|
[+] Show/hide bicluster #119 rows and columns.
bicluster 119
Mycobacterium tuberculosis H37Rv
21x36
[+] Show/hide bicluster #119 rows (genes).
bicluster 119 genes
Mycobacterium tuberculosis H37Rv
21
[+] Show/hide bicluster #119 rows (short gene names).
bicluster 119 short names
Mycobacterium tuberculosis H37Rv
21
short_name
[+] Show/hide bicluster #119 rows (long gene names).
bicluster 119 long names
Mycobacterium tuberculosis H37Rv
21
long_name
[+] Show/hide bicluster #119 rows (NCBI RefSeq gene IDs).
bicluster 119 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
38
[+] Show/hide bicluster #119 gene upstream sequences.
bicluster 119 upstream sequences
Mycobacterium tuberculosis H37Rv
19
upstream
[+] Show/hide bicluster #119 columns (arrays; conditions).
bicluster 119 arrays
Mycobacterium tuberculosis H37Rv
36
[+] Show/hide bicluster #119 ratios.
bicluster 119 ratios
Mycobacterium tuberculosis H37Rv
21x36
GENES Amp BZA Cephalexin Cerulenin Clofazimine CPZ DCCD DIPED DTT EMB Eta GSNO_CFZ GSNO_KCN GSNO_menadione INH KCN Levo Min_med__succinate_ Mtm Nam NaN3 NRP_1 Oflox pH4_8 pH5_6 PZA Rif Rifp starvation Succinate TLM UV Valinomycin X_109 X_111891 ZnSO4
ORFD0244 -0.414617530490836 1.09535819994746 0.174342059803258 -0.583608390326435 -0.87460854145711 -0.0453195613159541 -0.360066224870608 -0.446770105308349 1.28288293025695 -0.645222376183597 -0.570575967878055 0.0604990289775386 0.615571007073082 0.583092436469482 -0.847978923956452 -0.694735592621344 -0.64007639485509 0.954395280446498 -0.331085758571071 0.773172521307558 0.526645203203431 -0.163905316721066 -0.693591908840325 0.811405273511871 0.239914531573272 1.73288022231868 -0.439022852580675 -0.840282251914672 1.72995944069553 1.19595012813716 -0.536623916321078 0.22779207941978 0.492841324372281 -0.471646369875248 -0.289211559417974 0.211952997078816
ORFD0322 0.109393701701967 -0.0506402611442383 -0.161922760125504 -0.742677870898444 -0.446597284762271 -0.305729181608575 0.809887210061095 -0.128837942533468 0.104957771074132 0.182313021793685 0.334619423190889 0.118873317811679 0.765087990226689 -0.806668664017042 0.0212919707527070 0.682974617302629 0 0.441582401616079 -0.263892519062538 -0.175568585527272 0.118873317811679 0.234130404692482 0.586103876432286 -0.182888418617866 -0.192115148865903 -0.248460382848065 0.36591885174199 0.300339765005577 0.382135757354749 -0.290595978405003 -0.50160274267953 -0.102094096043877 -0.123510423107005 0.0930634777935961 -0.230265620833681 0.118873317811679
Rv0077c -0.592751635708044 -0.227811078651031 -0.486004617937805 -0.288474609437129 0.121394295413821 -0.359478527435020 0.121394295413821 -0.580713741640913 0.0382401086284750 -0.71762497005473 -0.296730776404459 0.121394295413821 -0.388021891618408 0.309473522830549 -0.64161250509395 0.121394295413821 -0.442628182369463 0.121394295413821 -0.628009977736327 -0.350106013010292 0.121394295413821 0 -0.174374723545428 -0.548213903097816 -0.588236756852019 -0.0500051017697842 -1.11994507596798 -0.502986114583874 0.594449066652981 0.121394295413821 -0.489192897264052 -0.298116938270799 -1.0727256687888 -0.601376420543257 -0.70939184948496 0.121394295413821
Rv0277c -0.511149577436233 -0.794113868534296 0.435837134994883 0.0891243879714248 0 -0.283429149211123 0 0.0311118634917539 -0.145587861371985 -0.0631752281723173 -0.190270227494622 0 0 1.16796171743988 -0.119519224201932 0.62407680555364 -0.0955430569936778 0 -0.746897243337841 -0.572663724580929 0.954730110499827 0.522557258656398 -0.220338378794518 -0.765479387078183 -0.602996444257433 -0.628805594859089 0.447459908089865 0.122393638354736 0.577487924862178 0 -0.313242954358393 -0.495796525880942 0.148874300521282 0.302571922210419 -0.0235863448865116 0
Rv0425c 0.293633361802970 -0.441972749976666 0.125465466084053 0.0106836911028995 0 0.762920411871793 0 0.0190179487288769 0.0086163607186243 -0.118470767267902 -0.379002657633848 0 -2.12232114336612 -0.136822408831511 -0.722651187344925 0 -0.338049141520987 0 -0.357350514820589 -0.156418807711507 0 -0.498993863823243 -0.517657891605521 -0.448329779625354 0.20826260786662 -0.0214623304057026 0.180377150390501 0.767704029246407 -1.39747155292993 1.80056334597559 0.0871052611075106 -0.0635590247268274 -0.0969791571635988 0.373102673497296 0.652154767794974 0
Rv0426c 0.293388282421162 0.0368315870665734 -0.126877119206589 -0.522003631405154 2.00414608172228 1.92303746092119 0 -0.234806264823711 0.0211103429690712 -0.352560483749105 -0.492449987603173 0.571048175735966 -0.018948497248504 1.23946902832987 -0.504174305997788 -1.10344327456233 -0.460667897149725 0.265388719913161 -0.074421629883478 0.109459358557220 0.118570168438611 -1.05680702314229 -0.132738364812595 0.89764904262263 0.123923154833199 0.075189155308336 -1.36801531258949 -0.294230379892276 0.210854023014594 -0.607426232834226 -0.849380336022763 -0.281939129978079 -0.733468117127622 -0.531175526925494 -0.921303284946577 0.19776106486336
Rv0520 -0.476387773039486 -0.120843742719897 -0.255034582910980 -0.04857455628958 0 0.0977482313477715 0 -0.099354789752412 1.11378869312321 -0.299659993107864 -0.380873614312097 0 0 1.32523954883068 0.0913197674073465 0 -0.109960943289029 0 -0.275437770736 -0.228074524584801 0 1.30790217905439 -0.365747949974409 0.195862207169487 -0.385031214234302 -0.361265787365209 -0.0391111244647484 -0.153534433241787 0.474163095663058 0 -0.757236707268035 -0.0302948708076535 0.919236971490369 -0.199679830332585 -0.282560814785925 0
Rv0860 -0.631487807201743 1.6555306195214 -0.35595695456283 -0.472106994885349 0.19140907629032 -0.027241745828185 0 -0.556327240270292 1.36155312649960 -0.680824067032693 -0.187630355258387 0 1.10046947665298 -0.0555033680593691 -0.0477963632153376 0 -0.949489364136667 0 0.0622654057832162 1.10315154978531 0 0.148665416633541 -1.01284968110791 0.135948099292738 0.126087714329541 0.593162081229381 -1.14309285379352 -0.803536572655145 0.563259366960063 0 -0.162698915126032 0.0123457925419164 0.283138569694062 -0.581913819883596 -0.796126011209865 0
Rv1462 0 1.23996562783826 -0.30633664123575 0.00285693429776084 0.0378141708988841 -0.116550564231957 0.0378141708988841 -0.297150926513075 0.134281400497639 -0.184453111058482 -0.411504142681276 0.0378141708988841 -0.164521120963447 0.707831320449548 -0.83673274980662 0.0378141708988841 -1.01955173859146 0.0378141708988841 -0.252046638249197 -0.158456363806914 0.0378141708988841 0.335191368476277 -0.635942623542903 -0.427015577806202 0.146693361506902 0.0329218069398187 -1.79588908388922 -0.75487621619763 1.60712833049546 0.0378141708988841 -0.295148987864203 -0.0159964968739066 -0.412829406300514 -0.5161595141108 -0.560818873153146 0.0378141708988841
Rv1464 -0.352077645980757 1.29348152168666 0.0970006674898118 0.00613871388251751 0.184036577177188 0.0404028648695267 0.0865526319021882 -0.644539783573831 -0.855249042081869 -0.238077786886846 -0.128539980051522 0.0962980544086947 0.811067521181216 0.0270229035712229 -0.00271273824610032 0.0962980544086947 -0.982663254643354 -1.23776399732913 -0.405749553432015 0.185863948585577 0.137388117581375 -0.604230418978345 -0.764697840966441 -0.628571402863675 -0.426476944150768 0.699166316239055 -1.17105019077515 -0.548420806685946 0.574485681256929 0 -0.156629026209161 -0.436919610161698 -0.99745933641911 0.0263948097076002 -0.230079837220567 2.22801717001035
Rv1466 -0.0124173312670758 0.87922839976166 -0.153508871518096 -0.0115773882714507 0.480588739216737 -0.123027010876870 1.13712306809042 -0.400140261963497 0.655109197440016 -0.0358806950838227 0.361005483789909 -0.142957352426771 0.412490689062784 0.286337428780371 0.70113413975059 -0.299742398274551 0 -0.895840277063227 -0.113636292667151 0.439019393459019 -0.0500623570834443 -0.623301346361284 -1.03484000655719 -0.348334434918385 -0.383610183468811 0.584609489576176 -0.133338551992826 -0.616932365581843 0.767957975316157 -0.204462338905710 0.427884364284558 -0.0573051327535622 -0.383634583511667 0.159189667150262 -0.205981231836858 0.269852276402103
Rv1670 -0.187721074618471 -0.0410944220388311 -0.308796189098882 0.445981576809809 0.126308380815806 1.15512560762507 0.926804039813372 -0.388781377594802 0.382031195760104 -0.055291391095005 0.127802606476453 0.282591588568281 -0.149995428184659 0.0328096572467266 -0.094322073606905 -0.995121662583268 -0.0968055829776122 -0.307388006331889 0.0821373399866583 -0.394446836036083 0.282591588568281 -0.340878594802209 0.194493806580519 0.320057783881361 -0.917730189181112 0.37893434171424 0.18654289881458 -1.25025303380395 1.38295629133408 -0.0269791046054507 -0.169669380313384 -0.172086407577613 0.0260483587279806 -0.247584661509998 -0.420476557757675 0.282591588568281
Rv1685c -0.0309086108513079 0.205141911143961 -0.124092012369218 -0.0203481900083202 0.289169432638137 -0.401786382260800 0.676424989683435 0.106193077763662 0.0260002679230776 -0.0187591775951337 -0.0609784597509161 0.216936492546902 -0.252043646007145 -0.807470287474572 -0.084671196222759 0.69230092822425 0.0189086718102003 -0.657863084882133 0.00576713554716152 0.00386280477925903 0.216936492546902 -0.64364819068807 0.0314492821652648 -0.227738299365994 -0.166355904909883 0.0895613087813596 0.308077346862371 0.0775739836055176 0.308376616883555 0.0228689895676816 -0.0546055711889248 0.0607731197858282 0.587830050728363 -0.215067697627148 -0.09143799531979 0.216936492546902
Rv1686c -0.303024042553658 0.500752825343294 -0.00624907420244098 0.108143497844858 0.193142423657248 -0.0576275532831914 0.306818108291867 -0.265559245557885 0.435620935411268 -0.0914405030516678 -0.442332208792492 -0.157197803018004 0.688346587381736 0.283929744588736 -0.342396947729867 1.27567453647970 0.113623944747356 -0.128999897378352 0.208728340193221 0.326828598410917 -0.0868137822064707 -0.380844959795014 -0.082128538264859 0.334873890209829 0.437793228087222 0.225112284871261 0.0848964309209943 -0.109196925139983 0.563547927465488 0.0142813186118327 0.239584278937505 -0.0887386264642931 0.352987241110893 -0.184165563042971 0 -0.0418186162049926
Rv1687c -0.224913682705855 0.627122426014449 -0.117502417329337 0.0214904425493928 0.400856908414037 -0.116425942402128 -0.00111680562405458 0.0118345368788647 0.145833638392228 0 -0.0687721467936328 -0.220963173088625 0.607295287181451 -0.0224501253346843 0.0846989138842615 0.711200151321384 -0.0394191705510936 -0.0924537668791853 -0.193421207877863 0.311654300716081 0.374652969231155 -0.326790256282909 -0.0803267892688807 -0.263226123617352 -0.147494577584989 0.747046137439049 0.301555915315703 0.158017964214896 0.518819736444118 0.222076923320000 -0.0541535256446697 -0.0582461840006308 1.16141997048941 -0.282054616110479 -0.159144859202915 0.374652969231155
Rv1861 -0.343836128102226 -0.350865941082901 0.0967951593170273 -0.0116710974936969 0.570343748179764 0.849991386855495 0.0573886722667524 -0.832564608895428 0.152533480065383 0.200253246642652 0.630193152863996 0.124601760708091 0.112016194078976 -0.198442969246603 0.598473792352315 0.0429378029845698 0.113718541787262 0.189625723883277 -0.947596011641508 -0.614582927309692 -0.184096290048343 -0.56366767703931 0.0365960998764250 0.314981196293521 -0.323201215780241 -0.610027085734908 0.470134539044633 0.937322527877674 1.97336379731249 -0.729428703837596 0.44033018760246 -0.633635902134577 -0.955135983990155 0 -0.940360975768257 -0.713218994984823
Rv1888c -0.496907768890693 0.510634383106295 -0.459836675243360 -0.982600406950086 0 0.158889529932371 0 -1.53604432137722 0.869773721643312 -1.35711082762747 -0.604986281437907 0 0 0 -0.905071274112249 0 0.10308908950546 0 -0.0805229330704605 0.804229970432302 0 0 -0.440709002360234 -0.0376799385752 0.389280440384987 0.468798336356773 -1.20290364216260 -0.387259500089064 0.916861593088526 0 -0.597801666240107 -0.591285788820177 0.0434041311877575 -1.03582976932800 -0.913726715877304 0
Rv2827c -1.09941126739756 0.981529091889346 -0.841059755487127 -0.675545168444427 0 -0.53979786882199 0 -0.806275766358864 1.56017534158714 -0.885066894640226 -0.0988304012180257 0 0 0 -0.432917584641554 0 -0.615364355596254 0 -1.16638816249373 1.81133859056368 0 0 -0.980734438509167 -0.512850450128732 -1.47836094314451 1.71356255101984 -0.132595818649591 -0.731236709986841 -0.385544055355029 0 -0.290108817234838 -1.39857869533285 0.981219960939156 -0.67373935297142 -0.733969716906966 0
Rv3083 0.0925536586426064 0.812025106515934 -0.0522816294842505 0.0340396554784820 0 0.447204716173037 0 -0.34023685055515 0.224012308493661 -0.603820189884533 -1.11845656764965 0 1.14197200467012 -0.332489210022892 -0.879703384849604 0 -0.745044255253777 0 -0.990670948284713 1.33969300031363 0 0.288681238839303 -0.231148446618444 -0.233316034425254 0.212340534042381 0.75069392022322 -0.724210308042193 -0.492401297628663 2.07642995007472 0 -1.5465394787023 -0.506069114412413 -0.198323170387847 -0.461867348789375 0.748083894226613 0
Rv3086 0.452605481365786 0.0616557053458378 -0.112965592379273 -1.12306010951376 0 0.107221774975269 0 -0.498547992626232 0.606932350483797 -0.572480953037854 -0.437236330827534 0 0 0.592022197744252 -0.175531086805700 0 -1.08076904531484 0 -1.02414141414634 0.467344829327617 0 0.516855043368354 -0.406320205257192 -0.0378469038459224 0.378768650498517 0.0282000507590494 -0.272469216596702 0.00740995037345884 1.77464732925131 0 -0.369336095021867 -0.211436412266100 0.715227289997461 0.00690274929873027 -0.223563168136605 0
Rv3760 0.217415980703942 1.07149375800774 0.71099519853834 -0.599627292493441 -0.189254707569824 0.76639484272458 -0.00871413311569186 -0.548675475589967 0.265950877161958 -0.400292393358659 -0.0192904641050393 0.451893079632949 1.55944581670506 -0.178933232380098 -0.118950602540238 0.163860385498863 0 -0.770031619884337 -0.625522508431763 0.811519888228815 0.651321112648525 -0.936305115769301 -0.768438240283919 0.234625281197878 -0.177087479326658 0.875403371836336 -1.05413295770545 -0.484884232590178 0.146279634419384 1.21404211766411 -0.61381847421559 -0.673442711054426 -0.544598451879615 -0.471795783105225 0.157802931268052 -0.153022324340604
[+] Show/hide bicluster #119 motif PSSM #1. bicluster 119 motif PSSM #1 Mycobacterium tuberculosis H37Rv 18x4
POSITION A C G T
1 0 0.25 0 0.75
2 0 0.125 0.75 0.125
3 0.5 0 0 0.5
4 0.25 0 0.75 0
5 0 0 0.75 0.25
6 0.625 0 0.375 0
7 0.875 0 0 0.125
8 0.125 0.75 0 0.125
9 0.375 0 0 0.625
10 0 0 0.875 0.125
11 0 0 0.5 0.5
12 0.75 0.25 0 0
13 0.25 0.375 0.375 0
14 0.375 0.5 0.125 0
15 0.375 0 0 0.625
16 0.5 0.375 0.125 0
17 0.625 0 0.375 0
18 0.875 0.125 0 0 [+] Show/hide bicluster #119 motif PSSM #2. bicluster 119 motif PSSM #2 Mycobacterium tuberculosis H37Rv 8x4
POSITION A C G T
1 0 0 0.272727 0.727273
2 0 0.181818 0 0.818182
3 0 0.181818 0.090909 0.727273
4 0 0.090909 0.818182 0.090909
5 0.909091 0 0 0.090909
6 0.090909 0 0 0.909091
7 0 1 0 0
8 0.727273 0.272727 0 0 |