Bicluster 133 (cmonkey_4.8.3_mtu_1650x75_11_Apr_27

[+] Show/hide bicluster #133 rows and columns.

bicluster 133 Mycobacterium tuberculosis H37Rv 7x36

Rv0717
Rv0718
Rv0719
Rv0720
Rv3442c
Rv3443c
Rv3922c

Antimycin
ARP4
Ascididemin_Natural_product
BZA
Cap
CCCP
Cerulenin
DCCD
Dipyridyl
DNP
GSNO_CFZ
GSNO_CPZ
INH
KCN
Levo
methoxatin
Min_med__succinate_
Nam
Nigericin
Novobiocin
NRP_1
Oflox
PA824
pH4_8
PZA
Rox
starvation
Succinate
Tet
TLM
TRC
UV
Verapamil
X_124196
X5CL_PZA
ZnSO4

[+] Show/hide bicluster #133 rows (genes).

bicluster 133 genes Mycobacterium tuberculosis H37Rv 7

Rv0717
Rv0718
Rv0719
Rv0720
Rv3442c
Rv3443c
Rv3922c

[+] Show/hide bicluster #133 rows (short gene names).

bicluster 133 short names Mycobacterium tuberculosis H37Rv 7 short_name

Rv0717	rpsN
Rv0718	rpsH
Rv0719	rplF
Rv0720	rplR
Rv3442c	rpsI
Rv3443c	rplM
Rv3922c

[+] Show/hide bicluster #133 rows (long gene names).

bicluster 133 long names Mycobacterium tuberculosis H37Rv 7 long_name

Rv0717	30S ribosomal protein S14
Rv0718	30S ribosomal protein S8
Rv0719	50S ribosomal protein L6
Rv0720	50S ribosomal protein L18
Rv3442c	30S ribosomal protein S9
Rv3443c	50S ribosomal protein L13
Rv3922c	hypothetical protein

[+] Show/hide bicluster #133 rows (NCBI RefSeq gene IDs).

bicluster 133 NCBI RefSeq IDs Mycobacterium tuberculosis H37Rv 12

NP_215232
NP_215232.1
NP_215233
NP_215233.1
NP_215234
NP_215234.1
NP_217959
NP_217959.1
NP_217960
NP_217960.1
NP_218439
NP_218439.1

[+] Show/hide bicluster #133 gene upstream sequences.

bicluster 133 upstream sequences Mycobacterium tuberculosis H37Rv 7 upstream

Rv3442c	CGTGGATGCTCGTCGGTAAGCTGCTCGGTTGGCGTGCGGTACGCCGGGACCTCGGGTCAATGTCGGTTCGCCGAGACCAACCCGCCGTTCACGCCTGACCGGCGCCCGGGGCACCCCGGGATCCACCCGAGAGAAAAGAAGGTAAGCGCTGTGCCCACGTACGCGCCCAA
Rv3443c	CGTGGATGCTCGTCGGTAAGCTGCTCGGTTGGCGTGCGGTACGCCGGGACCTCGGGTCAATGTCGGTTCGCCGAGACCAACCCGCCGTTCACGCCTGACCGGCGCCCGGGGCACCCCGGGATCCACCCGAGAGAAAAGAAGGTAAGCGCTGTGCCCACGTACGCGCCCAA
Rv0717	GGCCAGTTGATCGCCGAGCGGGCCAAAGCCGCCGGCATCGACACCGTGGTATTCGACCGCGGCGGGTATACCTACGGCGGACGAATCGCCGCGCTGGCCGACGCCGCACGCGAGAACGGATTGAGTTTCTGATGAACGGGAGGACCGCATAATGGCGGAGCAGCCGGCCG
Rv0718	GGCCAGTTGATCGCCGAGCGGGCCAAAGCCGCCGGCATCGACACCGTGGTATTCGACCGCGGCGGGTATACCTACGGCGGACGAATCGCCGCGCTGGCCGACGCCGCACGCGAGAACGGATTGAGTTTCTGATGAACGGGAGGACCGCATAATGGCGGAGCAGCCGGCCG
Rv0719	GGCCAGTTGATCGCCGAGCGGGCCAAAGCCGCCGGCATCGACACCGTGGTATTCGACCGCGGCGGGTATACCTACGGCGGACGAATCGCCGCGCTGGCCGACGCCGCACGCGAGAACGGATTGAGTTTCTGATGAACGGGAGGACCGCATAATGGCGGAGCAGCCGGCCG
Rv0720	GGCCAGTTGATCGCCGAGCGGGCCAAAGCCGCCGGCATCGACACCGTGGTATTCGACCGCGGCGGGTATACCTACGGCGGACGAATCGCCGCGCTGGCCGACGCCGCACGCGAGAACGGATTGAGTTTCTGATGAACGGGAGGACCGCATAATGGCGGAGCAGCCGGCCG
Rv3922c	AAAGTCGGCGATGCGGCTGCGACCTGGATTAGTCCAGGGACCGCGCCGGCCAGCAGCGAAAACCACCTCCGACTGTCCCGCGGGCCAATCGAGTTGGAAGGCAGTGAGTGGCCGGATGGTGATGTTGCCAGACATAGCGAGGAGACGCCCGTGACCAAGGGCAAAAGGAC

[+] Show/hide bicluster #133 columns (arrays; conditions).

bicluster 133 arrays Mycobacterium tuberculosis H37Rv 36

Antimycin
ARP4
Ascididemin_Natural_product
BZA
Cap
CCCP
Cerulenin
DCCD
Dipyridyl
DNP
GSNO_CFZ
GSNO_CPZ
INH
KCN
Levo
methoxatin
Min_med__succinate_
Nam
Nigericin
Novobiocin
NRP_1
Oflox
PA824
pH4_8
PZA
Rox
starvation
Succinate
Tet
TLM
TRC
UV
Verapamil
X_124196
X5CL_PZA
ZnSO4

[+] Show/hide bicluster #133 ratios.

bicluster 133 ratios Mycobacterium tuberculosis H37Rv 7x36

GENES Antimycin ARP4 Ascididemin_Natural_product BZA Cap CCCP Cerulenin DCCD Dipyridyl DNP GSNO_CFZ GSNO_CPZ INH KCN Levo methoxatin Min_med__succinate_ Nam Nigericin Novobiocin NRP_1 Oflox PA824 pH4_8 PZA Rox starvation Succinate Tet TLM TRC UV Verapamil X_124196 X5CL_PZA ZnSO4 Rv0717 0.544299625285735 -1.50325893725146 0 -1.03813576088687 1.42152782579616 -2.95425415250464 0.449150150948217 -2.65893189852407 0.489577104682276 -2.29261389237823 -0.610810319699658 -1.79765801568571 0.541855629851671 -2.16432802229718 0.410593344877986 0.226804981331239 0.150508649291740 -0.909492809090796 0.177878616131339 -0.338188767068607 -0.442143112384082 0.490219774478884 -2.87607378867167 -0.372657543473329 -0.904153690094185 1.38564225655613 -1.70739343735224 0.456438475743707 1.61249751670925 0.258483847644531 -1.44257683748271 0.414704571410336 -0.0181506038226351 0.474695566056051 -1.07211799088478 0.499693877609066 Rv0718 0.358971205204003 -1.31320187493096 -0.200438720449532 -0.866993117766415 0.99818766728711 -2.70328776638320 0.523464289207777 -2.91832005546829 0.198442587317914 -2.87609358736137 -0.683312090828214 -1.72247186527655 0.753230677365966 -2.53332164386362 0.362923578389961 0.243962588627760 -0.849135226257585 -0.305689672353785 0.526722040359999 -0.108421078646936 -0.34626246604065 0.425845805198779 -2.36362127086571 -0.56512548403328 -0.138545658274831 1.30212510475688 -1.86031190295896 0.364133727980795 1.25627648888338 0.135713734470406 -1.48476057449329 0.884195939286707 0.106428275786777 0.418582328530146 0 0.543379180946642 Rv0719 0.518202298404216 -1.08124640134594 -0.146089607444526 -0.264692282652515 0.840077852452266 -2.48347051237546 0.549793397017215 -2.48290190974908 0.538146345643213 -2.57481716312405 -0.877751619866416 -2.14129747747099 0.502464604757097 -2.32891865965184 0.535774849521877 0.685257872246132 -0.707474683749172 -0.312569929199936 0.658880845637642 -0.354034276943389 -0.556056999344559 0.902765723587476 -2.30641454293681 -0.785074188384839 -0.234149893427851 1.34356361227559 -1.94475248478166 0.554455151724446 1.72585986888549 0.227441503105055 -0.85246201446294 0.80078605921484 0.107012649813895 0.56782668587103 -0.190416539573227 0.508652243861856 Rv0720 0.421683626395811 -1.66731833754327 -0.0234936786720161 -0.83963789781112 0.574335472922585 -2.9386743907322 0.766139258218902 -2.69722321443972 0.396686045754981 -2.71579727898681 -0.457462591607618 -1.96672920520269 0.855390732289928 -2.28468359396800 0.247831404091539 0.365237088097181 -1.30293843081930 -0.327130652025812 0.710850690482385 -0.420789094605267 -0.338850357773593 0.344270781107005 -2.25945490595636 -0.572465212832389 0.122335711114461 0.843013232169828 -2.24068991394519 0.329247906288652 0.815982830618559 -0.295892029004781 -1.35779340968323 0.974579396185135 0.0136975489269641 0.401903773494376 0.0441815291875779 0.64366624801185 Rv3442c 0.427734198672574 -1.3468246358684 -0.222340661826043 -1.00813461542581 1.21233524651515 -2.86308862809095 0.647204019755862 -2.16872914235294 0.186559314707773 -2.80261765512388 -0.89357580113496 -2.27612740070838 0.746935442980397 -2.35907353060426 0.512200945845496 0.457204699629571 -0.112378254253566 -0.878831366759967 0.0315443350336639 0 -0.569436017317453 0.687677954308935 -2.6072008518766 -0.723990313698431 -0.457239830027145 1.5845025966759 -1.49711955153503 0.214202637449693 1.01748394339906 0.0975513219776044 -1.81121230282191 0.83208348573293 0.0940037446676522 0.189278850553555 -0.535505932018503 0.554274248981327 Rv3443c 0.322519077629305 -1.43878377319091 -0.083922798192226 -0.401463852652786 1.86085187583891 -2.6067850598131 0.785153856529073 -2.54560824041646 0.217912083494468 -3.21246782726026 -0.347360257134681 -1.57155724460407 0.702528753743651 -2.23045117944698 1.02621315193298 0.430353973914473 -0.040236518724344 -0.219051128878886 0.70835832390766 0.432959355509645 -0.0779820634870586 0.807246723129841 -2.09839083932095 0.0291015711039329 -0.103642826270491 1.77780693920734 -1.21210020911194 0.366272975135722 1.30469874882539 0.328672326795102 -1.84337802186118 0.673623721259628 0.115228266120513 0.124737650885083 0.443632556363246 0.58174605183211 Rv3922c -0.000151834322692570 -0.798889050667562 0.113284865687749 -0.0408373606727115 1.47169358776231 -3.23367917673756 0.498542836731943 -2.33858207534473 0.655135175188581 -2.72507125537443 -0.320153130635199 -1.35961652594094 0.641033310583665 -2.29563946423930 0.170770276422538 0.169048518856348 -0.531553165999589 0.0177849672229719 0.229364234947055 -0.0466688682695674 0 0.56365029322625 -2.07007938456015 -0.541358903373796 0.0884774193226949 0.851104888723618 -2.41851451387099 0.118627324634209 2.33085246803250 -0.108491355366407 -0.958876179279732 0.773703011553072 0.00778732359534367 0.448883493309094 0.183128198975065 -0.141242908385018

[+] Show/hide bicluster #133 motif PSSM #1.

bicluster 133 motif PSSM #1 Mycobacterium tuberculosis H37Rv 8x4

POSITION A C G T 1 0.666667 0 0 0.333333 2 0 0 0 1 3 0 1 0 0 4 0 0 1 0 5 0 1 0 0 6 0 1 0 0 7 0 0 1 0 8 1 0 0 0

[+] Show/hide bicluster #133 motif PSSM #2.

bicluster 133 motif PSSM #2 Mycobacterium tuberculosis H37Rv 8x4

POSITION A C G T 1 0 0 1 0 2 1 0 0 0 3 1 0 0 0 4 0.666667 0 0 0.333333 5 1 0 0 0 6 0 0.666667 0.333333 0 7 0.333333 0.666667 0 0 8 1 0 0 0