|
[+] Show/hide bicluster #122 rows and columns.
bicluster 122
Mycobacterium tuberculosis H37Rv
15x35
[+] Show/hide bicluster #122 rows (genes).
bicluster 122 genes
Mycobacterium tuberculosis H37Rv
15
[+] Show/hide bicluster #122 rows (short gene names).
bicluster 122 short names
Mycobacterium tuberculosis H37Rv
15
short_name
[+] Show/hide bicluster #122 rows (long gene names).
bicluster 122 long names
Mycobacterium tuberculosis H37Rv
15
long_name
[+] Show/hide bicluster #122 rows (NCBI RefSeq gene IDs).
bicluster 122 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
30
[+] Show/hide bicluster #122 gene upstream sequences.
bicluster 122 upstream sequences
Mycobacterium tuberculosis H37Rv
15
upstream
[+] Show/hide bicluster #122 columns (arrays; conditions).
bicluster 122 arrays
Mycobacterium tuberculosis H37Rv
35
[+] Show/hide bicluster #122 ratios.
bicluster 122 ratios
Mycobacterium tuberculosis H37Rv
15x35
GENES Antimycin ARP4 CCCP Cephalexin Cerulenin Clofazimine CPZ DIPED DNP DTT Eta GSNO_CFZ GSNO_CPZ INH menadione mercaptoethanol methoxatin Min_med__succinate_ Nigericin Oflox PA_1 PA_21 Palmitate pH4_8 pH5_2 Procept_6778 SM starvation TLM TRZ UV Valinomycin X_111895 X_241 ZnSO4
Rv0199 0.686878902113246 -0.966155793698628 -2.01405872902617 0.523590737784378 0.95494668590711 -1.08148981490808 -1.63365196432319 0.505940806238573 -1.48725280448771 -0.947966282843005 0.724976711953605 -1.90351055314996 -2.49653718092817 1.17952101178725 -0.413085930369198 0.561818956351388 0.663610601849944 -1.36252997735756 0.0562437745795602 0.170948372400569 0.643541181509321 0.571936272653741 0.616499906108631 -0.527365545068539 -0.402679717393158 0.413894383260538 0.305385729967185 -1.40392187953429 -0.0387747880726917 -1.92577929649501 0.0223323028853183 -1.79314932633984 -1.16426979906632 -0.919819853125404 0.482444314270163
Rv0431 0.0886449131435435 -1.25346415413085 -2.31472766063812 0.313858058186167 0.705285640692693 -1.22173212709095 -1.40445433853066 -0.515374359464794 -2.46243001693970 -1.22586912387389 0.675020278465413 -0.30322170117224 -1.87903709528407 1.07954541239251 -0.478900530242656 0.0774929228352092 0.480599952090434 -0.987325039512344 0.588332370595706 0.546548680115697 0.220867143632067 0.00691409622743675 0.185144180381942 -0.446912362249471 -1.08817844991148 0.00709503618853893 0.808109330147145 -0.259702595825109 0.0603715953349594 -1.72023584729839 -0.0603065732796698 -1.62910199342855 -0.56882068727946 -0.286196332512194 0.285043624174742
Rv0432 0.534533502269666 -1.20907763042048 -2.01319136963833 0.471477364654286 0.416219697426638 -1.68342307034920 -1.32543198584674 0.593785739947299 -2.01563004191677 -0.524895365771172 0.69591506150821 -0.836317869591083 -1.54192598685047 0.491706254436644 0.497167059251641 0.762242386169706 0.240864074837329 -1.37154381035167 0.555102010479638 1.20263449020018 0.820759204097383 0.42759739095178 -0.0889758275143652 -0.777522678168499 -0.0170132320230150 0 0.834375755102216 0.766901593740685 0.704945774613552 -2.26450708757757 -0.0246202226696166 -2.99018445990265 -0.690175740027039 -0.551473374580932 0.874923649151709
Rv0546c 0.804843461301944 -1.58442327409669 -2.47068307772932 0.636987216775814 1.04641610263000 -0.588775658930851 -1.34576200525752 0 -3.18349115615129 0.215130902637292 0.473140258342961 0.0472751627880521 -2.08881563426551 0.76724413574435 -0.458925112133611 0.0766831984169337 0.271792544819613 -0.0443662064093093 0.215642058652768 1.10328544617140 1.23354669268333 0.634928690937913 0.60903717683671 -1.27209303589306 -0.77419426916356 0.474792847201956 0.34266774725806 -1.57199744883194 -0.0424480477934591 -2.40910808785055 0.191215127859499 -2.39775288097218 -1.07166044419856 -0.603802025699912 0.66646154061716
Rv0636 0.321227233159634 -1.44767033451609 -3.03977969457356 0.0301263212312252 0.285293810634314 -1.27245270935971 -0.866344165204172 0.249516862373833 -3.07991217038583 -0.966231724999129 0.377487845700264 -0.889540623876465 -1.36856736406247 0.526242559313453 -0.225482422325077 -0.181116239930865 -0.0378518078438132 -0.954977053230063 0.112432796287904 0.551520164486408 0.208568073793229 0.304477146409132 -0.480600116223066 -0.158178017239299 0.41367261858726 -0.299438774828295 0.71419994409512 -1.26231150634566 0.700613279691403 -2.2518445770658 0.68648429039727 -1.17019007677108 -0.835204927446488 -0.426075226753868 0.0213665438914953
Rv0652 0.468192182163371 -0.675812786067808 -1.46310860632856 0.76391120408386 0.58613479033746 -1.23900451039634 -1.13009984462757 0.525035857239349 -2.68057201212244 -1.03168088595021 0.243921566508116 -0.430491468079548 -2.0666723135433 0.616118656604377 -0.472217476378078 0.160182530772286 0.415720408109897 -1.04666947758741 0.588792100502222 0.665219500012887 0.321484685558956 0.507275592271316 -0.0280481554806933 -0.664297334690217 -0.098933353985546 0.334339266735861 1.15606361386726 -1.26341088883087 0.306348542211384 -1.92685557279811 0.815657317836562 -1.38909647370536 -0.339212751128187 -0.209220594743754 0.396871301585791
Rv1241 0.930721359429773 -1.57329466817444 -3.04905554817261 0.160089199871676 1.15068377549145 -0.816187725113364 -1.26732866926439 0.332657887037722 -2.88799791506250 -1.53120489082135 0.679083109434048 -0.38337848688229 -1.18329299012708 1.06982963334075 -0.858606839477169 0.453699397248182 0.764174553253768 -0.877402262313565 0.972692874735112 0.181831701564021 0.483641322425822 0.396098189240529 0.221415848986646 -0.917594303230364 -0.507227288990897 0.0726382009432635 1.22779346521534 -0.637988222998194 0.416212024202768 -2.1477586785859 0.172887968703794 -1.23182822791054 -0.160637391424809 -0.65820526956537 1.06628466870205
Rv1408 0.252252436867143 -1.28371642618923 -2.83700169841147 0.0745140936434422 0.718765471698866 -0.852282852826477 -0.944666614144332 0.0820137301845117 -2.30380095022354 -0.855606934768849 0.761402623985634 -0.889427904886449 -1.32714776431848 0.932761443933804 -0.648461059726332 -0.186365261181280 0.262578254273276 0.346940114601441 0.870473973043339 -0.353228735235593 0.227563473002801 0.134875245813143 0.0441718313629103 -0.218600347909727 -0.253962606341255 0.395187757797996 -0.0597372572833533 -0.9358583282625 0.178183599207528 -2.23979591528261 0.173232488808604 -1.33122028106693 -1.21210915421549 -0.198939493375402 1.19589620889917
Rv1590 0.341509978640733 -0.963493517465209 -3.19202841852944 0.637264988654992 0.0618767246465843 -0.894248227011743 -0.895708698779107 0.142206915547356 -3.29921540463068 -0.572194027983382 0.52979177141087 -1.14548260421150 -1.83896357157971 1.11320112419332 -0.914505606966784 0.395575724916579 -0.214369248828588 -0.530362583300167 -0.264977342389371 1.82944885249786 0.221085353684736 0.257797287548755 0.0100480831718205 -0.81842300712866 -0.124279714400233 0.784827669780353 0.405641752352925 -0.940350957205988 0.129014916989053 -2.48082417902456 0.906579265377575 -1.95027899656935 -0.670313076560938 -0.243590001541729 0.681288944528323
Rv2069 0.187708767117424 -1.90280790322576 -2.90494519722184 0.09793660650938 0.349840761394035 -1.03141408106072 -1.17832105581585 0.365160361824651 -3.17355837921857 -1.06351801310274 0.696540742481214 -0.673028897503971 -1.99933307122853 0.453871429856661 -0.91172673358065 0.370611343113442 0.325238037621819 -1.61247237823029 0.478796462868768 0.846921704205955 0.171204828745249 0.318804694635275 0.329551075593527 -0.256324591350925 -0.172594294398737 -0.415898560439069 0.090651915264608 -0.74204717959498 0.643021933602537 -2.44508734195188 0.157528931707207 -2.14272645921607 -0.0566028585461187 -0.70828794418764 0.562162994871706
Rv2238c 0.181479009434188 -1.20718112394782 -2.54139519908829 0.100887887282556 0.294682302569597 -0.437531714334510 -1.36375563570869 0.227334264650346 -3.31893586036224 -1.02347760016673 0.0860708872359261 -0.72145184364483 -1.99883374315338 0.343781269579772 -0.218098142186603 0.238007292588628 0.103748068570033 0.820414829176871 1.12293744445424 -0.103357610021346 0 0.0392477426929533 0.138339752242586 -0.570684804436799 -0.058275167446864 0.647947965864129 0.161563605335860 -0.7905048899641 -0.076950984832664 -3.10487362882376 0.403257257467097 -2.33223272383674 -0.946368556297921 -1.28002842022235 0.728368980585186
Rv2462c 0.369360680051225 -1.49360471172566 -3.95446559096783 0.470585184127198 0.541250888982223 -1.49039225973022 -1.11384271107333 0.121772307990931 -3.47766373986759 -0.911439870562316 0.864966201712402 -1.05969944919373 -1.71269249497006 0.46585895603438 -0.555791730507713 0 0.302421882030095 -0.991851741403384 0.101898697715993 0.840380071487563 0.648697292026767 0.417689418314946 -0.275354491411416 -0.193342297423254 0.429751545774315 0.558594194523813 1.03776530917552 -1.48798119190523 0.690853407145762 -2.48791388973913 0.350098012006473 -0.672069063279644 -0.79779523613721 -0.473208096080331 1.19823612489138
Rv2951c 0.305234783577682 -1.30448630375580 -2.54277853114877 0.641846244802903 0.565610545192921 -0.756862601782569 -0.652035562187576 0.373709227926897 -2.77272988745455 -1.03570401186980 0.928491938736216 -0.719410814521856 -0.911209117296014 1.54612403908488 -0.800983784972437 0.734366844109923 0.117122889975243 -0.70921481432737 0.505970064932053 0.231154865926822 0.49229410657452 0.324201234229535 0.179197797528717 -0.815743388888958 -0.268204526275029 0.277070670887414 0.175744516729394 -0.321626757511814 0.213511916912436 -1.54975140068209 0.294360341253628 -2.34625847080653 -0.253135521957562 0.254985494094944 0.660228655590031
Rv2952 0.488422026221139 -1.23665678765100 -2.77744965622215 0.585721726573295 1.08914824740429 -1.14688520557839 -1.13631285372513 0.681749856032235 -2.68177147827968 -1.68136232392592 0.835357655732868 -1.12557855782114 -1.81432318441845 0.894300518303547 -0.448614816970589 0.775373778353565 0.491172374660107 -0.520979195097233 1.29567564487325 0.499042258699722 0 0.0488260624549781 0.147544869234401 -0.925441302036579 -0.285354329098591 0.199295171127831 0.471130218702202 -1.01203938588507 0.345620411681421 -2.11259101256138 0.432883296186959 -1.32284402746791 -0.476574776185809 -0.0386764744630769 0.941308462514335
Rv2993c 0.697260895033893 -2.09579170489768 -2.64719497168028 0.369483718871614 0.80009622882219 -0.356045177194159 -0.933382788075093 0.383757490331476 -2.3491806229167 -0.138435170368272 0.0507105561332948 -0.169079559638054 -1.92112361416164 -0.281339135755154 -0.325873244378413 0.619180746138049 1.36147174495378 -0.231098984647358 1.30825303464354 0.758906129652267 0.567981711558329 0.41310016311772 0.439090656684409 -0.531706687776712 -0.295869805501767 -0.198836823495459 0.832050156845072 -1.43529551634748 0.809064561529122 -2.33450112035215 0 -1.35246278149987 -0.776166026155572 -0.86871810707872 0.8833372075348
[+] Show/hide bicluster #122 motif PSSM #1. bicluster 122 motif PSSM #1 Mycobacterium tuberculosis H37Rv 20x4
POSITION A C G T
1 0 0 1 0
2 1 0 0 0
3 0 0.25 0.25 0.5
4 0 0 1 0
5 0 1 0 0
6 0 0.5 0.5 0
7 0.5 0.25 0.25 0
8 0 0 0 1
9 0.25 0 0.75 0
10 0.75 0 0.25 0
11 0 1 0 0
12 0.5 0.5 0 0
13 0 0 0.5 0.5
14 0 1 0 0
15 0 1 0 0
16 0 0 1 0
17 1 0 0 0
18 0 1 0 0
19 0 1 0 0
20 0 1 0 0 [+] Show/hide bicluster #122 motif PSSM #2. bicluster 122 motif PSSM #2 Mycobacterium tuberculosis H37Rv 21x4
POSITION A C G T
1 0 0 0 1
2 1 0 0 0
3 0 0 1 0
4 0 0 1 0
5 1 0 0 0
6 0.666667 0 0 0.333333
7 0 1 0 0
8 0 0 1 0
9 0 1 0 0
10 0 0 0.333333 0.666667
11 1 0 0 0
12 0 0.666667 0.333333 0
13 0 0.666667 0.333333 0
14 0 0 0 1
15 0 1 0 0
16 1 0 0 0
17 0 0 1 0
18 0 1 0 0
19 0 0 1 0
20 0.666667 0.333333 0 0
21 0 0 1 0 |