sequences (Koide et al Molecular Systems Biology 5:285) provides an integrative analysis of transcriptome dynamics and protein–DNA interaction in H. salinarum using whole-genome tiling arrays and ChIP-chip. |
| June 02, 2009 | Ontological Discovery Environment uses Gaggle |
The Ontological Discovery Environment allows users to integrate phenotype centered gene sets across species, tissue and experimental platform. Sets can be stored, shared and compared privately, among user defined groups of investigators, and across all users. The ODE is compatible with Gaggle, through the Firegoose extension to the Firefox web browser. The ODE comes from Oak Ridge National Laboratory, and is a project of the NIAAA Integrative Neuroscience Initiative on Alcoholism (U01AA13499, U24AA13513). |
